Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237640 | XP_003627201.2 | 98.785 | 247 | 3 | 0 | 2 | 248 | 78 | 324 | 2.99e-173 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237640 | sp|P24095|LOXX_SOYBN | 74.797 | 246 | 60 | 1 | 3 | 248 | 79 | 322 | 1.05e-128 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237640 | G7LIZ7 | 98.785 | 247 | 3 | 0 | 2 | 248 | 78 | 324 | 1.43e-173 | 509 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1233670 | Msa1237640 | 0.802902 | 4.501032e-49 | -8.615850e-47 |
| Msa1237640 | Msa1275840 | 0.804886 | 1.742122e-49 | -8.615850e-47 |
| Msa1237640 | Msa1275930 | 0.829117 | 6.159713e-55 | -8.615850e-47 |
| Msa1179140 | Msa1237640 | 0.839760 | 1.306368e-57 | -8.615850e-47 |
| Msa1179190 | Msa1237640 | 0.825483 | 4.572635e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237640 | MtrunA17_Chr8g0343021 | 98.785 | 247 | 3 | 0 | 2 | 248 | 78 | 324 | 2.75e-177 | 509 |
| Msa1237640 | MtrunA17_Chr8g0343031 | 92.308 | 247 | 19 | 0 | 2 | 248 | 79 | 325 | 6.38e-166 | 480 |
| Msa1237640 | MtrunA17_Chr5g0406871 | 81.855 | 248 | 44 | 1 | 2 | 248 | 80 | 327 | 2.35e-146 | 430 |
| Msa1237640 | MtrunA17_Chr2g0329911 | 71.371 | 248 | 70 | 1 | 2 | 248 | 73 | 320 | 1.17e-124 | 374 |
| Msa1237640 | MtrunA17_Chr2g0329901 | 71.371 | 248 | 69 | 2 | 2 | 248 | 78 | 324 | 2.23e-121 | 365 |
| Msa1237640 | MtrunA17_Chr8g0342881 | 66.397 | 247 | 81 | 2 | 3 | 248 | 69 | 314 | 4.97e-116 | 351 |
| Msa1237640 | MtrunA17_Chr8g0343011 | 61.943 | 247 | 87 | 2 | 3 | 248 | 83 | 323 | 6.87e-107 | 328 |
| Msa1237640 | MtrunA17_Chr8g0342891 | 62.348 | 247 | 91 | 2 | 3 | 248 | 74 | 319 | 1.30e-106 | 327 |
| Msa1237640 | MtrunA17_Chr8g0342971 | 62.097 | 248 | 91 | 3 | 3 | 248 | 82 | 328 | 8.53e-106 | 325 |
| Msa1237640 | MtrunA17_Chr8g0344211 | 62.753 | 247 | 90 | 2 | 3 | 248 | 81 | 326 | 1.21e-105 | 324 |
| Msa1237640 | MtrunA17_Chr8g0342951 | 64.516 | 248 | 86 | 2 | 2 | 248 | 80 | 326 | 1.02e-102 | 317 |
| Msa1237640 | MtrunA17_Chr3g0120071 | 62.348 | 247 | 87 | 3 | 4 | 248 | 74 | 316 | 1.54e-102 | 316 |
| Msa1237640 | MtrunA17_Chr8g0342921 | 60.729 | 247 | 95 | 2 | 3 | 248 | 82 | 327 | 8.77e-101 | 312 |
| Msa1237640 | MtrunA17_Chr8g0342901 | 56.790 | 243 | 91 | 4 | 3 | 244 | 76 | 305 | 4.38e-89 | 280 |
| Msa1237640 | MtrunA17_Chr8g0342931 | 62.679 | 209 | 76 | 2 | 41 | 248 | 1 | 208 | 2.78e-88 | 276 |
| Msa1237640 | MtrunA17_Chr8g0343001 | 56.504 | 246 | 104 | 3 | 2 | 245 | 61 | 305 | 4.96e-87 | 274 |
| Msa1237640 | MtrunA17_Chr8g0342991 | 56.504 | 246 | 104 | 3 | 2 | 245 | 61 | 305 | 2.73e-86 | 272 |
| Msa1237640 | MtrunA17_Chr1g0191921 | 51.004 | 249 | 112 | 4 | 5 | 247 | 69 | 313 | 5.24e-75 | 243 |
| Msa1237640 | MtrunA17_Chr8g0342981 | 54.310 | 232 | 88 | 7 | 3 | 223 | 51 | 275 | 7.01e-72 | 234 |
| Msa1237640 | MtrunA17_Chr1g0205611 | 48.594 | 249 | 118 | 4 | 5 | 246 | 59 | 304 | 8.36e-72 | 234 |
| Msa1237640 | MtrunA17_Chr7g0272791 | 48.617 | 253 | 118 | 5 | 5 | 248 | 74 | 323 | 1.02e-70 | 232 |
| Msa1237640 | MtrunA17_Chr8g0344201 | 45.175 | 228 | 117 | 3 | 24 | 247 | 157 | 380 | 1.74e-55 | 191 |
