Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233670 | XP_003627201.2 | 98.704 | 540 | 7 | 0 | 1 | 540 | 325 | 864 | 0.0 | 1104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233670 | sp|P24095|LOXX_SOYBN | 80.812 | 542 | 102 | 1 | 1 | 540 | 323 | 864 | 0.0 | 919 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233670 | G7LIZ7 | 98.704 | 540 | 7 | 0 | 1 | 540 | 325 | 864 | 0.0 | 1104 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657710 | Msa1233670 | 0.817247 | 3.641209e-52 | -8.615850e-47 |
| Msa0702790 | Msa1233670 | 0.802381 | 5.764062e-49 | -8.615850e-47 |
| Msa0702800 | Msa1233670 | 0.820708 | 5.946162e-53 | -8.615850e-47 |
| Msa0828960 | Msa1233670 | 0.815197 | 1.045643e-51 | -8.615850e-47 |
| Msa1233620 | Msa1233670 | 0.864820 | 9.236338e-65 | -8.615850e-47 |
| Msa1233670 | Msa1237640 | 0.802902 | 4.501032e-49 | -8.615850e-47 |
| Msa1233670 | Msa1275840 | 0.833095 | 6.493535e-56 | -8.615850e-47 |
| Msa1233670 | Msa1275930 | 0.939696 | 8.233548e-100 | -8.615850e-47 |
| Msa1233670 | Msa1314020 | 0.846702 | 1.839480e-59 | -8.615850e-47 |
| Msa1233670 | Msa1314080 | 0.936255 | 2.325546e-97 | -8.615850e-47 |
| Msa1233670 | Msa1314190 | 0.831116 | 2.002559e-55 | -8.615850e-47 |
| Msa1233670 | Msa1407810 | 0.818877 | 1.558157e-52 | -8.615850e-47 |
| Msa1233670 | Msa1433360 | 0.817714 | 2.857345e-52 | -8.615850e-47 |
| Msa1233670 | Msa1437780 | 0.819216 | 1.304817e-52 | -8.615850e-47 |
| Msa1029820 | Msa1233670 | 0.826244 | 3.017143e-54 | -8.615850e-47 |
| Msa1068940 | Msa1233670 | 0.836317 | 1.004213e-56 | -8.615850e-47 |
| Msa1156710 | Msa1233670 | 0.822136 | 2.783474e-53 | -8.615850e-47 |
| Msa1179140 | Msa1233670 | 0.986296 | 2.572726e-166 | -8.615850e-47 |
| Msa1179180 | Msa1233670 | 0.803204 | 3.898177e-49 | -8.615850e-47 |
| Msa1179190 | Msa1233670 | 0.853898 | 1.762525e-61 | -8.615850e-47 |
| Msa0567330 | Msa1233670 | 0.816242 | 6.115944e-52 | -8.615850e-47 |
| Msa0567570 | Msa1233670 | 0.812273 | 4.607037e-51 | -8.615850e-47 |
| Msa0576320 | Msa1233670 | 0.806512 | 7.935819e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233670 | MtrunA17_Chr8g0343021 | 98.704 | 540 | 7 | 0 | 1 | 540 | 325 | 864 | 0.0 | 1104 |
| Msa1233670 | MtrunA17_Chr8g0343031 | 91.296 | 540 | 47 | 0 | 1 | 540 | 326 | 865 | 0.0 | 1034 |
| Msa1233670 | MtrunA17_Chr5g0406871 | 86.111 | 540 | 75 | 0 | 1 | 540 | 328 | 867 | 0.0 | 980 |
| Msa1233670 | MtrunA17_Chr2g0329901 | 75.416 | 541 | 130 | 2 | 1 | 540 | 325 | 863 | 0.0 | 859 |
| Msa1233670 | MtrunA17_Chr8g0342881 | 73.801 | 542 | 140 | 2 | 1 | 540 | 315 | 856 | 0.0 | 850 |
| Msa1233670 | MtrunA17_Chr2g0329911 | 73.383 | 541 | 143 | 1 | 1 | 540 | 321 | 861 | 0.0 | 838 |
| Msa1233670 | MtrunA17_Chr3g0120071 | 71.033 | 542 | 155 | 2 | 1 | 540 | 317 | 858 | 0.0 | 804 |
| Msa1233670 | MtrunA17_Chr8g0342971 | 67.528 | 542 | 174 | 2 | 1 | 540 | 329 | 870 | 0.0 | 788 |
| Msa1233670 | MtrunA17_Chr8g0342951 | 68.382 | 544 | 166 | 3 | 1 | 540 | 327 | 868 | 0.0 | 785 |
| Msa1233670 | MtrunA17_Chr8g0342921 | 67.772 | 543 | 171 | 3 | 1 | 540 | 328 | 869 | 0.0 | 778 |
| Msa1233670 | MtrunA17_Chr8g0342891 | 66.052 | 542 | 182 | 2 | 1 | 540 | 320 | 861 | 0.0 | 776 |
| Msa1233670 | MtrunA17_Chr8g0342931 | 66.052 | 542 | 182 | 2 | 1 | 540 | 209 | 750 | 0.0 | 767 |
| Msa1233670 | MtrunA17_Chr8g0344211 | 65.498 | 542 | 185 | 2 | 1 | 540 | 327 | 868 | 0.0 | 763 |
| Msa1233670 | MtrunA17_Chr8g0343011 | 65.314 | 542 | 186 | 2 | 1 | 540 | 324 | 865 | 0.0 | 753 |
| Msa1233670 | MtrunA17_Chr1g0191921 | 66.983 | 527 | 173 | 1 | 15 | 540 | 332 | 858 | 0.0 | 742 |
| Msa1233670 | MtrunA17_Chr7g0272791 | 65.160 | 531 | 184 | 1 | 11 | 540 | 337 | 867 | 0.0 | 739 |
| Msa1233670 | MtrunA17_Chr1g0205611 | 63.401 | 541 | 192 | 2 | 6 | 540 | 316 | 856 | 0.0 | 735 |
| Msa1233670 | MtrunA17_Chr8g0342901 | 65.259 | 521 | 173 | 3 | 26 | 540 | 310 | 828 | 0.0 | 721 |
| Msa1233670 | MtrunA17_Chr8g0343001 | 59.434 | 530 | 195 | 5 | 14 | 540 | 295 | 807 | 0.0 | 653 |
| Msa1233670 | MtrunA17_Chr8g0342991 | 60.425 | 518 | 181 | 7 | 28 | 540 | 309 | 807 | 0.0 | 644 |
| Msa1233670 | MtrunA17_Chr8g0342981 | 56.856 | 547 | 225 | 6 | 3 | 540 | 279 | 823 | 0.0 | 628 |
| Msa1233670 | MtrunA17_Chr8g0344241 | 65.063 | 395 | 137 | 1 | 147 | 540 | 67 | 461 | 0.0 | 551 |
| Msa1233670 | MtrunA17_Chr8g0344201 | 50.184 | 544 | 263 | 6 | 1 | 539 | 386 | 926 | 0.0 | 546 |
| Msa1233670 | MtrunA17_Chr8g0377101 | 49.718 | 531 | 259 | 5 | 15 | 540 | 389 | 916 | 0.0 | 535 |
| Msa1233670 | MtrunA17_Chr4g0033171 | 47.955 | 538 | 271 | 6 | 10 | 540 | 190 | 725 | 9.16e-171 | 500 |
