AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1275840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1275840 MtrunA17_Chr8g0342951 96.313 868 32 0 1 868 1 868 0.0 1713
Msa1275840 MtrunA17_Chr8g0342971 86.782 870 113 2 1 868 1 870 0.0 1586
Msa1275840 MtrunA17_Chr8g0344211 84.793 868 132 0 1 868 1 868 0.0 1533
Msa1275840 MtrunA17_Chr8g0343011 82.529 870 145 2 1 868 1 865 0.0 1498
Msa1275840 MtrunA17_Chr8g0342891 80.233 860 166 1 9 868 6 861 0.0 1467
Msa1275840 MtrunA17_Chr8g0342921 77.931 870 189 3 1 868 1 869 0.0 1428
Msa1275840 MtrunA17_Chr8g0342931 83.333 750 125 0 119 868 1 750 0.0 1326
Msa1275840 MtrunA17_Chr8g0342901 73.812 863 183 7 9 868 6 828 0.0 1309
Msa1275840 MtrunA17_Chr2g0329911 71.001 869 243 3 1 868 1 861 0.0 1290
Msa1275840 MtrunA17_Chr8g0342881 71.062 857 241 2 12 868 7 856 0.0 1275
Msa1275840 MtrunA17_Chr2g0329901 66.667 864 283 3 5 868 5 863 0.0 1203
Msa1275840 MtrunA17_Chr5g0406871 65.323 868 292 7 7 868 3 867 0.0 1190
Msa1275840 MtrunA17_Chr8g0343021 65.323 868 289 7 7 868 3 864 0.0 1187
Msa1275840 MtrunA17_Chr8g0343031 64.327 869 294 6 8 868 5 865 0.0 1167
Msa1275840 MtrunA17_Chr3g0120071 64.079 863 300 5 8 868 4 858 0.0 1159
Msa1275840 MtrunA17_Chr8g0343001 64.685 858 241 8 14 868 9 807 0.0 1124
Msa1275840 MtrunA17_Chr8g0342991 64.959 859 237 10 14 868 9 807 0.0 1117
Msa1275840 MtrunA17_Chr8g0342981 64.477 822 247 10 62 868 32 823 0.0 1060
Msa1275840 MtrunA17_Chr1g0191921 57.688 865 332 7 14 868 18 858 0.0 1008
Msa1275840 MtrunA17_Chr7g0272791 56.401 867 342 9 15 868 24 867 0.0 1000
Msa1275840 MtrunA17_Chr1g0205611 55.798 871 345 9 15 868 9 856 0.0 999
Msa1275840 MtrunA17_Chr8g0344241 87.089 395 51 0 474 868 67 461 0.0 731
Msa1275840 MtrunA17_Chr8g0344241 81.667 60 11 0 294 353 9 68 2.02e-23 104
Msa1275840 MtrunA17_Chr8g0344201 46.041 821 426 11 57 867 113 926 0.0 723
Msa1275840 MtrunA17_Chr3g0118651 43.130 837 433 15 53 868 89 903 0.0 657
Msa1275840 MtrunA17_Chr8g0338451 42.770 823 426 12 56 851 46 850 0.0 652
Msa1275840 MtrunA17_Chr8g0377101 42.399 842 445 17 50 868 92 916 0.0 640
Msa1275840 MtrunA17_Chr3g0118641 42.410 830 449 16 53 868 88 902 0.0 637
Msa1275840 MtrunA17_Chr4g0033171 46.121 709 368 10 168 868 23 725 0.0 618
Msa1275840 MtrunA17_Chr4g0047281 40.667 809 440 11 67 865 114 892 0.0 600
Msa1275840 MtrunA17_Chr3g0118621 44.198 767 410 12 113 868 106 865 0.0 595
Msa1275840 MtrunA17_Chr6g0471951 41.061 509 254 6 322 826 11 477 3.87e-130 399
Msa1275840 MtrunA17_Chr7g0218231 61.538 117 44 1 522 637 16 132 5.07e-43 152
Msa1275840 MtrunA17_Chr6g0468081 56.180 89 38 1 550 637 1 89 1.09e-26 104
Msa1275840 MtrunA17_Chr4g0047271 39.560 91 55 0 777 867 1 91 2.15e-16 75.1
Msa1275840 MtrunA17_Chr3g0137991 35.200 125 65 3 744 868 1 109 8.28e-15 71.2
Msa1275840 MtrunA17_Chr7g0272781 42.857 63 35 1 760 822 8 69 8.31e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1275840 AT1G55020.1 55.811 869 343 10 13 868 19 859 0.0 993
Msa1275840 AT3G22400.1 54.566 876 354 10 14 868 34 886 0.0 987
Msa1275840 AT1G72520.1 44.336 821 440 10 57 868 114 926 0.0 706
Msa1275840 AT1G17420.1 44.458 821 438 11 57 868 108 919 0.0 694
Msa1275840 AT3G45140.1 42.771 830 429 19 57 868 95 896 0.0 636
Msa1275840 AT3G45140.2 44.473 769 391 17 118 868 4 754 0.0 624
Msa1275840 AT1G67560.1 41.312 823 449 15 64 868 111 917 0.0 605

Find 238 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATCAAATGCAGCCTTAA+TGG 0.190018 8_3:-10074670 Msa1275840:three_prime_UTR
CTTCTGATGGACTAGAAATA+TGG 0.237016 8_3:-10075538 Msa1275840:CDS
TTCACCAACCCATGACTTAA+TGG 0.254314 8_3:+10075511 None:intergenic
AACCTCTTGAAGGCTTCTTT+TGG 0.268560 8_3:+10075035 None:intergenic
AAGCTTCCACCATCCTTATA+TGG 0.290240 8_3:-10075340 Msa1275840:CDS
CAATTGGCTCGTCAAATTCT+TGG 0.291064 8_3:-10077624 Msa1275840:CDS
GTATGTACAATCTATTGTTT+TGG 0.298876 8_3:+10076552 None:intergenic
ATTCTGAACTCCAAGCATTC+TGG 0.306722 8_3:-10075445 Msa1275840:CDS
TTCCTGAAATAAAACCATTA+AGG 0.307697 8_3:+10074656 None:intergenic
GCTTAAATGTATAATATCTT+AGG 0.309024 8_3:+10079547 None:intergenic
TATATACCTTGAATCACTTT+TGG 0.314352 8_3:+10077097 None:intergenic
TGGCTATCTAGCTTGCTCTT+TGG 0.332936 8_3:+10076794 None:intergenic
AATTGGCTCGTCAAATTCTT+GGG 0.333617 8_3:-10077623 Msa1275840:CDS
GTCAATCCTTCCTCGCTAGA+AGG 0.335173 8_3:+10074906 None:intergenic
AACAGTATCTCCATCTAAAA+TGG 0.337794 8_3:-10074867 Msa1275840:exon
CTTCCAAGAGATGAATCATT+TGG 0.339142 8_3:-10077367 Msa1275840:CDS
TCAGTAAGAGTATCATTCTT+TGG 0.350791 8_3:+10075152 None:intergenic
TATCTCATATGGTTCAAATA+TGG 0.357066 8_3:-10074628 Msa1275840:intron
GCTTCAACACCTTCACTTGC+GGG 0.358408 8_3:+10076347 None:intergenic
CTTCTTTCCAAACCTCTTGA+AGG 0.358888 8_3:+10075025 None:intergenic
GAAGAGTTGAAGACTTTAAG+AGG 0.362440 8_3:-10077732 Msa1275840:CDS
GACAGTGACATGGGAATTCC+TGG 0.363962 8_3:-10078182 Msa1275840:CDS
AAAGAAGCCTTCAAGAGGTT+TGG 0.368065 8_3:-10075032 Msa1275840:CDS
CACCCTCAAGGTGATAGTTT+TGG 0.371667 8_3:-10076392 Msa1275840:CDS
GCCAATTGAGGTTTCGAGTC+AGG 0.371804 8_3:+10077639 None:intergenic
TTGTCCTCAAATAGGTCTTC+TGG 0.375950 8_3:+10075180 None:intergenic
ACCCGCTCTTTCCATATTTG+AGG 0.383986 8_3:-10076517 Msa1275840:CDS
ACAGTGACCCCACCCATGTT+TGG 0.384996 8_3:+10076725 None:intergenic
CTATCTAGCTTGCTCTTTGG+TGG 0.385775 8_3:+10076797 None:intergenic
TTATGATGTCTACAATGATT+TGG 0.388585 8_3:-10077667 Msa1275840:CDS
GTTCTTCCCCTTCGAGGGTA+AGG 0.388654 8_3:+10077585 None:intergenic
TCCACTTTGTTTGCAACTCA+TGG 0.389443 8_3:-10078076 Msa1275840:CDS
TGGTGTGATTGTCCTCAAAT+AGG 0.391613 8_3:+10075172 None:intergenic
GTGCTGAAGCAATCCATATA+AGG 0.392721 8_3:+10075327 None:intergenic
CATTCGTCATAGCAACAAAT+AGG 0.394550 8_3:-10076141 Msa1275840:CDS
GACACTGCCACTTCCTTCTT+AGG 0.397476 8_3:-10079346 Msa1275840:CDS
CAAGTTCTTTCCAGAATGCT+TGG 0.398414 8_3:+10075435 None:intergenic
CTGCTGTTGTTTACAAGGAT+TGG 0.398565 8_3:-10075967 Msa1275840:CDS
AGTTCCTTGAACAATGGTAT+TGG 0.400202 8_3:+10077160 None:intergenic
AGCATTAAAGATGACTTCAT+TGG 0.402361 8_3:-10079527 Msa1275840:exon
CACCATAACTAAAGAAAACT+TGG 0.414273 8_3:-10076750 Msa1275840:CDS
TATGATGTCTACAATGATTT+GGG 0.419822 8_3:-10077666 Msa1275840:CDS
CTTCATGCAGCTGTTAACTT+TGG 0.424839 8_3:-10075305 Msa1275840:CDS
CTTGTGGGGAAATTATGCTT+TGG 0.426043 8_3:-10075996 Msa1275840:CDS
TTATAGTAGTTGATGAGATT+AGG 0.428042 8_3:+10079619 None:intergenic
CTGCCGGTTCTTCCCCTTCG+AGG 0.429096 8_3:+10077579 None:intergenic
CAAGAGGTTTGGAAAGAAGT+TGG 0.434558 8_3:-10075021 Msa1275840:CDS
TATTGAATCAACTTTCTTGT+GGG 0.435079 8_3:-10076011 Msa1275840:CDS
TTTGCAAGGGAGATGATTGC+TGG 0.437702 8_3:-10076947 Msa1275840:CDS
TCTTGTCTATAGTACACTAA+TGG 0.438231 8_3:+10077753 None:intergenic
