AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1179140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179140 MtrunA17_Chr8g0343021 98.727 864 11 0 1 864 1 864 0.0 1762
Msa1179140 MtrunA17_Chr8g0343031 91.214 865 75 1 1 864 1 865 0.0 1622
Msa1179140 MtrunA17_Chr5g0406871 83.737 867 138 2 1 864 1 867 0.0 1528
Msa1179140 MtrunA17_Chr2g0329901 73.241 867 217 6 3 864 7 863 0.0 1312
Msa1179140 MtrunA17_Chr2g0329911 71.296 864 237 3 3 864 7 861 0.0 1289
Msa1179140 MtrunA17_Chr8g0342881 69.464 858 249 5 10 864 9 856 0.0 1255
Msa1179140 MtrunA17_Chr3g0120071 67.396 868 269 7 1 864 1 858 0.0 1196
Msa1179140 MtrunA17_Chr8g0342951 65.783 868 285 7 3 864 7 868 0.0 1175
Msa1179140 MtrunA17_Chr8g0342971 64.401 868 299 8 3 864 7 870 0.0 1174
Msa1179140 MtrunA17_Chr8g0344211 63.121 865 313 5 3 864 7 868 0.0 1154
Msa1179140 MtrunA17_Chr8g0342921 63.815 865 306 6 4 864 8 869 0.0 1152
Msa1179140 MtrunA17_Chr8g0342891 62.587 866 308 6 5 864 6 861 0.0 1152
Msa1179140 MtrunA17_Chr8g0343011 63.668 867 306 4 1 864 5 865 0.0 1148
Msa1179140 MtrunA17_Chr8g0342931 65.113 751 258 4 117 864 1 750 0.0 1043
Msa1179140 MtrunA17_Chr8g0342901 58.113 869 309 10 5 864 6 828 0.0 1032
Msa1179140 MtrunA17_Chr1g0191921 58.180 868 325 8 9 864 17 858 0.0 1013
Msa1179140 MtrunA17_Chr1g0205611 56.586 873 335 10 11 864 9 856 0.0 995
Msa1179140 MtrunA17_Chr7g0272791 56.158 885 342 11 1 864 8 867 0.0 995
Msa1179140 MtrunA17_Chr8g0343001 55.349 860 318 12 10 864 9 807 0.0 940
Msa1179140 MtrunA17_Chr8g0342991 55.220 862 316 14 10 864 9 807 0.0 929
Msa1179140 MtrunA17_Chr8g0342981 54.446 821 323 13 63 864 35 823 0.0 875
Msa1179140 MtrunA17_Chr8g0344201 47.080 822 414 11 55 863 113 926 0.0 742
Msa1179140 MtrunA17_Chr8g0377101 44.311 835 435 15 49 864 93 916 0.0 688
Msa1179140 MtrunA17_Chr3g0118651 42.635 835 443 14 45 864 90 903 0.0 669
Msa1179140 MtrunA17_Chr8g0338451 42.387 821 426 18 54 845 46 848 0.0 647
Msa1179140 MtrunA17_Chr3g0118641 41.219 837 452 14 45 864 89 902 0.0 645
Msa1179140 MtrunA17_Chr4g0033171 47.532 709 356 10 166 864 23 725 0.0 640
Msa1179140 MtrunA17_Chr4g0047281 40.114 875 469 16 7 863 57 894 0.0 632
Msa1179140 MtrunA17_Chr3g0118621 41.417 833 463 13 45 864 45 865 0.0 609
Msa1179140 MtrunA17_Chr8g0344241 65.063 395 137 1 471 864 67 461 0.0 550
Msa1179140 MtrunA17_Chr8g0344241 46.914 81 36 3 281 357 1 78 1.26e-11 67.8
Msa1179140 MtrunA17_Chr6g0471951 41.279 516 255 8 320 829 11 484 2.23e-135 412
Msa1179140 MtrunA17_Chr7g0218231 59.829 117 46 1 519 634 16 132 8.02e-41 146
Msa1179140 MtrunA17_Chr6g0468081 56.180 89 38 1 547 634 1 89 1.93e-25 101
Msa1179140 MtrunA17_Chr3g0137991 40.476 126 56 3 741 864 1 109 4.41e-19 83.6
Msa1179140 MtrunA17_Chr7g0272781 51.613 62 30 0 757 818 8 69 9.82e-16 73.6
Msa1179140 MtrunA17_Chr2g0277191 50.909 55 27 0 738 792 58 112 1.28e-14 71.2
Msa1179140 MtrunA17_Chr4g0047271 40.659 91 53 1 774 863 1 91 3.31e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179140 AT1G55020.1 56.667 870 334 10 9 864 19 859 0.0 1001
Msa1179140 AT3G22400.1 53.075 878 364 10 10 864 34 886 0.0 954
Msa1179140 AT1G72520.1 45.985 822 423 11 55 864 114 926 0.0 725
Msa1179140 AT1G17420.1 46.078 816 416 13 62 864 115 919 0.0 720
Msa1179140 AT3G45140.1 44.197 853 434 19 28 864 70 896 0.0 679
Msa1179140 AT3G45140.2 46.536 765 379 15 116 864 4 754 0.0 665
Msa1179140 AT1G67560.1 43.961 828 418 16 62 864 111 917 0.0 652

Find 232 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAACATCACTGCTGTATT+TGG 0.113928 8_1:+12345167 Msa1179140:three_prime_UTR
TGATGCATTCATGCCATATT+TGG 0.131415 8_1:+12343379 Msa1179140:CDS
AATCATCACATTGATGTTAT+TGG 0.174734 8_1:-12345100 None:intergenic
TCTTGAACAGTTTGCATCTT+TGG 0.184786 8_1:-12344534 None:intergenic
TCTTCTCTAAAGTGATTTAA+TGG 0.196129 8_1:-12342118 None:intergenic
TATATAAAGATTCATTTAAT+TGG 0.196169 8_1:+12345319 Msa1179140:three_prime_UTR
GGGCTGGCAAGGGGCTAATT+TGG 0.203250 8_1:-12342658 None:intergenic
CTTCTGCAGTTTACAAGAAT+TGG 0.212735 8_1:+12344011 Msa1179140:CDS
GGGAATAAAAGCTTATAAAT+TGG 0.214154 8_1:-12343878 None:intergenic
GTTCCAAGAGATGAAAATTT+TGG 0.231662 8_1:+12342458 Msa1179140:CDS
AATCTTGCTCCATTATTATA+TGG 0.238471 8_1:+12344565 Msa1179140:CDS
AAATTTATCCTCTCCAAATA+TGG 0.251076 8_1:-12343392 None:intergenic
AAGCTGAGTTCTTCCTTGTT+AGG 0.258006 8_1:+12341832 Msa1179140:CDS
TGGAATACTGATGAAGAATT+TGG 0.277138 8_1:+12342966 Msa1179140:CDS
GAAGAAATCTCAATGGAATT+TGG 0.280136 8_1:-12343992 None:intergenic
GAGAGAATAATAACAAGTTT+TGG 0.287246 8_1:+12344829 Msa1179140:CDS
AGAAATATGGGATGCTATTA+AGG 0.290191 8_1:+12344380 Msa1179140:CDS
CAGTTGATGGACTAGAAATA+TGG 0.290720 8_1:+12344367 Msa1179140:CDS
TACTAATTGTTGGACGGTTC+AGG 0.290734 8_1:-12344647 None:intergenic
TTTGTGGAACAGGCACTTAA+TGG 0.292803 8_1:+12343329 Msa1179140:intron
ATTTATTGTGTCACGGTAAT+GGG 0.293937 8_1:-12343900 None:intergenic
GACTCCTCCGATCAAATTTC+CGG 0.296832 8_1:-12339833 None:intergenic
ATAGTTTGCTTCCAAACTTT+TGG 0.298940 8_1:-12344881 None:intergenic
TCATCGTATTCCGGTGTTCC+TGG 0.300828 8_1:-12344687 None:intergenic
ACATTAGATGCCACTGTCTA+TGG 0.313484 8_1:+12343157 Msa1179140:CDS
CTTTGCTTTCAGCACCATAT+TGG 0.318853 8_1:-12343517 None:intergenic
CGAAGCTATCGAACTCGTTC+GGG 0.320706 8_1:-12342580 None:intergenic
GTTCAAGCCTTCCAAAAGTT+TGG 0.333897 8_1:+12344870 Msa1179140:CDS
GATACTGCCACTGCCTTCTT+AGG 0.334563 8_1:+12339880 Msa1179140:CDS
TAGCCCCTTGCCAGCCCTTA+AGG 0.335485 8_1:+12342664 Msa1179140:CDS
ATAACATCAATGTGATGATT+AGG 0.336707 8_1:+12345103 Msa1179140:three_prime_UTR
CTTGAGGTGGTGGAAACTTA+AGG 0.348578 8_1:-12342715 None:intergenic
TTTGAATATGATGCTAACTT+TGG 0.350435 8_1:+12341774 Msa1179140:CDS
AAACTTAATTCGATGGCTAA+TGG 0.354943 8_1:-12343476 None:intergenic
TTTACCATCTCATCGTATTC+CGG 0.356702 8_1:-12344696 None:intergenic
CTTCCTCAGTTACCAACTTT+GGG 0.357245 8_1:+12341723 Msa1179140:CDS
ATTTGCACTGCCTCGTCTGT+TGG 0.361300 8_1:-12344435 None:intergenic
CACTCAAATGGGGTCCAATA+TGG 0.361963 8_1:+12343503 Msa1179140:CDS
AAATTCAAAGCTTACATCAT+TGG 0.363405 8_1:-12341955 None:intergenic
CTGTGCGGAGGATTTCCTTA+AGG 0.365223 8_1:-12342679 None:intergenic
ACACCCGGTTTCTCACTCTT+AGG 0.374698 8_1:-12342428 None:intergenic
CCACCACCTCAAGTAATTAG+AGG 0.377836 8_1:+12342725 Msa1179140:CDS
TCTTCCTCAGTTACCAACTT+TGG 0.377861 8_1:+12341722 Msa1179140:CDS
TATTTATTGTGTCACGGTAA+TGG 0.387187 8_1:-12343901 None:intergenic
TTGAGGTGGTGGAAACTTAA+GGG 0.387785 8_1:-12342714 None:intergenic
TGTGCGGAGGATTTCCTTAA+GGG 0.389865 8_1:-12342678 None:intergenic
TCATCAGATTTCCTTATGTA+TGG 0.390738 8_1:+12342491 Msa1179140:CDS
GGAATAAAAGCTTATAAATT+GGG 0.391404 8_1:-12343877 None:intergenic