| Msa1233670 | MtrunA17_Chr3g0118651 | 46.578 | 526 | 271 | 6 | 22 | 540 | 381 | 903 | 4.38e-165 | 491 |
| Msa1233670 | MtrunA17_Chr4g0047281 | 45.143 | 525 | 276 | 4 | 19 | 539 | 378 | 894 | 1.08e-161 | 483 |
| Msa1233670 | MtrunA17_Chr3g0118641 | 45.143 | 525 | 280 | 5 | 22 | 540 | 380 | 902 | 8.28e-158 | 473 |
| Msa1233670 | MtrunA17_Chr8g0338451 | 44.023 | 527 | 280 | 8 | 1 | 521 | 331 | 848 | 1.07e-153 | 461 |
| Msa1233670 | MtrunA17_Chr3g0118621 | 45.437 | 526 | 278 | 6 | 22 | 540 | 342 | 865 | 5.05e-146 | 441 |
| Msa1233670 | MtrunA17_Chr6g0471951 | 41.292 | 511 | 255 | 7 | 1 | 505 | 13 | 484 | 3.26e-139 | 411 |
| Msa1233670 | MtrunA17_Chr7g0218231 | 57.258 | 124 | 52 | 1 | 188 | 310 | 9 | 132 | 1.33e-41 | 146 |
| Msa1233670 | MtrunA17_Chr6g0468081 | 56.180 | 89 | 38 | 1 | 223 | 310 | 1 | 89 | 1.07e-25 | 101 |
| Msa1233670 | MtrunA17_Chr3g0137991 | 40.476 | 126 | 56 | 3 | 417 | 540 | 1 | 109 | 4.02e-19 | 82.8 |
| Msa1233670 | MtrunA17_Chr7g0272781 | 51.613 | 62 | 30 | 0 | 433 | 494 | 8 | 69 | 1.10e-15 | 72.8 |
| Msa1233670 | MtrunA17_Chr2g0277191 | 50.909 | 55 | 27 | 0 | 414 | 468 | 58 | 112 | 1.65e-14 | 70.1 |
| Msa1233670 | MtrunA17_Chr4g0047271 | 40.659 | 91 | 53 | 1 | 450 | 539 | 1 | 91 | 1.92e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233670 | AT1G55020.1 | 63.910 | 532 | 189 | 3 | 11 | 540 | 329 | 859 | 0.0 | 722 |
| Msa1233670 | AT3G22400.1 | 59.704 | 541 | 212 | 2 | 6 | 540 | 346 | 886 | 0.0 | 703 |
| Msa1233670 | AT1G72520.1 | 48.972 | 535 | 267 | 5 | 11 | 540 | 393 | 926 | 0.0 | 536 |
| Msa1233670 | AT1G17420.1 | 48.339 | 542 | 272 | 7 | 4 | 540 | 381 | 919 | 0.0 | 533 |
| Msa1233670 | AT1G67560.1 | 50.095 | 529 | 246 | 6 | 24 | 540 | 395 | 917 | 5.95e-174 | 515 |
| Msa1233670 | AT3G45140.2 | 48.052 | 539 | 267 | 7 | 12 | 540 | 219 | 754 | 3.55e-170 | 500 |
| Msa1233670 | AT3G45140.1 | 48.052 | 539 | 267 | 7 | 12 | 540 | 361 | 896 | 4.31e-169 | 502 |
Find 145 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAACATCACTGCTGTATT+TGG | 0.113928 | 8_2:+10561461 | Msa1233670:three_prime_UTR |
| TGATGCATTCATGCCATATT+TGG | 0.131415 | 8_2:+10559678 | Msa1233670:CDS |
| AATCATCACATTGATGTTAT+TGG | 0.174734 | 8_2:-10561394 | None:intergenic |
| TCTTGAACAGTTTGCATCTT+TGG | 0.184786 | 8_2:-10560828 | None:intergenic |
| GGGCTGGCAAGGGGCTAATT+TGG | 0.203250 | 8_2:-10558957 | None:intergenic |
| CTTCTGCAGTTTACAAGAAT+TGG | 0.212735 | 8_2:+10560310 | Msa1233670:CDS |
| GGGAATAAAAGCTTATAAAT+TGG | 0.214154 | 8_2:-10560177 | None:intergenic |
| AATCTTGCTCCATTATTATA+TGG | 0.238471 | 8_2:+10560859 | Msa1233670:CDS |
| AAATTTATCCTCTCCAAATA+TGG | 0.251076 | 8_2:-10559691 | None:intergenic |
| TGGAATACTGATGAAGAATT+TGG | 0.277138 | 8_2:+10559265 | Msa1233670:CDS |
| GAAGAAATCTCAATGGAATT+TGG | 0.280136 | 8_2:-10560291 | None:intergenic |
| GAGAGAATAATAACAAGTTT+TGG | 0.287246 | 8_2:+10561123 | Msa1233670:CDS |
| AGAAATATGGGATGCTATTA+AGG | 0.290191 | 8_2:+10560674 | Msa1233670:CDS |
| CAGTTGATGGACTAGAAATA+TGG | 0.290720 | 8_2:+10560661 | Msa1233670:CDS |
| TACTAATTGTTGGACGGTTC+AGG | 0.290734 | 8_2:-10560941 | None:intergenic |
| TTTGTGGAACAGGCACTTAA+TGG | 0.292803 | 8_2:+10559628 | Msa1233670:intron |
| ATTTATTGTGTCACGGTAAT+GGG | 0.293937 | 8_2:-10560199 | None:intergenic |
| TCATCGTATTCCGGTGTTCC+TGG | 0.300828 | 8_2:-10560981 | None:intergenic |
| ACATTAGATGCCACTGTCTA+TGG | 0.313484 | 8_2:+10559456 | Msa1233670:CDS |
| CTTTGCTTTCAGCACCATAT+TGG | 0.318853 | 8_2:-10559816 | None:intergenic |
| TAGCCCCTTGCCAGCCCTTA+AGG | 0.335485 | 8_2:+10558963 | Msa1233670:CDS |
| ATAACATCAATGTGATGATT+AGG | 0.336707 | 8_2:+10561397 | Msa1233670:three_prime_UTR |
| CTTGAGGTGGTGGAAACTTA+AGG | 0.348578 | 8_2:-10559014 | None:intergenic |
| GTTCAAGCCTTCCGAAAGTT+TGG | 0.348767 | 8_2:+10561164 | Msa1233670:CDS |
| AAACTTAATTCGATGGCTAA+TGG | 0.354943 | 8_2:-10559775 | None:intergenic |
| TTTACCATCTCATCGTATTC+CGG | 0.356702 | 8_2:-10560990 | None:intergenic |
| ATTTGCACTGCCTCGTCTGT+TGG | 0.361300 | 8_2:-10560729 | None:intergenic |
| CACTCAAATGGGGTCCAATA+TGG | 0.361963 | 8_2:+10559802 | Msa1233670:CDS |
| CTGTGCGGAGGATTTCCTTA+AGG | 0.365223 | 8_2:-10558978 | None:intergenic |
| CCACCACCTCAAGTAATTAG+AGG | 0.377836 | 8_2:+10559024 | Msa1233670:CDS |
| TATTTATTGTGTCACGGTAA+TGG | 0.387187 | 8_2:-10560200 | None:intergenic |
| TTGAGGTGGTGGAAACTTAA+GGG | 0.387785 | 8_2:-10559013 | None:intergenic |
| TGTGCGGAGGATTTCCTTAA+GGG | 0.389865 | 8_2:-10558977 | None:intergenic |
| GGAATAAAAGCTTATAAATT+GGG | 0.391404 | 8_2:-10560176 | None:intergenic |
| TGAAGAAGACGAATCACATT+AGG | 0.393551 | 8_2:-10559313 | None:intergenic |
| TAAGTTTGCCACACTCAAAT+GGG | 0.403015 | 8_2:+10559791 | Msa1233670:CDS |