| Msa1237640 | MtrunA17_Chr8g0338451 | 42.745 | 255 | 126 | 7 | 3 | 243 | 72 | 320 | 3.90e-54 | 186 |
| Msa1237640 | MtrunA17_Chr3g0118651 | 42.857 | 217 | 119 | 3 | 31 | 246 | 141 | 353 | 3.52e-50 | 176 |
| Msa1237640 | MtrunA17_Chr3g0118641 | 41.667 | 216 | 120 | 3 | 35 | 248 | 144 | 355 | 1.75e-49 | 173 |
| Msa1237640 | MtrunA17_Chr3g0118621 | 42.523 | 214 | 117 | 3 | 35 | 246 | 106 | 315 | 1.88e-48 | 171 |
| Msa1237640 | MtrunA17_Chr4g0047281 | 42.233 | 206 | 105 | 5 | 27 | 224 | 152 | 351 | 5.68e-44 | 158 |
| Msa1237640 | MtrunA17_Chr8g0377101 | 39.732 | 224 | 122 | 6 | 31 | 247 | 152 | 369 | 4.78e-42 | 152 |
| Msa1237640 | MtrunA17_Chr4g0033171 | 48.734 | 158 | 76 | 3 | 90 | 246 | 23 | 176 | 2.59e-38 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1237640 | AT1G55020.1 | 50.800 | 250 | 111 | 4 | 4 | 247 | 70 | 313 | 1.89e-78 | 253 |
| Msa1237640 | AT3G22400.1 | 47.451 | 255 | 120 | 5 | 5 | 248 | 85 | 336 | 7.05e-71 | 233 |
| Msa1237640 | AT1G72520.1 | 45.575 | 226 | 112 | 4 | 26 | 247 | 160 | 378 | 1.74e-54 | 188 |
| Msa1237640 | AT1G17420.1 | 45.575 | 226 | 112 | 4 | 26 | 247 | 154 | 372 | 1.50e-53 | 185 |
| Msa1237640 | AT3G45140.1 | 42.358 | 229 | 119 | 7 | 26 | 248 | 132 | 353 | 5.94e-48 | 169 |
| Msa1237640 | AT3G45140.2 | 43.721 | 215 | 108 | 7 | 40 | 248 | 4 | 211 | 9.86e-47 | 165 |
| Msa1237640 | AT1G67560.1 | 37.838 | 222 | 127 | 5 | 30 | 247 | 153 | 367 | 6.52e-40 | 147 |
Find 64 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAATATGATGCTAATTT+TGG | 0.100125 | 8_2:-17153458 | Msa1237640:CDS |
| TCTTCTCTAAAGTGATTTAA+TGG | 0.196129 | 8_2:+17153115 | None:intergenic |
| GTTCCAAGAGATGAAAATTT+TGG | 0.231662 | 8_2:-17152785 | Msa1237640:CDS |
| AAGCTGAGTTCTTCCTTGTT+AGG | 0.258006 | 8_2:-17153400 | Msa1237640:CDS |
| CGAAGCTATCGAACTCGTTC+GGG | 0.320706 | 8_2:+17152663 | None:intergenic |
| TCTTCCTCAATTACCAACTT+TGG | 0.351741 | 8_2:-17153510 | Msa1237640:CDS |
| CTTCCTCAATTACCAACTTT+GGG | 0.355852 | 8_2:-17153509 | Msa1237640:CDS |
| AAATTCAAAGCTTACATCAT+TGG | 0.363405 | 8_2:+17153277 | None:intergenic |
| ACACCCGGTTTCTCACTCTT+AGG | 0.374698 | 8_2:+17152815 | None:intergenic |
| TCATCAGATTTCCTTATGTA+TGG | 0.390738 | 8_2:-17152752 | Msa1237640:CDS |
| GCCCTTGTTCGTCCAATCCT+TGG | 0.403862 | 8_2:-17152986 | Msa1237640:CDS |
| TTCAATTTGATTGTAACTCA+TGG | 0.409858 | 8_2:-17153343 | Msa1237640:CDS |
| AGCTGAGTTCTTCCTTGTTA+GGG | 0.413231 | 8_2:-17153399 | Msa1237640:CDS |
| ACAAGGGCGTCGCCACCATC+TGG | 0.423013 | 8_2:+17153001 | None:intergenic |
| ATGACTTTATTCCATACATA+AGG | 0.429212 | 8_2:+17152741 | None:intergenic |
| TCGAAGCTATCGAACTCGTT+CGG | 0.431615 | 8_2:+17152662 | None:intergenic |
| AGATCCTAAGAGTGAGAAAC+CGG | 0.434252 | 8_2:-17152819 | Msa1237640:CDS |
| TAACCCTGCGCGGGTAGGGA+TGG | 0.434485 | 8_2:+17152951 | None:intergenic |
| CACGGTTAGGAATATCTTCA+AGG | 0.435842 | 8_2:+17153372 | None:intergenic |
| AATTGAACACTTCCACGGTT+AGG | 0.444733 | 8_2:+17153359 | None:intergenic |
| AACCCTGCGCGGGTAGGGAT+GGG | 0.445806 | 8_2:+17152952 | None:intergenic |