TGAAGAAGACGAATCACATT+AGG 0.393551 8_1:-12343014 None:intergenic
TAAGTTTGCCACACTCAAAT+GGG 0.403015 8_1:+12343492 Msa1179140:CDS
TCTAGTCCATCAACTGCATA+AGG 0.403122 8_1:-12344360 None:intergenic
GCCCTTGTTCGTCCAATCCT+TGG 0.403862 8_1:+12342247 Msa1179140:CDS
TCAACAAGGGTTTGGTACTT+TGG 0.409673 8_1:-12344753 None:intergenic
TTCAATTTGATTGTAACTCA+TGG 0.409858 8_1:+12341889 Msa1179140:CDS
TTTCTTATGTAAAATGCTCC+TGG 0.411165 8_1:-12341801 None:intergenic
AGCTGAGTTCTTCCTTGTTA+GGG 0.413231 8_1:+12341833 Msa1179140:CDS
CTCCTTCGTTCAAGTGAAGA+AGG 0.413433 8_1:+12344990 Msa1179140:CDS
ATAAATCTTCTACTAATTGT+TGG 0.413529 8_1:-12344657 None:intergenic
TTCTGCAGTTTACAAGAATT+GGG 0.413547 8_1:+12344012 Msa1179140:CDS
ATCTTGTTCTTGCAAGATGA+TGG 0.413720 8_1:+12343443 Msa1179140:CDS
GCCTTTACCGATGGACGTTA+TGG 0.415758 8_1:-12339794 None:intergenic
ACAAGGGCGTCGCCACCATC+TGG 0.423013 8_1:-12342232 None:intergenic
CTATTTGTTGCTATGATGAA+TGG 0.428310 8_1:-12343836 None:intergenic
ACAACATCACTGCTGTATTT+GGG 0.428770 8_1:+12345168 Msa1179140:three_prime_UTR
ATGACTTTATTCCATACATA+AGG 0.429212 8_1:-12342502 None:intergenic
TCGAAGCTATCGAACTCGTT+CGG 0.431615 8_1:-12342581 None:intergenic
TTTGCACTGCCTCGTCTGTT+GGG 0.433619 8_1:-12344434 None:intergenic
AGCAAACTATCTGAAATTGA+AGG 0.433677 8_1:+12344894 Msa1179140:CDS
AGATCCTAAGAGTGAGAAAC+CGG 0.434252 8_1:+12342424 Msa1179140:intron
TTAAGTTTGCCACACTCAAA+TGG 0.434747 8_1:+12343491 Msa1179140:CDS
CACGGTTAGGAATATCTTCA+AGG 0.435842 8_1:-12341860 None:intergenic
CTCGTCTGTTGGGTAGTATA+AGG 0.436885 8_1:-12344424 None:intergenic
AATTGAACACTTCCACGGTT+AGG 0.444733 8_1:-12341873 None:intergenic
GCAAGTGGAAAAGGAATAGT+TGG 0.448151 8_1:+12341675 Msa1179140:intron
TACATGGTGCAAAGCAATAG+TGG 0.452805 8_1:-12345227 None:intergenic
CGAAGGCCATGAGGGGAAGA+TGG 0.454773 8_1:-12344318 None:intergenic
GACTACCCTTATGCAGTTGA+TGG 0.458971 8_1:+12344354 Msa1179140:CDS
CATTATTATATGGACTGCTT+CGG 0.459516 8_1:+12344575 Msa1179140:CDS
CACTTTACTATATGTGAAAG+TGG 0.463123 8_1:-12345252 None:intergenic
CTTCTAACCCTACGAGGGTA+TGG 0.464031 8_1:-12342286 None:intergenic
TCAACTGCATAGAGACATTA+CGG 0.464666 8_1:-12339903 None:intergenic
CGAAGCAGTCCATATAATAA+TGG 0.464772 8_1:-12344574 None:intergenic
GGAGGAGTCACCAGCATTGT+TGG 0.465982 8_1:+12339847 Msa1179140:CDS
AAGGTGTCGAAAGTACAATT+TGG 0.471544 8_1:+12343558 Msa1179140:CDS
AATTAGTAGAAGATTTATTC+CGG 0.472215 8_1:+12344662 Msa1179140:CDS
CAGAAAGATCAACAAGGGTT+TGG 0.472356 8_1:-12344761 None:intergenic
GTGGAAGGAAGCTGTAGAAA+AGG 0.472990 8_1:+12344479 Msa1179140:CDS
GATTTCCTTAAGGGCTGGCA+AGG 0.476480 8_1:-12342669 None:intergenic
ATCTCAATGGAATTTGGTCC+AGG 0.477443 8_1:-12343986 None:intergenic
TCTTGTCTTGCTCCCAAAGT+TGG 0.477942 8_1:-12341735 None:intergenic
GGTAGAAAACCAACTAGAAA+AGG 0.479857 8_1:+12342310 Msa1179140:CDS
TTTGGAAGAGAGATGCTTGC+TGG 0.480541 8_1:+12342984 Msa1179140:CDS
TTCTTATGTAAAATGCTCCT+GGG 0.480564 8_1:-12341800 None:intergenic
CTTTCGACACCTTCGTGTGC+AGG 0.481903 8_1:-12343548 None:intergenic
ACTAGACTCATTGTTCCTCT+TGG 0.485140 8_1:-12344925 None:intergenic
GAACACTTAGAGACTAATCT+TGG 0.485357 8_1:+12343205 Msa1179140:CDS
CGAAAGTACAATTTGGATGT+TGG 0.485918 8_1:+12343565 Msa1179140:CDS
AATCTAAGAGGAGATGGAAC+TGG 0.486945 8_1:+12342151 Msa1179140:CDS
TTGCAGAATCTAAGAGGAGA+TGG 0.488557 8_1:+12342145 Msa1179140:CDS
AACTGGAGAACGCAAAGAAT+GGG 0.488937 8_1:+12342168 Msa1179140:CDS
GGCGGTGTCCTCGACGCTGC+CGG 0.489241 8_1:+12339814 Msa1179140:CDS
CTAAAGTGATTTAATGGAGC+CGG 0.489595 8_1:-12342112 None:intergenic
GAACTGGAGAACGCAAAGAA+TGG 0.490615 8_1:+12342167 Msa1179140:CDS
TATGATGTTTATAATGATCT+CGG 0.490765 8_1:+12342205 Msa1179140:CDS
CGGAGGATTTCCTTAAGGGC+TGG 0.491033 8_1:-12342674 None:intergenic
GTTGAGTAGAGAAAGAAGCT+TGG 0.493562 8_1:-12339642 None:intergenic
TATTAAATAGAGATACTGTT+GGG 0.494456 8_1:-12345032 None:intergenic
TGGCCTTCGTCTTGTGATAG+AGG 0.494640 8_1:+12344332 Msa1179140:CDS
CGTGACACAATAAATATCAA+TGG 0.495773 8_1:+12343908 Msa1179140:CDS
GCGTCCGATGAAGTGTATCT+TGG 0.497267 8_1:+12344807 Msa1179140:CDS
AGAAGATTTATTCCGGAGCC+AGG 0.498580 8_1:+12344669 Msa1179140:CDS
GAAGAGTTGCAGAATCTAAG+AGG 0.504427 8_1:+12342139 Msa1179140:CDS
GAGGATCCATCTTCCCCTCA+TGG 0.504857 8_1:+12344312 Msa1179140:CDS
TCAATTTGATTGTAACTCAT+GGG 0.505064 8_1:+12341890 Msa1179140:CDS
TACCTCTTGATAAGATCAGC+TGG 0.505206 8_1:-12344055 None:intergenic
AAAGAGTTAGCAAACATGTT+GGG 0.505875 8_1:+12339700 Msa1179140:exon
CTATTAAATAGAGATACTGT+TGG 0.508266 8_1:-12345033 None:intergenic
CGACAAGCTCTAATCAATGC+TGG 0.510064 8_1:+12343938 Msa1179140:CDS
AACTTCGGACAATATCCTTA+CGG 0.512858 8_1:+12344615 Msa1179140:CDS
ATCATCAACTCATGAGCCAT+TGG 0.514587 8_1:+12343621 Msa1179140:CDS
AACCTTCTTCACTTGAACGA+AGG 0.515488 8_1:-12344992 None:intergenic
TATTCCGGTGTTCCTGGCTC+CGG 0.516922 8_1:-12344681 None:intergenic
GCCATAACGTCCATCGGTAA+AGG 0.517311 8_1:+12339793 Msa1179140:CDS
GATGCAAACTGTTCAAGACT+TGG 0.520407 8_1:+12344539 Msa1179140:CDS
CTTGTTCGTCCAATCCTTGG+AGG 0.520793 8_1:+12342250 Msa1179140:CDS
GTGCTAGATCCTCCAAGGAT+TGG 0.523237 8_1:-12342259 None:intergenic
CTAGTCCATCAACTGCATAA+GGG 0.524434 8_1:-12344359 None:intergenic
ATTTCCTTAAGGGCTGGCAA+GGG 0.524741 8_1:-12342668 None:intergenic
GAACGAAGGAGCAAAGTGTA+TGG 0.526003 8_1:-12344978 None:intergenic
AACAACTCCACCAACAATGC+TGG 0.526326 8_1:-12339857 None:intergenic
ATCTTCTACTAATTGTTGGA+CGG 0.527713 8_1:-12344653 None:intergenic
TAACCCTACGAGGGTATGGA+TGG 0.527930 8_1:-12342282 None:intergenic
GAAGAAGGTTTAACATTCAG+AGG 0.528130 8_1:+12345005 Msa1179140:CDS
AATCAAATTGAACACTTCCA+CGG 0.532254 8_1:-12341878 None:intergenic
CCTCTAATTACTTGAGGTGG+TGG 0.533059 8_1:-12342725 None:intergenic
CTCCAAGGATTGGACGAACA+AGG 0.536054 8_1:-12342249 None:intergenic
CATTGATATTTATTGTGTCA+CGG 0.537197 8_1:-12343907 None:intergenic
TACAATTTGGATGTTGGCAA+AGG 0.537477 8_1:+12343571 Msa1179140:CDS
AATGGAGCCGGTGTTTGACT+TGG 0.537557 8_1:-12342100 None:intergenic
AACTGCAGAAGAAATCTCAA+TGG 0.538818 8_1:-12343999 None:intergenic
TCTTGTTCTTGCAAGATGAT+GGG 0.539913 8_1:+12343444 Msa1179140:CDS
GTGCAAAAGCTTACGCTACA+AGG 0.541604 8_1:+12343417 Msa1179140:CDS
ATGTTGGGCATCTTTGACAA+GGG 0.541871 8_1:+12339715 Msa1179140:CDS
TGGAATAAAGTCATTGTCAC+AGG 0.544868 8_1:+12342511 Msa1179140:CDS
AGAGACATTACGGCCTAAGA+AGG 0.547564 8_1:-12339893 None:intergenic
ATGCATCATGGTAATCTAAG+AGG 0.548431 8_1:-12343364 None:intergenic
GATGCTAACTTTGGAATCCC+AGG 0.555370 8_1:+12341783 Msa1179140:CDS
AAAAGAGTTAGCAAACATGT+TGG 0.558912 8_1:+12339699 Msa1179140:exon
AAGGAAATCCTCCGCACAGA+TGG 0.559147 8_1:+12342683 Msa1179140:CDS
GTATGGCAATTGCACTGGTC+CGG 0.560938 8_1:-12344961 None:intergenic