| TCTAGTCCATCAACTGCATA+AGG | 0.403122 | 8_2:-10560654 | None:intergenic |
| TCAACAAGGGTTTGGTACTT+TGG | 0.409673 | 8_2:-10561047 | None:intergenic |
| CTCCTTCGTTCAAGTGAAGA+AGG | 0.413433 | 8_2:+10561284 | Msa1233670:CDS |
| ATAAATCTTCTACTAATTGT+TGG | 0.413529 | 8_2:-10560951 | None:intergenic |
| TTCTGCAGTTTACAAGAATT+GGG | 0.413547 | 8_2:+10560311 | Msa1233670:CDS |
| ATCTTGTTCTTGCAAGATGA+TGG | 0.413720 | 8_2:+10559742 | Msa1233670:CDS |
| ATAGTTTGCTTCCAAACTTT+CGG | 0.426411 | 8_2:-10561175 | None:intergenic |
| CTATTTGTTGCTATGATGAA+TGG | 0.428310 | 8_2:-10560135 | None:intergenic |
| ACAACATCACTGCTGTATTT+GGG | 0.428770 | 8_2:+10561462 | Msa1233670:three_prime_UTR |
| TTTGCACTGCCTCGTCTGTT+GGG | 0.433619 | 8_2:-10560728 | None:intergenic |
| AGCAAACTATCTGAAATTGA+AGG | 0.433677 | 8_2:+10561188 | Msa1233670:CDS |
| TTAAGTTTGCCACACTCAAA+TGG | 0.434747 | 8_2:+10559790 | Msa1233670:CDS |
| CTCGTCTGTTGGGTAGTATA+AGG | 0.436885 | 8_2:-10560718 | None:intergenic |
| TACATGGTGCAAAGCAATAG+TGG | 0.452805 | 8_2:-10561521 | None:intergenic |
| CGAAGGCCATGAGGGGAAGA+TGG | 0.454773 | 8_2:-10560612 | None:intergenic |
| GACTACCCTTATGCAGTTGA+TGG | 0.458971 | 8_2:+10560648 | Msa1233670:CDS |
| CATTATTATATGGACTGCTT+CGG | 0.459516 | 8_2:+10560869 | Msa1233670:CDS |
| CACTTTACTATATGTGAAAG+TGG | 0.463123 | 8_2:-10561546 | None:intergenic |
| CGAAGCAGTCCATATAATAA+TGG | 0.464772 | 8_2:-10560868 | None:intergenic |
| AAGGTGTCGAAAGTACAATT+TGG | 0.471544 | 8_2:+10559857 | Msa1233670:CDS |
| AATTAGTAGAAGATTTATTC+CGG | 0.472215 | 8_2:+10560956 | Msa1233670:CDS |
| CAGAAAGATCAACAAGGGTT+TGG | 0.472356 | 8_2:-10561055 | None:intergenic |
| GTGGAAGGAAGCTGTAGAAA+AGG | 0.472990 | 8_2:+10560773 | Msa1233670:CDS |
| GATTTCCTTAAGGGCTGGCA+AGG | 0.476480 | 8_2:-10558968 | None:intergenic |
| ATCTCAATGGAATTTGGTCC+AGG | 0.477443 | 8_2:-10560285 | None:intergenic |
| TTTGGAAGAGAGATGCTTGC+TGG | 0.480541 | 8_2:+10559283 | Msa1233670:CDS |
| CTTTCGACACCTTCGTGTGC+AGG | 0.481903 | 8_2:-10559847 | None:intergenic |
| ACTAGACTCATTGTTCCTCT+TGG | 0.485140 | 8_2:-10561219 | None:intergenic |
| GAACACTTAGAGACTAATCT+TGG | 0.485357 | 8_2:+10559504 | Msa1233670:CDS |
| CGAAAGTACAATTTGGATGT+TGG | 0.485918 | 8_2:+10559864 | Msa1233670:CDS |
| CGGAGGATTTCCTTAAGGGC+TGG | 0.491033 | 8_2:-10558973 | None:intergenic |
| TATTAAATAGAGATACTGTT+GGG | 0.494456 | 8_2:-10561326 | None:intergenic |
| TGGCCTTCGTCTTGTGATAG+AGG | 0.494640 | 8_2:+10560626 | Msa1233670:CDS |
| CGTGACACAATAAATATCAA+TGG | 0.495773 | 8_2:+10560207 | Msa1233670:CDS |
| GCGTCCGATGAAGTGTATCT+TGG | 0.497267 | 8_2:+10561101 | Msa1233670:CDS |
| AGAAGATTTATTCCGGAGCC+AGG | 0.498580 | 8_2:+10560963 | Msa1233670:CDS |
| GAGGATCCATCTTCCCCTCA+TGG | 0.504857 | 8_2:+10560606 | Msa1233670:CDS |
| TACCTCTTGATAAGATCAGC+TGG | 0.505206 | 8_2:-10560354 | None:intergenic |
| CTATTAAATAGAGATACTGT+TGG | 0.508266 | 8_2:-10561327 | None:intergenic |
| CGACAAGCTCTAATCAATGC+TGG | 0.510064 | 8_2:+10560237 | Msa1233670:CDS |
| AACTTCGGACAATATCCTTA+CGG | 0.512858 | 8_2:+10560909 | Msa1233670:CDS |
| ATCATCAACTCATGAGCCAT+TGG | 0.514587 | 8_2:+10559920 | Msa1233670:CDS |
| AACCTTCTTCACTTGAACGA+AGG | 0.515488 | 8_2:-10561286 | None:intergenic |
| TATTCCGGTGTTCCTGGCTC+CGG | 0.516922 | 8_2:-10560975 | None:intergenic |
| GATGCAAACTGTTCAAGACT+TGG | 0.520407 | 8_2:+10560833 | Msa1233670:CDS |
| CTAGTCCATCAACTGCATAA+GGG | 0.524434 | 8_2:-10560653 | None:intergenic |
| ATTTCCTTAAGGGCTGGCAA+GGG | 0.524741 | 8_2:-10558967 | None:intergenic |
| GAACGAAGGAGCAAAGTGTA+TGG | 0.526003 | 8_2:-10561272 | None:intergenic |
| ATCTTCTACTAATTGTTGGA+CGG | 0.527713 | 8_2:-10560947 | None:intergenic |
| GAAGAAGGTTTAACATTCAG+AGG | 0.528130 | 8_2:+10561299 | Msa1233670:CDS |
| CCTCTAATTACTTGAGGTGG+TGG | 0.533059 | 8_2:-10559024 | None:intergenic |
| CATTGATATTTATTGTGTCA+CGG | 0.537197 | 8_2:-10560206 | None:intergenic |
| TACAATTTGGATGTTGGCAA+AGG | 0.537477 | 8_2:+10559870 | Msa1233670:CDS |
| AACTGCAGAAGAAATCTCAA+TGG | 0.538818 | 8_2:-10560298 | None:intergenic |
| TCTTGTTCTTGCAAGATGAT+GGG | 0.539913 | 8_2:+10559743 | Msa1233670:CDS |
| GTGCAAAAGCTTACGCTACA+AGG | 0.541604 | 8_2:+10559716 | Msa1233670:CDS |
| ATGCATCATGGTAATCTAAG+AGG | 0.548431 | 8_2:-10559663 | None:intergenic |
| AAGGAAATCCTCCGCACAGA+TGG | 0.559147 | 8_2:+10558982 | Msa1233670:CDS |
| GTATGGCAATTGCACTGGTC+CGG | 0.560938 | 8_2:-10561255 | None:intergenic |
| AGTTGATGGACTAGAAATAT+GGG | 0.561136 | 8_2:+10560662 | Msa1233670:CDS |
| GTTGAATACTCATGCAGTGA+TGG | 0.563079 | 8_2:+10560110 | Msa1233670:CDS |
| AAAGTGTATGGCAATTGCAC+TGG | 0.566509 | 8_2:-10561260 | None:intergenic |