| TTTCTTATGTAAAATGCTCC+AGG | 0.445840 | 8_2:+17153431 | None:intergenic |
| GCTCCCAAAGTTGGTAATTG+AGG | 0.477142 | 8_2:+17153506 | None:intergenic |
| TCTTGTCTTGCTCCCAAAGT+TGG | 0.477942 | 8_2:+17153497 | None:intergenic |
| AACTGGAGAACGCAAGGAAT+GGG | 0.486859 | 8_2:-17153065 | Msa1237640:CDS |
| AATCTAAGAGGAGATGGAAC+TGG | 0.486945 | 8_2:-17153082 | Msa1237640:CDS |
| TTGCAGAATCTAAGAGGAGA+TGG | 0.488557 | 8_2:-17153088 | Msa1237640:CDS |
| CTAAAGTGATTTAATGGAGC+CGG | 0.489595 | 8_2:+17153121 | None:intergenic |
| TATGATGTTTATAATGATCT+CGG | 0.490765 | 8_2:-17153028 | Msa1237640:CDS |
| GGTAGAAAACCAACCAGAAA+AGG | 0.492100 | 8_2:-17152923 | Msa1237640:intron |
| GCAAGTGGAAAGGGACTAGT+TGG | 0.499671 | 8_2:-17153557 | Msa1237640:CDS |
| GAAGAGTTGCAGAATCTAAG+AGG | 0.504427 | 8_2:-17153094 | Msa1237640:CDS |
| TCAATTTGATTGTAACTCAT+GGG | 0.505064 | 8_2:-17153342 | Msa1237640:CDS |
| GCACCCATCCCTACCCGCGC+AGG | 0.508969 | 8_2:-17152955 | Msa1237640:CDS |
| CTTCTAACCCTGCGCGGGTA+GGG | 0.513092 | 8_2:+17152947 | None:intergenic |
| GAACTGGAGAACGCAAGGAA+TGG | 0.517073 | 8_2:-17153066 | Msa1237640:CDS |
| CTTGTTCGTCCAATCCTTGG+AGG | 0.520793 | 8_2:-17152983 | Msa1237640:CDS |
| GTGCTAGATCCTCCAAGGAT+TGG | 0.523237 | 8_2:+17152974 | None:intergenic |
| AATCAAATTGAACACTTCCA+CGG | 0.532254 | 8_2:+17153354 | None:intergenic |
| CTCCAAGGATTGGACGAACA+AGG | 0.536054 | 8_2:+17152984 | None:intergenic |
| AATGGAGCCGGTGTTTGACT+TGG | 0.537557 | 8_2:+17153133 | None:intergenic |
| TGGAATAAAGTCATTGTCAC+AGG | 0.544868 | 8_2:-17152732 | Msa1237640:CDS |
| TTCTTATGTAAAATGCTCCA+GGG | 0.549723 | 8_2:+17153432 | None:intergenic |
| TACCACTTCTAACCCTGCGC+GGG | 0.559995 | 8_2:+17152942 | None:intergenic |
| AAAATTACAGATTGTAACAA+AGG | 0.568552 | 8_2:+17152701 | None:intergenic |
| CTTCAAGGGTCACCCTAACA+AGG | 0.570848 | 8_2:+17153387 | None:intergenic |
| ACTTCTAACCCTGCGCGGGT+AGG | 0.574571 | 8_2:+17152946 | None:intergenic |
| ACGGTTAGGAATATCTTCAA+GGG | 0.589822 | 8_2:+17153373 | None:intergenic |
| AGATGGAACTGGAGAACGCA+AGG | 0.597231 | 8_2:-17153071 | Msa1237640:CDS |
| GAGAACGCAAGGAATGGGAT+AGG | 0.600200 | 8_2:-17153060 | Msa1237640:CDS |
| CTTGGAACATAAATCACACC+CGG | 0.607189 | 8_2:+17152800 | None:intergenic |
| TCCAAGGATTGGACGAACAA+GGG | 0.614423 | 8_2:+17152985 | None:intergenic |
| TGGAAAGGGACTAGTTGGAA+AGG | 0.616828 | 8_2:-17153552 | Msa1237640:CDS |
| CACCCATCCCTACCCGCGCA+GGG | 0.622764 | 8_2:-17152954 | Msa1237640:CDS |
| GTATCTTCCAAGTCAAACAC+CGG | 0.632900 | 8_2:-17153140 | Msa1237640:CDS |
| AATGATCTCGGAAATCCAGA+TGG | 0.636791 | 8_2:-17153016 | Msa1237640:CDS |
| GATGGGTGCTAGATCCTCCA+AGG | 0.639381 | 8_2:+17152969 | None:intergenic |
| CTACCACTTCTAACCCTGCG+CGG | 0.646220 | 8_2:+17152941 | None:intergenic |
| GATAGCTTCGATGAAGTGCG+TGG | 0.651898 | 8_2:-17152650 | Msa1237640:CDS |
| GAAGCTATCGAACTCGTTCG+GGG | 0.668697 | 8_2:+17152664 | None:intergenic |
| TACCCGCGCAGGGTTAGAAG+TGG | 0.670924 | 8_2:-17152944 | Msa1237640:CDS |
| GATCTCGGAAATCCAGATGG+TGG | 0.675448 | 8_2:-17153013 | Msa1237640:CDS |