GGAAGCAAGAGTTTATGAAT+AGG 0.438914 8_3:+10076100 None:intergenic
CCTTGACAAGACCTCTATAA+TGG 0.440236 8_3:+10075124 None:intergenic
ATAGAATTGAAGGTGACAAT+TGG 0.444518 8_3:-10075073 Msa1275840:CDS
GGTGCTATTGGTGATGTTGC+TGG 0.444661 8_3:-10079379 Msa1275840:CDS
TACCCTCGAAGGGGAAGAAC+CGG 0.444987 8_3:-10077582 Msa1275840:CDS
GGCAAGTAAACATTGCTAAC+AGG 0.445982 8_3:+10076368 None:intergenic
AAGGCTGCATTTGATACAAC+AGG 0.447930 8_3:+10074675 None:intergenic
TGTCCAAATGATTCATCTCT+TGG 0.449045 8_3:+10077364 None:intergenic
CCACCACCAAAAGTGATTCA+AGG 0.452144 8_3:-10077103 Msa1275840:intron
ACAATGGTATTGGACTAATC+TGG 0.453552 8_3:+10077170 None:intergenic
CGGAGACCAGTAGGAGAGGC+TGG 0.454121 8_3:+10075587 None:intergenic
ATTATCTTGCAAGAAAAGAA+TGG 0.455567 8_3:+10076454 None:intergenic
GGACTTCGAGTCTCACTGTT+AGG 0.459026 8_3:+10077400 None:intergenic
GAGGATCCAGCCTCTCCTAC+TGG 0.459624 8_3:-10075593 Msa1275840:CDS
GAAGCAAGAGTTTATGAATA+GGG 0.463724 8_3:+10076101 None:intergenic
GCCTGACTCGAAACCTCAAT+TGG 0.465501 8_3:-10077640 Msa1275840:CDS
TAGTCCAATACCATTGTTCA+AGG 0.470489 8_3:-10077164 Msa1275840:CDS
GGGTGGGGTCACTGTAGAAC+AGG 0.470802 8_3:-10076717 Msa1275840:intron
CAAAGCCCTACTGGTATCAT+TGG 0.470844 8_3:-10079412 Msa1275840:CDS
GAAGGGTAAAGCAGAGTGTA+TGG 0.472663 8_3:+10074924 None:intergenic
AAGTGGATGGATCCATGGTT+TGG 0.473548 8_3:+10078092 None:intergenic
ACTTTAAGAGGGGATGGAAC+AGG 0.476377 8_3:-10077720 Msa1275840:CDS
GGTGGTGCCATAGGTGCTAT+TGG 0.479135 8_3:-10079391 Msa1275840:CDS
TTTGTCTCCCAATGTTGGTA+TGG 0.481893 8_3:+10078235 None:intergenic
TACTCAGGTGATCCTTTCTC+AGG 0.482761 8_3:+10075224 None:intergenic
GGAACTGGAAAAGGAAAAGT+TGG 0.483177 8_3:-10078290 Msa1275840:CDS
AACAGGAGAGCGCAAGGAAT+GGG 0.484527 8_3:-10077703 Msa1275840:CDS
ATGATGAGACATTGAGGAAT+CGG 0.490739 8_3:-10074965 Msa1275840:CDS
TGCTTCAACACCTTCACTTG+CGG 0.491444 8_3:+10076346 None:intergenic
CTTTACCCTTCTAGCGAGGA+AGG 0.492306 8_3:-10074912 Msa1275840:CDS
TACCTTGGAGATAGAATTGA+AGG 0.492386 8_3:-10075083 Msa1275840:CDS
CATACCAATGGCTGACAAGT+TGG 0.492461 8_3:+10076270 None:intergenic
TGCCTAATGATCTAATCAAA+AGG 0.492577 8_3:-10075925 Msa1275840:intron
GTGTGGCCTGCTTAGTTCAA+TGG 0.497006 8_3:+10076412 None:intergenic
AATGGAGCCGGTGTTTCACT+TGG 0.497543 8_3:+10077771 None:intergenic
ATCAGTTTGGCTCCTTGCCA+AGG 0.497881 8_3:-10076324 Msa1275840:CDS
CTTACCTCCATACCAACATT+GGG 0.499072 8_3:-10078242 Msa1275840:CDS
AAGAGTTGAAGACTTTAAGA+GGG 0.499352 8_3:-10077731 Msa1275840:CDS
GCTGACAAGTTGGTGATAGC+AGG 0.499609 8_3:+10076280 None:intergenic
ACTGCAGCTCAAAGCCCTAC+TGG 0.500476 8_3:-10079421 Msa1275840:CDS
GATTATCCTTATGCTTCTGA+TGG 0.500902 8_3:-10075551 Msa1275840:CDS
AACATCACCAATAGCACCTA+TGG 0.501370 8_3:+10079384 None:intergenic
AGCTATAGAACGGCCTAAGA+AGG 0.502528 8_3:+10079333 None:intergenic
TGGTCTCCGCCTTCTGATAG+AGG 0.502669 8_3:-10075573 Msa1275840:CDS
TGCCGGTTCTTCCCCTTCGA+GGG 0.503677 8_3:+10077580 None:intergenic
AATGTCTGCTGTTGTTTACA+AGG 0.504818 8_3:-10075972 Msa1275840:CDS
TTCTGATGGACTAGAAATAT+GGG 0.506179 8_3:-10075537 Msa1275840:CDS
AAGGTGTTGAAGCATCAGTT+TGG 0.507198 8_3:-10076337 Msa1275840:CDS
AGAATTTGACGAGCCAATTG+AGG 0.508375 8_3:+10077627 None:intergenic
TTATTGAATCAACTTTCTTG+TGG 0.508477 8_3:-10076012 Msa1275840:CDS
TCTTGAAAGGTGTTAAACTC+GGG 0.511572 8_3:+10077244 None:intergenic
TGGAAAGAACTTGTAGAGGT+TGG 0.513323 8_3:-10075425 Msa1275840:CDS
TTGAAGACTTTAAGAGGGGA+TGG 0.514199 8_3:-10077726 Msa1275840:CDS
TCTTACCTCCATACCAACAT+TGG 0.515526 8_3:-10078243 Msa1275840:CDS
GGTATCATTGGTGGTGCCAT+AGG 0.517163 8_3:-10079400 Msa1275840:CDS
TACTGACTTGACCATTATAG+AGG 0.518055 8_3:-10075135 Msa1275840:CDS
CACTGGCCATTGAACTAAGC+AGG 0.519121 8_3:-10076418 Msa1275840:CDS
GACCAAAACTATCACCTTGA+GGG 0.520938 8_3:+10076390 None:intergenic
TGGAAAAGGAAAAGTTGGAC+AGG 0.521456 8_3:-10078285 Msa1275840:CDS
GAACAGGAGAGCGCAAGGAA+TGG 0.522042 8_3:-10077704 Msa1275840:CDS
TCTAGTCCATCAGAAGCATA+AGG 0.525524 8_3:+10075545 None:intergenic
AGAAGATTCATGCCTGAGAA+AGG 0.525970 8_3:-10075236 Msa1275840:CDS
TTCTTCCCCTTCGAGGGTAA+GGG 0.526455 8_3:+10077586 None:intergenic
AGAAAACTTGGAGCCAAACA+TGG 0.527594 8_3:-10076738 Msa1275840:CDS
ATCACCAACTTGTCAGCCAT+TGG 0.528699 8_3:-10076274 Msa1275840:intron
TGCACTTGCACGAAATGTCT+TGG 0.528941 8_3:-10076050 Msa1275840:CDS
AGAGTGTATGGCATCTTCAC+AGG 0.532936 8_3:+10074936 None:intergenic
ACAATGTATTAGTTCAAAAG+AGG 0.533299 8_3:+10079645 None:intergenic
CACCTTCAATTCTATCTCCA+AGG 0.533418 8_3:+10075081 None:intergenic
GATTGGAATTTCATTGAGCA+AGG 0.534618 8_3:-10075950 Msa1275840:CDS
AGCCCTACTGGTATCATTGG+TGG 0.535542 8_3:-10079409 Msa1275840:CDS
ATCTTGAAAGGTGTTAAACT+CGG 0.539742 8_3:+10077243 None:intergenic
GCTTGTGTCTTGTAACCATA+GGG 0.540521 8_3:+10079584 None:intergenic
TCCTCAAATATGGAAAGAGC+GGG 0.540806 8_3:+10076516 None:intergenic
CGATTTCCCTTACCCTCGAA+GGG 0.541927 8_3:-10077592 Msa1275840:CDS
CGGAAAAGTTCCTTGAACAA+TGG 0.542049 8_3:+10077154 None:intergenic
CTATTTGTTGCTATGACGAA+TGG 0.543162 8_3:+10076142 None:intergenic
AAACTATCACCTTGAGGGTG+TGG 0.543185 8_3:+10076395 None:intergenic
TAATGGAACTTTGAAGCCAC+TGG 0.543868 8_3:-10076435 Msa1275840:CDS
ATTTACAACAACAAAAGCCT+TGG 0.548619 8_3:+10076307 None:intergenic
AAGAATGGTTCTAGTAGCAT+AGG 0.548654 8_3:+10076469 None:intergenic
CCGCATCTTCTTTGCCAACA+AGG 0.548836 8_3:-10078024 Msa1275840:intron
TAAATACGAACCATTCCCTA+TGG 0.550679 8_3:-10079599 Msa1275840:five_prime_UTR
TGTCTTGTAACCATAGGGAA+TGG 0.551576 8_3:+10079589 None:intergenic
TCTCTTTGATAAGCACGAAA+AGG 0.553585 8_3:-10079497 Msa1275840:CDS
AAACAAAGTGGATGGATCCA+TGG 0.554216 8_3:+10078087 None:intergenic
ATTGGCTCGTCAAATTCTTG+GGG 0.554768 8_3:-10077622 Msa1275840:CDS
GCTTCTGATGAGCAATACCT+TGG 0.555714 8_3:-10075098 Msa1275840:CDS
ATCAGAAGGCGGAGACCAGT+AGG 0.558642 8_3:+10075578 None:intergenic
AACTTTGGACAATATCCGTA+TGG 0.559068 8_3:-10075290 Msa1275840:CDS
GGATGGAACAGGAGAGCGCA+AGG 0.559613 8_3:-10077709 Msa1275840:CDS
TACATCAAGAATTATATGCA+AGG 0.560399 8_3:-10078152 Msa1275840:CDS
ATTGAATCAACTTTCTTGTG+GGG 0.560869 8_3:-10076010 Msa1275840:CDS
TATGGGCTGCCATTAAGTCA+TGG 0.562237 8_3:-10075520 Msa1275840:CDS
CATCAGTCTGCCATGCAGAA+TGG 0.563367 8_3:+10076975 None:intergenic
CTGCTTAGTTCAATGGCCAG+TGG 0.566870 8_3:+10076419 None:intergenic
TCAATCCTTCCTCGCTAGAA+GGG 0.568116 8_3:+10074907 None:intergenic
CAAATGATTCATCTCTTGGA+AGG 0.568278 8_3:+10077368 None:intergenic
ACTTGGAGCCAAACATGGGT+GGG 0.569230 8_3:-10076733 Msa1275840:CDS
CTATAGTACACTAATGGAGC+CGG 0.569261 8_3:+10077759 None:intergenic
ATGGGCTGCCATTAAGTCAT+GGG 0.569354 8_3:-10075519 Msa1275840:CDS
TGAGTTGCAAACAAAGTGGA+TGG 0.569767 8_3:+10078079 None:intergenic