| ATGGGATGCTATTAAGGCAT+GGG | 0.568340 | 8_2:+10560680 | Msa1233670:CDS |
| TTTCCTTAAGGGCTGGCAAG+GGG | 0.571197 | 8_2:-10558966 | None:intergenic |
| TGGAAGGAAGCTGTAGAAAA+GGG | 0.576005 | 8_2:+10560774 | Msa1233670:CDS |
| CTTCATGCAGCTGTTAACTT+CGG | 0.576471 | 8_2:+10560894 | Msa1233670:CDS |
| ATCCAGAGGATTAGCTGTTG+AGG | 0.576843 | 8_2:+10560587 | Msa1233670:intron |
| GTGTGGCAAACTTAATTCGA+TGG | 0.576956 | 8_2:-10559782 | None:intergenic |
| GTTTGCATCTTTGGCCACCA+TGG | 0.578178 | 8_2:-10560819 | None:intergenic |
| TTTGCTTCCAAACTTTCGGA+AGG | 0.578814 | 8_2:-10561171 | None:intergenic |
| GCAAACTATCTGAAATTGAA+GGG | 0.581205 | 8_2:+10561189 | Msa1233670:CDS |
| TTTATTGTGTCACGGTAATG+GGG | 0.581682 | 8_2:-10560198 | None:intergenic |
| CTCTCCAAGATACACTTCAT+CGG | 0.582621 | 8_2:-10561105 | None:intergenic |
| TTCAGGATATATCCTCCGTA+AGG | 0.586657 | 8_2:-10560924 | None:intergenic |
| TATTCCGGAGCCAGGAACAC+CGG | 0.587335 | 8_2:+10560971 | Msa1233670:CDS |
| TGGTGATATCACAGTAGAAG+AGG | 0.588913 | 8_2:+10559524 | Msa1233670:CDS |
| AGTATAAGGAGACATAGTCT+TGG | 0.589308 | 8_2:-10560704 | None:intergenic |
| TATGGGATGCTATTAAGGCA+TGG | 0.595717 | 8_2:+10560679 | Msa1233670:CDS |
| GTGTAGTTAGCAAGTCTGCA+TGG | 0.598393 | 8_2:+10559245 | Msa1233670:intron |
| CATTCATGCCATATTTGGAG+AGG | 0.604180 | 8_2:+10559683 | Msa1233670:CDS |
| CTTGTTCACCATCTGTGCGG+AGG | 0.604396 | 8_2:-10558990 | None:intergenic |
| AATATGGCATGAATGCATCA+TGG | 0.606974 | 8_2:-10559675 | None:intergenic |
| TTTAATAGAAAATGTGTGTG+TGG | 0.616045 | 8_2:+10561342 | Msa1233670:exon |
| CAATCACAGAAAGATCAACA+AGG | 0.616597 | 8_2:-10561061 | None:intergenic |
| TACCAGCTGATCTTATCAAG+AGG | 0.619833 | 8_2:+10560352 | Msa1233670:CDS |
| AACACCGGAATACGATGAGA+TGG | 0.628633 | 8_2:+10560986 | Msa1233670:CDS |
| AAAGTACCTCTAATTACTTG+AGG | 0.628706 | 8_2:-10559030 | None:intergenic |
| ATTTGGCTGAGTATATCTGT+AGG | 0.631512 | 8_2:-10558940 | None:intergenic |
| TCACAAGACGAAGGCCATGA+GGG | 0.633405 | 8_2:-10560620 | None:intergenic |
| TTATTGTGTCACGGTAATGG+GGG | 0.638293 | 8_2:-10560197 | None:intergenic |
| TATTGGACCCCATTTGAGTG+TGG | 0.645377 | 8_2:-10559799 | None:intergenic |
| ATCACAAGACGAAGGCCATG+AGG | 0.648706 | 8_2:-10560621 | None:intergenic |
| GTACCTCTAATTACTTGAGG+TGG | 0.648845 | 8_2:-10559027 | None:intergenic |
| AAGTTTGCCACACTCAAATG+GGG | 0.650150 | 8_2:+10559792 | Msa1233670:CDS |
| GCAATTGCACTGGTCCGGTG+CGG | 0.652639 | 8_2:-10561250 | None:intergenic |
| ATATGTGAAAGTGGAATACA+TGG | 0.653339 | 8_2:-10561537 | None:intergenic |
| CACAAGACGAAGGCCATGAG+GGG | 0.654691 | 8_2:-10560619 | None:intergenic |
| GAAGCTGTAGAAAAGGGTCA+TGG | 0.659592 | 8_2:+10560780 | Msa1233670:CDS |
| CTTATACTACCCAACAGACG+AGG | 0.678166 | 8_2:+10560719 | Msa1233670:CDS |
| AATCACAGAAAGATCAACAA+GGG | 0.683243 | 8_2:-10561060 | None:intergenic |
| ACTTGAAAGACAAGCCATGG+TGG | 0.686194 | 8_2:+10560805 | Msa1233670:CDS |
| CAAGCTCTAATCAATGCTGG+CGG | 0.688699 | 8_2:+10560240 | Msa1233670:CDS |
| GGGCTTGTTCACCATCTGTG+CGG | 0.689865 | 8_2:-10558993 | None:intergenic |
| GTGACTTGAAAGACAAGCCA+TGG | 0.691001 | 8_2:+10560802 | Msa1233670:CDS |
| TTGAAGGGAAAATTACCAAG+AGG | 0.691735 | 8_2:+10561204 | Msa1233670:CDS |
| TTCGGACAATATCCTTACGG+AGG | 0.701012 | 8_2:+10560912 | Msa1233670:CDS |
| TCTAGTTTGAGAAACCGCAC+CGG | 0.712219 | 8_2:+10561236 | Msa1233670:CDS |
| GTATTCTTGCCTGCACACGA+AGG | 0.719494 | 8_2:+10559838 | Msa1233670:CDS |
| AGTCCTCTATCACAAGACGA+AGG | 0.740779 | 8_2:-10560629 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTTTTTGATATAAC+AGG | + | chr8_2:10559416-10559435 | Msa1233670:intron | 10.0% |
| !!! | AATTTTTTCATTAATAATCG+TGG | - | chr8_2:10560077-10560096 | None:intergenic | 15.0% |
| !!! | ATGTATAATTATTTTCTCTA+TGG | + | chr8_2:10561423-10561442 | Msa1233670:three_prime_UTR | 15.0% |
| !! | AAGTTTCAATTAAAAGTCAT+TGG | + | chr8_2:10559560-10559579 | Msa1233670:intron | 20.0% |
| !! | TGTGATTGAAATTAAATTTG+TGG | + | chr8_2:10559612-10559631 | Msa1233670:intron | 20.0% |
| !! | GGAATAAAAGCTTATAAATT+GGG | - | chr8_2:10560179-10560198 | None:intergenic | 20.0% |
| !!! | AAACACATTTTATCATTAGA+GGG | - | chr8_2:10560453-10560472 | None:intergenic | 20.0% |
| !!! | TAAACACATTTTATCATTAG+AGG | - | chr8_2:10560454-10560473 | None:intergenic | 20.0% |
| !! | ATAAATCTTCTACTAATTGT+TGG | - | chr8_2:10560954-10560973 | None:intergenic | 20.0% |
| !! | AATTAGTAGAAGATTTATTC+CGG | + | chr8_2:10560956-10560975 | Msa1233670:CDS | 20.0% |
| !! | TATTAAATAGAGATACTGTT+GGG | - | chr8_2:10561329-10561348 | None:intergenic | 20.0% |
| ! | TGAAATTAAATTTGTGGAAC+AGG | + | chr8_2:10559618-10559637 | Msa1233670:intron | 25.0% |