| CTTGAAGATATTCCTAACCG+TGG | 0.678873 | 8_2:-17153371 | Msa1237640:CDS |
| GATCCTAAGAGTGAGAAACC+GGG | 0.695001 | 8_2:-17152818 | Msa1237640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTAATTTTTTTTAT+AGG | + | chr8_2:17152976-17152995 | None:intergenic | 0.0% |
| !!! | ATTATATTAATTTTTTTTAT+AGG | + | chr8_2:17152976-17152995 | None:intergenic | 0.0% |
| !!! | TTTGAATTTTAAATTAACAA+GGG | - | chr8_2:17152925-17152944 | Msa1237640:CDS | 10.0% |
| !!! | TTTGAATTTTAAATTAACAA+GGG | - | chr8_2:17152925-17152944 | Msa1237640:CDS | 10.0% |
| !!! | CTTTGAATTTTAAATTAACA+AGG | - | chr8_2:17152924-17152943 | Msa1237640:CDS | 15.0% |
| !!! | AATTAATGTATCCATTTTAT+AGG | - | chr8_2:17153309-17153328 | Msa1237640:CDS | 15.0% |
| !!! | CTTTGAATTTTAAATTAACA+AGG | - | chr8_2:17152924-17152943 | Msa1237640:CDS | 15.0% |
| !!! | AATTAATGTATCCATTTTAT+AGG | - | chr8_2:17153309-17153328 | Msa1237640:CDS | 15.0% |
| !!! | TTTGAATATGATGCTAATTT+TGG | - | chr8_2:17152730-17152749 | Msa1237640:CDS | 20.0% |
| !! | AAATCATATGAAAAAATCAC+AGG | - | chr8_2:17153024-17153043 | Msa1237640:CDS | 20.0% |
| !! | TATGATGTTTATAATGATCT+CGG | - | chr8_2:17153160-17153179 | Msa1237640:intron | 20.0% |
| !! | GGATACATTAATTTCATTAA+CGG | + | chr8_2:17153302-17153321 | None:intergenic | 20.0% |
| !! | AAAATTACAGATTGTAACAA+AGG | + | chr8_2:17153490-17153509 | None:intergenic | 20.0% |
| !!! | TTTGAATATGATGCTAATTT+TGG | - | chr8_2:17152730-17152749 | Msa1237640:CDS | 20.0% |
| !! | AAATCATATGAAAAAATCAC+AGG | - | chr8_2:17153024-17153043 | Msa1237640:CDS | 20.0% |
| !! | TATGATGTTTATAATGATCT+CGG | - | chr8_2:17153160-17153179 | Msa1237640:intron | 20.0% |
| !! | GGATACATTAATTTCATTAA+CGG | + | chr8_2:17153302-17153321 | None:intergenic | 20.0% |
| !! | AAAATTACAGATTGTAACAA+AGG | + | chr8_2:17153490-17153509 | None:intergenic | 20.0% |
| ! | TTCAATTTGATTGTAACTCA+TGG | - | chr8_2:17152845-17152864 | Msa1237640:intron | 25.0% |
| ! | TCAATTTGATTGTAACTCAT+GGG | - | chr8_2:17152846-17152865 | Msa1237640:intron | 25.0% |
| ! | AAATTCAAAGCTTACATCAT+TGG | + | chr8_2:17152914-17152933 | None:intergenic | 25.0% |
| !!! | TCTTCTCTAAAGTGATTTAA+TGG | + | chr8_2:17153076-17153095 | None:intergenic | 25.0% |
| ! | ATTAGAACGTTCCTATAAAA+TGG | + | chr8_2:17153323-17153342 | None:intergenic | 25.0% |
| !! | TTTTATAGGAACGTTCTAAT+TGG | - | chr8_2:17153323-17153342 | Msa1237640:CDS | 25.0% |
| ! | ATGACTTTATTCCATACATA+AGG | + | chr8_2:17153450-17153469 | None:intergenic | 25.0% |
| ! | TTCAATTTGATTGTAACTCA+TGG | - | chr8_2:17152845-17152864 | Msa1237640:intron | 25.0% |
| ! | TCAATTTGATTGTAACTCAT+GGG | - | chr8_2:17152846-17152865 | Msa1237640:intron | 25.0% |
| ! | AAATTCAAAGCTTACATCAT+TGG | + | chr8_2:17152914-17152933 | None:intergenic | 25.0% |
| !!! | TCTTCTCTAAAGTGATTTAA+TGG | + | chr8_2:17153076-17153095 | None:intergenic | 25.0% |
| ! | ATTAGAACGTTCCTATAAAA+TGG | + | chr8_2:17153323-17153342 | None:intergenic | 25.0% |
| !! | TTTTATAGGAACGTTCTAAT+TGG | - | chr8_2:17153323-17153342 | Msa1237640:CDS | 25.0% |