GCGATTTCCCTTACCCTCGA+AGG 0.569933 8_3:-10077593 Msa1275840:CDS
GTCTCCCAATGTTGGTATGG+AGG 0.572486 8_3:+10078238 None:intergenic
AGAGTTGAAGACTTTAAGAG+GGG 0.573240 8_3:-10077730 Msa1275840:CDS
TGCTTGTGTCTTGTAACCAT+AGG 0.574107 8_3:+10079583 None:intergenic
GAGACATTGAGGAATCGGTA+TGG 0.574624 8_3:-10074960 Msa1275840:CDS
ATTTAGAGGAGTAGCTGTTG+AGG 0.574648 8_3:-10075612 Msa1275840:intron
GAGAGAGCGCACATCTTGAA+AGG 0.575061 8_3:+10077231 None:intergenic
AGAACGGCCTAAGAAGGAAG+TGG 0.575241 8_3:+10079339 None:intergenic
ATCTCCATCTAAAATGGTCA+TGG 0.575487 8_3:-10074861 Msa1275840:exon
AACTTGGAGCCAAACATGGG+TGG 0.576306 8_3:-10076734 Msa1275840:CDS
TTGCAAGGGAGATGATTGCT+GGG 0.576355 8_3:-10076946 Msa1275840:CDS
GTTTACTTGCCCGCAAGTGA+AGG 0.576493 8_3:-10076356 Msa1275840:CDS
AAGATGACTTCATTGGTGAA+AGG 0.578712 8_3:-10079520 Msa1275840:CDS
AATAAATGCAAGTGAGACAA+AGG 0.579607 8_3:-10076492 Msa1275840:CDS
TCCATGAGTTGCAAACAAAG+TGG 0.581030 8_3:+10078075 None:intergenic
TGATAAGCACGAAAAGGTGA+AGG 0.581687 8_3:-10079491 Msa1275840:CDS
TTCCTCAAATATGGAAAGAG+CGG 0.581997 8_3:+10076515 None:intergenic
AGCCAAAAGAAGCCTTCAAG+AGG 0.582036 8_3:-10075037 Msa1275840:CDS
GAGCCGGTGTTTCACTTGGA+AGG 0.583942 8_3:+10077775 None:intergenic
CTTGGAGCCAAACATGGGTG+GGG 0.584070 8_3:-10076732 Msa1275840:CDS
CGATCGTAGGTAAGAAGTGA+GGG 0.588935 8_3:+10074794 None:intergenic
GGAACAATGATGAGACATTG+AGG 0.591650 8_3:-10074971 Msa1275840:CDS
TGCTTTGAATAACAGTGAGA+AGG 0.591999 8_3:-10074826 Msa1275840:three_prime_UTR
GTAACTACAGATCTCAATTG+AGG 0.593972 8_3:+10077283 None:intergenic
TGAGTATGATGAGCTTGCTA+AGG 0.595579 8_3:-10075207 Msa1275840:CDS
GCACCACCAATGATACCAGT+AGG 0.595832 8_3:+10079406 None:intergenic
CTTCAAGTGTCAAACTCACA+AGG 0.596098 8_3:+10078120 None:intergenic
GGACAGGAAACATTTCTGAA+AGG 0.599176 8_3:-10078269 Msa1275840:CDS
ATATATAATAACACGATCGT+AGG 0.602473 8_3:+10074781 None:intergenic
CAACAACAAAAGCCTTGGCA+AGG 0.602926 8_3:+10076312 None:intergenic
AAGGATAATCCTCTATCAGA+AGG 0.603529 8_3:+10075564 None:intergenic
TTTGAATGGGACAGTGACAT+GGG 0.604319 8_3:-10078191 Msa1275840:CDS
TTCATTGTGTCACGATAATG+TGG 0.604329 8_3:+10076079 None:intergenic
CTAAGCAGGCCACACCCTCA+AGG 0.605346 8_3:-10076404 Msa1275840:CDS
TTAGCAAGCTCATCATACTC+AGG 0.608098 8_3:+10075209 None:intergenic
TTAAGGATATATCCTCCATA+CGG 0.608467 8_3:+10075275 None:intergenic
CTTGAAGATATTCCAAACCA+TGG 0.608577 8_3:-10078104 Msa1275840:CDS
GTGCTTGTTCACCATCAGAT+CGG 0.610157 8_3:+10077134 None:intergenic
GACTGATGAGGAATTTGCAA+GGG 0.610600 8_3:-10076960 Msa1275840:CDS
CTTGAAAGGTGTTAAACTCG+GGG 0.611801 8_3:+10077245 None:intergenic
ACTACCAGAAGACCTATTTG+AGG 0.611884 8_3:-10075184 Msa1275840:CDS
CGAATGGCTCAACAACAGCA+TGG 0.613252 8_3:+10076158 None:intergenic
AACAAATAGGCATCTTAGTG+TGG 0.616014 8_3:-10076128 Msa1275840:CDS
TTGGCTCGTCAAATTCTTGG+GGG 0.616447 8_3:-10077621 Msa1275840:CDS
ATTCTGGAAAGAACTTGTAG+AGG 0.619472 8_3:-10075429 Msa1275840:CDS
AAATGTCTTGGTCAATGCAG+AGG 0.620032 8_3:-10076038 Msa1275840:CDS
AATATGGAAAGAGCGGGTCG+TGG 0.621020 8_3:+10076522 None:intergenic
AGCAATCCATATAAGGATGG+TGG 0.623898 8_3:+10075334 None:intergenic
ATTAGTGCTACAAGTGCTGA+TGG 0.624947 8_3:-10079301 Msa1275840:intron
AGACTGATGAGGAATTTGCA+AGG 0.627020 8_3:-10076961 Msa1275840:CDS
GAACTTGTAGAGGTTGGTCA+TGG 0.628028 8_3:-10075419 Msa1275840:CDS
GATAAGCACGAAAAGGTGAA+GGG 0.628987 8_3:-10079490 Msa1275840:CDS
AATGTCTTGGTCAATGCAGA+GGG 0.629733 8_3:-10076037 Msa1275840:CDS
GAATGGCTCAACAACAGCAT+GGG 0.631116 8_3:+10076159 None:intergenic
AAGGCGGAGACCAGTAGGAG+AGG 0.631668 8_3:+10075583 None:intergenic
TTCTGCATGGCAGACTGATG+AGG 0.631772 8_3:-10076972 Msa1275840:CDS
GAGGAAGGATTGACTTGCAG+AGG 0.631778 8_3:-10074897 Msa1275840:CDS
GTGCGCTCTCTCTACGAGGG+TGG 0.634384 8_3:-10077220 Msa1275840:CDS
CCTTGTTGGCAAAGAAGATG+CGG 0.636835 8_3:+10078024 None:intergenic
AACAGGACTATAATGTTACA+AGG 0.637286 8_3:+10074692 None:intergenic
TCAACTTGAGAGCTATAGAA+CGG 0.637447 8_3:+10079323 None:intergenic
GTTTAAGATGCAAACTCGTG+AGG 0.640174 8_3:-10075372 Msa1275840:CDS
ATCTGGCTTAGTACATCAGT+AGG 0.640323 8_3:+10077187 None:intergenic
CACCACCAATGATACCAGTA+GGG 0.641870 8_3:+10079407 None:intergenic
TGAAGCAATCCATATAAGGA+TGG 0.642489 8_3:+10075331 None:intergenic
ACGATCGTAGGTAAGAAGTG+AGG 0.645921 8_3:+10074793 None:intergenic
CCATTATAGAGGTCTTGTCA+AGG 0.646315 8_3:-10075124 Msa1275840:CDS
AGATGTGCGCTCTCTCTACG+AGG 0.646720 8_3:-10077224 Msa1275840:CDS
ATACCTTCCAAGTGAAACAC+CGG 0.647734 8_3:-10077778 Msa1275840:CDS
GAAAACTTGGAGCCAAACAT+GGG 0.647756 8_3:-10076737 Msa1275840:CDS
GGACCAAAACTATCACCTTG+AGG 0.648019 8_3:+10076389 None:intergenic
TCTCTTGGAAGGTAAACAGT+GGG 0.653344 8_3:+10077379 None:intergenic
ATCTCTTGGAAGGTAAACAG+TGG 0.662459 8_3:+10077378 None:intergenic
TTTGGACAATATCCGTATGG+AGG 0.662709 8_3:-10075287 Msa1275840:CDS
GTTGGCAAAGAAGATGCGGT+CGG 0.663469 8_3:+10078028 None:intergenic
GAACAGTGGACCATTCTGCA+TGG 0.669132 8_3:-10076985 Msa1275840:intron
TCTGCTTTACCCTTCTAGCG+AGG 0.672151 8_3:-10074916 Msa1275840:CDS
GATAATCCTCTATCAGAAGG+CGG 0.677768 8_3:+10075567 None:intergenic
CGAAAAGGTGAAGGGAACTG+TGG 0.680100 8_3:-10079482 Msa1275840:CDS
GCTGCCATTAAGTCATGGGT+TGG 0.682139 8_3:-10075515 Msa1275840:CDS
GATGTGCGCTCTCTCTACGA+GGG 0.685367 8_3:-10077223 Msa1275840:CDS
GATTTCCCTTACCCTCGAAG+GGG 0.685881 8_3:-10077591 Msa1275840:CDS
ACTTAAAGAATGCCACATGG+TGG 0.703250 8_3:-10075394 Msa1275840:CDS
TTGCATCTTAAACCACCATG+TGG 0.713418 8_3:+10075382 None:intergenic
TGCAAGGGAGATGATTGCTG+GGG 0.719674 8_3:-10076945 Msa1275840:CDS
GTGACTTAAAGAATGCCACA+TGG 0.775897 8_3:-10075397 Msa1275840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAAATTGAAAAAGAT+TGG + chr8_3:10075503-10075522 None:intergenic 10.0%
!!! AAATAATTTCAATATTTTAG+TGG + chr8_3:10075822-10075841 None:intergenic 10.0%
!!! TTTTGTATGAAATATATTAT+TGG + chr8_3:10077243-10077262 None:intergenic 10.0%
!!! TTTTTAATTAAACTAATGGT+TGG - chr8_3:10075047-10075066 Msa1275840:CDS 15.0%
!! TGCATAATATAATATATGTA+GGG + chr8_3:10075127-10075146 None:intergenic 15.0%
!! TTGCATAATATAATATATGT+AGG + chr8_3:10075128-10075147 None:intergenic 15.0%
!! TTCAAATATAAACAAATAGA+GGG + chr8_3:10075443-10075462 None:intergenic 15.0%
!!! CTCTTAATAGATTTTAAAAT+TGG - chr8_3:10075468-10075487 Msa1275840:CDS 15.0%
!!! AATACTGACAATTAAAATTT+TGG + chr8_3:10075638-10075657 None:intergenic 15.0%
!!! ATATTGGTTATAAAATAATC+AGG - chr8_3:10075784-10075803 Msa1275840:intron 15.0%
!!! TTTCAGTATTAATTTTGAAT+GGG - chr8_3:10076088-10076107 Msa1275840:CDS 15.0%
!!! CATACAAAAAATATGTTTTA+GGG + chr8_3:10078637-10078656 None:intergenic 15.0%
!!! ACATACAAAAAATATGTTTT+AGG + chr8_3:10078638-10078657 None:intergenic 15.0%