AGTTGATGGACTAGAAATAT+GGG 0.561136 8_1:+12344368 Msa1179140:CDS
GTTGAATACTCATGCAGTGA+TGG 0.563079 8_1:+12343811 Msa1179140:CDS
CATGTTGGGCATCTTTGACA+AGG 0.564613 8_1:+12339714 Msa1179140:exon
AAAGTGTATGGCAATTGCAC+TGG 0.566509 8_1:-12344966 None:intergenic
TGGAAAAGGAATAGTTGGAA+AGG 0.567817 8_1:+12341680 Msa1179140:CDS
ATGGGATGCTATTAAGGCAT+GGG 0.568340 8_1:+12344386 Msa1179140:CDS
AAAATTACAGATTGTAACAA+AGG 0.568552 8_1:-12342542 None:intergenic
CTTCAAGGGTCACCCTAACA+AGG 0.570848 8_1:-12341845 None:intergenic
TTTCCTTAAGGGCTGGCAAG+GGG 0.571197 8_1:-12342667 None:intergenic
GAGAACGCAAAGAATGGGAT+AGG 0.576002 8_1:+12342173 Msa1179140:CDS
TGGAAGGAAGCTGTAGAAAA+GGG 0.576005 8_1:+12344480 Msa1179140:CDS
CTTCATGCAGCTGTTAACTT+CGG 0.576471 8_1:+12344600 Msa1179140:CDS
ATCCAGAGGATTAGCTGTTG+AGG 0.576843 8_1:+12344293 Msa1179140:intron
GTGTGGCAAACTTAATTCGA+TGG 0.576956 8_1:-12343483 None:intergenic
GTTTGCATCTTTGGCCACCA+TGG 0.578178 8_1:-12344525 None:intergenic
GGAGTCACCAGCATTGTTGG+TGG 0.578759 8_1:+12339850 Msa1179140:CDS
ATTAGTGCTACAAAGACTGA+TGG 0.579932 8_1:+12339925 Msa1179140:CDS
GCAAACTATCTGAAATTGAA+GGG 0.581205 8_1:+12344895 Msa1179140:CDS
TTTATTGTGTCACGGTAATG+GGG 0.581682 8_1:-12343899 None:intergenic
CTCTCCAAGATACACTTCAT+CGG 0.582621 8_1:-12344811 None:intergenic
TTCAGGATATATCCTCCGTA+AGG 0.586657 8_1:-12344630 None:intergenic
TATTCCGGAGCCAGGAACAC+CGG 0.587335 8_1:+12344677 Msa1179140:CDS
GAGGACACCGCCTTTACCGA+TGG 0.588131 8_1:-12339803 None:intergenic
TGGTGATATCACAGTAGAAG+AGG 0.588913 8_1:+12343225 Msa1179140:CDS
AGTATAAGGAGACATAGTCT+TGG 0.589308 8_1:-12344410 None:intergenic
ACGGTTAGGAATATCTTCAA+GGG 0.589822 8_1:-12341859 None:intergenic
GACGCTGCCGGAAATTTGAT+CGG 0.595337 8_1:+12339826 Msa1179140:CDS
TATGGGATGCTATTAAGGCA+TGG 0.595717 8_1:+12344385 Msa1179140:CDS
TCAAATTTCCGGCAGCGTCG+AGG 0.595821 8_1:-12339822 None:intergenic
CACCCATCCATACCCTCGTA+GGG 0.597221 8_1:+12342279 Msa1179140:CDS
GTGTAGTTAGCAAGTCTGCA+TGG 0.598393 8_1:+12342946 Msa1179140:intron
CATTCATGCCATATTTGGAG+AGG 0.604180 8_1:+12343384 Msa1179140:CDS
CTTGTTCACCATCTGTGCGG+AGG 0.604396 8_1:-12342691 None:intergenic
AATATGGCATGAATGCATCA+TGG 0.606974 8_1:-12343376 None:intergenic
CTTGGAACATAAATCACACC+CGG 0.607189 8_1:-12342443 None:intergenic
GCACCCATCCATACCCTCGT+AGG 0.610393 8_1:+12342278 Msa1179140:CDS
TCCAAGGATTGGACGAACAA+GGG 0.614423 8_1:-12342248 None:intergenic
TTTAATAGAAAATGTGTGTG+TGG 0.616045 8_1:+12345048 Msa1179140:exon
CAATCACAGAAAGATCAACA+AGG 0.616597 8_1:-12344767 None:intergenic
TACCAGCTGATCTTATCAAG+AGG 0.619833 8_1:+12344053 Msa1179140:CDS
CTACCACTTCTAACCCTACG+AGG 0.624537 8_1:-12342292 None:intergenic
AACACCGGAATACGATGAGA+TGG 0.628633 8_1:+12344692 Msa1179140:CDS
AAAGTACCTCTAATTACTTG+AGG 0.628706 8_1:-12342731 None:intergenic
TTCAACGCCATAACGTCCAT+CGG 0.631507 8_1:+12339787 Msa1179140:CDS
ATTTGGCTGAGTATATCTGT+AGG 0.631512 8_1:-12342641 None:intergenic
GTATCTTCCAAGTCAAACAC+CGG 0.632900 8_1:+12342093 Msa1179140:CDS
TCACAAGACGAAGGCCATGA+GGG 0.633405 8_1:-12344326 None:intergenic
AACCCTACGAGGGTATGGAT+GGG 0.636331 8_1:-12342281 None:intergenic
AATGATCTCGGAAATCCAGA+TGG 0.636791 8_1:+12342217 Msa1179140:CDS
GATGGGTGCTAGATCCTCCA+AGG 0.636942 8_1:-12342264 None:intergenic
ATTACGGCCTAAGAAGGCAG+TGG 0.637013 8_1:-12339887 None:intergenic
TTATTGTGTCACGGTAATGG+GGG 0.638293 8_1:-12343898 None:intergenic
TACCCTCGTAGGGTTAGAAG+TGG 0.640886 8_1:+12342289 Msa1179140:CDS
GCTCCCAAAGTTGGTAACTG+AGG 0.644714 8_1:-12341726 None:intergenic
TATTGGACCCCATTTGAGTG+TGG 0.645377 8_1:-12343500 None:intergenic
ATCACAAGACGAAGGCCATG+AGG 0.648706 8_1:-12344327 None:intergenic
GTACCTCTAATTACTTGAGG+TGG 0.648845 8_1:-12342728 None:intergenic
AAGTTTGCCACACTCAAATG+GGG 0.650150 8_1:+12343493 Msa1179140:CDS
GATAGCTTCGATGAAGTGCG+TGG 0.651898 8_1:+12342593 Msa1179140:CDS
GCAATTGCACTGGTCCGGTG+CGG 0.652639 8_1:-12344956 None:intergenic
ATATGTGAAAGTGGAATACA+TGG 0.653339 8_1:-12345243 None:intergenic
CACAAGACGAAGGCCATGAG+GGG 0.654691 8_1:-12344325 None:intergenic
TACCACTTCTAACCCTACGA+GGG 0.657927 8_1:-12342291 None:intergenic
GAAGCTGTAGAAAAGGGTCA+TGG 0.659592 8_1:+12344486 Msa1179140:CDS
GAAGCTATCGAACTCGTTCG+GGG 0.668697 8_1:-12342579 None:intergenic
AGATTCATTTAATTGGTACG+TGG 0.669516 8_1:+12345326 Msa1179140:three_prime_UTR
GATCTCGGAAATCCAGATGG+TGG 0.675448 8_1:+12342220 Msa1179140:CDS
CTTATACTACCCAACAGACG+AGG 0.678166 8_1:+12344425 Msa1179140:CDS
CTTGAAGATATTCCTAACCG+TGG 0.678873 8_1:+12341861 Msa1179140:CDS
AATCACAGAAAGATCAACAA+GGG 0.683243 8_1:-12344766 None:intergenic
GCTGCCGGAAATTTGATCGG+AGG 0.683387 8_1:+12339829 Msa1179140:CDS
ACTTGAAAGACAAGCCATGG+TGG 0.686194 8_1:+12344511 Msa1179140:CDS
CAAGCTCTAATCAATGCTGG+CGG 0.688699 8_1:+12343941 Msa1179140:CDS
GGGCTTGTTCACCATCTGTG+CGG 0.689865 8_1:-12342694 None:intergenic
GTGACTTGAAAGACAAGCCA+TGG 0.691001 8_1:+12344508 Msa1179140:CDS
TTGAAGGGAAAATTACCAAG+AGG 0.691735 8_1:+12344910 Msa1179140:CDS
GATCCTAAGAGTGAGAAACC+GGG 0.695001 8_1:+12342425 Msa1179140:intron
ATAACGTCCATCGGTAAAGG+CGG 0.695538 8_1:+12339796 Msa1179140:CDS
TTCGGACAATATCCTTACGG+AGG 0.701012 8_1:+12344618 Msa1179140:CDS
TCTAGTTTGAGAAACCGCAC+CGG 0.712219 8_1:+12344942 Msa1179140:CDS
GTATTCTTGCCTGCACACGA+AGG 0.719494 8_1:+12343539 Msa1179140:CDS
AGTCCTCTATCACAAGACGA+AGG 0.740779 8_1:-12344335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATTAATTTTTTTTTAT+AGG - chr8_1:12342020-12342039 None:intergenic 0.0%
!!! AATAATTGAAGTATTATTTT+TGG - chr8_1:12339983-12340002 None:intergenic 10.0%
!! TTATTAAAATGTATATATTG+TGG + chr8_1:12340814-12340833 Msa1179140:intron 10.0%
!! TATTAAAATGTATATATTGT+GGG + chr8_1:12340815-12340834 Msa1179140:intron 10.0%
!! TCATGTTTATATTTATTTAT+TGG + chr8_1:12341582-12341601 Msa1179140:intron 10.0%
!!! TTTGAATTTTAAATTAACAA+GGG + chr8_1:12341969-12341988 Msa1179140:intron 10.0%
!!! AAATTATTTTTTGATATAAC+AGG + chr8_1:12343117-12343136 Msa1179140:intron 10.0%
!! TATATAAAGATTCATTTAAT+TGG + chr8_1:12345319-12345338 Msa1179140:three_prime_UTR 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:12344133-12344152 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:12344133-12344152 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:12344133-12344152 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:12344133-12344152 None:intergenic 100.0%
!!! TATTTAACTTTATGTGTTTT+TGG + chr8_1:12340052-12340071 Msa1179140:intron 15.0%
!!! TTTTTTGATAATTGTATTCA+CGG + chr8_1:12340173-12340192 Msa1179140:intron 15.0%
!!! AGGAAGATAAATTATTTTAT+TGG - chr8_1:12340254-12340273 None:intergenic 15.0%
!! TAAAGAGTTAAAATTATCAT+AGG - chr8_1:12340274-12340293 None:intergenic 15.0%