| ! | ATGACTTTATTCCATACATA+AGG | + | chr8_2:17153450-17153469 | None:intergenic | 25.0% |
| TTCTTATGTAAAATGCTCCA+GGG | + | chr8_2:17152759-17152778 | None:intergenic | 30.0% | |
| TTTCTTATGTAAAATGCTCC+AGG | + | chr8_2:17152760-17152779 | None:intergenic | 30.0% | |
| AATCAAATTGAACACTTCCA+CGG | + | chr8_2:17152837-17152856 | None:intergenic | 30.0% | |
| ! | GTTCCAAGAGATGAAAATTT+TGG | - | chr8_2:17153403-17153422 | Msa1237640:CDS | 30.0% |
| ! | TGACCAAAATTTTCATCTCT+TGG | + | chr8_2:17153409-17153428 | None:intergenic | 30.0% |
| TCATCAGATTTCCTTATGTA+TGG | - | chr8_2:17153436-17153455 | Msa1237640:CDS | 30.0% | |
| TTCTTATGTAAAATGCTCCA+GGG | + | chr8_2:17152759-17152778 | None:intergenic | 30.0% | |
| TTTCTTATGTAAAATGCTCC+AGG | + | chr8_2:17152760-17152779 | None:intergenic | 30.0% | |
| AATCAAATTGAACACTTCCA+CGG | + | chr8_2:17152837-17152856 | None:intergenic | 30.0% | |
| ! | GTTCCAAGAGATGAAAATTT+TGG | - | chr8_2:17153403-17153422 | Msa1237640:CDS | 30.0% |
| ! | TGACCAAAATTTTCATCTCT+TGG | + | chr8_2:17153409-17153428 | None:intergenic | 30.0% |
| TCATCAGATTTCCTTATGTA+TGG | - | chr8_2:17153436-17153455 | Msa1237640:CDS | 30.0% | |
| TCTTCCTCAATTACCAACTT+TGG | - | chr8_2:17152678-17152697 | Msa1237640:CDS | 35.0% | |
| CTTCCTCAATTACCAACTTT+GGG | - | chr8_2:17152679-17152698 | Msa1237640:CDS | 35.0% | |
| ACGGTTAGGAATATCTTCAA+GGG | + | chr8_2:17152818-17152837 | None:intergenic | 35.0% | |
| CTAAAGTGATTTAATGGAGC+CGG | + | chr8_2:17153070-17153089 | None:intergenic | 35.0% | |
| TGGAATAAAGTCATTGTCAC+AGG | - | chr8_2:17153456-17153475 | Msa1237640:CDS | 35.0% | |
| ! | ACTTTTCGAAGGTGGAATTA+AGG | - | chr8_2:17153561-17153580 | Msa1237640:CDS | 35.0% |
| TCTTCCTCAATTACCAACTT+TGG | - | chr8_2:17152678-17152697 | Msa1237640:CDS | 35.0% | |
| CTTCCTCAATTACCAACTTT+GGG | - | chr8_2:17152679-17152698 | Msa1237640:CDS | 35.0% | |
| ACGGTTAGGAATATCTTCAA+GGG | + | chr8_2:17152818-17152837 | None:intergenic | 35.0% | |
| CTAAAGTGATTTAATGGAGC+CGG | + | chr8_2:17153070-17153089 | None:intergenic | 35.0% | |
| TGGAATAAAGTCATTGTCAC+AGG | - | chr8_2:17153456-17153475 | Msa1237640:CDS | 35.0% | |
| !!! | GATGCTAATTTTGGAATCCC+TGG | - | chr8_2:17152739-17152758 | Msa1237640:CDS | 40.0% |
| AAGCTGAGTTCTTCCTTGTT+AGG | - | chr8_2:17152788-17152807 | Msa1237640:CDS | 40.0% | |
| AGCTGAGTTCTTCCTTGTTA+GGG | - | chr8_2:17152789-17152808 | Msa1237640:CDS | 40.0% | |
| CACGGTTAGGAATATCTTCA+AGG | + | chr8_2:17152819-17152838 | None:intergenic | 40.0% | |
| CTTGAAGATATTCCTAACCG+TGG | - | chr8_2:17152817-17152836 | Msa1237640:CDS | 40.0% | |
| AATTGAACACTTCCACGGTT+AGG | + | chr8_2:17152832-17152851 | None:intergenic | 40.0% | |
| GTATCTTCCAAGTCAAACAC+CGG | - | chr8_2:17153048-17153067 | Msa1237640:CDS | 40.0% | |
| GAAGAGTTGCAGAATCTAAG+AGG | - | chr8_2:17153094-17153113 | Msa1237640:CDS | 40.0% | |
| TTGCAGAATCTAAGAGGAGA+TGG | - | chr8_2:17153100-17153119 | Msa1237640:CDS | 40.0% | |
| AATCTAAGAGGAGATGGAAC+TGG | - | chr8_2:17153106-17153125 | Msa1237640:CDS | 40.0% | |