!! GCTTAAATGTATAATATCTT+AGG + chr8_3:10074748-10074767 None:intergenic 20.0%
!! ATAAAAAATGAGAAAGAGAA+AGG + chr8_3:10075025-10075044 None:intergenic 20.0%
!! GCATAATATAATATATGTAG+GGG + chr8_3:10075126-10075145 None:intergenic 20.0%
!! AGAAATAAATAGAGTGAAAA+AGG + chr8_3:10075182-10075201 None:intergenic 20.0%
!! ATATATCTACTGTGTATTAA+AGG - chr8_3:10075230-10075249 Msa1275840:CDS 20.0%
!!! ATTTTGTCATTTGGTATAAA+TGG - chr8_3:10075339-10075358 Msa1275840:CDS 20.0%
!! GTTCAAATATAAACAAATAG+AGG + chr8_3:10075444-10075463 None:intergenic 20.0%
!! TGAAAACAAAAGAGAAAATA+AGG + chr8_3:10075729-10075748 None:intergenic 20.0%
!!! CTTTCAGTATTAATTTTGAA+TGG - chr8_3:10076087-10076106 Msa1275840:CDS 20.0%
!!! AATTTTTATTCTTACCTTGT+TGG + chr8_3:10076285-10076304 None:intergenic 20.0%
!!! TCATTCAAAATATCAAGTTT+TGG + chr8_3:10076478-10076497 None:intergenic 20.0%
!! GTATGAAATATATTATTGGT+AGG + chr8_3:10077239-10077258 None:intergenic 20.0%
!! AATCATATATAGAAAGCTAA+TGG - chr8_3:10077261-10077280 Msa1275840:CDS 20.0%
!!! GACTATTTTGTAAACATTAT+TGG - chr8_3:10077448-10077467 Msa1275840:intron 20.0%
!! TTCATGAGTTAATCATAAAT+AGG + chr8_3:10078087-10078106 None:intergenic 20.0%
!!! CATAAATTTTTATGTTCATG+TGG - chr8_3:10078443-10078462 Msa1275840:intron 20.0%
! ACAATGTATTAGTTCAAAAG+AGG + chr8_3:10074650-10074669 None:intergenic 25.0%
!!! TTATAGTAGTTGATGAGATT+AGG + chr8_3:10074676-10074695 None:intergenic 25.0%
! ATTAAAGGTAGTATAGCTAA+TGG - chr8_3:10075245-10075264 Msa1275840:CDS 25.0%
! TCCAATAAGTGTGATATATT+TGG - chr8_3:10075291-10075310 Msa1275840:CDS 25.0%
!! GGACTTTATATTTTGTCATT+TGG - chr8_3:10075330-10075349 Msa1275840:CDS 25.0%
!! TGGCAAATTTTAAATAGCTA+TGG + chr8_3:10075419-10075438 None:intergenic 25.0%
! AATATAAACAAATAGAGGGA+TGG + chr8_3:10075439-10075458 None:intergenic 25.0%
! GTGACTTTAATGTAGAATAT+TGG - chr8_3:10075768-10075787 Msa1275840:intron 25.0%
! TCTAGTCTAGTTATATGAAA+GGG + chr8_3:10075845-10075864 None:intergenic 25.0%
! CCTGTAAAAATGTCAAAAAT+TGG + chr8_3:10075984-10076003 None:intergenic 25.0%
!! CCAATTTTTGACATTTTTAC+AGG - chr8_3:10075981-10076000 Msa1275840:CDS 25.0%
! TACATCAAGAATTATATGCA+AGG - chr8_3:10076140-10076159 Msa1275840:CDS 25.0%
! TTATGATGTCTACAATGATT+TGG - chr8_3:10076625-10076644 Msa1275840:intron 25.0%
! TATGATGTCTACAATGATTT+GGG - chr8_3:10076626-10076645 Msa1275840:intron 25.0%
! AAGAAAAACTAAAACAGGTT+AGG - chr8_3:10076736-10076755 Msa1275840:CDS 25.0%
!!! AATCTTTAGAATCATAAGCT+AGG + chr8_3:10076824-10076843 None:intergenic 25.0%
!!! GCTTATGATTCTAAAGATTT+TGG - chr8_3:10076825-10076844 Msa1275840:intron 25.0%
!! TATATACCTTGAATCACTTT+TGG + chr8_3:10077198-10077217 None:intergenic 25.0%
! AATATATTATTGGTAGGACT+AGG + chr8_3:10077233-10077252 None:intergenic 25.0%
! AAATTTCTTACTATGAACAG+TGG - chr8_3:10077293-10077312 Msa1275840:CDS 25.0%
!! GTATGTACAATCTATTGTTT+TGG + chr8_3:10077743-10077762 None:intergenic 25.0%
!!! GCATTTATTTTCCTCAAATA+TGG + chr8_3:10077789-10077808 None:intergenic 25.0%
! ATTATCTTGCAAGAAAAGAA+TGG + chr8_3:10077841-10077860 None:intergenic 25.0%
!! ATTCTTTTCTTGCAAGATAA+TGG - chr8_3:10077840-10077859 Msa1275840:intron 25.0%
! ATTAATGAGATTCATACCAA+TGG + chr8_3:10078037-10078056 None:intergenic 25.0%
! TTATTGAATCAACTTTCTTG+TGG - chr8_3:10078280-10078299 Msa1275840:CDS 25.0%
! TATTGAATCAACTTTCTTGT+GGG - chr8_3:10078281-10078300 Msa1275840:CDS 25.0%
!!! TACCTTTTGATTAGATCATT+AGG + chr8_3:10078372-10078391 None:intergenic 25.0%
! AAAAGGTAACCTTATATCTT+TGG - chr8_3:10078384-10078403 Msa1275840:intron 25.0%
! CTTATACATTTCTATTAGAC+AGG - chr8_3:10078549-10078568 Msa1275840:intron 25.0%
!!! ATGAATCTTCTACTTTTTGT+TGG + chr8_3:10079047-10079066 None:intergenic 25.0%
! ATATATAATAACACGATCGT+AGG + chr8_3:10079514-10079533 None:intergenic 25.0%
! TTCCTGAAATAAAACCATTA+AGG + chr8_3:10079639-10079658 None:intergenic 25.0%
! TTTGAACCATATGAGATAAT+TGG + chr8_3:10079662-10079681 None:intergenic 25.0%
! TATCTCATATGGTTCAAATA+TGG - chr8_3:10079664-10079683 Msa1275840:five_prime_UTR 25.0%
AGCATTAAAGATGACTTCAT+TGG - chr8_3:10074765-10074784 Msa1275840:three_prime_UTR 30.0%
!! TATTTTAAACGTGGAGAAGT+AGG - chr8_3:10075078-10075097 Msa1275840:CDS 30.0%
! ATTTTAAACGTGGAGAAGTA+GGG - chr8_3:10075079-10075098 Msa1275840:CDS 30.0%
GCCAAATATATCACACTTAT+TGG + chr8_3:10075295-10075314 None:intergenic 30.0%
AGGTAAATCTTAATGAGTTG+CGG + chr8_3:10075709-10075728 None:intergenic 30.0%
GTCTAGTCTAGTTATATGAA+AGG + chr8_3:10075846-10075865 None:intergenic 30.0%
TCATATAACTAGACTAGACT+AGG - chr8_3:10075847-10075866 Msa1275840:intron 30.0%
TGACCAAGTAAAACGATAAA+TGG - chr8_3:10075876-10075895 Msa1275840:intron 30.0%
! GATCCATTTATCGTTTTACT+TGG + chr8_3:10075882-10075901 None:intergenic 30.0%
! TTTGACATTTTTACAGGAAC+TGG - chr8_3:10075987-10076006 Msa1275840:CDS 30.0%
! ATTTTTACAGGAACTGGAAA+AGG - chr8_3:10075993-10076012 Msa1275840:CDS 30.0%
!! GTTTTTAGAAATGTGTGTAG+AGG - chr8_3:10076356-10076375 Msa1275840:CDS 30.0%
TCTTGTCTATAGTACACTAA+TGG + chr8_3:10076542-10076561 None:intergenic 30.0%
! AAGAGTTGAAGACTTTAAGA+GGG - chr8_3:10076561-10076580 Msa1275840:intron 30.0%
!!! TGTTTTAGTTTTTCTTCTGC+CGG + chr8_3:10076732-10076751 None:intergenic 30.0%
CAACCAAAAAACACATGTTT+AGG + chr8_3:10076788-10076807 None:intergenic 30.0%
!! ATCTTGAAAGGTGTTAAACT+CGG + chr8_3:10077052-10077071 None:intergenic 30.0%
ACACATCATCAAAAAACTCT+CGG - chr8_3:10077377-10077396 Msa1275840:CDS 30.0%
!!! TTGGTTGCTACTTTTAATTC+AGG - chr8_3:10077467-10077486 Msa1275840:intron 30.0%
AAGCTAGATAGCCAAAAATT+TGG - chr8_3:10077507-10077526 Msa1275840:intron 30.0%
!!! TGGTGTTATCACCAAATTTT+TGG + chr8_3:10077521-10077540 None:intergenic 30.0%
CACCATAACTAAAGAAAACT+TGG - chr8_3:10077542-10077561 Msa1275840:intron 30.0%
! CTCCAAGTTTTCTTTAGTTA+TGG + chr8_3:10077547-10077566 None:intergenic 30.0%
!!! CTGTTTTTTTCTTTCCAAAG+TGG - chr8_3:10077619-10077638 Msa1275840:CDS 30.0%
AATAAATGCAAGTGAGACAA+AGG - chr8_3:10077800-10077819 Msa1275840:intron 30.0%
ATTTACAACAACAAAAGCCT+TGG + chr8_3:10077988-10078007 None:intergenic 30.0%
GAAGCAAGAGTTTATGAATA+GGG + chr8_3:10078194-10078213 None:intergenic 30.0%
ATTGAATCAACTTTCTTGTG+GGG - chr8_3:10078282-10078301 Msa1275840:CDS 30.0%
TGCCTAATGATCTAATCAAA+AGG - chr8_3:10078367-10078386 Msa1275840:intron 30.0%
AATGACTGACCAAAGATATA+AGG + chr8_3:10078396-10078415 None:intergenic 30.0%
! TTTTTATGTTCATGTGGTGT+CGG - chr8_3:10078449-10078468 Msa1275840:intron 30.0%
!!! CCATTTTACAACTGTTTTTG+AGG + chr8_3:10078584-10078603 None:intergenic 30.0%
CCTCAAAAACAGTTGTAAAA+TGG - chr8_3:10078581-10078600 Msa1275840:intron 30.0%
!! TTCTGATGGACTAGAAATAT+GGG - chr8_3:10078755-10078774 Msa1275840:intron 30.0%