!! GAAATAGTTAAAAAATATTG+AGG + chr8_1:12340446-12340465 Msa1179140:intron 15.0%
!! TACTTATAAGATAAACTAAT+TGG - chr8_1:12340474-12340493 None:intergenic 15.0%
!! TAATATCTAACTAAACTTTA+AGG - chr8_1:12340658-12340677 None:intergenic 15.0%
!! TAAACAAAATGATTTATGTT+TGG + chr8_1:12341197-12341216 Msa1179140:intron 15.0%
!!! CTTTGAATTTTAAATTAACA+AGG + chr8_1:12341968-12341987 Msa1179140:intron 15.0%
!!! AATTTTTTCATTAATAATCG+TGG - chr8_1:12343778-12343797 None:intergenic 15.0%
!!! ATGTATAATTATTTTCTCTA+TGG + chr8_1:12345129-12345148 Msa1179140:three_prime_UTR 15.0%
!!! GATAAATTATTTTATTGGCA+TGG - chr8_1:12340249-12340268 None:intergenic 20.0%
!!! TTCCTTATTTTTCAACATTA+AGG + chr8_1:12340558-12340577 Msa1179140:intron 20.0%
!! AACCTTAATGTTGAAAAATA+AGG - chr8_1:12340563-12340582 None:intergenic 20.0%
!!! TATACATTTTAATAATGCTC+AGG - chr8_1:12340809-12340828 None:intergenic 20.0%
!!! CAATTATATTCTTTTTGGTA+GGG - chr8_1:12340922-12340941 None:intergenic 20.0%
!!! TGATGTATTCATTTTCTTTA+TGG + chr8_1:12340993-12341012 Msa1179140:intron 20.0%
!! TAAAGAATGAGAATTGATAA+AGG + chr8_1:12341287-12341306 Msa1179140:intron 20.0%
!! AAAGAATGAGAATTGATAAA+GGG + chr8_1:12341288-12341307 Msa1179140:intron 20.0%
!! GATCTAATAATAATCACTAA+GGG - chr8_1:12341556-12341575 None:intergenic 20.0%
!! TGATCTAATAATAATCACTA+AGG - chr8_1:12341557-12341576 None:intergenic 20.0%
!!! ATTTTTAATTTTGTAGCAAG+TGG + chr8_1:12341660-12341679 Msa1179140:intron 20.0%
!! AAATCATATGAAAAAATCAC+AGG + chr8_1:12342069-12342088 Msa1179140:intron 20.0%
!! TATGATGTTTATAATGATCT+CGG + chr8_1:12342205-12342224 Msa1179140:CDS 20.0%
!!! AATTAATGTGTCCATTTTAT+AGG + chr8_1:12342364-12342383 Msa1179140:intron 20.0%
!! AAAATTACAGATTGTAACAA+AGG - chr8_1:12342545-12342564 None:intergenic 20.0%
!! AAGTTTCAATTAAAAGTCAT+TGG + chr8_1:12343261-12343280 Msa1179140:intron 20.0%
!! TGTGATTGAAATTAAATTTG+TGG + chr8_1:12343313-12343332 Msa1179140:intron 20.0%
!! GGAATAAAAGCTTATAAATT+GGG - chr8_1:12343880-12343899 None:intergenic 20.0%
!!! AAACACATTTTATCATTAGA+GGG - chr8_1:12344159-12344178 None:intergenic 20.0%
!!! TAAACACATTTTATCATTAG+AGG - chr8_1:12344160-12344179 None:intergenic 20.0%
!! ATAAATCTTCTACTAATTGT+TGG - chr8_1:12344660-12344679 None:intergenic 20.0%
!! AATTAGTAGAAGATTTATTC+CGG + chr8_1:12344662-12344681 Msa1179140:CDS 20.0%
!! TATTAAATAGAGATACTGTT+GGG - chr8_1:12345035-12345054 None:intergenic 20.0%
!! TTGAAGTCCAAAACATTTTT+GGG - chr8_1:12339772-12339791 None:intergenic 25.0%
! AGTTAAATATGTCTCTCTAT+AGG - chr8_1:12340041-12340060 None:intergenic 25.0%
! TAGCATATTGAATAAATGTG+TGG - chr8_1:12340083-12340102 None:intergenic 25.0%
!! ATCGATAGTTAAGAGTTTTA+TGG + chr8_1:12340352-12340371 Msa1179140:intron 25.0%
! AATTCTCCTAAAAAGTTTAG+CGG - chr8_1:12340598-12340617 None:intergenic 25.0%
! GACACGTTAGATTATATAAT+TGG + chr8_1:12340890-12340909 Msa1179140:intron 25.0%
!!! CCAATTATATTCTTTTTGGT+AGG - chr8_1:12340923-12340942 None:intergenic 25.0%
! CCTACCAAAAAGAATATAAT+TGG + chr8_1:12340920-12340939 Msa1179140:intron 25.0%
!! GGTACCAATTATATTCTTTT+TGG - chr8_1:12340927-12340946 None:intergenic 25.0%
! ACTTGTTTATGTTCAATTAG+TGG - chr8_1:12340964-12340983 None:intergenic 25.0%
! ACTAATTGAACATAAACAAG+TGG + chr8_1:12340963-12340982 Msa1179140:intron 25.0%
!! TGAGAGAATTGATTTATGTT+TGG + chr8_1:12341153-12341172 Msa1179140:intron 25.0%
! ACTAAAATAGACATAGCTAA+AGG + chr8_1:12341256-12341275 Msa1179140:intron 25.0%
! TTTGAATATGATGCTAACTT+TGG + chr8_1:12341774-12341793 Msa1179140:CDS 25.0%
! TTCAATTTGATTGTAACTCA+TGG + chr8_1:12341889-12341908 Msa1179140:CDS 25.0%
! TCAATTTGATTGTAACTCAT+GGG + chr8_1:12341890-12341909 Msa1179140:CDS 25.0%
! AAATTCAAAGCTTACATCAT+TGG - chr8_1:12341958-12341977 None:intergenic 25.0%
!!! TCTTCTCTAAAGTGATTTAA+TGG - chr8_1:12342121-12342140 None:intergenic 25.0%
! GGACACATTAATTTCATTAA+CGG - chr8_1:12342357-12342376 None:intergenic 25.0%
! ATGACTTTATTCCATACATA+AGG - chr8_1:12342505-12342524 None:intergenic 25.0%
! TGAAATTAAATTTGTGGAAC+AGG + chr8_1:12343319-12343338 Msa1179140:intron 25.0%
! AAATTTATCCTCTCCAAATA+TGG - chr8_1:12343395-12343414 None:intergenic 25.0%
! TCTATATAATACATAACCCT+TGG + chr8_1:12343689-12343708 Msa1179140:intron 25.0%
! GAAAAAATTTATGACATTGC+AGG + chr8_1:12343789-12343808 Msa1179140:intron 25.0%
! GGGAATAAAAGCTTATAAAT+TGG - chr8_1:12343881-12343900 None:intergenic 25.0%
! CATTGATATTTATTGTGTCA+CGG - chr8_1:12343910-12343929 None:intergenic 25.0%
!! AACACATTTTATCATTAGAG+GGG - chr8_1:12344158-12344177 None:intergenic 25.0%
! TACATTTACTTGAGAATGTA+TGG - chr8_1:12344211-12344230 None:intergenic 25.0%
!!! GTTATGACAAACTTGTTAAT+TGG + chr8_1:12344246-12344265 Msa1179140:intron 25.0%
! TAGACACTGAAATTCAAAAA+TGG + chr8_1:12344457-12344476 Msa1179140:CDS 25.0%
! AATCTTGCTCCATTATTATA+TGG + chr8_1:12344565-12344584 Msa1179140:CDS 25.0%
!! GAGAGAATAATAACAAGTTT+TGG + chr8_1:12344829-12344848 Msa1179140:CDS 25.0%
! CTATTAAATAGAGATACTGT+TGG - chr8_1:12345036-12345055 None:intergenic 25.0%
! TTTAATAGAAAATGTGTGTG+TGG + chr8_1:12345048-12345067 Msa1179140:exon 25.0%
! AATCATCACATTGATGTTAT+TGG - chr8_1:12345103-12345122 None:intergenic 25.0%
! ATAACATCAATGTGATGATT+AGG + chr8_1:12345103-12345122 Msa1179140:three_prime_UTR 25.0%
!! ACATGTTTGCTAACTCTTTT+TGG - chr8_1:12339699-12339718 None:intergenic 30.0%
AAAAGAGTTAGCAAACATGT+TGG + chr8_1:12339699-12339718 Msa1179140:exon 30.0%
AAAGAGTTAGCAAACATGTT+GGG + chr8_1:12339700-12339719 Msa1179140:exon 30.0%
! GTTGAAGTCCAAAACATTTT+TGG - chr8_1:12339773-12339792 None:intergenic 30.0%
TTAATAATGCTCAGGTGTAT+TGG - chr8_1:12340801-12340820 None:intergenic 30.0%
!! TATATTCTTTTTGGTAGGGA+AGG - chr8_1:12340918-12340937 None:intergenic 30.0%
TTAGTGGAAAAACAATGACA+AGG - chr8_1:12340948-12340967 None:intergenic 30.0%
ATATTCAAAGCTGAACCAAA+CGG - chr8_1:12341079-12341098 None:intergenic 30.0%
!!! TTTTTGGCTAGAATTGCTTT+TGG + chr8_1:12341473-12341492 Msa1179140:intron 30.0%
! AATTTTGTAGCAAGTGGAAA+AGG + chr8_1:12341666-12341685 Msa1179140:intron 30.0%
TTCTTATGTAAAATGCTCCT+GGG - chr8_1:12341803-12341822 None:intergenic 30.0%
TTTCTTATGTAAAATGCTCC+TGG - chr8_1:12341804-12341823 None:intergenic 30.0%
AATCAAATTGAACACTTCCA+CGG - chr8_1:12341881-12341900 None:intergenic 30.0%
ATGAGAACGTTCCTATAAAA+TGG - chr8_1:12342378-12342397 None:intergenic 30.0%
! TTTTATAGGAACGTTCTCAT+TGG + chr8_1:12342378-12342397 Msa1179140:intron 30.0%
! GTTCCAAGAGATGAAAATTT+TGG + chr8_1:12342458-12342477 Msa1179140:CDS 30.0%
! TGACCAAAATTTTCATCTCT+TGG - chr8_1:12342464-12342483 None:intergenic 30.0%
TCATCAGATTTCCTTATGTA+TGG + chr8_1:12342491-12342510 Msa1179140:CDS 30.0%
! AAAGTACCTCTAATTACTTG+AGG - chr8_1:12342734-12342753 None:intergenic 30.0%