| AATGATCTCGGAAATCCAGA+TGG | - | chr8_2:17153172-17153191 | Msa1237640:intron | 40.0% | |
| GGTAGAAAACCAACCAGAAA+AGG | - | chr8_2:17153265-17153284 | Msa1237640:intron | 40.0% | |
| !! | GTGAACTAACCTTTTCTGGT+TGG | + | chr8_2:17153277-17153296 | None:intergenic | 40.0% |
| ! | GGTAGTGAACTAACCTTTTC+TGG | + | chr8_2:17153281-17153300 | None:intergenic | 40.0% |
| AGATCCTAAGAGTGAGAAAC+CGG | - | chr8_2:17153369-17153388 | Msa1237640:CDS | 40.0% | |
| CTTGGAACATAAATCACACC+CGG | + | chr8_2:17153391-17153410 | None:intergenic | 40.0% | |
| !!! | GATGCTAATTTTGGAATCCC+TGG | - | chr8_2:17152739-17152758 | Msa1237640:CDS | 40.0% |
| AAGCTGAGTTCTTCCTTGTT+AGG | - | chr8_2:17152788-17152807 | Msa1237640:CDS | 40.0% | |
| AGCTGAGTTCTTCCTTGTTA+GGG | - | chr8_2:17152789-17152808 | Msa1237640:CDS | 40.0% | |
| CACGGTTAGGAATATCTTCA+AGG | + | chr8_2:17152819-17152838 | None:intergenic | 40.0% | |
| CTTGAAGATATTCCTAACCG+TGG | - | chr8_2:17152817-17152836 | Msa1237640:CDS | 40.0% | |
| AATTGAACACTTCCACGGTT+AGG | + | chr8_2:17152832-17152851 | None:intergenic | 40.0% | |
| GTATCTTCCAAGTCAAACAC+CGG | - | chr8_2:17153048-17153067 | Msa1237640:CDS | 40.0% | |
| GAAGAGTTGCAGAATCTAAG+AGG | - | chr8_2:17153094-17153113 | Msa1237640:CDS | 40.0% | |
| TTGCAGAATCTAAGAGGAGA+TGG | - | chr8_2:17153100-17153119 | Msa1237640:CDS | 40.0% | |
| AATCTAAGAGGAGATGGAAC+TGG | - | chr8_2:17153106-17153125 | Msa1237640:CDS | 40.0% | |
| AATGATCTCGGAAATCCAGA+TGG | - | chr8_2:17153172-17153191 | Msa1237640:intron | 40.0% | |
| GGTAGAAAACCAACCAGAAA+AGG | - | chr8_2:17153265-17153284 | Msa1237640:intron | 40.0% | |
| !! | GTGAACTAACCTTTTCTGGT+TGG | + | chr8_2:17153277-17153296 | None:intergenic | 40.0% |
| ! | GGTAGTGAACTAACCTTTTC+TGG | + | chr8_2:17153281-17153300 | None:intergenic | 40.0% |
| AGATCCTAAGAGTGAGAAAC+CGG | - | chr8_2:17153369-17153388 | Msa1237640:CDS | 40.0% | |
| CTTGGAACATAAATCACACC+CGG | + | chr8_2:17153391-17153410 | None:intergenic | 40.0% | |
| !! | TGGAAAGGGACTAGTTGGAA+AGG | - | chr8_2:17152636-17152655 | Msa1237640:CDS | 45.0% |
| !! | GCTCCCAAAGTTGGTAATTG+AGG | + | chr8_2:17152685-17152704 | None:intergenic | 45.0% |
| TCTTGTCTTGCTCCCAAAGT+TGG | + | chr8_2:17152694-17152713 | None:intergenic | 45.0% | |
| AACTGGAGAACGCAAGGAAT+GGG | - | chr8_2:17153123-17153142 | Msa1237640:CDS | 45.0% | |
| TCCAAGGATTGGACGAACAA+GGG | + | chr8_2:17153206-17153225 | None:intergenic | 45.0% | |
| GATCCTAAGAGTGAGAAACC+GGG | - | chr8_2:17153370-17153389 | Msa1237640:CDS | 45.0% | |
| TCGAAGCTATCGAACTCGTT+CGG | + | chr8_2:17153529-17153548 | None:intergenic | 45.0% | |
| !! | TGGAAAGGGACTAGTTGGAA+AGG | - | chr8_2:17152636-17152655 | Msa1237640:CDS | 45.0% |
| !! | GCTCCCAAAGTTGGTAATTG+AGG | + | chr8_2:17152685-17152704 | None:intergenic | 45.0% |
| TCTTGTCTTGCTCCCAAAGT+TGG | + | chr8_2:17152694-17152713 | None:intergenic | 45.0% | |
| AACTGGAGAACGCAAGGAAT+GGG | - | chr8_2:17153123-17153142 | Msa1237640:CDS | 45.0% | |
| TCCAAGGATTGGACGAACAA+GGG | + | chr8_2:17153206-17153225 | None:intergenic | 45.0% | |