TTAAGGATATATCCTCCATA+CGG + chr8_3:10079020-10079039 None:intergenic 30.0%
!!! ATCTTCTACTTTTTGTTGGT+CGG + chr8_3:10079043-10079062 None:intergenic 30.0%
!! TCAGTAAGAGTATCATTCTT+TGG + chr8_3:10079143-10079162 None:intergenic 30.0%
ATAGAATTGAAGGTGACAAT+TGG - chr8_3:10079219-10079238 Msa1275840:intron 30.0%
! TTTTAGATGGAGATACTGTT+GGG + chr8_3:10079425-10079444 None:intergenic 30.0%
! ATTTTAGATGGAGATACTGT+TGG + chr8_3:10079426-10079445 None:intergenic 30.0%
AACAGTATCTCCATCTAAAA+TGG - chr8_3:10079425-10079444 Msa1275840:CDS 30.0%
AACAGGACTATAATGTTACA+AGG + chr8_3:10079603-10079622 None:intergenic 30.0%
!!! AGCCTTAATGGTTTTATTTC+AGG - chr8_3:10079634-10079653 Msa1275840:five_prime_UTR 30.0%
TAAATACGAACCATTCCCTA+TGG - chr8_3:10074693-10074712 Msa1275840:three_prime_UTR 35.0%
AAGATGACTTCATTGGTGAA+AGG - chr8_3:10074772-10074791 Msa1275840:three_prime_UTR 35.0%
TCTCTTTGATAAGCACGAAA+AGG - chr8_3:10074795-10074814 Msa1275840:three_prime_UTR 35.0%
TCAACTTGAGAGCTATAGAA+CGG + chr8_3:10074972-10074991 None:intergenic 35.0%
!! GAGCTCACATATTTTAAACG+TGG - chr8_3:10075069-10075088 Msa1275840:CDS 35.0%
TCTCTGTGAACTAACTCAAT+TGG + chr8_3:10075159-10075178 None:intergenic 35.0%
AAGTGTGATATATTTGGCGT+TGG - chr8_3:10075297-10075316 Msa1275840:CDS 35.0%
TTGGTATAAATGGAACTACG+TGG - chr8_3:10075349-10075368 Msa1275840:CDS 35.0%
TGGTATAAATGGAACTACGT+GGG - chr8_3:10075350-10075369 Msa1275840:CDS 35.0%
GGTAAAGAGATCATAGAAGT+AGG + chr8_3:10075535-10075554 None:intergenic 35.0%
GGTAAAAGAGTCTAAGTAGT+CGG + chr8_3:10075556-10075575 None:intergenic 35.0%
GGTGTCAAAAACTCTTAATG+TGG + chr8_3:10075688-10075707 None:intergenic 35.0%
!! TTTTGTTTGTCTCCCAATGT+TGG + chr8_3:10076065-10076084 None:intergenic 35.0%
TTCTTGATGTAAAAAGCTCC+AGG + chr8_3:10076131-10076150 None:intergenic 35.0%
CTTGAAGATATTCCAAACCA+TGG - chr8_3:10076188-10076207 Msa1275840:intron 35.0%
ACATCAGAGTTGAAGAGATT+AGG + chr8_3:10076399-10076418 None:intergenic 35.0%
GAAGAGTTGAAGACTTTAAG+AGG - chr8_3:10076560-10076579 Msa1275840:CDS 35.0%
! AGAGTTGAAGACTTTAAGAG+GGG - chr8_3:10076562-10076581 Msa1275840:intron 35.0%
!! AATTGGCTCGTCAAATTCTT+GGG - chr8_3:10076669-10076688 Msa1275840:intron 35.0%
GGCAGAAGAAAAACTAAAAC+AGG - chr8_3:10076731-10076750 Msa1275840:CDS 35.0%
CAAAATATGGCACAAGTGTT+TGG + chr8_3:10076764-10076783 None:intergenic 35.0%
! CAAACACTTGTGCCATATTT+TGG - chr8_3:10076762-10076781 Msa1275840:CDS 35.0%
CACATGTTTAGGCCAAAATA+TGG + chr8_3:10076777-10076796 None:intergenic 35.0%
!!! TGGCCTAAACATGTGTTTTT+TGG - chr8_3:10076782-10076801 Msa1275840:CDS 35.0%
TCATAAGCTAGGTAAACATC+TGG + chr8_3:10076813-10076832 None:intergenic 35.0%
CAAATGATTCATCTCTTGGA+AGG + chr8_3:10076927-10076946 None:intergenic 35.0%
CTTCCAAGAGATGAATCATT+TGG - chr8_3:10076925-10076944 Msa1275840:CDS 35.0%
TGTCCAAATGATTCATCTCT+TGG + chr8_3:10076931-10076950 None:intergenic 35.0%
GTAACTACAGATCTCAATTG+AGG + chr8_3:10077012-10077031 None:intergenic 35.0%
!! TCTTGAAAGGTGTTAAACTC+GGG + chr8_3:10077051-10077070 None:intergenic 35.0%
! ACAATGGTATTGGACTAATC+TGG + chr8_3:10077125-10077144 None:intergenic 35.0%
TAGTCCAATACCATTGTTCA+AGG - chr8_3:10077128-10077147 Msa1275840:CDS 35.0%
AGTTCCTTGAACAATGGTAT+TGG + chr8_3:10077135-10077154 None:intergenic 35.0%
!! ATACCTTGAATCACTTTTGG+TGG + chr8_3:10077195-10077214 None:intergenic 35.0%
!!! GAGAGTTTTTTGATGATGTG+TGG + chr8_3:10077378-10077397 None:intergenic 35.0%
! GTTTTCTTTAGTTATGGTGC+TGG + chr8_3:10077541-10077560 None:intergenic 35.0%
! AAAATTCACGAATGCCACTT+TGG + chr8_3:10077636-10077655 None:intergenic 35.0%
! TGGCATTCGTGAATTTTGTT+CGG - chr8_3:10077639-10077658 Msa1275840:CDS 35.0%
! ATAAGATCGACTTTAACCAC+TGG - chr8_3:10077692-10077711 Msa1275840:CDS 35.0%
! TAAGATCGACTTTAACCACT+GGG - chr8_3:10077693-10077712 Msa1275840:CDS 35.0%
TTCCTCAAATATGGAAAGAG+CGG + chr8_3:10077780-10077799 None:intergenic 35.0%
!! AAGAATGGTTCTAGTAGCAT+AGG + chr8_3:10077826-10077845 None:intergenic 35.0%
TGAATATCAACATGTGTGAC+AGG - chr8_3:10078103-10078122 Msa1275840:CDS 35.0%
! CTATTTGTTGCTATGACGAA+TGG + chr8_3:10078153-10078172 None:intergenic 35.0%
CATTCGTCATAGCAACAAAT+AGG - chr8_3:10078151-10078170 Msa1275840:CDS 35.0%
AACAAATAGGCATCTTAGTG+TGG - chr8_3:10078164-10078183 Msa1275840:CDS 35.0%
GGAAGCAAGAGTTTATGAAT+AGG + chr8_3:10078195-10078214 None:intergenic 35.0%
TTCATTGTGTCACGATAATG+TGG + chr8_3:10078216-10078235 None:intergenic 35.0%
! AATGTCTGCTGTTGTTTACA+AGG - chr8_3:10078320-10078339 Msa1275840:intron 35.0%
GATTGGAATTTCATTGAGCA+AGG - chr8_3:10078342-10078361 Msa1275840:intron 35.0%
!! CTTCCTTGCTTGTTATTTAG+AGG - chr8_3:10078666-10078685 Msa1275840:intron 35.0%
ACTCCTCTAAATAACAAGCA+AGG + chr8_3:10078672-10078691 None:intergenic 35.0%
AAGGATAATCCTCTATCAGA+AGG + chr8_3:10078731-10078750 None:intergenic 35.0%
GATTATCCTTATGCTTCTGA+TGG - chr8_3:10078741-10078760 Msa1275840:intron 35.0%
!! CTTCTGATGGACTAGAAATA+TGG - chr8_3:10078754-10078773 Msa1275840:intron 35.0%
! ATTCTGGAAAGAACTTGTAG+AGG - chr8_3:10078863-10078882 Msa1275840:intron 35.0%
TGAAGCAATCCATATAAGGA+TGG + chr8_3:10078964-10078983 None:intergenic 35.0%
AACTTTGGACAATATCCGTA+TGG - chr8_3:10079002-10079021 Msa1275840:intron 35.0%
!! TACTTTTTGTTGGTCGGTTA+AGG + chr8_3:10079037-10079056 None:intergenic 35.0%
!! TACTGACTTGACCATTATAG+AGG - chr8_3:10079157-10079176 Msa1275840:intron 35.0%
TACCTTGGAGATAGAATTGA+AGG - chr8_3:10079209-10079228 Msa1275840:intron 35.0%
TTGAGCAAAAACTCACTCAA+AGG - chr8_3:10079300-10079319 Msa1275840:intron 35.0%
ATGATGAGACATTGAGGAAT+CGG - chr8_3:10079327-10079346 Msa1275840:CDS 35.0%
! ATCTCCATCTAAAATGGTCA+TGG - chr8_3:10079431-10079450 Msa1275840:CDS 35.0%
! ACAACCATGACCATTTTAGA+TGG + chr8_3:10079438-10079457 None:intergenic 35.0%
! TGCTTTGAATAACAGTGAGA+AGG - chr8_3:10079466-10079485 Msa1275840:CDS 35.0%
TGTATCAAATGCAGCCTTAA+TGG - chr8_3:10079622-10079641 Msa1275840:five_prime_UTR 35.0%
CAGGAACCAATTATCTCATA+TGG - chr8_3:10079653-10079672 Msa1275840:five_prime_UTR 35.0%
TGTCTTGTAACCATAGGGAA+TGG + chr8_3:10074706-10074725 None:intergenic 40.0%
GCTTGTGTCTTGTAACCATA+GGG + chr8_3:10074711-10074730 None:intergenic 40.0%
TGCTTGTGTCTTGTAACCAT+AGG + chr8_3:10074712-10074731 None:intergenic 40.0%
TGATAAGCACGAAAAGGTGA+AGG - chr8_3:10074801-10074820 Msa1275840:three_prime_UTR 40.0%
GATAAGCACGAAAAGGTGAA+GGG - chr8_3:10074802-10074821 Msa1275840:three_prime_UTR 40.0%
AACATCACCAATAGCACCTA+TGG + chr8_3:10074911-10074930 None:intergenic 40.0%
!! ATTAGTGCTACAAGTGCTGA+TGG - chr8_3:10074991-10075010 Msa1275840:CDS 40.0%
!!! TTTGGCGTTGGTAACTGTTT+TGG - chr8_3:10075309-10075328 Msa1275840:CDS 40.0%
GGTATAAATGGAACTACGTG+GGG - chr8_3:10075351-10075370 Msa1275840:CDS 40.0%