| ! | AAATTTATCCTCTCCAAATA+TGG | - | chr8_2:10559694-10559713 | None:intergenic | 25.0% |
| ! | TCTATATAATACATAACCCT+TGG | + | chr8_2:10559988-10560007 | Msa1233670:intron | 25.0% |
| ! | GAAAAAATTTATGACATTGC+AGG | + | chr8_2:10560088-10560107 | Msa1233670:intron | 25.0% |
| ! | GGGAATAAAAGCTTATAAAT+TGG | - | chr8_2:10560180-10560199 | None:intergenic | 25.0% |
| ! | CATTGATATTTATTGTGTCA+CGG | - | chr8_2:10560209-10560228 | None:intergenic | 25.0% |
| !! | AACACATTTTATCATTAGAG+GGG | - | chr8_2:10560452-10560471 | None:intergenic | 25.0% |
| ! | TACATTTACTTGAGAATGTA+TGG | - | chr8_2:10560505-10560524 | None:intergenic | 25.0% |
| !!! | GTTATGACAAACTTGTTAAT+TGG | + | chr8_2:10560540-10560559 | Msa1233670:intron | 25.0% |
| ! | TAGACACTGAAATTCAAAAA+TGG | + | chr8_2:10560751-10560770 | Msa1233670:CDS | 25.0% |
| ! | AATCTTGCTCCATTATTATA+TGG | + | chr8_2:10560859-10560878 | Msa1233670:CDS | 25.0% |
| !! | GAGAGAATAATAACAAGTTT+TGG | + | chr8_2:10561123-10561142 | Msa1233670:CDS | 25.0% |
| ! | CTATTAAATAGAGATACTGT+TGG | - | chr8_2:10561330-10561349 | None:intergenic | 25.0% |
| ! | TTTAATAGAAAATGTGTGTG+TGG | + | chr8_2:10561342-10561361 | Msa1233670:exon | 25.0% |
| ! | AATCATCACATTGATGTTAT+TGG | - | chr8_2:10561397-10561416 | None:intergenic | 25.0% |
| ! | ATAACATCAATGTGATGATT+AGG | + | chr8_2:10561397-10561416 | Msa1233670:three_prime_UTR | 25.0% |
| ! | AAAGTACCTCTAATTACTTG+AGG | - | chr8_2:10559033-10559052 | None:intergenic | 30.0% |
| !!! | TAAAACTCGTGTTTTTTCTC+AGG | + | chr8_2:10559130-10559149 | Msa1233670:intron | 30.0% |
| TGGAATACTGATGAAGAATT+TGG | + | chr8_2:10559265-10559284 | Msa1233670:CDS | 30.0% | |
| AAACTTAATTCGATGGCTAA+TGG | - | chr8_2:10559778-10559797 | None:intergenic | 30.0% | |
| CTATGAAGAATTCATACCAA+TGG | - | chr8_2:10559939-10559958 | None:intergenic | 30.0% | |
| GTATGTAACTATATCTGCAT+CGG | - | chr8_2:10560014-10560033 | None:intergenic | 30.0% | |
| ! | CTATTTGTTGCTATGATGAA+TGG | - | chr8_2:10560138-10560157 | None:intergenic | 30.0% |
| ATTTATTGTGTCACGGTAAT+GGG | - | chr8_2:10560202-10560221 | None:intergenic | 30.0% | |
| TATTTATTGTGTCACGGTAA+TGG | - | chr8_2:10560203-10560222 | None:intergenic | 30.0% | |
| CGTGACACAATAAATATCAA+TGG | + | chr8_2:10560207-10560226 | Msa1233670:CDS | 30.0% | |
| ! | ATAGAACAAACATTTTGTCC+TGG | + | chr8_2:10560267-10560286 | Msa1233670:CDS | 30.0% |
| GAAGAAATCTCAATGGAATT+TGG | - | chr8_2:10560294-10560313 | None:intergenic | 30.0% | |
| TTCTGCAGTTTACAAGAATT+GGG | + | chr8_2:10560311-10560330 | Msa1233670:CDS | 30.0% | |
| TTATATGTTCTCATGAGTCT+TGG | - | chr8_2:10560388-10560407 | None:intergenic | 30.0% | |
| ! | ACACATTTTATCATTAGAGG+GGG | - | chr8_2:10560451-10560470 | None:intergenic | 30.0% |
| !! | AGTTGATGGACTAGAAATAT+GGG | + | chr8_2:10560662-10560681 | Msa1233670:CDS | 30.0% |
| AGAAATATGGGATGCTATTA+AGG | + | chr8_2:10560674-10560693 | Msa1233670:CDS | 30.0% | |
| ACACTGAAATTCAAAAATGG+TGG | + | chr8_2:10560754-10560773 | Msa1233670:CDS | 30.0% | |
| ! | TGAAATTCAAAAATGGTGGA+AGG | + | chr8_2:10560758-10560777 | Msa1233670:CDS | 30.0% |
| ! | CATTATTATATGGACTGCTT+CGG | + | chr8_2:10560869-10560888 | Msa1233670:CDS | 30.0% |
| ATCTTCTACTAATTGTTGGA+CGG | - | chr8_2:10560950-10560969 | None:intergenic | 30.0% | |
| AATCACAGAAAGATCAACAA+GGG | - | chr8_2:10561063-10561082 | None:intergenic | 30.0% | |
| !! | ATAGTTTGCTTCCAAACTTT+CGG | - | chr8_2:10561178-10561197 | None:intergenic | 30.0% |
| ! | AGCAAACTATCTGAAATTGA+AGG | + | chr8_2:10561188-10561207 | Msa1233670:CDS | 30.0% |
| ! | GCAAACTATCTGAAATTGAA+GGG | + | chr8_2:10561189-10561208 | Msa1233670:CDS | 30.0% |
| ATATGTGAAAGTGGAATACA+TGG | - | chr8_2:10561540-10561559 | None:intergenic | 30.0% | |
| CACTTTACTATATGTGAAAG+TGG | - | chr8_2:10561549-10561568 | None:intergenic | 30.0% | |
| ATTTGGCTGAGTATATCTGT+AGG | - | chr8_2:10558943-10558962 | None:intergenic | 35.0% | |
| ACGAACATGTTAACTATAGG+TGG | - | chr8_2:10559072-10559091 | None:intergenic | 35.0% | |
| GTGACGAACATGTTAACTAT+AGG | - | chr8_2:10559075-10559094 | None:intergenic | 35.0% | |
| TGAAGAAGACGAATCACATT+AGG | - | chr8_2:10559316-10559335 | None:intergenic | 35.0% | |
| !! | CATCTAATGTGCTTTTTGGT+GGG | - | chr8_2:10559446-10559465 | None:intergenic | 35.0% |
| GAACACTTAGAGACTAATCT+TGG | + | chr8_2:10559504-10559523 | Msa1233670:CDS | 35.0% | |
| ATGCATCATGGTAATCTAAG+AGG | - | chr8_2:10559666-10559685 | None:intergenic | 35.0% | |
| AATATGGCATGAATGCATCA+TGG | - | chr8_2:10559678-10559697 | None:intergenic | 35.0% | |
| TGATGCATTCATGCCATATT+TGG | + | chr8_2:10559678-10559697 | Msa1233670:CDS | 35.0% | |
| ATCTTGTTCTTGCAAGATGA+TGG | + | chr8_2:10559742-10559761 | Msa1233670:CDS | 35.0% | |
| TCTTGTTCTTGCAAGATGAT+GGG | + | chr8_2:10559743-10559762 | Msa1233670:CDS | 35.0% | |
| TTAAGTTTGCCACACTCAAA+TGG | + | chr8_2:10559790-10559809 | Msa1233670:CDS | 35.0% | |
| TAAGTTTGCCACACTCAAAT+GGG | + | chr8_2:10559791-10559810 | Msa1233670:CDS | 35.0% | |
| !! | AAGGTGTCGAAAGTACAATT+TGG | + | chr8_2:10559857-10559876 | Msa1233670:CDS | 35.0% |
| ! | CGAAAGTACAATTTGGATGT+TGG | + | chr8_2:10559864-10559883 | Msa1233670:CDS | 35.0% |
| TACAATTTGGATGTTGGCAA+AGG | + | chr8_2:10559870-10559889 | Msa1233670:CDS | 35.0% | |
| TTTATTGTGTCACGGTAATG+GGG | - | chr8_2:10560201-10560220 | None:intergenic | 35.0% | |
| AACTGCAGAAGAAATCTCAA+TGG | - | chr8_2:10560301-10560320 | None:intergenic | 35.0% | |
| CTTCTGCAGTTTACAAGAAT+TGG | + | chr8_2:10560310-10560329 | Msa1233670:CDS | 35.0% | |
| ! | ACATTTTATCATTAGAGGGG+GGG | - | chr8_2:10560449-10560468 | None:intergenic | 35.0% |
| ! | CACATTTTATCATTAGAGGG+GGG | - | chr8_2:10560450-10560469 | None:intergenic | 35.0% |
| AAATTGTTTGTCTGATCCAG+AGG | + | chr8_2:10560573-10560592 | Msa1233670:intron | 35.0% | |
| !! | CAGTTGATGGACTAGAAATA+TGG | + | chr8_2:10560661-10560680 | Msa1233670:CDS | 35.0% |
| AGTATAAGGAGACATAGTCT+TGG | - | chr8_2:10560707-10560726 | None:intergenic | 35.0% | |
| TCTTGAACAGTTTGCATCTT+TGG | - | chr8_2:10560831-10560850 | None:intergenic | 35.0% | |
| CGAAGCAGTCCATATAATAA+TGG | - | chr8_2:10560871-10560890 | None:intergenic | 35.0% | |
| AACTTCGGACAATATCCTTA+CGG | + | chr8_2:10560909-10560928 | Msa1233670:CDS | 35.0% | |
| TTTACCATCTCATCGTATTC+CGG | - | chr8_2:10560993-10561012 | None:intergenic | 35.0% | |
| GATGGTAAAAAGTCCTCAAA+AGG | + | chr8_2:10561004-10561023 | Msa1233670:CDS | 35.0% | |
| ! | GTTCTCAAATATGCCTTTTG+AGG | - | chr8_2:10561020-10561039 | None:intergenic | 35.0% |
| CAATCACAGAAAGATCAACA+AGG | - | chr8_2:10561064-10561083 | None:intergenic | 35.0% | |
| TTGAAGGGAAAATTACCAAG+AGG | + | chr8_2:10561204-10561223 | Msa1233670:CDS | 35.0% | |
| GAAGAAGGTTTAACATTCAG+AGG | + | chr8_2:10561299-10561318 | Msa1233670:CDS | 35.0% | |
| TACAACATCACTGCTGTATT+TGG | + | chr8_2:10561461-10561480 | Msa1233670:three_prime_UTR | 35.0% | |
| ACAACATCACTGCTGTATTT+GGG | + | chr8_2:10561462-10561481 | Msa1233670:three_prime_UTR | 35.0% | |
| !! | TTGAGGTGGTGGAAACTTAA+GGG | - | chr8_2:10559016-10559035 | None:intergenic | 40.0% |
| GTACCTCTAATTACTTGAGG+TGG | - | chr8_2:10559030-10559049 | None:intergenic | 40.0% | |
| !! | GCATCTAATGTGCTTTTTGG+TGG | - | chr8_2:10559447-10559466 | None:intergenic | 40.0% |
| ! | GTGGCATCTAATGTGCTTTT+TGG | - | chr8_2:10559450-10559469 | None:intergenic | 40.0% |
| ACATTAGATGCCACTGTCTA+TGG | + | chr8_2:10559456-10559475 | Msa1233670:CDS | 40.0% | |
| !! | GTTTTGATCACCATAGACAG+TGG | - | chr8_2:10559469-10559488 | None:intergenic | 40.0% |
| TGGTGATATCACAGTAGAAG+AGG | + | chr8_2:10559524-10559543 | Msa1233670:CDS | 40.0% | |
| TTTGTGGAACAGGCACTTAA+TGG | + | chr8_2:10559628-10559647 | Msa1233670:intron | 40.0% | |
| CATTCATGCCATATTTGGAG+AGG | + | chr8_2:10559683-10559702 | Msa1233670:CDS | 40.0% | |
| GTGTGGCAAACTTAATTCGA+TGG | - | chr8_2:10559785-10559804 | None:intergenic | 40.0% | |
| AAGTTTGCCACACTCAAATG+GGG | + | chr8_2:10559792-10559811 | Msa1233670:CDS | 40.0% | |
| CTTTGCTTTCAGCACCATAT+TGG | - | chr8_2:10559819-10559838 | None:intergenic | 40.0% | |
| ATCATCAACTCATGAGCCAT+TGG | + | chr8_2:10559920-10559939 | Msa1233670:CDS | 40.0% | |
| TCGTGGCATACATTATCTCT+TGG | - | chr8_2:10560060-10560079 | None:intergenic | 40.0% | |
| GTTGAATACTCATGCAGTGA+TGG | + | chr8_2:10560110-10560129 | Msa1233670:CDS | 40.0% | |
| ! | TTATTGTGTCACGGTAATGG+GGG | - | chr8_2:10560200-10560219 | None:intergenic | 40.0% |
| ATCTCAATGGAATTTGGTCC+AGG | - | chr8_2:10560288-10560307 | None:intergenic | 40.0% | |
| TACCAGCTGATCTTATCAAG+AGG | + | chr8_2:10560352-10560371 | Msa1233670:CDS | 40.0% | |
| TACCTCTTGATAAGATCAGC+TGG | - | chr8_2:10560357-10560376 | None:intergenic | 40.0% | |
| TATGTTCTCATGAGTCTTGG+TGG | - | chr8_2:10560385-10560404 | None:intergenic | 40.0% | |
| ! | ATTTTATCATTAGAGGGGGG+GGG | - | chr8_2:10560447-10560466 | None:intergenic | 40.0% |
| ! | CATTTTATCATTAGAGGGGG+GGG | - | chr8_2:10560448-10560467 | None:intergenic | 40.0% |
| CTAGTCCATCAACTGCATAA+GGG | - | chr8_2:10560656-10560675 | None:intergenic | 40.0% | |
| TCTAGTCCATCAACTGCATA+AGG | - | chr8_2:10560657-10560676 | None:intergenic | 40.0% | |
| TATGGGATGCTATTAAGGCA+TGG | + | chr8_2:10560679-10560698 | Msa1233670:CDS | 40.0% | |
| ATGGGATGCTATTAAGGCAT+GGG | + | chr8_2:10560680-10560699 | Msa1233670:CDS | 40.0% | |
| TGGAAGGAAGCTGTAGAAAA+GGG | + | chr8_2:10560774-10560793 | Msa1233670:CDS | 40.0% | |
| GATGCAAACTGTTCAAGACT+TGG | + | chr8_2:10560833-10560852 | Msa1233670:CDS | 40.0% | |
| CTTCATGCAGCTGTTAACTT+CGG | + | chr8_2:10560894-10560913 | Msa1233670:CDS | 40.0% | |
| TTCAGGATATATCCTCCGTA+AGG | - | chr8_2:10560927-10560946 | None:intergenic | 40.0% | |
| TACTAATTGTTGGACGGTTC+AGG | - | chr8_2:10560944-10560963 | None:intergenic | 40.0% | |
| ! | TCAACAAGGGTTTGGTACTT+TGG | - | chr8_2:10561050-10561069 | None:intergenic | 40.0% |
| CAGAAAGATCAACAAGGGTT+TGG | - | chr8_2:10561058-10561077 | None:intergenic | 40.0% | |
| CTCTCCAAGATACACTTCAT+CGG | - | chr8_2:10561108-10561127 | None:intergenic | 40.0% | |
| !!! | AGTTTTGGACATCTGATGCA+AGG | + | chr8_2:10561138-10561157 | Msa1233670:CDS | 40.0% |
| !! | GTTTTGGACATCTGATGCAA+GGG | + | chr8_2:10561139-10561158 | Msa1233670:CDS | 40.0% |
| TTTGCTTCCAAACTTTCGGA+AGG | - | chr8_2:10561174-10561193 | None:intergenic | 40.0% | |
| ACTAGACTCATTGTTCCTCT+TGG | - | chr8_2:10561222-10561241 | None:intergenic | 40.0% | |
| AAAGTGTATGGCAATTGCAC+TGG | - | chr8_2:10561263-10561282 | None:intergenic | 40.0% | |
| AACCTTCTTCACTTGAACGA+AGG | - | chr8_2:10561289-10561308 | None:intergenic | 40.0% | |
| TACATGGTGCAAAGCAATAG+TGG | - | chr8_2:10561524-10561543 | None:intergenic | 40.0% | |
| ! | ATTTCCTTAAGGGCTGGCAA+GGG | - | chr8_2:10558970-10558989 | None:intergenic | 45.0% |
| TGTGCGGAGGATTTCCTTAA+GGG | - | chr8_2:10558980-10558999 | None:intergenic | 45.0% | |
| !! | CTTGAGGTGGTGGAAACTTA+AGG | - | chr8_2:10559017-10559036 | None:intergenic | 45.0% |
| CCTCTAATTACTTGAGGTGG+TGG | - | chr8_2:10559027-10559046 | None:intergenic | 45.0% | |
| CCACCACCTCAAGTAATTAG+AGG | + | chr8_2:10559024-10559043 | Msa1233670:CDS | 45.0% | |
| GTGTAGTTAGCAAGTCTGCA+TGG | + | chr8_2:10559245-10559264 | Msa1233670:intron | 45.0% | |
| TTTGGAAGAGAGATGCTTGC+TGG | + | chr8_2:10559283-10559302 | Msa1233670:CDS | 45.0% | |
| GTGCAAAAGCTTACGCTACA+AGG | + | chr8_2:10559716-10559735 | Msa1233670:CDS | 45.0% | |
| TATTGGACCCCATTTGAGTG+TGG | - | chr8_2:10559802-10559821 | None:intergenic | 45.0% | |
| CACTCAAATGGGGTCCAATA+TGG | + | chr8_2:10559802-10559821 | Msa1233670:CDS | 45.0% | |
| ! | ACTATATCTGCATCGGCCAA+GGG | - | chr8_2:10560007-10560026 | None:intergenic | 45.0% |
| ! | AACTATATCTGCATCGGCCA+AGG | - | chr8_2:10560008-10560027 | None:intergenic | 45.0% |
| CATTATCTCTTGGCCAATGC+AGG | - | chr8_2:10560050-10560069 | None:intergenic | 45.0% | |
| ! | CGACAAGCTCTAATCAATGC+TGG | + | chr8_2:10560237-10560256 | Msa1233670:CDS | 45.0% |
| ! | CAAGCTCTAATCAATGCTGG+CGG | + | chr8_2:10560240-10560259 | Msa1233670:CDS | 45.0% |
| ! | TTTTATCATTAGAGGGGGGG+GGG | - | chr8_2:10560446-10560465 | None:intergenic | 45.0% |
| !! | ATCCAGAGGATTAGCTGTTG+AGG | + | chr8_2:10560587-10560606 | Msa1233670:intron | 45.0% |
| ATCCTCAACAGCTAATCCTC+TGG | - | chr8_2:10560592-10560611 | None:intergenic | 45.0% | |
| AGTCCTCTATCACAAGACGA+AGG | - | chr8_2:10560632-10560651 | None:intergenic | 45.0% | |
| GACTACCCTTATGCAGTTGA+TGG | + | chr8_2:10560648-10560667 | Msa1233670:CDS | 45.0% | |
| CTCGTCTGTTGGGTAGTATA+AGG | - | chr8_2:10560721-10560740 | None:intergenic | 45.0% | |
| CTTATACTACCCAACAGACG+AGG | + | chr8_2:10560719-10560738 | Msa1233670:CDS | 45.0% | |
| GTGGAAGGAAGCTGTAGAAA+AGG | + | chr8_2:10560773-10560792 | Msa1233670:CDS | 45.0% | |
| GAAGCTGTAGAAAAGGGTCA+TGG | + | chr8_2:10560780-10560799 | Msa1233670:CDS | 45.0% | |
| GTGACTTGAAAGACAAGCCA+TGG | + | chr8_2:10560802-10560821 | Msa1233670:CDS | 45.0% | |
| ACTTGAAAGACAAGCCATGG+TGG | + | chr8_2:10560805-10560824 | Msa1233670:CDS | 45.0% | |
| TTCGGACAATATCCTTACGG+AGG | + | chr8_2:10560912-10560931 | Msa1233670:CDS | 45.0% | |
| AGAAGATTTATTCCGGAGCC+AGG | + | chr8_2:10560963-10560982 | Msa1233670:CDS | 45.0% | |
| AACACCGGAATACGATGAGA+TGG | + | chr8_2:10560986-10561005 | Msa1233670:CDS | 45.0% | |
| GTTCAAGCCTTCCGAAAGTT+TGG | + | chr8_2:10561164-10561183 | Msa1233670:CDS | 45.0% | |
| ! | TCTAGTTTGAGAAACCGCAC+CGG | + | chr8_2:10561236-10561255 | Msa1233670:CDS | 45.0% |
| GAACGAAGGAGCAAAGTGTA+TGG | - | chr8_2:10561275-10561294 | None:intergenic | 45.0% | |
| CTCCTTCGTTCAAGTGAAGA+AGG | + | chr8_2:10561284-10561303 | Msa1233670:CDS | 45.0% | |
| ! | TTTCCTTAAGGGCTGGCAAG+GGG | - | chr8_2:10558969-10558988 | None:intergenic | 50.0% |
| ! | GATTTCCTTAAGGGCTGGCA+AGG | - | chr8_2:10558971-10558990 | None:intergenic | 50.0% |
| CTGTGCGGAGGATTTCCTTA+AGG | - | chr8_2:10558981-10559000 | None:intergenic | 50.0% | |
| AAGGAAATCCTCCGCACAGA+TGG | + | chr8_2:10558982-10559001 | Msa1233670:CDS | 50.0% | |
| GTATTCTTGCCTGCACACGA+AGG | + | chr8_2:10559838-10559857 | Msa1233670:CDS | 50.0% | |
| TTTATCATTAGAGGGGGGGG+GGG | - | chr8_2:10560445-10560464 | None:intergenic | 50.0% | |
| TCACAAGACGAAGGCCATGA+GGG | - | chr8_2:10560623-10560642 | None:intergenic | 50.0% | |
| ATCACAAGACGAAGGCCATG+AGG | - | chr8_2:10560624-10560643 | None:intergenic | 50.0% | |
| TGGCCTTCGTCTTGTGATAG+AGG | + | chr8_2:10560626-10560645 | Msa1233670:CDS | 50.0% | |
| TTTGCACTGCCTCGTCTGTT+GGG | - | chr8_2:10560731-10560750 | None:intergenic | 50.0% | |
| ATTTGCACTGCCTCGTCTGT+TGG | - | chr8_2:10560732-10560751 | None:intergenic | 50.0% | |
| GTTTGCATCTTTGGCCACCA+TGG | - | chr8_2:10560822-10560841 | None:intergenic | 50.0% | |
| TCATCGTATTCCGGTGTTCC+TGG | - | chr8_2:10560984-10561003 | None:intergenic | 50.0% | |
| GCGTCCGATGAAGTGTATCT+TGG | + | chr8_2:10561101-10561120 | Msa1233670:CDS | 50.0% | |
| ! | GTATGGCAATTGCACTGGTC+CGG | - | chr8_2:10561258-10561277 | None:intergenic | 50.0% |
| CGGAGGATTTCCTTAAGGGC+TGG | - | chr8_2:10558976-10558995 | None:intergenic | 55.0% | |
| CTTGTTCACCATCTGTGCGG+AGG | - | chr8_2:10558993-10559012 | None:intergenic | 55.0% | |
| ! | GGGCTTGTTCACCATCTGTG+CGG | - | chr8_2:10558996-10559015 | None:intergenic | 55.0% |
| CTTTCGACACCTTCGTGTGC+AGG | - | chr8_2:10559850-10559869 | None:intergenic | 55.0% | |
| TCTGCATGCTACGCCTGCAT+TGG | + | chr8_2:10560034-10560053 | Msa1233670:intron | 55.0% | |
| TTATCATTAGAGGGGGGGGG+GGG | - | chr8_2:10560444-10560463 | None:intergenic | 55.0% | |
| GAGGATCCATCTTCCCCTCA+TGG | + | chr8_2:10560606-10560625 | Msa1233670:CDS | 55.0% | |
| CACAAGACGAAGGCCATGAG+GGG | - | chr8_2:10560622-10560641 | None:intergenic | 55.0% | |
| TATTCCGGAGCCAGGAACAC+CGG | + | chr8_2:10560971-10560990 | Msa1233670:CDS | 55.0% | |
| TATTCCGGTGTTCCTGGCTC+CGG | - | chr8_2:10560978-10560997 | None:intergenic | 55.0% | |
| ! | GGGCTGGCAAGGGGCTAATT+TGG | - | chr8_2:10558960-10558979 | None:intergenic | 60.0% |
| TAGCCCCTTGCCAGCCCTTA+AGG | + | chr8_2:10558963-10558982 | Msa1233670:CDS | 60.0% | |
| TATCATTAGAGGGGGGGGGG+GGG | - | chr8_2:10560443-10560462 | None:intergenic | 60.0% | |
| CGAAGGCCATGAGGGGAAGA+TGG | - | chr8_2:10560615-10560634 | None:intergenic | 60.0% | |
| ! | GCAATTGCACTGGTCCGGTG+CGG | - | chr8_2:10561253-10561272 | None:intergenic | 60.0% |
| ATCATTAGAGGGGGGGGGGG+GGG | - | chr8_2:10560442-10560461 | None:intergenic | 65.0% | |
| TCATTAGAGGGGGGGGGGGG+GGG | - | chr8_2:10560441-10560460 | None:intergenic | 70.0% | |
| ATTAGAGGGGGGGGGGGGGG+GGG | - | chr8_2:10560439-10560458 | None:intergenic | 75.0% | |
| CATTAGAGGGGGGGGGGGGG+GGG | - | chr8_2:10560440-10560459 | None:intergenic | 75.0% | |
| ! | TTAGAGGGGGGGGGGGGGGG+GGG | - | chr8_2:10560438-10560457 | None:intergenic | 80.0% |
| ! | TAGAGGGGGGGGGGGGGGGG+GGG | - | chr8_2:10560437-10560456 | None:intergenic | 85.0% |
| ! | AGAGGGGGGGGGGGGGGGGG+GGG | - | chr8_2:10560436-10560455 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 10558937 | 10561625 | 10558937 | ID=Msa1233670;Name=Msa1233670 |
| chr8_2 | mRNA | 10558937 | 10561625 | 10558937 | ID=Msa1233670-mRNA-1;Parent=Msa1233670;Name=Msa1233670-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|1|1|1|1|6|279|540 |
| chr8_2 | exon | 10558937 | 10559045 | 10558937 | ID=Msa1233670-mRNA-1:exon:4111;Parent=Msa1233670-mRNA-1 |
| chr8_2 | exon | 10559251 | 10559336 | 10559251 | ID=Msa1233670-mRNA-1:exon:4112;Parent=Msa1233670-mRNA-1 |
| chr8_2 | exon | 10559438 | 10559545 | 10559438 | ID=Msa1233670-mRNA-1:exon:4113;Parent=Msa1233670-mRNA-1 |
| chr8_2 | exon | 10559640 | 10559941 | 10559640 | ID=Msa1233670-mRNA-1:exon:4114;Parent=Msa1233670-mRNA-1 |
| chr8_2 | exon | 10560110 | 10560373 | 10560110 | ID=Msa1233670-mRNA-1:exon:4115;Parent=Msa1233670-mRNA-1 |
| chr8_2 | exon | 10560593 | 10561625 | 10560593 | ID=Msa1233670-mRNA-1:exon:4116;Parent=Msa1233670-mRNA-1 |
| chr8_2 | CDS | 10558937 | 10559045 | 10558937 | ID=Msa1233670-mRNA-1:cds;Parent=Msa1233670-mRNA-1 |
| chr8_2 | CDS | 10559251 | 10559336 | 10559251 | ID=Msa1233670-mRNA-1:cds;Parent=Msa1233670-mRNA-1 |
| chr8_2 | CDS | 10559438 | 10559545 | 10559438 | ID=Msa1233670-mRNA-1:cds;Parent=Msa1233670-mRNA-1 |
| chr8_2 | CDS | 10559640 | 10559941 | 10559640 | ID=Msa1233670-mRNA-1:cds;Parent=Msa1233670-mRNA-1 |
| chr8_2 | CDS | 10560110 | 10560373 | 10560110 | ID=Msa1233670-mRNA-1:cds;Parent=Msa1233670-mRNA-1 |
| chr8_2 | CDS | 10560593 | 10561346 | 10560593 | ID=Msa1233670-mRNA-1:cds;Parent=Msa1233670-mRNA-1 |
| chr8_2 | three_prime_UTR | 10561347 | 10561625 | 10561347 | ID=Msa1233670-mRNA-1:three_prime_utr;Parent=Msa1233670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