| GATCCTAAGAGTGAGAAACC+GGG | - | chr8_2:17153370-17153389 | Msa1237640:CDS | 45.0% | |
| TCGAAGCTATCGAACTCGTT+CGG | + | chr8_2:17153529-17153548 | None:intergenic | 45.0% | |
| ! | GCAAGTGGAAAGGGACTAGT+TGG | - | chr8_2:17152631-17152650 | Msa1237640:CDS | 50.0% |
| CTTCAAGGGTCACCCTAACA+AGG | + | chr8_2:17152804-17152823 | None:intergenic | 50.0% | |
| AATGGAGCCGGTGTTTGACT+TGG | + | chr8_2:17153058-17153077 | None:intergenic | 50.0% | |
| AGATGGAACTGGAGAACGCA+AGG | - | chr8_2:17153117-17153136 | Msa1237640:CDS | 50.0% | |
| GAACTGGAGAACGCAAGGAA+TGG | - | chr8_2:17153122-17153141 | Msa1237640:CDS | 50.0% | |
| GAGAACGCAAGGAATGGGAT+AGG | - | chr8_2:17153128-17153147 | Msa1237640:CDS | 50.0% | |
| GATCTCGGAAATCCAGATGG+TGG | - | chr8_2:17153175-17153194 | Msa1237640:intron | 50.0% | |
| CTCCAAGGATTGGACGAACA+AGG | + | chr8_2:17153207-17153226 | None:intergenic | 50.0% | |
| CTTGTTCGTCCAATCCTTGG+AGG | - | chr8_2:17153205-17153224 | Msa1237640:intron | 50.0% | |
| GTGCTAGATCCTCCAAGGAT+TGG | + | chr8_2:17153217-17153236 | None:intergenic | 50.0% | |
| ACACCCGGTTTCTCACTCTT+AGG | + | chr8_2:17153376-17153395 | None:intergenic | 50.0% | |
| GAAGCTATCGAACTCGTTCG+GGG | + | chr8_2:17153527-17153546 | None:intergenic | 50.0% | |
| CGAAGCTATCGAACTCGTTC+GGG | + | chr8_2:17153528-17153547 | None:intergenic | 50.0% | |
| GATAGCTTCGATGAAGTGCG+TGG | - | chr8_2:17153538-17153557 | Msa1237640:CDS | 50.0% | |
| ! | GAAGTGCGTGGACTTTTCGA+AGG | - | chr8_2:17153550-17153569 | Msa1237640:CDS | 50.0% |
| ! | GCAAGTGGAAAGGGACTAGT+TGG | - | chr8_2:17152631-17152650 | Msa1237640:CDS | 50.0% |
| CTTCAAGGGTCACCCTAACA+AGG | + | chr8_2:17152804-17152823 | None:intergenic | 50.0% | |
| AATGGAGCCGGTGTTTGACT+TGG | + | chr8_2:17153058-17153077 | None:intergenic | 50.0% | |
| AGATGGAACTGGAGAACGCA+AGG | - | chr8_2:17153117-17153136 | Msa1237640:CDS | 50.0% | |
| GAACTGGAGAACGCAAGGAA+TGG | - | chr8_2:17153122-17153141 | Msa1237640:CDS | 50.0% | |
| GAGAACGCAAGGAATGGGAT+AGG | - | chr8_2:17153128-17153147 | Msa1237640:CDS | 50.0% | |
| GATCTCGGAAATCCAGATGG+TGG | - | chr8_2:17153175-17153194 | Msa1237640:intron | 50.0% | |
| CTCCAAGGATTGGACGAACA+AGG | + | chr8_2:17153207-17153226 | None:intergenic | 50.0% | |
| CTTGTTCGTCCAATCCTTGG+AGG | - | chr8_2:17153205-17153224 | Msa1237640:intron | 50.0% | |
| GTGCTAGATCCTCCAAGGAT+TGG | + | chr8_2:17153217-17153236 | None:intergenic | 50.0% | |
| ACACCCGGTTTCTCACTCTT+AGG | + | chr8_2:17153376-17153395 | None:intergenic | 50.0% | |
| GAAGCTATCGAACTCGTTCG+GGG | + | chr8_2:17153527-17153546 | None:intergenic | 50.0% | |
| CGAAGCTATCGAACTCGTTC+GGG | + | chr8_2:17153528-17153547 | None:intergenic | 50.0% | |
| GATAGCTTCGATGAAGTGCG+TGG | - | chr8_2:17153538-17153557 | Msa1237640:CDS | 50.0% | |
| ! | GAAGTGCGTGGACTTTTCGA+AGG | - | chr8_2:17153550-17153569 | Msa1237640:CDS | 50.0% |
| GCCCTTGTTCGTCCAATCCT+TGG | - | chr8_2:17153202-17153221 | Msa1237640:intron | 55.0% | |
| GATGGGTGCTAGATCCTCCA+AGG | + | chr8_2:17153222-17153241 | None:intergenic | 55.0% | |
| TACCACTTCTAACCCTGCGC+GGG | + | chr8_2:17153249-17153268 | None:intergenic | 55.0% | |
| CTACCACTTCTAACCCTGCG+CGG | + | chr8_2:17153250-17153269 | None:intergenic | 55.0% | |
| ! | GTGCGTGGACTTTTCGAAGG+TGG | - | chr8_2:17153553-17153572 | Msa1237640:CDS | 55.0% |
| GCCCTTGTTCGTCCAATCCT+TGG | - | chr8_2:17153202-17153221 | Msa1237640:intron | 55.0% | |
| GATGGGTGCTAGATCCTCCA+AGG | + | chr8_2:17153222-17153241 | None:intergenic | 55.0% | |
| TACCACTTCTAACCCTGCGC+GGG | + | chr8_2:17153249-17153268 | None:intergenic | 55.0% | |
| CTACCACTTCTAACCCTGCG+CGG | + | chr8_2:17153250-17153269 | None:intergenic | 55.0% | |
| ! | GTGCGTGGACTTTTCGAAGG+TGG | - | chr8_2:17153553-17153572 | Msa1237640:CDS | 55.0% |
| CTTCTAACCCTGCGCGGGTA+GGG | + | chr8_2:17153244-17153263 | None:intergenic | 60.0% | |
| ACTTCTAACCCTGCGCGGGT+AGG | + | chr8_2:17153245-17153264 | None:intergenic | 60.0% | |
| TACCCGCGCAGGGTTAGAAG+TGG | - | chr8_2:17153244-17153263 | Msa1237640:intron | 60.0% | |
| CTTCTAACCCTGCGCGGGTA+GGG | + | chr8_2:17153244-17153263 | None:intergenic | 60.0% | |
| ACTTCTAACCCTGCGCGGGT+AGG | + | chr8_2:17153245-17153264 | None:intergenic | 60.0% | |
| TACCCGCGCAGGGTTAGAAG+TGG | - | chr8_2:17153244-17153263 | Msa1237640:intron | 60.0% | |
| !! | ACAAGGGCGTCGCCACCATC+TGG | + | chr8_2:17153190-17153209 | None:intergenic | 65.0% |
| AACCCTGCGCGGGTAGGGAT+GGG | + | chr8_2:17153239-17153258 | None:intergenic | 65.0% | |
| TAACCCTGCGCGGGTAGGGA+TGG | + | chr8_2:17153240-17153259 | None:intergenic | 65.0% | |
| !! | ACAAGGGCGTCGCCACCATC+TGG | + | chr8_2:17153190-17153209 | None:intergenic | 65.0% |
| AACCCTGCGCGGGTAGGGAT+GGG | + | chr8_2:17153239-17153258 | None:intergenic | 65.0% | |
| TAACCCTGCGCGGGTAGGGA+TGG | + | chr8_2:17153240-17153259 | None:intergenic | 65.0% | |
| CACCCATCCCTACCCGCGCA+GGG | - | chr8_2:17153234-17153253 | Msa1237640:intron | 70.0% | |
| CACCCATCCCTACCCGCGCA+GGG | - | chr8_2:17153234-17153253 | Msa1237640:intron | 70.0% | |
| GCACCCATCCCTACCCGCGC+AGG | - | chr8_2:17153233-17153252 | Msa1237640:intron | 75.0% | |
| GCACCCATCCCTACCCGCGC+AGG | - | chr8_2:17153233-17153252 | Msa1237640:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 17152628 | 17153582 | 17152628 | ID=Msa1237640;Name=Msa1237640 |
| chr8_2 | mRNA | 17152628 | 17153582 | 17152628 | ID=Msa1237640-mRNA-1;Parent=Msa1237640;Name=Msa1237640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.66|1|0.5|0.33|3|0|248 |
| chr8_2 | exon | 17152628 | 17152839 | 17152628 | ID=Msa1237640-mRNA-1:exon:6465;Parent=Msa1237640-mRNA-1 |
| chr8_2 | exon | 17152924 | 17153164 | 17152924 | ID=Msa1237640-mRNA-1:exon:6464;Parent=Msa1237640-mRNA-1 |
| chr8_2 | exon | 17153292 | 17153582 | 17153292 | ID=Msa1237640-mRNA-1:exon:6463;Parent=Msa1237640-mRNA-1 |
| chr8_2 | CDS | 17153292 | 17153582 | 17153292 | ID=Msa1237640-mRNA-1:cds;Parent=Msa1237640-mRNA-1 |
| chr8_2 | CDS | 17152924 | 17153164 | 17152924 | ID=Msa1237640-mRNA-1:cds;Parent=Msa1237640-mRNA-1 |
| chr8_2 | CDS | 17152628 | 17152839 | 17152628 | ID=Msa1237640-mRNA-1:cds;Parent=Msa1237640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