GTATAAATGGAACTACGTGG+GGG - chr8_3:10075352-10075371 Msa1275840:CDS 40.0%
! ACTCTTTTACCAACACTGTG+TGG - chr8_3:10075565-10075584 Msa1275840:CDS 40.0%
AAGTGGTAGACATTTGTACG+TGG - chr8_3:10075591-10075610 Msa1275840:CDS 40.0%
TTGTACGTGGAGGATATCTT+TGG - chr8_3:10075604-10075623 Msa1275840:CDS 40.0%
GGAACTGGAAAAGGAAAAGT+TGG - chr8_3:10076002-10076021 Msa1275840:CDS 40.0%
TGGAAAAGGAAAAGTTGGAC+AGG - chr8_3:10076007-10076026 Msa1275840:CDS 40.0%
GGACAGGAAACATTTCTGAA+AGG - chr8_3:10076023-10076042 Msa1275840:CDS 40.0%
TCTTACCTCCATACCAACAT+TGG - chr8_3:10076049-10076068 Msa1275840:CDS 40.0%
CTTACCTCCATACCAACATT+GGG - chr8_3:10076050-10076069 Msa1275840:CDS 40.0%
TTTGTCTCCCAATGTTGGTA+TGG + chr8_3:10076060-10076079 None:intergenic 40.0%
! TTTTGAATGGGACAGTGACA+TGG - chr8_3:10076100-10076119 Msa1275840:CDS 40.0%
TTTGAATGGGACAGTGACAT+GGG - chr8_3:10076101-10076120 Msa1275840:CDS 40.0%
CTTCAAGTGTCAAACTCACA+AGG + chr8_3:10076175-10076194 None:intergenic 40.0%
AAACAAAGTGGATGGATCCA+TGG + chr8_3:10076208-10076227 None:intergenic 40.0%
TGAGTTGCAAACAAAGTGGA+TGG + chr8_3:10076216-10076235 None:intergenic 40.0%
! TCCACTTTGTTTGCAACTCA+TGG - chr8_3:10076216-10076235 Msa1275840:intron 40.0%
TCCATGAGTTGCAAACAAAG+TGG + chr8_3:10076220-10076239 None:intergenic 40.0%
ATACCTTCCAAGTGAAACAC+CGG - chr8_3:10076514-10076533 Msa1275840:CDS 40.0%
CTATAGTACACTAATGGAGC+CGG + chr8_3:10076536-10076555 None:intergenic 40.0%
! TTGAAGACTTTAAGAGGGGA+TGG - chr8_3:10076566-10076585 Msa1275840:intron 40.0%
AGAATTTGACGAGCCAATTG+AGG + chr8_3:10076668-10076687 None:intergenic 40.0%
!! CAATTGGCTCGTCAAATTCT+TGG - chr8_3:10076668-10076687 Msa1275840:intron 40.0%
!! ATTGGCTCGTCAAATTCTTG+GGG - chr8_3:10076670-10076689 Msa1275840:intron 40.0%
TCTCTTGGAAGGTAAACAGT+GGG + chr8_3:10076916-10076935 None:intergenic 40.0%
ATCTCTTGGAAGGTAAACAG+TGG + chr8_3:10076917-10076936 None:intergenic 40.0%
!! CTTGAAAGGTGTTAAACTCG+GGG + chr8_3:10077050-10077069 None:intergenic 40.0%
! ATCTGGCTTAGTACATCAGT+AGG + chr8_3:10077108-10077127 None:intergenic 40.0%
CGGAAAAGTTCCTTGAACAA+TGG + chr8_3:10077141-10077160 None:intergenic 40.0%
! AAGGAACTTTTCCGATCTGA+TGG - chr8_3:10077147-10077166 Msa1275840:CDS 40.0%
AGACTGATGAGGAATTTGCA+AGG - chr8_3:10077331-10077350 Msa1275840:CDS 40.0%
GACTGATGAGGAATTTGCAA+GGG - chr8_3:10077332-10077351 Msa1275840:CDS 40.0%
AGAAAACTTGGAGCCAAACA+TGG - chr8_3:10077554-10077573 Msa1275840:intron 40.0%
GAAAACTTGGAGCCAAACAT+GGG - chr8_3:10077555-10077574 Msa1275840:intron 40.0%
! GGCATTCGTGAATTTTGTTC+GGG - chr8_3:10077640-10077659 Msa1275840:CDS 40.0%
! AATTTGAAATCTGTCCCTCG+AGG - chr8_3:10077667-10077686 Msa1275840:CDS 40.0%
AGTCGATCTTATAACCTCGA+GGG + chr8_3:10077684-10077703 None:intergenic 40.0%
AAGTCGATCTTATAACCTCG+AGG + chr8_3:10077685-10077704 None:intergenic 40.0%
TCCTCAAATATGGAAAGAGC+GGG + chr8_3:10077779-10077798 None:intergenic 40.0%
!! TAATGGAACTTTGAAGCCAC+TGG - chr8_3:10077857-10077876 Msa1275840:intron 40.0%
GACCAAAACTATCACCTTGA+GGG + chr8_3:10077905-10077924 None:intergenic 40.0%
GGCAAGTAAACATTGCTAAC+AGG + chr8_3:10077927-10077946 None:intergenic 40.0%
!! AAGGTGTTGAAGCATCAGTT+TGG - chr8_3:10077955-10077974 Msa1275840:intron 40.0%
AAATGTCTTGGTCAATGCAG+AGG - chr8_3:10078254-10078273 Msa1275840:CDS 40.0%
AATGTCTTGGTCAATGCAGA+GGG - chr8_3:10078255-10078274 Msa1275840:CDS 40.0%
CTTGTGGGGAAATTATGCTT+TGG - chr8_3:10078296-10078315 Msa1275840:intron 40.0%
! CTGCTGTTGTTTACAAGGAT+TGG - chr8_3:10078325-10078344 Msa1275840:intron 40.0%
ATTTAGAGGAGTAGCTGTTG+AGG - chr8_3:10078680-10078699 Msa1275840:intron 40.0%
GATAATCCTCTATCAGAAGG+CGG + chr8_3:10078728-10078747 None:intergenic 40.0%
! TCTAGTCCATCAGAAGCATA+AGG + chr8_3:10078750-10078769 None:intergenic 40.0%
TTCACCAACCCATGACTTAA+TGG + chr8_3:10078784-10078803 None:intergenic 40.0%
ATTCTGAACTCCAAGCATTC+TGG - chr8_3:10078847-10078866 Msa1275840:intron 40.0%
CAAGTTCTTTCCAGAATGCT+TGG + chr8_3:10078860-10078879 None:intergenic 40.0%
TGGAAAGAACTTGTAGAGGT+TGG - chr8_3:10078867-10078886 Msa1275840:intron 40.0%
GTGACTTAAAGAATGCCACA+TGG - chr8_3:10078895-10078914 Msa1275840:intron 40.0%
ACTTAAAGAATGCCACATGG+TGG - chr8_3:10078898-10078917 Msa1275840:intron 40.0%
TTGCATCTTAAACCACCATG+TGG + chr8_3:10078913-10078932 None:intergenic 40.0%
! GTTTAAGATGCAAACTCGTG+AGG - chr8_3:10078920-10078939 Msa1275840:intron 40.0%
AAGCTTCCACCATCCTTATA+TGG - chr8_3:10078952-10078971 Msa1275840:intron 40.0%
AGCAATCCATATAAGGATGG+TGG + chr8_3:10078961-10078980 None:intergenic 40.0%
GTGCTGAAGCAATCCATATA+AGG + chr8_3:10078968-10078987 None:intergenic 40.0%
CTTCATGCAGCTGTTAACTT+TGG - chr8_3:10078987-10079006 Msa1275840:intron 40.0%
TTTGGACAATATCCGTATGG+AGG - chr8_3:10079005-10079024 Msa1275840:intron 40.0%
AGAAGATTCATGCCTGAGAA+AGG - chr8_3:10079056-10079075 Msa1275840:intron 40.0%
TTAGCAAGCTCATCATACTC+AGG + chr8_3:10079086-10079105 None:intergenic 40.0%
!! TGAGTATGATGAGCTTGCTA+AGG - chr8_3:10079085-10079104 Msa1275840:intron 40.0%
CCTTGACAAGACCTCTATAA+TGG + chr8_3:10079171-10079190 None:intergenic 40.0%
! CCATTATAGAGGTCTTGTCA+AGG - chr8_3:10079168-10079187 Msa1275840:intron 40.0%
CACCTTCAATTCTATCTCCA+AGG + chr8_3:10079214-10079233 None:intergenic 40.0%
! AACCTCTTGAAGGCTTCTTT+TGG + chr8_3:10079260-10079279 None:intergenic 40.0%
AAAGAAGCCTTCAAGAGGTT+TGG - chr8_3:10079260-10079279 Msa1275840:intron 40.0%
CTTCTTTCCAAACCTCTTGA+AGG + chr8_3:10079270-10079289 None:intergenic 40.0%
CAAGAGGTTTGGAAAGAAGT+TGG - chr8_3:10079271-10079290 Msa1275840:intron 40.0%
GGAACAATGATGAGACATTG+AGG - chr8_3:10079321-10079340 Msa1275840:CDS 40.0%
AAGGCTGCATTTGATACAAC+AGG + chr8_3:10079620-10079639 None:intergenic 40.0%
CAAAGCCCTACTGGTATCAT+TGG - chr8_3:10074880-10074899 Msa1275840:CDS 45.0%
CACCACCAATGATACCAGTA+GGG + chr8_3:10074888-10074907 None:intergenic 45.0%
AGCTATAGAACGGCCTAAGA+AGG + chr8_3:10074962-10074981 None:intergenic 45.0%
TGGTAGACATTTGTACGTGG+AGG - chr8_3:10075594-10075613 Msa1275840:CDS 45.0%
AAGTGGATGGATCCATGGTT+TGG + chr8_3:10076203-10076222 None:intergenic 45.0%
CCTTGTTGGCAAAGAAGATG+CGG + chr8_3:10076271-10076290 None:intergenic 45.0%
! ACTTTAAGAGGGGATGGAAC+AGG - chr8_3:10076572-10076591 Msa1275840:intron 45.0%
! TTGGCTCGTCAAATTCTTGG+GGG - chr8_3:10076671-10076690 Msa1275840:intron 45.0%
GTGCTTGTTCACCATCAGAT+CGG + chr8_3:10077161-10077180 None:intergenic 45.0%
!! CCTTGAATCACTTTTGGTGG+TGG + chr8_3:10077192-10077211 None:intergenic 45.0%
CCACCACCAAAAGTGATTCA+AGG - chr8_3:10077189-10077208 Msa1275840:CDS 45.0%
TTTGCAAGGGAGATGATTGC+TGG - chr8_3:10077345-10077364 Msa1275840:CDS 45.0%
TTGCAAGGGAGATGATTGCT+GGG - chr8_3:10077346-10077365 Msa1275840:CDS 45.0%