GTTACGAACATGTTAACTAT+AGG - chr8_1:12342776-12342795 None:intergenic 30.0%
!!! TAAAACTCGTGTTTTTTCTC+AGG + chr8_1:12342831-12342850 Msa1179140:intron 30.0%
TGGAATACTGATGAAGAATT+TGG + chr8_1:12342966-12342985 Msa1179140:CDS 30.0%
AAACTTAATTCGATGGCTAA+TGG - chr8_1:12343479-12343498 None:intergenic 30.0%
CTATGAAGAATTCATACCAA+TGG - chr8_1:12343640-12343659 None:intergenic 30.0%
GTATGTAACTATATCTGCAT+CGG - chr8_1:12343715-12343734 None:intergenic 30.0%
! CTATTTGTTGCTATGATGAA+TGG - chr8_1:12343839-12343858 None:intergenic 30.0%
ATTTATTGTGTCACGGTAAT+GGG - chr8_1:12343903-12343922 None:intergenic 30.0%
TATTTATTGTGTCACGGTAA+TGG - chr8_1:12343904-12343923 None:intergenic 30.0%
CGTGACACAATAAATATCAA+TGG + chr8_1:12343908-12343927 Msa1179140:CDS 30.0%
! ATAGAACAAACATTTTGTCC+TGG + chr8_1:12343968-12343987 Msa1179140:CDS 30.0%
GAAGAAATCTCAATGGAATT+TGG - chr8_1:12343995-12344014 None:intergenic 30.0%
TTCTGCAGTTTACAAGAATT+GGG + chr8_1:12344012-12344031 Msa1179140:CDS 30.0%
TTATATGTTCTCATGAGTCT+TGG - chr8_1:12344089-12344108 None:intergenic 30.0%
! ACACATTTTATCATTAGAGG+GGG - chr8_1:12344157-12344176 None:intergenic 30.0%
!! AGTTGATGGACTAGAAATAT+GGG + chr8_1:12344368-12344387 Msa1179140:CDS 30.0%
AGAAATATGGGATGCTATTA+AGG + chr8_1:12344380-12344399 Msa1179140:CDS 30.0%
ACACTGAAATTCAAAAATGG+TGG + chr8_1:12344460-12344479 Msa1179140:CDS 30.0%
! TGAAATTCAAAAATGGTGGA+AGG + chr8_1:12344464-12344483 Msa1179140:CDS 30.0%
! CATTATTATATGGACTGCTT+CGG + chr8_1:12344575-12344594 Msa1179140:CDS 30.0%
ATCTTCTACTAATTGTTGGA+CGG - chr8_1:12344656-12344675 None:intergenic 30.0%
AATCACAGAAAGATCAACAA+GGG - chr8_1:12344769-12344788 None:intergenic 30.0%
!!! ATAGTTTGCTTCCAAACTTT+TGG - chr8_1:12344884-12344903 None:intergenic 30.0%
! AGCAAACTATCTGAAATTGA+AGG + chr8_1:12344894-12344913 Msa1179140:CDS 30.0%
! GCAAACTATCTGAAATTGAA+GGG + chr8_1:12344895-12344914 Msa1179140:CDS 30.0%
ATATGTGAAAGTGGAATACA+TGG - chr8_1:12345246-12345265 None:intergenic 30.0%
CACTTTACTATATGTGAAAG+TGG - chr8_1:12345255-12345274 None:intergenic 30.0%
AGATTCATTTAATTGGTACG+TGG + chr8_1:12345326-12345345 Msa1179140:three_prime_UTR 30.0%
! GTTGATGCCCAAAAATGTTT+TGG + chr8_1:12339762-12339781 Msa1179140:CDS 35.0%
TCAACTGCATAGAGACATTA+CGG - chr8_1:12339906-12339925 None:intergenic 35.0%
ATTAGTGCTACAAAGACTGA+TGG + chr8_1:12339925-12339944 Msa1179140:CDS 35.0%
! GTTTCACCGCTAAACTTTTT+AGG + chr8_1:12340589-12340608 Msa1179140:intron 35.0%
AAACCTATACACGTTGTTCA+AGG + chr8_1:12341350-12341369 Msa1179140:intron 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG + chr8_1:12341381-12341400 Msa1179140:intron 35.0%
!! CTGAACAAACACGTTGTTTT+TGG + chr8_1:12341457-12341476 Msa1179140:intron 35.0%
TGGAAAAGGAATAGTTGGAA+AGG + chr8_1:12341680-12341699 Msa1179140:CDS 35.0%
ACGGTTAGGAATATCTTCAA+GGG - chr8_1:12341862-12341881 None:intergenic 35.0%
CTAAAGTGATTTAATGGAGC+CGG - chr8_1:12342115-12342134 None:intergenic 35.0%
GGTAGAAAACCAACTAGAAA+AGG + chr8_1:12342310-12342329 Msa1179140:CDS 35.0%
!! GTGAACTAACCTTTTCTAGT+TGG - chr8_1:12342322-12342341 None:intergenic 35.0%
TGGAATAAAGTCATTGTCAC+AGG + chr8_1:12342511-12342530 Msa1179140:CDS 35.0%
ATTTGGCTGAGTATATCTGT+AGG - chr8_1:12342644-12342663 None:intergenic 35.0%
ACGAACATGTTAACTATAGG+TGG - chr8_1:12342773-12342792 None:intergenic 35.0%
TGAAGAAGACGAATCACATT+AGG - chr8_1:12343017-12343036 None:intergenic 35.0%
!! CATCTAATGTGCTTTTTGGT+GGG - chr8_1:12343147-12343166 None:intergenic 35.0%
GAACACTTAGAGACTAATCT+TGG + chr8_1:12343205-12343224 Msa1179140:CDS 35.0%
ATGCATCATGGTAATCTAAG+AGG - chr8_1:12343367-12343386 None:intergenic 35.0%
AATATGGCATGAATGCATCA+TGG - chr8_1:12343379-12343398 None:intergenic 35.0%
TGATGCATTCATGCCATATT+TGG + chr8_1:12343379-12343398 Msa1179140:CDS 35.0%
ATCTTGTTCTTGCAAGATGA+TGG + chr8_1:12343443-12343462 Msa1179140:CDS 35.0%
TCTTGTTCTTGCAAGATGAT+GGG + chr8_1:12343444-12343463 Msa1179140:CDS 35.0%
TTAAGTTTGCCACACTCAAA+TGG + chr8_1:12343491-12343510 Msa1179140:CDS 35.0%
TAAGTTTGCCACACTCAAAT+GGG + chr8_1:12343492-12343511 Msa1179140:CDS 35.0%
!! AAGGTGTCGAAAGTACAATT+TGG + chr8_1:12343558-12343577 Msa1179140:CDS 35.0%
! CGAAAGTACAATTTGGATGT+TGG + chr8_1:12343565-12343584 Msa1179140:CDS 35.0%
TACAATTTGGATGTTGGCAA+AGG + chr8_1:12343571-12343590 Msa1179140:CDS 35.0%
TTTATTGTGTCACGGTAATG+GGG - chr8_1:12343902-12343921 None:intergenic 35.0%
AACTGCAGAAGAAATCTCAA+TGG - chr8_1:12344002-12344021 None:intergenic 35.0%
CTTCTGCAGTTTACAAGAAT+TGG + chr8_1:12344011-12344030 Msa1179140:CDS 35.0%
! ACATTTTATCATTAGAGGGG+GGG - chr8_1:12344155-12344174 None:intergenic 35.0%
! CACATTTTATCATTAGAGGG+GGG - chr8_1:12344156-12344175 None:intergenic 35.0%
AAATTGTTTGTCTGATCCAG+AGG + chr8_1:12344279-12344298 Msa1179140:intron 35.0%
!! CAGTTGATGGACTAGAAATA+TGG + chr8_1:12344367-12344386 Msa1179140:CDS 35.0%
AGTATAAGGAGACATAGTCT+TGG - chr8_1:12344413-12344432 None:intergenic 35.0%
TCTTGAACAGTTTGCATCTT+TGG - chr8_1:12344537-12344556 None:intergenic 35.0%
CGAAGCAGTCCATATAATAA+TGG - chr8_1:12344577-12344596 None:intergenic 35.0%
AACTTCGGACAATATCCTTA+CGG + chr8_1:12344615-12344634 Msa1179140:CDS 35.0%
TTTACCATCTCATCGTATTC+CGG - chr8_1:12344699-12344718 None:intergenic 35.0%
GATGGTAAAAAGTCCTCAAA+AGG + chr8_1:12344710-12344729 Msa1179140:CDS 35.0%
! GTTCTCAAATATGCCTTTTG+AGG - chr8_1:12344726-12344745 None:intergenic 35.0%
CAATCACAGAAAGATCAACA+AGG - chr8_1:12344770-12344789 None:intergenic 35.0%
! TTTGCTTCCAAACTTTTGGA+AGG - chr8_1:12344880-12344899 None:intergenic 35.0%
TTGAAGGGAAAATTACCAAG+AGG + chr8_1:12344910-12344929 Msa1179140:CDS 35.0%
GAAGAAGGTTTAACATTCAG+AGG + chr8_1:12345005-12345024 Msa1179140:CDS 35.0%
TACAACATCACTGCTGTATT+TGG + chr8_1:12345167-12345186 Msa1179140:three_prime_UTR 35.0%
ACAACATCACTGCTGTATTT+GGG + chr8_1:12345168-12345187 Msa1179140:three_prime_UTR 35.0%
ATGTTGGGCATCTTTGACAA+GGG + chr8_1:12339715-12339734 Msa1179140:CDS 40.0%
TGACAAGGGCCAAAAAATCA+AGG + chr8_1:12339729-12339748 Msa1179140:CDS 40.0%
GACAAGGGCCAAAAAATCAA+GGG + chr8_1:12339730-12339749 Msa1179140:CDS 40.0%
ACCAAACGGACACTAAAAGA+GGG - chr8_1:12341065-12341084 None:intergenic 40.0%
AACCAAACGGACACTAAAAG+AGG - chr8_1:12341066-12341085 None:intergenic 40.0%
TCTCCTTGAACAACGTGTAT+AGG - chr8_1:12341356-12341375 None:intergenic 40.0%
AGCTAGGATTTGTAGCTTCA+TGG + chr8_1:12341397-12341416 Msa1179140:intron 40.0%
! GCTTCATGGAGAATTGCTTT+TGG + chr8_1:12341411-12341430 Msa1179140:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG + chr8_1:12341414-12341433 Msa1179140:intron 40.0%
ATAATCACTAAGGGCCTGTT+TGG - chr8_1:12341547-12341566 None:intergenic 40.0%
GCAAGTGGAAAAGGAATAGT+TGG + chr8_1:12341675-12341694 Msa1179140:intron 40.0%
TCTTCCTCAGTTACCAACTT+TGG + chr8_1:12341722-12341741 Msa1179140:CDS 40.0%
CTTCCTCAGTTACCAACTTT+GGG + chr8_1:12341723-12341742 Msa1179140:CDS 40.0%
AAGCTGAGTTCTTCCTTGTT+AGG + chr8_1:12341832-12341851 Msa1179140:CDS 40.0%
AGCTGAGTTCTTCCTTGTTA+GGG + chr8_1:12341833-12341852 Msa1179140:CDS 40.0%
CACGGTTAGGAATATCTTCA+AGG - chr8_1:12341863-12341882 None:intergenic 40.0%
CTTGAAGATATTCCTAACCG+TGG + chr8_1:12341861-12341880 Msa1179140:CDS 40.0%
AATTGAACACTTCCACGGTT+AGG - chr8_1:12341876-12341895 None:intergenic 40.0%
GTATCTTCCAAGTCAAACAC+CGG + chr8_1:12342093-12342112 Msa1179140:CDS 40.0%
GAAGAGTTGCAGAATCTAAG+AGG + chr8_1:12342139-12342158 Msa1179140:CDS 40.0%
TTGCAGAATCTAAGAGGAGA+TGG + chr8_1:12342145-12342164 Msa1179140:CDS 40.0%
AATCTAAGAGGAGATGGAAC+TGG + chr8_1:12342151-12342170 Msa1179140:CDS 40.0%
AACTGGAGAACGCAAAGAAT+GGG + chr8_1:12342168-12342187 Msa1179140:CDS 40.0%
AATGATCTCGGAAATCCAGA+TGG + chr8_1:12342217-12342236 Msa1179140:CDS 40.0%
AGATCCTAAGAGTGAGAAAC+CGG + chr8_1:12342424-12342443 Msa1179140:intron 40.0%
CTTGGAACATAAATCACACC+CGG - chr8_1:12342446-12342465 None:intergenic 40.0%
!! TTGAGGTGGTGGAAACTTAA+GGG - chr8_1:12342717-12342736 None:intergenic 40.0%
GTACCTCTAATTACTTGAGG+TGG - chr8_1:12342731-12342750 None:intergenic 40.0%
!! GCATCTAATGTGCTTTTTGG+TGG - chr8_1:12343148-12343167 None:intergenic 40.0%
! GTGGCATCTAATGTGCTTTT+TGG - chr8_1:12343151-12343170 None:intergenic 40.0%
ACATTAGATGCCACTGTCTA+TGG + chr8_1:12343157-12343176 Msa1179140:CDS 40.0%
!! GTTTTGATCACCATAGACAG+TGG - chr8_1:12343170-12343189 None:intergenic 40.0%
TGGTGATATCACAGTAGAAG+AGG + chr8_1:12343225-12343244 Msa1179140:CDS 40.0%
TTTGTGGAACAGGCACTTAA+TGG + chr8_1:12343329-12343348 Msa1179140:intron 40.0%
CATTCATGCCATATTTGGAG+AGG + chr8_1:12343384-12343403 Msa1179140:CDS 40.0%
GTGTGGCAAACTTAATTCGA+TGG - chr8_1:12343486-12343505 None:intergenic 40.0%
AAGTTTGCCACACTCAAATG+GGG + chr8_1:12343493-12343512 Msa1179140:CDS 40.0%
CTTTGCTTTCAGCACCATAT+TGG - chr8_1:12343520-12343539 None:intergenic 40.0%
ATCATCAACTCATGAGCCAT+TGG + chr8_1:12343621-12343640 Msa1179140:CDS 40.0%
TCGTGGCATACATTATCTCT+TGG - chr8_1:12343761-12343780 None:intergenic 40.0%
GTTGAATACTCATGCAGTGA+TGG + chr8_1:12343811-12343830 Msa1179140:CDS 40.0%
! TTATTGTGTCACGGTAATGG+GGG - chr8_1:12343901-12343920 None:intergenic 40.0%
ATCTCAATGGAATTTGGTCC+AGG - chr8_1:12343989-12344008 None:intergenic 40.0%
TACCAGCTGATCTTATCAAG+AGG + chr8_1:12344053-12344072 Msa1179140:CDS 40.0%
TACCTCTTGATAAGATCAGC+TGG - chr8_1:12344058-12344077 None:intergenic 40.0%
TATGTTCTCATGAGTCTTGG+TGG - chr8_1:12344086-12344105 None:intergenic 40.0%
! ATTTTATCATTAGAGGGGGG+GGG - chr8_1:12344153-12344172 None:intergenic 40.0%
! CATTTTATCATTAGAGGGGG+GGG - chr8_1:12344154-12344173 None:intergenic 40.0%
CTAGTCCATCAACTGCATAA+GGG - chr8_1:12344362-12344381 None:intergenic 40.0%
TCTAGTCCATCAACTGCATA+AGG - chr8_1:12344363-12344382 None:intergenic 40.0%
TATGGGATGCTATTAAGGCA+TGG + chr8_1:12344385-12344404 Msa1179140:CDS 40.0%
ATGGGATGCTATTAAGGCAT+GGG + chr8_1:12344386-12344405 Msa1179140:CDS 40.0%
TGGAAGGAAGCTGTAGAAAA+GGG + chr8_1:12344480-12344499 Msa1179140:CDS 40.0%
GATGCAAACTGTTCAAGACT+TGG + chr8_1:12344539-12344558 Msa1179140:CDS 40.0%
CTTCATGCAGCTGTTAACTT+CGG + chr8_1:12344600-12344619 Msa1179140:CDS 40.0%
TACTAATTGTTGGACGGTTC+AGG - chr8_1:12344650-12344669 None:intergenic 40.0%
! TCAACAAGGGTTTGGTACTT+TGG - chr8_1:12344756-12344775 None:intergenic 40.0%
CAGAAAGATCAACAAGGGTT+TGG - chr8_1:12344764-12344783 None:intergenic 40.0%
CTCTCCAAGATACACTTCAT+CGG - chr8_1:12344814-12344833 None:intergenic 40.0%
!!! AGTTTTGGACATCTGATGCA+AGG + chr8_1:12344844-12344863 Msa1179140:CDS 40.0%
!! GTTTTGGACATCTGATGCAA+GGG + chr8_1:12344845-12344864 Msa1179140:CDS 40.0%
GTTCAAGCCTTCCAAAAGTT+TGG + chr8_1:12344870-12344889 Msa1179140:CDS 40.0%
ACTAGACTCATTGTTCCTCT+TGG - chr8_1:12344928-12344947 None:intergenic 40.0%
AAAGTGTATGGCAATTGCAC+TGG - chr8_1:12344969-12344988 None:intergenic 40.0%
AACCTTCTTCACTTGAACGA+AGG - chr8_1:12344995-12345014 None:intergenic 40.0%
TACATGGTGCAAAGCAATAG+TGG - chr8_1:12345230-12345249 None:intergenic 40.0%
CATGTTGGGCATCTTTGACA+AGG + chr8_1:12339714-12339733 Msa1179140:exon 45.0%
!!! CCACAGTGCCCTTGATTTTT+TGG - chr8_1:12339741-12339760 None:intergenic 45.0%
!! CCAAAAAATCAAGGGCACTG+TGG + chr8_1:12339738-12339757 Msa1179140:CDS 45.0%
TTCAACGCCATAACGTCCAT+CGG + chr8_1:12339787-12339806 Msa1179140:CDS 45.0%
ATAACGTCCATCGGTAAAGG+CGG + chr8_1:12339796-12339815 Msa1179140:CDS 45.0%
GACTCCTCCGATCAAATTTC+CGG - chr8_1:12339836-12339855 None:intergenic 45.0%
AACAACTCCACCAACAATGC+TGG - chr8_1:12339860-12339879 None:intergenic 45.0%
AGAGACATTACGGCCTAAGA+AGG - chr8_1:12339896-12339915 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG + chr8_1:12340117-12340136 Msa1179140:intron 45.0%
TGCTCAGGTGTATTGGAGTT+TGG - chr8_1:12340794-12340813 None:intergenic 45.0%
! TCCCTCTTTTAGTGTCCGTT+TGG + chr8_1:12341061-12341080 Msa1179140:intron 45.0%
TCTCAGAAGCCAAACCAAAC+AGG + chr8_1:12341530-12341549 Msa1179140:intron 45.0%
TCTTGTCTTGCTCCCAAAGT+TGG - chr8_1:12341738-12341757 None:intergenic 45.0%
!! GATGCTAACTTTGGAATCCC+AGG + chr8_1:12341783-12341802 Msa1179140:CDS 45.0%
GAACTGGAGAACGCAAAGAA+TGG + chr8_1:12342167-12342186 Msa1179140:CDS 45.0%
GAGAACGCAAAGAATGGGAT+AGG + chr8_1:12342173-12342192 Msa1179140:CDS 45.0%
TCCAAGGATTGGACGAACAA+GGG - chr8_1:12342251-12342270 None:intergenic 45.0%
TACCACTTCTAACCCTACGA+GGG - chr8_1:12342294-12342313 None:intergenic 45.0%
GATCCTAAGAGTGAGAAACC+GGG + chr8_1:12342425-12342444 Msa1179140:intron 45.0%
TCGAAGCTATCGAACTCGTT+CGG - chr8_1:12342584-12342603 None:intergenic 45.0%
! ATTTCCTTAAGGGCTGGCAA+GGG - chr8_1:12342671-12342690 None:intergenic 45.0%
TGTGCGGAGGATTTCCTTAA+GGG - chr8_1:12342681-12342700 None:intergenic 45.0%
!! CTTGAGGTGGTGGAAACTTA+AGG - chr8_1:12342718-12342737 None:intergenic 45.0%
CCTCTAATTACTTGAGGTGG+TGG - chr8_1:12342728-12342747 None:intergenic 45.0%
CCACCACCTCAAGTAATTAG+AGG + chr8_1:12342725-12342744 Msa1179140:CDS 45.0%
GTGTAGTTAGCAAGTCTGCA+TGG + chr8_1:12342946-12342965 Msa1179140:intron 45.0%
TTTGGAAGAGAGATGCTTGC+TGG + chr8_1:12342984-12343003 Msa1179140:CDS 45.0%
GTGCAAAAGCTTACGCTACA+AGG + chr8_1:12343417-12343436 Msa1179140:CDS 45.0%
TATTGGACCCCATTTGAGTG+TGG - chr8_1:12343503-12343522 None:intergenic 45.0%
CACTCAAATGGGGTCCAATA+TGG + chr8_1:12343503-12343522 Msa1179140:CDS 45.0%
! ACTATATCTGCATCGGCCAA+GGG - chr8_1:12343708-12343727 None:intergenic 45.0%
! AACTATATCTGCATCGGCCA+AGG - chr8_1:12343709-12343728 None:intergenic 45.0%
CATTATCTCTTGGCCAATGC+AGG - chr8_1:12343751-12343770 None:intergenic 45.0%
! CGACAAGCTCTAATCAATGC+TGG + chr8_1:12343938-12343957 Msa1179140:CDS 45.0%
! CAAGCTCTAATCAATGCTGG+CGG + chr8_1:12343941-12343960 Msa1179140:CDS 45.0%
! TTTTATCATTAGAGGGGGGG+GGG - chr8_1:12344152-12344171 None:intergenic 45.0%
!! ATCCAGAGGATTAGCTGTTG+AGG + chr8_1:12344293-12344312 Msa1179140:intron 45.0%
ATCCTCAACAGCTAATCCTC+TGG - chr8_1:12344298-12344317 None:intergenic 45.0%
AGTCCTCTATCACAAGACGA+AGG - chr8_1:12344338-12344357 None:intergenic 45.0%
GACTACCCTTATGCAGTTGA+TGG + chr8_1:12344354-12344373 Msa1179140:CDS 45.0%
CTCGTCTGTTGGGTAGTATA+AGG - chr8_1:12344427-12344446 None:intergenic 45.0%
CTTATACTACCCAACAGACG+AGG + chr8_1:12344425-12344444 Msa1179140:CDS 45.0%
GTGGAAGGAAGCTGTAGAAA+AGG + chr8_1:12344479-12344498 Msa1179140:CDS 45.0%
GAAGCTGTAGAAAAGGGTCA+TGG + chr8_1:12344486-12344505 Msa1179140:CDS 45.0%
GTGACTTGAAAGACAAGCCA+TGG + chr8_1:12344508-12344527 Msa1179140:CDS 45.0%
ACTTGAAAGACAAGCCATGG+TGG + chr8_1:12344511-12344530 Msa1179140:CDS 45.0%
TTCGGACAATATCCTTACGG+AGG + chr8_1:12344618-12344637 Msa1179140:CDS 45.0%
AGAAGATTTATTCCGGAGCC+AGG + chr8_1:12344669-12344688 Msa1179140:CDS 45.0%
AACACCGGAATACGATGAGA+TGG + chr8_1:12344692-12344711 Msa1179140:CDS 45.0%
! TCTAGTTTGAGAAACCGCAC+CGG + chr8_1:12344942-12344961 Msa1179140:CDS 45.0%
GAACGAAGGAGCAAAGTGTA+TGG - chr8_1:12344981-12345000 None:intergenic 45.0%
CTCCTTCGTTCAAGTGAAGA+AGG + chr8_1:12344990-12345009 Msa1179140:CDS 45.0%
!!! AAAACAATAATATAATATTT+TGG + chr8_1:12340854-12340873 Msa1179140:intron 5.0%
!!! AAACAATAATATAATATTTT+GGG + chr8_1:12340855-12340874 Msa1179140:intron 5.0%
!!! CAAAAAATAAATATTTTTAT+TGG - chr8_1:12341621-12341640 None:intergenic 5.0%
GCCATAACGTCCATCGGTAA+AGG + chr8_1:12339793-12339812 Msa1179140:CDS 50.0%
GCCTTTACCGATGGACGTTA+TGG - chr8_1:12339797-12339816 None:intergenic 50.0%
GACGCTGCCGGAAATTTGAT+CGG + chr8_1:12339826-12339845 Msa1179140:CDS 50.0%
GATACTGCCACTGCCTTCTT+AGG + chr8_1:12339880-12339899 Msa1179140:CDS 50.0%
ATTACGGCCTAAGAAGGCAG+TGG - chr8_1:12339890-12339909 None:intergenic 50.0%
CACTAAGGGCCTGTTTGGTT+TGG - chr8_1:12341542-12341561 None:intergenic 50.0%
!! GCTCCCAAAGTTGGTAACTG+AGG - chr8_1:12341729-12341748 None:intergenic 50.0%
CTTCAAGGGTCACCCTAACA+AGG - chr8_1:12341848-12341867 None:intergenic 50.0%
AATGGAGCCGGTGTTTGACT+TGG - chr8_1:12342103-12342122 None:intergenic 50.0%
GATCTCGGAAATCCAGATGG+TGG + chr8_1:12342220-12342239 Msa1179140:CDS 50.0%
CTCCAAGGATTGGACGAACA+AGG - chr8_1:12342252-12342271 None:intergenic 50.0%
CTTGTTCGTCCAATCCTTGG+AGG + chr8_1:12342250-12342269 Msa1179140:CDS 50.0%
GTGCTAGATCCTCCAAGGAT+TGG - chr8_1:12342262-12342281 None:intergenic 50.0%
! AACCCTACGAGGGTATGGAT+GGG - chr8_1:12342284-12342303 None:intergenic 50.0%
! TAACCCTACGAGGGTATGGA+TGG - chr8_1:12342285-12342304 None:intergenic 50.0%
CTTCTAACCCTACGAGGGTA+TGG - chr8_1:12342289-12342308 None:intergenic 50.0%
TACCCTCGTAGGGTTAGAAG+TGG + chr8_1:12342289-12342308 Msa1179140:CDS 50.0%
CTACCACTTCTAACCCTACG+AGG - chr8_1:12342295-12342314 None:intergenic 50.0%
ACACCCGGTTTCTCACTCTT+AGG - chr8_1:12342431-12342450 None:intergenic 50.0%
GAAGCTATCGAACTCGTTCG+GGG - chr8_1:12342582-12342601 None:intergenic 50.0%
CGAAGCTATCGAACTCGTTC+GGG - chr8_1:12342583-12342602 None:intergenic 50.0%
GATAGCTTCGATGAAGTGCG+TGG + chr8_1:12342593-12342612 Msa1179140:CDS 50.0%
! GAAGTGCGTGGACTTTTCGA+AGG + chr8_1:12342605-12342624 Msa1179140:CDS 50.0%
! TTTCCTTAAGGGCTGGCAAG+GGG - chr8_1:12342670-12342689 None:intergenic 50.0%
! GATTTCCTTAAGGGCTGGCA+AGG - chr8_1:12342672-12342691 None:intergenic 50.0%
CTGTGCGGAGGATTTCCTTA+AGG - chr8_1:12342682-12342701 None:intergenic 50.0%
AAGGAAATCCTCCGCACAGA+TGG + chr8_1:12342683-12342702 Msa1179140:CDS 50.0%
GTATTCTTGCCTGCACACGA+AGG + chr8_1:12343539-12343558 Msa1179140:CDS 50.0%
TTTATCATTAGAGGGGGGGG+GGG - chr8_1:12344151-12344170 None:intergenic 50.0%
TCACAAGACGAAGGCCATGA+GGG - chr8_1:12344329-12344348 None:intergenic 50.0%
ATCACAAGACGAAGGCCATG+AGG - chr8_1:12344330-12344349 None:intergenic 50.0%
TGGCCTTCGTCTTGTGATAG+AGG + chr8_1:12344332-12344351 Msa1179140:CDS 50.0%
TTTGCACTGCCTCGTCTGTT+GGG - chr8_1:12344437-12344456 None:intergenic 50.0%
ATTTGCACTGCCTCGTCTGT+TGG - chr8_1:12344438-12344457 None:intergenic 50.0%
GTTTGCATCTTTGGCCACCA+TGG - chr8_1:12344528-12344547 None:intergenic 50.0%
TCATCGTATTCCGGTGTTCC+TGG - chr8_1:12344690-12344709 None:intergenic 50.0%
GCGTCCGATGAAGTGTATCT+TGG + chr8_1:12344807-12344826 Msa1179140:CDS 50.0%
! GTATGGCAATTGCACTGGTC+CGG - chr8_1:12344964-12344983 None:intergenic 50.0%
TCAAATTTCCGGCAGCGTCG+AGG - chr8_1:12339825-12339844 None:intergenic 55.0%
GCTGCCGGAAATTTGATCGG+AGG + chr8_1:12339829-12339848 Msa1179140:CDS 55.0%
GGAGGAGTCACCAGCATTGT+TGG + chr8_1:12339847-12339866 Msa1179140:CDS 55.0%
GGAGTCACCAGCATTGTTGG+TGG + chr8_1:12339850-12339869 Msa1179140:CDS 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr8_1:12340115-12340134 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr8_1:12340112-12340131 Msa1179140:intron 55.0%
GCCCTTGTTCGTCCAATCCT+TGG + chr8_1:12342247-12342266 Msa1179140:CDS 55.0%
GATGGGTGCTAGATCCTCCA+AGG - chr8_1:12342267-12342286 None:intergenic 55.0%
CACCCATCCATACCCTCGTA+GGG + chr8_1:12342279-12342298 Msa1179140:CDS 55.0%
! GTGCGTGGACTTTTCGAAGG+TGG + chr8_1:12342608-12342627 Msa1179140:CDS 55.0%
CGGAGGATTTCCTTAAGGGC+TGG - chr8_1:12342677-12342696 None:intergenic 55.0%
CTTGTTCACCATCTGTGCGG+AGG - chr8_1:12342694-12342713 None:intergenic 55.0%
! GGGCTTGTTCACCATCTGTG+CGG - chr8_1:12342697-12342716 None:intergenic 55.0%
CTTTCGACACCTTCGTGTGC+AGG - chr8_1:12343551-12343570 None:intergenic 55.0%
TCTGCATGCTACGCCTGCAT+TGG + chr8_1:12343735-12343754 Msa1179140:intron 55.0%
TTATCATTAGAGGGGGGGGG+GGG - chr8_1:12344150-12344169 None:intergenic 55.0%
GAGGATCCATCTTCCCCTCA+TGG + chr8_1:12344312-12344331 Msa1179140:CDS 55.0%
CACAAGACGAAGGCCATGAG+GGG - chr8_1:12344328-12344347 None:intergenic 55.0%
TATTCCGGAGCCAGGAACAC+CGG + chr8_1:12344677-12344696 Msa1179140:CDS 55.0%
TATTCCGGTGTTCCTGGCTC+CGG - chr8_1:12344684-12344703 None:intergenic 55.0%
GAGGACACCGCCTTTACCGA+TGG - chr8_1:12339806-12339825 None:intergenic 60.0%
GCACCCATCCATACCCTCGT+AGG + chr8_1:12342278-12342297 Msa1179140:CDS 60.0%
! GGGCTGGCAAGGGGCTAATT+TGG - chr8_1:12342661-12342680 None:intergenic 60.0%
TAGCCCCTTGCCAGCCCTTA+AGG + chr8_1:12342664-12342683 Msa1179140:CDS 60.0%
TATCATTAGAGGGGGGGGGG+GGG - chr8_1:12344149-12344168 None:intergenic 60.0%
CGAAGGCCATGAGGGGAAGA+TGG - chr8_1:12344321-12344340 None:intergenic 60.0%
! GCAATTGCACTGGTCCGGTG+CGG - chr8_1:12344959-12344978 None:intergenic 60.0%
!! ACAAGGGCGTCGCCACCATC+TGG - chr8_1:12342235-12342254 None:intergenic 65.0%
ATCATTAGAGGGGGGGGGGG+GGG - chr8_1:12344148-12344167 None:intergenic 65.0%
TCATTAGAGGGGGGGGGGGG+GGG - chr8_1:12344147-12344166 None:intergenic 70.0%
GGCGGTGTCCTCGACGCTGC+CGG + chr8_1:12339814-12339833 Msa1179140:CDS 75.0%
ATTAGAGGGGGGGGGGGGGG+GGG - chr8_1:12344145-12344164 None:intergenic 75.0%
CATTAGAGGGGGGGGGGGGG+GGG - chr8_1:12344146-12344165 None:intergenic 75.0%
! TTAGAGGGGGGGGGGGGGGG+GGG - chr8_1:12344144-12344163 None:intergenic 80.0%
! TAGAGGGGGGGGGGGGGGGG+GGG - chr8_1:12344143-12344162 None:intergenic 85.0%
! AGAGGGGGGGGGGGGGGGGG+GGG - chr8_1:12344142-12344161 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG - chr8_1:12344140-12344159 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG - chr8_1:12344141-12344160 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 12339644 12345392 12339644 ID=Msa1179140;Name=Msa1179140
chr8_1 mRNA 12339644 12345392 12339644 ID=Msa1179140-mRNA-1;Parent=Msa1179140;Name=Msa1179140-mRNA-1;_AED=0.29;_eAED=0.29;_QI=71|1|1|1|1|1|9|340|864
chr8_1 exon 12339644 12339946 12339644 ID=Msa1179140-mRNA-1:exon:4378;Parent=Msa1179140-mRNA-1
chr8_1 exon 12341676 12341962 12341676 ID=Msa1179140-mRNA-1:exon:4379;Parent=Msa1179140-mRNA-1
chr8_1 exon 12342091 12342331 12342091 ID=Msa1179140-mRNA-1:exon:4380;Parent=Msa1179140-mRNA-1
chr8_1 exon 12342426 12342746 12342426 ID=Msa1179140-mRNA-1:exon:4381;Parent=Msa1179140-mRNA-1
chr8_1 exon 12342952 12343037 12342952 ID=Msa1179140-mRNA-1:exon:4382;Parent=Msa1179140-mRNA-1
chr8_1 exon 12343139 12343246 12343139 ID=Msa1179140-mRNA-1:exon:4383;Parent=Msa1179140-mRNA-1
chr8_1 exon 12343341 12343642 12343341 ID=Msa1179140-mRNA-1:exon:4384;Parent=Msa1179140-mRNA-1
chr8_1 exon 12343811 12344074 12343811 ID=Msa1179140-mRNA-1:exon:4385;Parent=Msa1179140-mRNA-1
chr8_1 exon 12344299 12345392 12344299 ID=Msa1179140-mRNA-1:exon:4386;Parent=Msa1179140-mRNA-1
chr8_1 five_prime_UTR 12339644 12339714 12339644 ID=Msa1179140-mRNA-1:five_prime_utr;Parent=Msa1179140-mRNA-1
chr8_1 CDS 12339715 12339946 12339715 ID=Msa1179140-mRNA-1:cds;Parent=Msa1179140-mRNA-1
chr8_1 CDS 12341676 12341962 12341676 ID=Msa1179140-mRNA-1:cds;Parent=Msa1179140-mRNA-1
chr8_1 CDS 12342091 12342331 12342091 ID=Msa1179140-mRNA-1:cds;Parent=Msa1179140-mRNA-1
chr8_1 CDS 12342426 12342746 12342426 ID=Msa1179140-mRNA-1:cds;Parent=Msa1179140-mRNA-1
chr8_1 CDS 12342952 12343037 12342952 ID=Msa1179140-mRNA-1:cds;Parent=Msa1179140-mRNA-1
chr8_1 CDS 12343139 12343246 12343139 ID=Msa1179140-mRNA-1:cds;Parent=Msa1179140-mRNA-1
chr8_1 CDS 12343341 12343642 12343341 ID=Msa1179140-mRNA-1:cds;Parent=Msa1179140-mRNA-1
chr8_1 CDS 12343811 12344074 12343811 ID=Msa1179140-mRNA-1:cds;Parent=Msa1179140-mRNA-1
chr8_1 CDS 12344299 12345052 12344299 ID=Msa1179140-mRNA-1:cds;Parent=Msa1179140-mRNA-1
chr8_1 three_prime_UTR 12345053 12345392 12345053 ID=Msa1179140-mRNA-1:three_prime_utr;Parent=Msa1179140-mRNA-1
Gene Sequence

>Msa1179140

ATGTTGGGCATCTTTGACAAGGGCCAAAAAATCAAGGGCACTGTGGTGTTGATGCCCAAAAATGTTTTGGACTTCAACGCCATAACGTCCATCGGTAAAGGCGGTGTCCTCGACGCTGCCGGAAATTTGATCGGAGGAGTCACCAGCATTGTTGGTGGAGTTGTTGATACTGCCACTGCCTTCTTAGGCCGTAATGTCTCTATGCAGTTGATTAGTGCTACAAAGACTGATGCAAGTGGAAAAGGAATAGTTGGAAAGGAAACATTTTTGAGCAAACATCTTCCTCAGTTACCAACTTTGGGAGCAAGACAAGATGCATTCAGTATTTTCTTTGAATATGATGCTAACTTTGGAATCCCAGGAGCATTTTACATAAGAAATTACACACAAGCTGAGTTCTTCCTTGTTAGGGTGACCCTTGAAGATATTCCTAACCGTGGAAGTGTTCAATTTGATTGTAACTCATGGGTTTACAACTTCAAAAGTTACAAAAATAATCGCATCTTCTTCACCAATGATGCGTATCTTCCAAGTCAAACACCGGCTCCATTAAATCACTTTAGAGAAGAAGAGTTGCAGAATCTAAGAGGAGATGGAACTGGAGAACGCAAAGAATGGGATAGGATATACGATTATGATGTTTATAATGATCTCGGAAATCCAGATGGTGGCGACGCCCTTGTTCGTCCAATCCTTGGAGGATCTAGCACCCATCCATACCCTCGTAGGGTTAGAAGTGGTAGAAAACCAACTAGAAAAGATCCTAAGAGTGAGAAACCGGGTGTGATTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGATTTCCTTATGTATGGAATAAAGTCATTGTCACAGGACGTCTTGCCTTTGTTACAATCTGTAATTTTTGATCTGAATTTCACCCCGAACGAGTTCGATAGCTTCGATGAAGTGCGTGGACTTTTCGAAGGTGGAATTAAGCTTCCTACAGATATACTCAGCCAAATTAGCCCCTTGCCAGCCCTTAAGGAAATCCTCCGCACAGATGGTGAACAAGCCCTTAAGTTTCCACCACCTCAAGTAATTAGAGTTAGCAAGTCTGCATGGAATACTGATGAAGAATTTGGAAGAGAGATGCTTGCTGGTGTAAATCCTAATGTGATTCGTCTTCTTCAAGAGTTCCCACCAAAAAGCACATTAGATGCCACTGTCTATGGTGATCAAAACAGTACAATAACAAAAGAACACTTAGAGACTAATCTTGGTGATATCACAGTAGAAGAGGCACTTAATGGAAAGAGATTATTCCTCTTAGATTACCATGATGCATTCATGCCATATTTGGAGAGGATAAATTTAAGTGCAAAAGCTTACGCTACAAGGACAATCTTGTTCTTGCAAGATGATGGGACTTTGAAGCCATTAGCCATCGAATTAAGTTTGCCACACTCAAATGGGGTCCAATATGGTGCTGAAAGCAAAGTATTCTTGCCTGCACACGAAGGTGTCGAAAGTACAATTTGGATGTTGGCAAAGGCTCATGTCATTGTAAATGACTCATGCTATCATCAACTCATGAGCCATTGGTTGAATACTCATGCAGTGATGGAACCATTCATCATAGCAACAAATAGACATCTAAGTGTGCTTCACCCAATTTATAAGCTTTTATTCCCCCATTACCGTGACACAATAAATATCAATGGACTTGCTCGACAAGCTCTAATCAATGCTGGCGGAATTATAGAACAAACATTTTGTCCTGGACCAAATTCCATTGAGATTTCTTCTGCAGTTTACAAGAATTGGGTTTTCACTGATCAAGCATTACCAGCTGATCTTATCAAGAGAGGATTAGCTGTTGAGGATCCATCTTCCCCTCATGGCCTTCGTCTTGTGATAGAGGACTACCCTTATGCAGTTGATGGACTAGAAATATGGGATGCTATTAAGGCATGGGTCCAAGACTATGTCTCCTTATACTACCCAACAGACGAGGCAGTGCAAATAGACACTGAAATTCAAAAATGGTGGAAGGAAGCTGTAGAAAAGGGTCATGGTGACTTGAAAGACAAGCCATGGTGGCCAAAGATGCAAACTGTTCAAGACTTGGTTCAATCTTGCTCCATTATTATATGGACTGCTTCGGCTCTTCATGCAGCTGTTAACTTCGGACAATATCCTTACGGAGGATATATCCTGAACCGTCCAACAATTAGTAGAAGATTTATTCCGGAGCCAGGAACACCGGAATACGATGAGATGGTAAAAAGTCCTCAAAAGGCATATTTGAGAACTATTACACCAAAGTACCAAACCCTTGTTGATCTTTCTGTGATTGAGATATTGTCAAGACATGCGTCCGATGAAGTGTATCTTGGAGAGAATAATAACAAGTTTTGGACATCTGATGCAAGGGCAGTTCAAGCCTTCCAAAAGTTTGGAAGCAAACTATCTGAAATTGAAGGGAAAATTACCAAGAGGAACAATGAGTCTAGTTTGAGAAACCGCACCGGACCAGTGCAATTGCCATACACTTTGCTCCTTCGTTCAAGTGAAGAAGGTTTAACATTCAGAGGAATTCCCAACAGTATCTCTATTTAA
Protein sequence

>Msa1179140

MLGIFDKGQKIKGTVVLMPKNVLDFNAITSIGKGGVLDAAGNLIGGVTSIVGGVVDTATAFLGRNVSMQLISATKTDASGKGIVGKETFLSKHLPQLPTLGARQDAFSIFFEYDANFGIPGAFYIRNYTQAEFFLVRVTLEDIPNRGSVQFDCNSWVYNFKSYKNNRIFFTNDAYLPSQTPAPLNHFREEELQNLRGDGTGERKEWDRIYDYDVYNDLGNPDGGDALVRPILGGSSTHPYPRRVRSGRKPTRKDPKSEKPGVIYVPRDENFGHLKSSDFLMYGIKSLSQDVLPLLQSVIFDLNFTPNEFDSFDEVRGLFEGGIKLPTDILSQISPLPALKEILRTDGEQALKFPPPQVIRVSKSAWNTDEEFGREMLAGVNPNVIRLLQEFPPKSTLDATVYGDQNSTITKEHLETNLGDITVEEALNGKRLFLLDYHDAFMPYLERINLSAKAYATRTILFLQDDGTLKPLAIELSLPHSNGVQYGAESKVFLPAHEGVESTIWMLAKAHVIVNDSCYHQLMSHWLNTHAVMEPFIIATNRHLSVLHPIYKLLFPHYRDTININGLARQALINAGGIIEQTFCPGPNSIEISSAVYKNWVFTDQALPADLIKRGLAVEDPSSPHGLRLVIEDYPYAVDGLEIWDAIKAWVQDYVSLYYPTDEAVQIDTEIQKWWKEAVEKGHGDLKDKPWWPKMQTVQDLVQSCSIIIWTASALHAAVNFGQYPYGGYILNRPTISRRFIPEPGTPEYDEMVKSPQKAYLRTITPKYQTLVDLSVIEILSRHASDEVYLGENNNKFWTSDARAVQAFQKFGSKLSEIEGKITKRNNESSLRNRTGPVQLPYTLLLRSSEEGLTFRGIPNSISI*