!! CTATCTAGCTTGCTCTTTGG+TGG + chr8_3:10077498-10077517 None:intergenic 45.0%
!! TGGCTATCTAGCTTGCTCTT+TGG + chr8_3:10077501-10077520 None:intergenic 45.0%
ATGACAAAAGTCGAACCCAG+TGG + chr8_3:10077711-10077730 None:intergenic 45.0%
! GGGTTCGACTTTTGTCATAC+AGG - chr8_3:10077713-10077732 Msa1275840:CDS 45.0%
ACCCGCTCTTTCCATATTTG+AGG - chr8_3:10077775-10077794 Msa1275840:CDS 45.0%
AAACTATCACCTTGAGGGTG+TGG + chr8_3:10077900-10077919 None:intergenic 45.0%
! CACCCTCAAGGTGATAGTTT+TGG - chr8_3:10077900-10077919 Msa1275840:intron 45.0%
GGACCAAAACTATCACCTTG+AGG + chr8_3:10077906-10077925 None:intergenic 45.0%
TGCTTCAACACCTTCACTTG+CGG + chr8_3:10077949-10077968 None:intergenic 45.0%
CAACAACAAAAGCCTTGGCA+AGG + chr8_3:10077983-10078002 None:intergenic 45.0%
ATCACCAACTTGTCAGCCAT+TGG - chr8_3:10078018-10078037 Msa1275840:intron 45.0%
CATACCAATGGCTGACAAGT+TGG + chr8_3:10078025-10078044 None:intergenic 45.0%
GAATGGCTCAACAACAGCAT+GGG + chr8_3:10078136-10078155 None:intergenic 45.0%
TGCACTTGCACGAAATGTCT+TGG - chr8_3:10078242-10078261 Msa1275840:CDS 45.0%
! TTATGTTCATGTGGTGTCGG+TGG - chr8_3:10078452-10078471 Msa1275840:intron 45.0%
! TATGGGCTGCCATTAAGTCA+TGG - chr8_3:10078772-10078791 Msa1275840:intron 45.0%
! ATGGGCTGCCATTAAGTCAT+GGG - chr8_3:10078773-10078792 Msa1275840:intron 45.0%
! GAACTTGTAGAGGTTGGTCA+TGG - chr8_3:10078873-10078892 Msa1275840:intron 45.0%
TACTCAGGTGATCCTTTCTC+AGG + chr8_3:10079071-10079090 None:intergenic 45.0%
GCTTCTGATGAGCAATACCT+TGG - chr8_3:10079194-10079213 Msa1275840:intron 45.0%
AGCCAAAAGAAGCCTTCAAG+AGG - chr8_3:10079255-10079274 Msa1275840:intron 45.0%
GAGACATTGAGGAATCGGTA+TGG - chr8_3:10079332-10079351 Msa1275840:CDS 45.0%
AGAGTGTATGGCATCTTCAC+AGG + chr8_3:10079359-10079378 None:intergenic 45.0%
GAAGGGTAAAGCAGAGTGTA+TGG + chr8_3:10079371-10079390 None:intergenic 45.0%
TCAATCCTTCCTCGCTAGAA+GGG + chr8_3:10079388-10079407 None:intergenic 45.0%
CGATCGTAGGTAAGAAGTGA+GGG + chr8_3:10079501-10079520 None:intergenic 45.0%
ACGATCGTAGGTAAGAAGTG+AGG + chr8_3:10079502-10079521 None:intergenic 45.0%
!!! ATTTTTTTTAATTAAACTAA+TGG - chr8_3:10075043-10075062 Msa1275840:CDS 5.0%
CGAAAAGGTGAAGGGAACTG+TGG - chr8_3:10074810-10074829 Msa1275840:three_prime_UTR 50.0%
AGCCCTACTGGTATCATTGG+TGG - chr8_3:10074883-10074902 Msa1275840:CDS 50.0%
GCACCACCAATGATACCAGT+AGG + chr8_3:10074889-10074908 None:intergenic 50.0%
!! GGTATCATTGGTGGTGCCAT+AGG - chr8_3:10074892-10074911 Msa1275840:CDS 50.0%
!! GGTGCTATTGGTGATGTTGC+TGG - chr8_3:10074913-10074932 Msa1275840:CDS 50.0%
! GACACTGCCACTTCCTTCTT+AGG - chr8_3:10074946-10074965 Msa1275840:CDS 50.0%
AGAACGGCCTAAGAAGGAAG+TGG + chr8_3:10074956-10074975 None:intergenic 50.0%
AGGGGTTGAGTATCAAACCC+TGG + chr8_3:10075108-10075127 None:intergenic 50.0%
CCACTTATGCCACACAGTGT+TGG + chr8_3:10075577-10075596 None:intergenic 50.0%
CCAACACTGTGTGGCATAAG+TGG - chr8_3:10075574-10075593 Msa1275840:CDS 50.0%
GTCTCCCAATGTTGGTATGG+AGG + chr8_3:10076057-10076076 None:intergenic 50.0%
GACAGTGACATGGGAATTCC+TGG - chr8_3:10076110-10076129 Msa1275840:CDS 50.0%
GTTGGCAAAGAAGATGCGGT+CGG + chr8_3:10076267-10076286 None:intergenic 50.0%
CCGCATCTTCTTTGCCAACA+AGG - chr8_3:10076268-10076287 Msa1275840:intron 50.0%
AATGGAGCCGGTGTTTCACT+TGG + chr8_3:10076524-10076543 None:intergenic 50.0%
! AACAGGAGAGCGCAAGGAAT+GGG - chr8_3:10076589-10076608 Msa1275840:intron 50.0%
! GCCTGACTCGAAACCTCAAT+TGG - chr8_3:10076652-10076671 Msa1275840:intron 50.0%
! GCCAATTGAGGTTTCGAGTC+AGG + chr8_3:10076656-10076675 None:intergenic 50.0%
CGATTTCCCTTACCCTCGAA+GGG - chr8_3:10076700-10076719 Msa1275840:intron 50.0%
GATTTCCCTTACCCTCGAAG+GGG - chr8_3:10076701-10076720 Msa1275840:intron 50.0%
TTCTTCCCCTTCGAGGGTAA+GGG + chr8_3:10076709-10076728 None:intergenic 50.0%
GGACTTCGAGTCTCACTGTT+AGG + chr8_3:10076895-10076914 None:intergenic 50.0%
! GAGAGAGCGCACATCTTGAA+AGG + chr8_3:10077064-10077083 None:intergenic 50.0%
GAACAGTGGACCATTCTGCA+TGG - chr8_3:10077307-10077326 Msa1275840:CDS 50.0%
CATCAGTCTGCCATGCAGAA+TGG + chr8_3:10077320-10077339 None:intergenic 50.0%
TTCTGCATGGCAGACTGATG+AGG - chr8_3:10077320-10077339 Msa1275840:CDS 50.0%
TGCAAGGGAGATGATTGCTG+GGG - chr8_3:10077347-10077366 Msa1275840:CDS 50.0%
AACTTGGAGCCAAACATGGG+TGG - chr8_3:10077558-10077577 Msa1275840:intron 50.0%
ACTTGGAGCCAAACATGGGT+GGG - chr8_3:10077559-10077578 Msa1275840:intron 50.0%
AATATGGAAAGAGCGGGTCG+TGG + chr8_3:10077773-10077792 None:intergenic 50.0%
CTGCTTAGTTCAATGGCCAG+TGG + chr8_3:10077876-10077895 None:intergenic 50.0%
CACTGGCCATTGAACTAAGC+AGG - chr8_3:10077874-10077893 Msa1275840:intron 50.0%
GTGTGGCCTGCTTAGTTCAA+TGG + chr8_3:10077883-10077902 None:intergenic 50.0%
GTTTACTTGCCCGCAAGTGA+AGG - chr8_3:10077936-10077955 Msa1275840:intron 50.0%
GCTTCAACACCTTCACTTGC+GGG + chr8_3:10077948-10077967 None:intergenic 50.0%
! ATCAGTTTGGCTCCTTGCCA+AGG - chr8_3:10077968-10077987 Msa1275840:intron 50.0%
!! GCTGACAAGTTGGTGATAGC+AGG + chr8_3:10078015-10078034 None:intergenic 50.0%
CGAATGGCTCAACAACAGCA+TGG + chr8_3:10078137-10078156 None:intergenic 50.0%
GCTGCCATTAAGTCATGGGT+TGG - chr8_3:10078777-10078796 Msa1275840:intron 50.0%
TCTGCTTTACCCTTCTAGCG+AGG - chr8_3:10079376-10079395 Msa1275840:CDS 50.0%
CTTTACCCTTCTAGCGAGGA+AGG - chr8_3:10079380-10079399 Msa1275840:CDS 50.0%
GTCAATCCTTCCTCGCTAGA+AGG + chr8_3:10079389-10079408 None:intergenic 50.0%
!! GAGGAAGGATTGACTTGCAG+AGG - chr8_3:10079395-10079414 Msa1275840:CDS 50.0%
ACTGCAGCTCAAAGCCCTAC+TGG - chr8_3:10074871-10074890 Msa1275840:exon 55.0%
!! GGTGGTGCCATAGGTGCTAT+TGG - chr8_3:10074901-10074920 Msa1275840:CDS 55.0%
GTGGAGAAGTAGGGTCTCCA+GGG - chr8_3:10075088-10075107 Msa1275840:CDS 55.0%
GAGCCGGTGTTTCACTTGGA+AGG + chr8_3:10076520-10076539 None:intergenic 55.0%
! GAACAGGAGAGCGCAAGGAA+TGG - chr8_3:10076588-10076607 Msa1275840:intron 55.0%
GCGATTTCCCTTACCCTCGA+AGG - chr8_3:10076699-10076718 Msa1275840:intron 55.0%
GTTCTTCCCCTTCGAGGGTA+AGG + chr8_3:10076710-10076729 None:intergenic 55.0%
TACCCTCGAAGGGGAAGAAC+CGG - chr8_3:10076710-10076729 Msa1275840:intron 55.0%
AGATGTGCGCTCTCTCTACG+AGG - chr8_3:10077068-10077087 Msa1275840:intron 55.0%
GATGTGCGCTCTCTCTACGA+GGG - chr8_3:10077069-10077088 Msa1275840:intron 55.0%
CTTGGAGCCAAACATGGGTG+GGG - chr8_3:10077560-10077579 Msa1275840:intron 55.0%
ACAGTGACCCCACCCATGTT+TGG + chr8_3:10077570-10077589 None:intergenic 55.0%
ATCAGAAGGCGGAGACCAGT+AGG + chr8_3:10078717-10078736 None:intergenic 55.0%
TGGTCTCCGCCTTCTGATAG+AGG - chr8_3:10078719-10078738 Msa1275840:intron 55.0%
CGTGGAGAAGTAGGGTCTCC+AGG - chr8_3:10075087-10075106 Msa1275840:CDS 60.0%
! GGATGGAACAGGAGAGCGCA+AGG - chr8_3:10076583-10076602 Msa1275840:intron 60.0%
!! TGCCGGTTCTTCCCCTTCGA+GGG + chr8_3:10076715-10076734 None:intergenic 60.0%
GGGTGGGGTCACTGTAGAAC+AGG - chr8_3:10077575-10077594 Msa1275840:CDS 60.0%
CTAAGCAGGCCACACCCTCA+AGG - chr8_3:10077888-10077907 Msa1275840:intron 60.0%
GAGGATCCAGCCTCTCCTAC+TGG - chr8_3:10078699-10078718 Msa1275840:intron 60.0%
AAGGCGGAGACCAGTAGGAG+AGG + chr8_3:10078712-10078731 None:intergenic 60.0%
!! CTGCCGGTTCTTCCCCTTCG+AGG + chr8_3:10076716-10076735 None:intergenic 65.0%
GTGCGCTCTCTCTACGAGGG+TGG - chr8_3:10077072-10077091 Msa1275840:intron 65.0%
CGGAGACCAGTAGGAGAGGC+TGG + chr8_3:10078708-10078727 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 10074622 10079692 10074622 ID=Msa1275840;Name=Msa1275840
chr8_3 mRNA 10074622 10079692 10074622 ID=Msa1275840-mRNA-1;Parent=Msa1275840;Name=Msa1275840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=153|1|1|1|0.88|0.8|10|229|868
chr8_3 exon 10074622 10074642 10074622 ID=Msa1275840-mRNA-1:exon:4177;Parent=Msa1275840-mRNA-1
chr8_3 exon 10074664 10075628 10074664 ID=Msa1275840-mRNA-1:exon:4176;Parent=Msa1275840-mRNA-1
chr8_3 exon 10075926 10076189 10075926 ID=Msa1275840-mRNA-1:exon:4175;Parent=Msa1275840-mRNA-1
chr8_3 exon 10076275 10076579 10076275 ID=Msa1275840-mRNA-1:exon:4174;Parent=Msa1275840-mRNA-1
chr8_3 exon 10076718 10076825 10076718 ID=Msa1275840-mRNA-1:exon:4173;Parent=Msa1275840-mRNA-1
chr8_3 exon 10076916 10077001 10076916 ID=Msa1275840-mRNA-1:exon:4172;Parent=Msa1275840-mRNA-1
chr8_3 exon 10077104 10077424 10077104 ID=Msa1275840-mRNA-1:exon:4171;Parent=Msa1275840-mRNA-1
chr8_3 exon 10077562 10077802 10077562 ID=Msa1275840-mRNA-1:exon:4170;Parent=Msa1275840-mRNA-1
chr8_3 exon 10078025 10078311 10078025 ID=Msa1275840-mRNA-1:exon:4169;Parent=Msa1275840-mRNA-1
chr8_3 exon 10079302 10079692 10079302 ID=Msa1275840-mRNA-1:exon:4168;Parent=Msa1275840-mRNA-1
chr8_3 five_prime_UTR 10079540 10079692 10079540 ID=Msa1275840-mRNA-1:five_prime_utr;Parent=Msa1275840-mRNA-1
chr8_3 CDS 10079302 10079539 10079302 ID=Msa1275840-mRNA-1:cds;Parent=Msa1275840-mRNA-1
chr8_3 CDS 10078025 10078311 10078025 ID=Msa1275840-mRNA-1:cds;Parent=Msa1275840-mRNA-1
chr8_3 CDS 10077562 10077802 10077562 ID=Msa1275840-mRNA-1:cds;Parent=Msa1275840-mRNA-1
chr8_3 CDS 10077104 10077424 10077104 ID=Msa1275840-mRNA-1:cds;Parent=Msa1275840-mRNA-1
chr8_3 CDS 10076916 10077001 10076916 ID=Msa1275840-mRNA-1:cds;Parent=Msa1275840-mRNA-1
chr8_3 CDS 10076718 10076825 10076718 ID=Msa1275840-mRNA-1:cds;Parent=Msa1275840-mRNA-1
chr8_3 CDS 10076275 10076579 10076275 ID=Msa1275840-mRNA-1:cds;Parent=Msa1275840-mRNA-1
chr8_3 CDS 10075926 10076189 10075926 ID=Msa1275840-mRNA-1:cds;Parent=Msa1275840-mRNA-1
chr8_3 CDS 10074872 10075628 10074872 ID=Msa1275840-mRNA-1:cds;Parent=Msa1275840-mRNA-1
chr8_3 three_prime_UTR 10074664 10074871 10074664 ID=Msa1275840-mRNA-1:three_prime_utr;Parent=Msa1275840-mRNA-1
chr8_3 three_prime_UTR 10074622 10074642 10074622 ID=Msa1275840-mRNA-1:three_prime_utr;Parent=Msa1275840-mRNA-1
Gene Sequence

>Msa1275840

ATGACTTCATTGGTGAAAGGTCTCTTTGATAAGCACGAAAAGGTGAAGGGAACTGTGGTGTTGATGCAAAAGAATGTGTTAGACATCAACGCACTCACTGCAGCTCAAAGCCCTACTGGTATCATTGGTGGTGCCATAGGTGCTATTGGTGATGTTGCTGGCAATATACTTGACACTGCCACTTCCTTCTTAGGCCGTTCTATAGCTCTCAAGTTGATTAGTGCTACAAGTGCTGATGGAACTGGAAAAGGAAAAGTTGGACAGGAAACATTTCTGAAAGGTATTCTTACCTCCATACCAACATTGGGAGACAAACAAAATGCTTTCAGTATTAATTTTGAATGGGACAGTGACATGGGAATTCCTGGAGCTTTTTACATCAAGAATTATATGCAAGGTGAATTCTTCCTTGTGAGTTTGACACTTGAAGATATTCCAAACCATGGATCCATCCACTTTGTTTGCAACTCATGGATTTACAATTCTAAAAAGTACAAAACCGACCGCATCTTCTTTGCCAACAAGACATACCTTCCAAGTGAAACACCGGCTCCATTAGTGTACTATAGACAAGAAGAGTTGAAGACTTTAAGAGGGGATGGAACAGGAGAGCGCAAGGAATGGGAAAGAATATATGATTATGATGTCTACAATGATTTGGGTGAGCCTGACTCGAAACCTCAATTGGCTCGTCAAATTCTTGGGGGATCGAGCGATTTCCCTTACCCTCGAAGGGGAAGAACCGGCAGAAGAAAAACTAAAACAGATCCTAACAGTGAGACTCGAAGTCCCACTGTTTACCTTCCAAGAGATGAATCATTTGGACACACAAAGTCATCAGACTTTCTTGTTTACATACTCAAATCAGCATCTCAGAATGTCATACCTCAATTGAGATCTGTAGTTACGTTACAACTCAATAACCCCGAGTTTAACACCTTTCAAGATGTGCGCTCTCTCTACGAGGGTGGAATTAAGCTTCCTACTGATGTACTAAGCCAGATTAGTCCAATACCATTGTTCAAGGAACTTTTCCGATCTGATGGTGAACAAGCACTTAAGTTTCCACCACCAAAAGTGATTCAAGTGGACCATTCTGCATGGCAGACTGATGAGGAATTTGCAAGGGAGATGATTGCTGGGGTGAATCCACACATCATCAAAAAACTCTCGGAGTTTCCACCAAAGAGCAAGCTAGATAGCCAAAAATTTGGTGATAACACCAGCACCATAACTAAAGAAAACTTGGAGCCAAACATGGGTGGGGTCACTGTAGAACAGGCTATCCAAAACAATAGATTGTACATACTTGATCACCACGACCCGCTCTTTCCATATTTGAGGAAAATAAATGCAAGTGAGACAAAGGCCTATGCTACTAGAACCATTCTTTTCTTGCAAGATAATGGAACTTTGAAGCCACTGGCCATTGAACTAAGCAGGCCACACCCTCAAGGTGATAGTTTTGGTCCTGTTAGCAATGTTTACTTGCCCGCAAGTGAAGGTGTTGAAGCATCAGTTTGGCTCCTTGCCAAGGCTTTTGTTGTTGTAAATGACTCCTGCTATCACCAACTTGTCAGCCATTGGTTGAATACCCATGCTGTTGTTGAGCCATTCGTCATAGCAACAAATAGGCATCTTAGTGTGGTTCACCCTATTCATAAACTCTTGCTTCCACATTATCGTGACACAATGAACATAAATGCACTTGCACGAAATGTCTTGGTCAATGCAGAGGGTATTATTGAATCAACTTTCTTGTGGGGAAATTATGCTTTGGAAATGTCTGCTGTTGTTTACAAGGATTGGAATTTCATTGAGCAAGGACTGCCTAATGATCTAATCAAAAGAGGAGTAGCTGTTGAGGATCCAGCCTCTCCTACTGGTCTCCGCCTTCTGATAGAGGATTATCCTTATGCTTCTGATGGACTAGAAATATGGGCTGCCATTAAGTCATGGGTTGGTGAATATGTGAATTTCTATTACAAGTCTGATGCAGCTATTGCACAAGATTCTGAACTCCAAGCATTCTGGAAAGAACTTGTAGAGGTTGGTCATGGTGACTTAAAGAATGCCACATGGTGGTTTAAGATGCAAACTCGTGAGGAGTTGATCGAAGCTTCCACCATCCTTATATGGATTGCTTCAGCACTTCATGCAGCTGTTAACTTTGGACAATATCCGTATGGAGGATATATCCTTAACCGACCAACAAAAAGTAGAAGATTCATGCCTGAGAAAGGATCACCTGAGTATGATGAGCTTGCTAAGGACTACCAGAAGACCTATTTGAGGACAATCACACCAAAGAATGATACTCTTACTGACTTGACCATTATAGAGGTCTTGTCAAGGCATGCTTCTGATGAGCAATACCTTGGAGATAGAATTGAAGGTGACAATTGGACTTCTGATACACAGCCAAAAGAAGCCTTCAAGAGGTTTGGAAAGAAGTTGGCTGAAATTGAGCAAAAACTCACTCAAAGGAACAATGATGAGACATTGAGGAATCGGTATGGACCTGTGAAGATGCCATACACTCTGCTTTACCCTTCTAGCGAGGAAGGATTGACTTGCAGAGGCATTCCCAACAGTATCTCCATCTAA
Protein sequence

>Msa1275840

MTSLVKGLFDKHEKVKGTVVLMQKNVLDINALTAAQSPTGIIGGAIGAIGDVAGNILDTATSFLGRSIALKLISATSADGTGKGKVGQETFLKGILTSIPTLGDKQNAFSINFEWDSDMGIPGAFYIKNYMQGEFFLVSLTLEDIPNHGSIHFVCNSWIYNSKKYKTDRIFFANKTYLPSETPAPLVYYRQEELKTLRGDGTGERKEWERIYDYDVYNDLGEPDSKPQLARQILGGSSDFPYPRRGRTGRRKTKTDPNSETRSPTVYLPRDESFGHTKSSDFLVYILKSASQNVIPQLRSVVTLQLNNPEFNTFQDVRSLYEGGIKLPTDVLSQISPIPLFKELFRSDGEQALKFPPPKVIQVDHSAWQTDEEFAREMIAGVNPHIIKKLSEFPPKSKLDSQKFGDNTSTITKENLEPNMGGVTVEQAIQNNRLYILDHHDPLFPYLRKINASETKAYATRTILFLQDNGTLKPLAIELSRPHPQGDSFGPVSNVYLPASEGVEASVWLLAKAFVVVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGNYALEMSAVVYKDWNFIEQGLPNDLIKRGVAVEDPASPTGLRLLIEDYPYASDGLEIWAAIKSWVGEYVNFYYKSDAAIAQDSELQAFWKELVEVGHGDLKNATWWFKMQTREELIEASTILIWIASALHAAVNFGQYPYGGYILNRPTKSRRFMPEKGSPEYDELAKDYQKTYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGDRIEGDNWTSDTQPKEAFKRFGKKLAEIEQKLTQRNNDETLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI*