AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1179190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179190 MtrunA17_Chr8g0342951 96.198 868 33 0 1 868 1 868 0.0 1712
Msa1179190 MtrunA17_Chr8g0342971 86.667 870 114 2 1 868 1 870 0.0 1585
Msa1179190 MtrunA17_Chr8g0344211 84.447 868 135 0 1 868 1 868 0.0 1528
Msa1179190 MtrunA17_Chr8g0343011 82.759 870 143 2 1 868 1 865 0.0 1500
Msa1179190 MtrunA17_Chr8g0342891 80.000 860 168 1 9 868 6 861 0.0 1466
Msa1179190 MtrunA17_Chr8g0342921 77.816 870 190 3 1 868 1 869 0.0 1425
Msa1179190 MtrunA17_Chr8g0342931 83.200 750 126 0 119 868 1 750 0.0 1323
Msa1179190 MtrunA17_Chr8g0342901 73.349 863 187 7 9 868 6 828 0.0 1305
Msa1179190 MtrunA17_Chr2g0329911 71.001 869 243 3 1 868 1 861 0.0 1290
Msa1179190 MtrunA17_Chr8g0342881 70.945 857 242 2 12 868 7 856 0.0 1274
Msa1179190 MtrunA17_Chr2g0329901 66.782 864 282 3 5 868 5 863 0.0 1203
Msa1179190 MtrunA17_Chr5g0406871 65.438 868 291 7 7 868 3 867 0.0 1190
Msa1179190 MtrunA17_Chr8g0343021 65.358 866 292 6 7 868 3 864 0.0 1187
Msa1179190 MtrunA17_Chr8g0343031 64.442 869 293 6 8 868 5 865 0.0 1166
Msa1179190 MtrunA17_Chr3g0120071 64.311 863 298 5 8 868 4 858 0.0 1160
Msa1179190 MtrunA17_Chr8g0343001 64.452 858 243 8 14 868 9 807 0.0 1122
Msa1179190 MtrunA17_Chr8g0342991 64.843 859 238 10 14 868 9 807 0.0 1116
Msa1179190 MtrunA17_Chr8g0342981 64.355 822 248 10 62 868 32 823 0.0 1058
Msa1179190 MtrunA17_Chr1g0191921 57.919 865 330 7 14 868 18 858 0.0 1011
Msa1179190 MtrunA17_Chr7g0272791 56.863 867 338 9 15 868 24 867 0.0 1004
Msa1179190 MtrunA17_Chr1g0205611 55.913 871 344 9 15 868 9 856 0.0 1000
Msa1179190 MtrunA17_Chr8g0344241 86.329 395 54 0 474 868 67 461 0.0 728
Msa1179190 MtrunA17_Chr8g0344241 81.667 60 11 0 294 353 9 68 2.00e-23 104
Msa1179190 MtrunA17_Chr8g0344201 46.041 821 426 11 57 867 113 926 0.0 723
Msa1179190 MtrunA17_Chr3g0118651 43.011 837 434 15 53 868 89 903 0.0 656
Msa1179190 MtrunA17_Chr8g0338451 42.649 823 427 12 56 851 46 850 0.0 650
Msa1179190 MtrunA17_Chr8g0377101 42.399 842 445 17 50 868 92 916 0.0 640
Msa1179190 MtrunA17_Chr3g0118641 42.169 830 451 16 53 868 88 902 0.0 634
Msa1179190 MtrunA17_Chr4g0033171 45.698 709 371 10 168 868 23 725 0.0 614
Msa1179190 MtrunA17_Chr4g0047281 40.667 809 440 11 67 865 114 892 0.0 600
Msa1179190 MtrunA17_Chr3g0118621 43.937 767 412 12 113 868 106 865 0.0 592
Msa1179190 MtrunA17_Chr6g0471951 40.864 509 255 6 322 826 11 477 1.90e-129 397
Msa1179190 MtrunA17_Chr7g0218231 61.538 117 44 1 522 637 16 132 5.49e-43 152
Msa1179190 MtrunA17_Chr6g0468081 56.180 89 38 1 550 637 1 89 1.04e-26 104
Msa1179190 MtrunA17_Chr4g0047271 39.560 91 55 0 777 867 1 91 2.15e-16 75.1
Msa1179190 MtrunA17_Chr3g0137991 36.800 125 63 3 744 868 1 109 9.57e-16 73.9
Msa1179190 MtrunA17_Chr7g0272781 42.857 63 35 1 760 822 8 69 2.25e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179190 AT1G55020.1 56.157 869 340 11 13 868 19 859 0.0 993
Msa1179190 AT3G22400.1 54.452 876 355 10 14 868 34 886 0.0 986
Msa1179190 AT1G72520.1 44.458 821 439 10 57 868 114 926 0.0 706
Msa1179190 AT1G17420.1 44.458 821 438 11 57 868 108 919 0.0 694
Msa1179190 AT3G45140.1 42.771 830 429 19 57 868 95 896 0.0 634
Msa1179190 AT3G45140.2 44.473 769 391 17 118 868 4 754 0.0 622
Msa1179190 AT1G67560.1 41.555 823 447 15 64 868 111 917 0.0 605

Find 239 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGTATCTCCATCTAAAA+TGG 0.167677 8_1:+12505885 Msa1179190:exon
TGTATCAAATGCAGCCTTAA+TGG 0.190018 8_1:+12506079 Msa1179190:three_prime_UTR
AGAATTTGACGAGCCAATTT+AGG 0.252836 8_1:-12503095 None:intergenic
TGTCTCATATGTTTCAAATA+TGG 0.260700 8_1:+12506121 Msa1179190:three_prime_UTR
AAGCTTCCACCATCCTTATA+TGG 0.290240 8_1:+12505412 Msa1179190:CDS
GTATGTACAATCTATTGTTT+TGG 0.298876 8_1:-12504200 None:intergenic
ATGCTGAACTCCAAGCATTC+TGG 0.305493 8_1:+12505307 Msa1179190:CDS
AAATTGGCTCGTCAAATTCT+TGG 0.307717 8_1:+12503098 Msa1179190:CDS
GCTTAAATGTATAATATCTT+AGG 0.309024 8_1:-12501181 None:intergenic
GCCTGACTCAAAACCTAAAT+TGG 0.309605 8_1:+12503082 Msa1179190:CDS
TATATACCTTGAATCACTTT+TGG 0.314352 8_1:-12503625 None:intergenic
CTTCATGCAGCTGTTAATTT+CGG 0.320964 8_1:+12505447 Msa1179190:CDS
CTTCTGATGGACTAGAGATA+TGG 0.326902 8_1:+12505214 Msa1179190:CDS
GCTTCAACACCTTCACTTGC+AGG 0.331689 8_1:-12504405 None:intergenic
CTTCCAAGAGATGAATCATT+TGG 0.339142 8_1:+12503355 Msa1179190:CDS
TTCCTGAAATAAAACCATTA+AGG 0.341476 8_1:-12506093 None:intergenic
TGCTCTTAGTTGGTCGGTTA+AGG 0.344383 8_1:-12505494 None:intergenic
TCAGTAAGAGTATCATTCTT+TGG 0.350791 8_1:-12505600 None:intergenic
AATTGGCTCGTCAAATTCTT+GGG 0.352014 8_1:+12503099 Msa1179190:CDS
TGCTTGGAGTTCAGCATCTT+GGG 0.354850 8_1:-12505301 None:intergenic
GAAGAGTTGAAGACTTTAAG+AGG 0.362440 8_1:+12502990 Msa1179190:CDS
GACAGTGACATGGGAATTCC+TGG 0.363962 8_1:+12502540 Msa1179190:CDS
GAAGGATAAAGCAAAGTATA+TGG 0.367622 8_1:-12505828 None:intergenic
CACCCTCAAGGTGATAGTTT+TGG 0.371667 8_1:+12504360 Msa1179190:CDS
ACAGTGACCCCACCCATGTT+TGG 0.379049 8_1:-12504024 None:intergenic
AAAGAGGCCTTCAAAAGGTT+TGG 0.380394 8_1:+12505720 Msa1179190:CDS
ACCCGCTCTTTCCATATTTG+AGG 0.383986 8_1:+12504235 Msa1179190:CDS
TTATGATGTCTACAATGATT+TGG 0.388585 8_1:+12503055 Msa1179190:CDS
GTTCTTCCCCTTCGAGGGTA+AGG 0.388654 8_1:-12503137 None:intergenic
TCCACTTTGTTTGCAACTCA+TGG 0.389443 8_1:+12502646 Msa1179190:CDS
GTGCTGAAGCAATCCATATA+AGG 0.392721 8_1:-12505425 None:intergenic
TTGTCCTCAAATAAGACTTC+TGG 0.394515 8_1:-12505572 None:intergenic
CATTCGTCATAGCAACAAAT+AGG 0.394550 8_1:+12504611 Msa1179190:CDS
GACACTGCCACTTCCTTCTT+AGG 0.397476 8_1:+12501382 Msa1179190:CDS
CAAGTTCTTTCCAGAATGCT+TGG 0.398414 8_1:-12505317 None:intergenic
AAGGTGTTGAAGCTTCTATT+TGG 0.398527 8_1:+12504415 Msa1179190:CDS
CTGCTGTTGTTTACAAGGAT+TGG 0.398565 8_1:+12504785 Msa1179190:CDS
AGTTCCTTGAACAATGGTAT+TGG 0.400202 8_1:-12503562 None:intergenic
AGCATTAAAGATGACTTCAT+TGG 0.402361 8_1:+12501201 Msa1179190:exon
ATGCTTGGAGTTCAGCATCT+TGG 0.411699 8_1:-12505302 None:intergenic
CAAAAGGTTTGGAAAGAAGT+TGG 0.414172 8_1:+12505731 Msa1179190:CDS
CACCATAACTAAAGAAAACT+TGG 0.414273 8_1:+12503999 Msa1179190:CDS
TATGATGTCTACAATGATTT+GGG 0.419822 8_1:+12503056 Msa1179190:CDS
GTCAATCCTTCCTCACTAGA+AGG 0.421532 8_1:-12505846 None:intergenic
CTTGTGGGGAAATTATGCTT+TGG 0.426043 8_1:+12504756 Msa1179190:CDS
GGCAAGTAAACATTGCTAAC+AGG 0.427564 8_1:-12504384 None:intergenic
TTATAGTAGTTGATGAGATT+AGG 0.428042 8_1:-12501109 None:intergenic
CTGCCGGTTCTTCCCCTTCG+AGG 0.429096 8_1:-12503143 None:intergenic
ATGATGAGACATTGAGAAAT+CGG 0.436789 8_1:+12505787 Msa1179190:CDS
TTTGCAAGGGAGATGATTGC+TGG 0.437702 8_1:+12503775 Msa1179190:CDS
TCTTGTCTATAGTACACTAA+TGG 0.438231 8_1:-12502969 None:intergenic
GGAAGCAAGAGTTTATGAAT+AGG 0.438914 8_1:-12504652 None:intergenic
TTCTATTTGGCTCCTTGCCA+AGG 0.442825 8_1:+12504428 Msa1179190:CDS
GGTGCTATTGGTGATGTTGC+TGG 0.444661 8_1:+12501349 Msa1179190:CDS
TACCCTCGAAGGGGAAGAAC+CGG 0.444987 8_1:+12503140 Msa1179190:CDS
AAGGCTGCATTTGATACAAC+AGG 0.447930 8_1:-12506074 None:intergenic
TGTCCAAATGATTCATCTCT+TGG 0.449045 8_1:-12503358 None:intergenic
CCACCACCAAAAGTGATTCA+AGG 0.452144 8_1:+12503619 Msa1179190:CDS
TCTAGTCCATCAGAAGCATA+AGG 0.453457 8_1:-12505207 None:intergenic
ACAATGGTATTGGACTAATC+TGG 0.453552 8_1:-12503552 None:intergenic
ATTATCTTGCAAGAAAAGAA+TGG 0.455567 8_1:-12504298 None:intergenic
TTTGAAACATATGAGACAAC+TGG 0.456243 8_1:-12506116 None:intergenic
GGACTTCGAGTCTCACTGTT+AGG 0.459026 8_1:-12503322 None:intergenic
GAAGCAAGAGTTTATGAATA+GGG 0.463724 8_1:-12504651 None:intergenic
ATAGTATCTCCATCTAAAAT+GGG 0.465844 8_1:+12505886 Msa1179190:exon
TAGTCCAATACCATTGTTCA+AGG 0.470489 8_1:+12503558 Msa1179190:CDS
GGAACTGGAAAAGGAAAAGT+TGG 0.470758 8_1:+12502432 Msa1179190:intron
CAAAGCCCTACTGGTATCAT+TGG 0.470844 8_1:+12501316 Msa1179190:CDS
AAGTGGATGGATCCATGGTT+TGG 0.473548 8_1:-12502630 None:intergenic
TTAAGGATGTATCCTCCATA+TGG 0.474573 8_1:-12505477 None:intergenic
CTTTATCCTTCTAGTGAGGA+AGG 0.474629 8_1:+12505840 Msa1179190:CDS
ACTTTAAGAGGGGATGGAAC+AGG 0.476377 8_1:+12503002 Msa1179190:CDS
CGGAGACCGGTAGGAGAAGC+TGG 0.477572 8_1:-12505165 None:intergenic
GGTGGTGCCATAGGTGCTAT+TGG 0.479135 8_1:+12501337 Msa1179190:CDS
TATAGAATCAACCTTCTTGT+GGG 0.479963 8_1:+12504741 Msa1179190:CDS
TTTGTCTCCCAATGTTGGTA+TGG 0.481893 8_1:-12502487 None:intergenic
TACTCAGGTGATCCTTTCTC+AGG 0.482761 8_1:-12505528 None:intergenic
AACAGGAGAGCGCAAGGAAT+GGG 0.484527 8_1:+12503019 Msa1179190:CDS
CTCTATCAAAAGGCGGAGAC+CGG 0.488725 8_1:-12505178 None:intergenic
TACCTAACGATCTAATCAAA+AGG 0.492464 8_1:+12504827 Msa1179190:CDS
AAAGTATATGGCATCTTCAC+TGG 0.496464 8_1:-12505816 None:intergenic
GTGTGGCCTGCTTAGTTCAA+TGG 0.497006 8_1:-12504340 None:intergenic
AATTTCGGACAATACCCATA+TGG 0.497019 8_1:+12505462 Msa1179190:CDS
AATGGAGCCGGTGTTTCACT+TGG 0.497543 8_1:-12502951 None:intergenic
CTTACCTCCATACCAACATT+GGG 0.499072 8_1:+12502480 Msa1179190:CDS
AGCATAATTTCCCCACAAGA+AGG 0.499126 8_1:-12504752 None:intergenic
AAGAGTTGAAGACTTTAAGA+GGG 0.499352 8_1:+12502991 Msa1179190:CDS
ACTGCAGCTCAAAGCCCTAC+TGG 0.500476 8_1:+12501307 Msa1179190:CDS
AACATCACCAATAGCACCTA+TGG 0.501370 8_1:-12501344 None:intergenic
GAGGATCCAGCTTCTCCTAC+CGG 0.502267 8_1:+12505159 Msa1179190:CDS
AGCTATAGAACGGCCTAAGA+AGG 0.502528 8_1:-12501395 None:intergenic
TGCCGGTTCTTCCCCTTCGA+GGG 0.503677 8_1:-12503142 None:intergenic
AATGTCTGCTGTTGTTTACA+AGG 0.504818 8_1:+12504780 Msa1179190:CDS
CTAGTCCATCAGAAGCATAA+GGG 0.505005 8_1:-12505206 None:intergenic
ATTACCAGAAGTCTTATTTG+AGG 0.507445 8_1:+12505568 Msa1179190:CDS
TACTGACTTGACTATTATAG+AGG 0.511355 8_1:+12505617 Msa1179190:CDS
TCTTGAAAGGTGTTAAACTC+GGG 0.511572 8_1:-12503478 None:intergenic
ATAATAACATGATCGTAAGT+AGG 0.511721 8_1:-12505969 None:intergenic
TTCTGATACACAACCAAAAG+AGG 0.512590 8_1:+12505704 Msa1179190:CDS
TTGAAGACTTTAAGAGGGGA+TGG 0.514199 8_1:+12502996 Msa1179190:CDS
TCTTACCTCCATACCAACAT+TGG 0.515526 8_1:+12502479 Msa1179190:CDS
GGTATCATTGGTGGTGCCAT+AGG 0.517163 8_1:+12501328 Msa1179190:CDS
TTCTGATGGACTAGAGATAT+GGG 0.518166 8_1:+12505215 Msa1179190:CDS
TACCTCGGAGATAGAGTTGA+AGG 0.518860 8_1:+12505669 Msa1179190:CDS
CACTGGCCATTGAACTAAGC+AGG 0.519121 8_1:+12504334 Msa1179190:CDS
AAGGGTAGTCCTCTATCAAA+AGG 0.519286 8_1:-12505188 None:intergenic
AACCAAAAGAGGCCTTCAAA+AGG 0.520413 8_1:+12505715 Msa1179190:CDS
ATCATCAACTTGTCAGCCAT+TGG 0.520836 8_1:+12504478 Msa1179190:CDS
GACCAAAACTATCACCTTGA+GGG 0.520938 8_1:-12504362 None:intergenic
TGGAAAAGGAAAAGTTGGAC+AGG 0.521456 8_1:+12502437 Msa1179190:CDS
AGGAGATTCATGCCTGAGAA+AGG 0.521841 8_1:+12505516 Msa1179190:CDS
GAACAGGAGAGCGCAAGGAA+TGG 0.522042 8_1:+12503018 Msa1179190:CDS
TTCTTCCCCTTCGAGGGTAA+GGG 0.526455 8_1:-12503136 None:intergenic
AGAAAACTTGGAGCCAAACA+TGG 0.527594 8_1:+12504011 Msa1179190:CDS
GCTGACAAGTTGATGATAGC+AGG 0.527862 8_1:-12504472 None:intergenic
TTATAGAATCAACCTTCTTG+TGG 0.528486 8_1:+12504740 Msa1179190:CDS
TGCACTTGCACGAAATGTCT+TGG 0.528941 8_1:+12504702 Msa1179190:CDS
ATGAATCTCCTGCTCTTAGT+TGG 0.532018 8_1:-12505504 None:intergenic
ACAATGTATTAGTTCAAAAG+AGG 0.533299 8_1:-12501083 None:intergenic
ATCTCCTGCTCTTAGTTGGT+CGG 0.534361 8_1:-12505500 None:intergenic
GATTGGAATTTCATTGAGCA+AGG 0.534618 8_1:+12504802 Msa1179190:CDS
AGCCCTACTGGTATCATTGG+TGG 0.535542 8_1:+12501319 Msa1179190:CDS
ATCTTGAAAGGTGTTAAACT+CGG 0.539742 8_1:-12503479 None:intergenic
GCTTGTGTCTTGTAACCATA+GGG 0.540521 8_1:-12501144 None:intergenic
TCCTCAAATATGGAAAGAGC+GGG 0.540806 8_1:-12504236 None:intergenic
GACTACCCTTATGCTTCTGA+TGG 0.541565 8_1:+12505201 Msa1179190:CDS
CGATTTCCCTTACCCTCGAA+GGG 0.541927 8_1:+12503130 Msa1179190:CDS
CGGAAAAGTTCCTTGAACAA+TGG 0.542049 8_1:-12503568 None:intergenic
CTATTTGTTGCTATGACGAA+TGG 0.543162 8_1:-12504610 None:intergenic
AAACTATCACCTTGAGGGTG+TGG 0.543185 8_1:-12504357 None:intergenic
TAATGGAACTTTGAAGCCAC+TGG 0.543868 8_1:+12504317 Msa1179190:CDS
ATTTACAACAACAAAAGCCT+TGG 0.548619 8_1:-12504445 None:intergenic
AAGAATGGTTCTAGTAGCAT+AGG 0.548654 8_1:-12504283 None:intergenic
CCGCATCTTCTTTGCCAACA+AGG 0.548836 8_1:+12502698 Msa1179190:CDS
TAAATACGAACCATTCCCTA+TGG 0.550679 8_1:+12501129 Msa1179190:five_prime_UTR
TGTCTTGTAACCATAGGGAA+TGG 0.551576 8_1:-12501139 None:intergenic
TCTCTTTGATAAGCACGAAA+AGG 0.553585 8_1:+12501231 Msa1179190:CDS
AAACAAAGTGGATGGATCCA+TGG 0.554216 8_1:-12502635 None:intergenic
GAGTTCAGCATCTTGGGCAA+TGG 0.556802 8_1:-12505295 None:intergenic
GGATGGAACAGGAGAGCGCA+AGG 0.559613 8_1:+12503013 Msa1179190:CDS
TACATCAAGAATTATATGCA+AGG 0.560399 8_1:+12502570 Msa1179190:CDS
ATAGAGTTGAAGGTGACGAT+TGG 0.562601 8_1:+12505679 Msa1179190:CDS
TAAGGATGTATCCTCCATAT+GGG 0.562903 8_1:-12505476 None:intergenic
CATCAGTCTGCCATGCAGAA+TGG 0.563367 8_1:-12503747 None:intergenic
GCTGCTATCAAGACATGGGT+TGG 0.566416 8_1:+12505237 Msa1179190:CDS
CTGCTTAGTTCAATGGCCAG+TGG 0.566870 8_1:-12504333 None:intergenic
CAAATGATTCATCTCTTGGA+AGG 0.568278 8_1:-12503354 None:intergenic
ACTTGGAGCCAAACATGGGT+GGG 0.569230 8_1:+12504016 Msa1179190:CDS
CTATAGTACACTAATGGAGC+CGG 0.569261 8_1:-12502963 None:intergenic
TGAGTTGCAAACAAAGTGGA+TGG 0.569767 8_1:-12502643 None:intergenic
GCGATTTCCCTTACCCTCGA+AGG 0.569933 8_1:+12503129 Msa1179190:CDS
GTCTCCCAATGTTGGTATGG+AGG 0.572486 8_1:-12502484 None:intergenic
ATTGGCTCGTCAAATTCTTG+GGG 0.573165 8_1:+12503100 Msa1179190:CDS
AGAGTTGAAGACTTTAAGAG+GGG 0.573240 8_1:+12502992 Msa1179190:CDS
TGCTTGTGTCTTGTAACCAT+AGG 0.574107 8_1:-12501145 None:intergenic
ATTTAGAGGAGTAGCTGTTG+AGG 0.574648 8_1:+12505140 Msa1179190:intron
GAGAGAGCGCACATCTTGAA+AGG 0.575061 8_1:-12503491 None:intergenic
AGAACGGCCTAAGAAGGAAG+TGG 0.575241 8_1:-12501389 None:intergenic
AACTTGGAGCCAAACATGGG+TGG 0.576306 8_1:+12504015 Msa1179190:CDS
TTGCAAGGGAGATGATTGCT+GGG 0.576355 8_1:+12503776 Msa1179190:CDS
AAGATGACTTCATTGGTGAA+AGG 0.578712 8_1:+12501208 Msa1179190:exon
AATAAATGCAAGTGAGACAA+AGG 0.579607 8_1:+12504260 Msa1179190:CDS
TGAGTATGATGAGCTTGCTA+AGG 0.580212 8_1:+12505545 Msa1179190:CDS
TCCATGAGTTGCAAACAAAG+TGG 0.581030 8_1:-12502647 None:intergenic
TGATAAGCACGAAAAGGTGA+AGG 0.581687 8_1:+12501237 Msa1179190:CDS
TTCCTCAAATATGGAAAGAG+CGG 0.581997 8_1:-12504237 None:intergenic
GAGCCGGTGTTTCACTTGGA+AGG 0.583942 8_1:-12502947 None:intergenic
CTTGGAGCCAAACATGGGTG+GGG 0.584070 8_1:+12504017 Msa1179190:CDS
GAGACATTGAGAAATCGGTA+TGG 0.584445 8_1:+12505792 Msa1179190:CDS
TGATCGTAAGTAGGAAGTGA+GGG 0.591353 8_1:-12505960 None:intergenic
ATCAAAAGGCGGAGACCGGT+AGG 0.591937 8_1:-12505174 None:intergenic
GTAACTACAGATCTCAATTG+AGG 0.593972 8_1:-12503439 None:intergenic
TCTCCATCTAAAATGGGTCA+TGG 0.594032 8_1:+12505892 Msa1179190:exon
ATGATCGTAAGTAGGAAGTG+AGG 0.594524 8_1:-12505961 None:intergenic
GCACCACCAATGATACCAGT+AGG 0.595832 8_1:-12501322 None:intergenic
CTTCAAGTGTCAAACTCACA+AGG 0.596098 8_1:-12502602 None:intergenic
GGACAGGAAACATTTCTGAA+AGG 0.599176 8_1:+12502453 Msa1179190:CDS
GAACTTGTAGAGGTCGGTCA+TGG 0.600852 8_1:+12505333 Msa1179190:CDS
CAACAACAAAAGCCTTGGCA+AGG 0.602926 8_1:-12504440 None:intergenic
TTTGAATGGGACAGTGACAT+GGG 0.604319 8_1:+12502531 Msa1179190:CDS
TTCATTGTGTCACGATAATG+TGG 0.604329 8_1:-12504673 None:intergenic
CTAAGCAGGCCACACCCTCA+AGG 0.605346 8_1:+12504348 Msa1179190:CDS
ACTTTGAATAACAGATGAGA+AGG 0.605824 8_1:+12505928 Msa1179190:three_prime_UTR
TTAGCAAGCTCATCATACTC+AGG 0.608098 8_1:-12505543 None:intergenic
CTTGAAGATATTCCAAACCA+TGG 0.608577 8_1:+12502618 Msa1179190:CDS
GTGCTTGTTCACCATCAGAT+CGG 0.610157 8_1:-12503588 None:intergenic
GACTGATGAGGAATTTGCAA+GGG 0.610600 8_1:+12503762 Msa1179190:CDS
ATAGAATCAACCTTCTTGTG+GGG 0.611257 8_1:+12504742 Msa1179190:CDS
CTTGAAAGGTGTTAAACTCG+GGG 0.611801 8_1:-12503477 None:intergenic
TTGAACAGAAACTCACTCAA+AGG 0.613745 8_1:+12505760 Msa1179190:CDS
AGATACTATTAGGAATGCCT+CGG 0.614836 8_1:-12505872 None:intergenic
AACAAATAGGCATCTTAGTG+TGG 0.616014 8_1:+12504624 Msa1179190:CDS
TTAACCGACCAACTAAGAGC+AGG 0.616853 8_1:+12505496 Msa1179190:CDS
TTGGCTCGTCAAATTCTTGG+GGG 0.619384 8_1:+12503101 Msa1179190:CDS
AAATGTCTTGGTCAATGCAG+AGG 0.620032 8_1:+12504714 Msa1179190:CDS
TATGGGCTGCTATCAAGACA+TGG 0.620662 8_1:+12505232 Msa1179190:CDS
AATATGGAAAGAGCGGGTCG+TGG 0.621020 8_1:-12504230 None:intergenic
GAGGAAGGATTGACTTGCCG+AGG 0.621733 8_1:+12505855 Msa1179190:CDS
TGGAAAGAACTTGTAGAGGT+CGG 0.622722 8_1:+12505327 Msa1179190:CDS
AGCAATCCATATAAGGATGG+TGG 0.623898 8_1:-12505418 None:intergenic
ATTAGTGCTACAAGTGCTGA+TGG 0.624947 8_1:+12501427 Msa1179190:CDS
AGACTGATGAGGAATTTGCA+AGG 0.627020 8_1:+12503761 Msa1179190:CDS
GATAAGCACGAAAAGGTGAA+GGG 0.628987 8_1:+12501238 Msa1179190:CDS
AATGTCTTGGTCAATGCAGA+GGG 0.629733 8_1:+12504715 Msa1179190:CDS
TTCTGCATGGCAGACTGATG+AGG 0.631772 8_1:+12503750 Msa1179190:CDS
GTTTACTTGCCTGCAAGTGA+AGG 0.632524 8_1:+12504396 Msa1179190:CDS
GTGCGCTCTCTCTACGAGGG+TGG 0.634384 8_1:+12503502 Msa1179190:CDS
TTTGCTTTATCCTTCTAGTG+AGG 0.634771 8_1:+12505836 Msa1179190:CDS
CCTTGTTGGCAAAGAAGATG+CGG 0.636835 8_1:-12502698 None:intergenic
TCAACTTGAGAGCTATAGAA+CGG 0.637447 8_1:-12501405 None:intergenic
GTTTAAGATGCAAACTCGTG+AGG 0.640174 8_1:+12505380 Msa1179190:CDS
ATCTGGCTTAGTACATCAGT+AGG 0.640323 8_1:-12503535 None:intergenic
CACCACCAATGATACCAGTA+GGG 0.641870 8_1:-12501321 None:intergenic
TGAAGCAATCCATATAAGGA+TGG 0.642489 8_1:-12505421 None:intergenic
AGATGTGCGCTCTCTCTACG+AGG 0.646720 8_1:+12503498 Msa1179190:CDS
GAATGGCTCAACAACAGCGT+GGG 0.647696 8_1:-12504593 None:intergenic
ATACCTTCCAAGTGAAACAC+CGG 0.647734 8_1:+12502944 Msa1179190:CDS
GAAAACTTGGAGCCAAACAT+GGG 0.647756 8_1:+12504012 Msa1179190:CDS
GGACCAAAACTATCACCTTG+AGG 0.648019 8_1:-12504363 None:intergenic
AACAGGACTAGAATGTTACA+AGG 0.650048 8_1:-12506057 None:intergenic
TCTCTTGGAAGGTAAACAGT+GGG 0.653344 8_1:-12503343 None:intergenic
GCTTCTGATGAGCAATACCT+CGG 0.654024 8_1:+12505654 Msa1179190:CDS
TTCGGACAATACCCATATGG+AGG 0.658621 8_1:+12505465 Msa1179190:CDS
CTATTATAGAGGTCTTGTCA+AGG 0.661444 8_1:+12505628 Msa1179190:CDS
ATCTCTTGGAAGGTAAACAG+TGG 0.662459 8_1:-12503344 None:intergenic
GTTGGCAAAGAAGATGCGGT+CGG 0.663469 8_1:-12502694 None:intergenic
ATGGGCTGCTATCAAGACAT+GGG 0.667186 8_1:+12505233 Msa1179190:CDS
GAACAGTGGACCATTCTGCA+TGG 0.669132 8_1:+12503737 Msa1179190:intron
ATTCTGGAAAGAACTTGTAG+AGG 0.670411 8_1:+12505323 Msa1179190:CDS
CACCTTCAACTCTATCTCCG+AGG 0.673679 8_1:-12505671 None:intergenic
CGAAAAGGTGAAGGGAACTG+TGG 0.680100 8_1:+12501246 Msa1179190:CDS
GATGTGCGCTCTCTCTACGA+GGG 0.685367 8_1:+12503499 Msa1179190:CDS
GATTTCCCTTACCCTCGAAG+GGG 0.685881 8_1:+12503131 Msa1179190:CDS
CGAATGGCTCAACAACAGCG+TGG 0.695039 8_1:-12504594 None:intergenic
GGTAGTCCTCTATCAAAAGG+CGG 0.702248 8_1:-12505185 None:intergenic
ACTTAAAGAATGCCACATGG+TGG 0.703250 8_1:+12505358 Msa1179190:CDS
TTGCATCTTAAACCACCATG+TGG 0.713418 8_1:-12505370 None:intergenic
TGCAAGGGAGATGATTGCTG+GGG 0.719674 8_1:+12503777 Msa1179190:CDS
GTGACTTAAAGAATGCCACA+TGG 0.775897 8_1:+12505355 Msa1179190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATATTGAAAAAGAT+TGG - chr8_1:12501938-12501957 None:intergenic 10.0%
!!! AAATAATTTCAATATTTTAG+TGG - chr8_1:12502252-12502271 None:intergenic 10.0%
!!! TTTTGTATGAAATATATTAT+TGG - chr8_1:12503673-12503692 None:intergenic 10.0%
!!! TTTTTAATTAAACTAATGGT+TGG + chr8_1:12501482-12501501 Msa1179190:intron 15.0%
!! TGCATAATATAATATATGTA+GGG - chr8_1:12501562-12501581 None:intergenic 15.0%
!! TTGCATAATATAATATATGT+AGG - chr8_1:12501563-12501582 None:intergenic 15.0%
!! ATATATCTACTGTATATTAA+AGG + chr8_1:12501665-12501684 Msa1179190:intron 15.0%
!! TTCAAATATAAAGAAATAGA+GGG - chr8_1:12501878-12501897 None:intergenic 15.0%
!!! CTCTTAATAGATTTTAAAAT+TGG + chr8_1:12501903-12501922 Msa1179190:intron 15.0%
!!! AATACTGACAATTAAAATTT+TGG - chr8_1:12502073-12502092 None:intergenic 15.0%
!!! ATATTGGTTATAAAATAATC+AGG + chr8_1:12502214-12502233 Msa1179190:intron 15.0%
!!! TTTCAGTATTAATTTTGAAT+GGG + chr8_1:12502518-12502537 Msa1179190:CDS 15.0%
!! GCTTAAATGTATAATATCTT+AGG - chr8_1:12501184-12501203 None:intergenic 20.0%
!! ATAAAAAATGAGAAAGAGAA+AGG - chr8_1:12501461-12501480 None:intergenic 20.0%
!! GCATAATATAATATATGTAG+GGG - chr8_1:12501561-12501580 None:intergenic 20.0%
!! AGAAATAAATAGAGTGAAAA+AGG - chr8_1:12501617-12501636 None:intergenic 20.0%
!!! ATTTTGTCATTTGGTATAAA+TGG + chr8_1:12501774-12501793 Msa1179190:intron 20.0%
!! GTTCAAATATAAAGAAATAG+AGG - chr8_1:12501879-12501898 None:intergenic 20.0%
!! CCTATAAAAATGTCAAAAAT+TGG - chr8_1:12502414-12502433 None:intergenic 20.0%
!!! CCAATTTTTGACATTTTTAT+AGG + chr8_1:12502411-12502430 Msa1179190:intron 20.0%
!!! CTTTCAGTATTAATTTTGAA+TGG + chr8_1:12502517-12502536 Msa1179190:CDS 20.0%
!!! AATTTTTATTCTTACCTTGT+TGG - chr8_1:12502715-12502734 None:intergenic 20.0%
!!! TCATTCAAAATATCAAGTTT+TGG - chr8_1:12502908-12502927 None:intergenic 20.0%
!! GTATGAAATATATTATTGGT+AGG - chr8_1:12503669-12503688 None:intergenic 20.0%
!! AATCATATATAGAAAGCTAA+TGG + chr8_1:12503691-12503710 Msa1179190:intron 20.0%
!!! TTTATAATTGGTGACATTAT+TGG + chr8_1:12503905-12503924 Msa1179190:intron 20.0%
!! AACTTATAATTTCTGTTAGA+CGG + chr8_1:12505008-12505027 Msa1179190:intron 20.0%
!!! CTTTTTTACAACTGTTTTAA+AGG - chr8_1:12505044-12505063 None:intergenic 20.0%
! ACAATGTATTAGTTCAAAAG+AGG - chr8_1:12501086-12501105 None:intergenic 25.0%
!!! TTATAGTAGTTGATGAGATT+AGG - chr8_1:12501112-12501131 None:intergenic 25.0%
! ATTAAAGGTAGTATAGCTAA+TGG + chr8_1:12501680-12501699 Msa1179190:intron 25.0%
! TCCAATAAGTGTGATATATT+TGG + chr8_1:12501726-12501745 Msa1179190:intron 25.0%
!! GGACTTTATATTTTGTCATT+TGG + chr8_1:12501765-12501784 Msa1179190:intron 25.0%
!! TGGCAAATTTTAAATAGCTA+TGG - chr8_1:12501854-12501873 None:intergenic 25.0%
! AATATAAAGAAATAGAGGGA+TGG - chr8_1:12501874-12501893 None:intergenic 25.0%
! TGAAAACAAAAGAGAGAATA+AGG - chr8_1:12502159-12502178 None:intergenic 25.0%
! GTGACTTTAATGTAGAATAT+TGG + chr8_1:12502198-12502217 Msa1179190:intron 25.0%
! TCTAGTCTAGTTATATGAAA+GGG - chr8_1:12502275-12502294 None:intergenic 25.0%
!! TTTGACATTTTTATAGGAAC+TGG + chr8_1:12502417-12502436 Msa1179190:intron 25.0%
!! ATTTTTATAGGAACTGGAAA+AGG + chr8_1:12502423-12502442 Msa1179190:intron 25.0%
! TACATCAAGAATTATATGCA+AGG + chr8_1:12502570-12502589 Msa1179190:CDS 25.0%
! TTATGATGTCTACAATGATT+TGG + chr8_1:12503055-12503074 Msa1179190:CDS 25.0%
! TATGATGTCTACAATGATTT+GGG + chr8_1:12503056-12503075 Msa1179190:CDS 25.0%
! AAGAAAAACTAAAACAGGTT+AGG + chr8_1:12503166-12503185 Msa1179190:intron 25.0%
!!! AATCTTTAGAATCATAAGCT+AGG - chr8_1:12503254-12503273 None:intergenic 25.0%
!!! GCTTATGATTCTAAAGATTT+TGG + chr8_1:12503255-12503274 Msa1179190:intron 25.0%
!! TATATACCTTGAATCACTTT+TGG - chr8_1:12503628-12503647 None:intergenic 25.0%
! AATATATTATTGGTAGGACT+AGG - chr8_1:12503663-12503682 None:intergenic 25.0%
! AAATTTCTTACTATGAACAG+TGG + chr8_1:12503723-12503742 Msa1179190:intron 25.0%
!!! GTTTTTTTTTCTTTCCAAAG+TGG + chr8_1:12504078-12504097 Msa1179190:intron 25.0%
!! GTATGTACAATCTATTGTTT+TGG - chr8_1:12504203-12504222 None:intergenic 25.0%
!!! GCATTTATTTTCCTCAAATA+TGG - chr8_1:12504249-12504268 None:intergenic 25.0%
! ATTATCTTGCAAGAAAAGAA+TGG - chr8_1:12504301-12504320 None:intergenic 25.0%
!! ATTCTTTTCTTGCAAGATAA+TGG + chr8_1:12504300-12504319 Msa1179190:CDS 25.0%
! ATTAATGAAATTCGTACCAA+TGG - chr8_1:12504497-12504516 None:intergenic 25.0%
!! TTCATGGATTAATCATAGAT+AGG - chr8_1:12504547-12504566 None:intergenic 25.0%
! ACTTATAATTTCTGTTAGAC+GGG + chr8_1:12505009-12505028 Msa1179190:intron 25.0%
!! CACACAAACAATATGTTTTA+GGG - chr8_1:12505097-12505116 None:intergenic 25.0%
!! ACACACAAACAATATGTTTT+AGG - chr8_1:12505098-12505117 None:intergenic 25.0%
!! TTTTAGATGGAGATACTATT+AGG - chr8_1:12505885-12505904 None:intergenic 25.0%
! AATAGTATCTCCATCTAAAA+TGG + chr8_1:12505885-12505904 Msa1179190:exon 25.0%
!! ATAGTATCTCCATCTAAAAT+GGG + chr8_1:12505886-12505905 Msa1179190:exon 25.0%
! ATAATAACATGATCGTAAGT+AGG - chr8_1:12505972-12505991 None:intergenic 25.0%
! TTCCTGAAATAAAACCATTA+AGG - chr8_1:12506096-12506115 None:intergenic 25.0%
! TGTCTCATATGTTTCAAATA+TGG + chr8_1:12506121-12506140 Msa1179190:three_prime_UTR 25.0%
AGCATTAAAGATGACTTCAT+TGG + chr8_1:12501201-12501220 Msa1179190:exon 30.0%
! ATTTTAAACGTGGAGAAGTA+GGG + chr8_1:12501514-12501533 Msa1179190:intron 30.0%
GCCAAATATATCACACTTAT+TGG - chr8_1:12501730-12501749 None:intergenic 30.0%
AGGTAAATCTTAATGAGTTG+CGG - chr8_1:12502139-12502158 None:intergenic 30.0%
GTCTAGTCTAGTTATATGAA+AGG - chr8_1:12502276-12502295 None:intergenic 30.0%
TCATATAACTAGACTAGACT+AGG + chr8_1:12502277-12502296 Msa1179190:intron 30.0%
TGACCAAGTAAAACGATAAA+TGG + chr8_1:12502306-12502325 Msa1179190:intron 30.0%
! GATCCATTTATCGTTTTACT+TGG - chr8_1:12502312-12502331 None:intergenic 30.0%
!! GTTTTTAGAAATGTGTGTAG+AGG + chr8_1:12502786-12502805 Msa1179190:intron 30.0%
GCTATATAGCTATGATAAAG+TGG - chr8_1:12502868-12502887 None:intergenic 30.0%
TCTTGTCTATAGTACACTAA+TGG - chr8_1:12502972-12502991 None:intergenic 30.0%
! AAGAGTTGAAGACTTTAAGA+GGG + chr8_1:12502991-12503010 Msa1179190:CDS 30.0%
!!! TGTTTTAGTTTTTCTTCTGC+CGG - chr8_1:12503162-12503181 None:intergenic 30.0%
CAACCAAAAAACACATGTTT+AGG - chr8_1:12503218-12503237 None:intergenic 30.0%
!! ATCTTGAAAGGTGTTAAACT+CGG - chr8_1:12503482-12503501 None:intergenic 30.0%
ACACATCATCAAAAAACTCT+CGG + chr8_1:12503807-12503826 Msa1179190:CDS 30.0%
!!! TTGGTTGCTACTTTTAATTC+AGG + chr8_1:12503924-12503943 Msa1179190:intron 30.0%
AAGCTAGATAGCCAAAAATT+TGG + chr8_1:12503964-12503983 Msa1179190:CDS 30.0%
!!! TGGTGTTATCACCAAATTTT+TGG - chr8_1:12503978-12503997 None:intergenic 30.0%
CACCATAACTAAAGAAAACT+TGG + chr8_1:12503999-12504018 Msa1179190:CDS 30.0%
! CTCCAAGTTTTCTTTAGTTA+TGG - chr8_1:12504004-12504023 None:intergenic 30.0%
AATAAATGCAAGTGAGACAA+AGG + chr8_1:12504260-12504279 Msa1179190:CDS 30.0%
ATTTACAACAACAAAAGCCT+TGG - chr8_1:12504448-12504467 None:intergenic 30.0%
GAAGCAAGAGTTTATGAATA+GGG - chr8_1:12504654-12504673 None:intergenic 30.0%
TTATAGAATCAACCTTCTTG+TGG + chr8_1:12504740-12504759 Msa1179190:CDS 30.0%
TATAGAATCAACCTTCTTGT+GGG + chr8_1:12504741-12504760 Msa1179190:CDS 30.0%
TACCTAACGATCTAATCAAA+AGG + chr8_1:12504827-12504846 Msa1179190:CDS 30.0%
!! TACCTTTTGATTAGATCGTT+AGG - chr8_1:12504832-12504851 None:intergenic 30.0%
AAAAGGTAACCTTACATCTT+TGG + chr8_1:12504844-12504863 Msa1179190:intron 30.0%
! TTTTACTGACCAAAGATGTA+AGG - chr8_1:12504856-12504875 None:intergenic 30.0%
! CATAATCTTTTACGTTCATG+TGG + chr8_1:12504904-12504923 Msa1179190:intron 30.0%
!! ATTACCAGAAGTCTTATTTG+AGG + chr8_1:12505568-12505587 Msa1179190:CDS 30.0%
!! TCAGTAAGAGTATCATTCTT+TGG - chr8_1:12505603-12505622 None:intergenic 30.0%
!! TACTGACTTGACTATTATAG+AGG + chr8_1:12505617-12505636 Msa1179190:CDS 30.0%
ATGATGAGACATTGAGAAAT+CGG + chr8_1:12505787-12505806 Msa1179190:CDS 30.0%
GAAGGATAAAGCAAAGTATA+TGG - chr8_1:12505831-12505850 None:intergenic 30.0%
ACTTTGAATAACAGATGAGA+AGG + chr8_1:12505928-12505947 Msa1179190:three_prime_UTR 30.0%
!!! AGCCTTAATGGTTTTATTTC+AGG + chr8_1:12506091-12506110 Msa1179190:three_prime_UTR 30.0%
! TTTGAAACATATGAGACAAC+TGG - chr8_1:12506119-12506138 None:intergenic 30.0%
TAAATACGAACCATTCCCTA+TGG + chr8_1:12501129-12501148 Msa1179190:five_prime_UTR 35.0%
AAGATGACTTCATTGGTGAA+AGG + chr8_1:12501208-12501227 Msa1179190:exon 35.0%
TCTCTTTGATAAGCACGAAA+AGG + chr8_1:12501231-12501250 Msa1179190:CDS 35.0%
TCAACTTGAGAGCTATAGAA+CGG - chr8_1:12501408-12501427 None:intergenic 35.0%
! CATTTTAAACGTGGAGAAGT+AGG + chr8_1:12501513-12501532 Msa1179190:intron 35.0%
TCTCTGTGAACTAACTCAAT+TGG - chr8_1:12501594-12501613 None:intergenic 35.0%
AAGTGTGATATATTTGGCGT+TGG + chr8_1:12501732-12501751 Msa1179190:intron 35.0%
TTGGTATAAATGGAACTACG+TGG + chr8_1:12501784-12501803 Msa1179190:intron 35.0%
TGGTATAAATGGAACTACGT+GGG + chr8_1:12501785-12501804 Msa1179190:intron 35.0%
GGTAAAGAGATCATAGAAGT+AGG - chr8_1:12501970-12501989 None:intergenic 35.0%
GGTAAAAGAGTCTAAGTAGT+CGG - chr8_1:12501991-12502010 None:intergenic 35.0%
!! TTTTGTTTGTCTCCCAATGT+TGG - chr8_1:12502495-12502514 None:intergenic 35.0%
TTCTTGATGTAAAAAGCTCC+AGG - chr8_1:12502561-12502580 None:intergenic 35.0%
CTTGAAGATATTCCAAACCA+TGG + chr8_1:12502618-12502637 Msa1179190:CDS 35.0%
ACATCAGAGTTGAAGAGATT+AGG - chr8_1:12502829-12502848 None:intergenic 35.0%
GAAGAGTTGAAGACTTTAAG+AGG + chr8_1:12502990-12503009 Msa1179190:CDS 35.0%
! AGAGTTGAAGACTTTAAGAG+GGG + chr8_1:12502992-12503011 Msa1179190:CDS 35.0%
AGAATTTGACGAGCCAATTT+AGG - chr8_1:12503098-12503117 None:intergenic 35.0%
!! AAATTGGCTCGTCAAATTCT+TGG + chr8_1:12503098-12503117 Msa1179190:CDS 35.0%
!! AATTGGCTCGTCAAATTCTT+GGG + chr8_1:12503099-12503118 Msa1179190:CDS 35.0%
GGCAGAAGAAAAACTAAAAC+AGG + chr8_1:12503161-12503180 Msa1179190:CDS 35.0%
CAAAATATGGCACAAGTGTT+TGG - chr8_1:12503194-12503213 None:intergenic 35.0%
! CAAACACTTGTGCCATATTT+TGG + chr8_1:12503192-12503211 Msa1179190:intron 35.0%
CACATGTTTAGGCCAAAATA+TGG - chr8_1:12503207-12503226 None:intergenic 35.0%
!!! TGGCCTAAACATGTGTTTTT+TGG + chr8_1:12503212-12503231 Msa1179190:intron 35.0%
TCATAAGCTAGGTAAACATC+TGG - chr8_1:12503243-12503262 None:intergenic 35.0%
CAAATGATTCATCTCTTGGA+AGG - chr8_1:12503357-12503376 None:intergenic 35.0%
CTTCCAAGAGATGAATCATT+TGG + chr8_1:12503355-12503374 Msa1179190:CDS 35.0%
TGTCCAAATGATTCATCTCT+TGG - chr8_1:12503361-12503380 None:intergenic 35.0%
GTAACTACAGATCTCAATTG+AGG - chr8_1:12503442-12503461 None:intergenic 35.0%
!! TCTTGAAAGGTGTTAAACTC+GGG - chr8_1:12503481-12503500 None:intergenic 35.0%
! ACAATGGTATTGGACTAATC+TGG - chr8_1:12503555-12503574 None:intergenic 35.0%
TAGTCCAATACCATTGTTCA+AGG + chr8_1:12503558-12503577 Msa1179190:CDS 35.0%
AGTTCCTTGAACAATGGTAT+TGG - chr8_1:12503565-12503584 None:intergenic 35.0%
!! ATACCTTGAATCACTTTTGG+TGG - chr8_1:12503625-12503644 None:intergenic 35.0%
!!! GAGAGTTTTTTGATGATGTG+TGG - chr8_1:12503808-12503827 None:intergenic 35.0%
! GTTTTCTTTAGTTATGGTGC+TGG - chr8_1:12503998-12504017 None:intergenic 35.0%
! AAAATTCACGAATGCCACTT+TGG - chr8_1:12504095-12504114 None:intergenic 35.0%
! TGGCATTCGTGAATTTTGTT+CGG + chr8_1:12504098-12504117 Msa1179190:intron 35.0%
! ATAAGATCGACTTTAACCAC+TGG + chr8_1:12504152-12504171 Msa1179190:intron 35.0%
! TAAGATCGACTTTAACCACT+GGG + chr8_1:12504153-12504172 Msa1179190:intron 35.0%
TTCCTCAAATATGGAAAGAG+CGG - chr8_1:12504240-12504259 None:intergenic 35.0%
!! AAGAATGGTTCTAGTAGCAT+AGG - chr8_1:12504286-12504305 None:intergenic 35.0%
!! AAGGTGTTGAAGCTTCTATT+TGG + chr8_1:12504415-12504434 Msa1179190:CDS 35.0%
GTCACACATGTAGATATTCA+TGG - chr8_1:12504563-12504582 None:intergenic 35.0%
TGAATATCTACATGTGTGAC+AGG + chr8_1:12504563-12504582 Msa1179190:intron 35.0%
! CTATTTGTTGCTATGACGAA+TGG - chr8_1:12504613-12504632 None:intergenic 35.0%
CATTCGTCATAGCAACAAAT+AGG + chr8_1:12504611-12504630 Msa1179190:CDS 35.0%
AACAAATAGGCATCTTAGTG+TGG + chr8_1:12504624-12504643 Msa1179190:CDS 35.0%
GGAAGCAAGAGTTTATGAAT+AGG - chr8_1:12504655-12504674 None:intergenic 35.0%
TTCATTGTGTCACGATAATG+TGG - chr8_1:12504676-12504695 None:intergenic 35.0%
ATAGAATCAACCTTCTTGTG+GGG + chr8_1:12504742-12504761 Msa1179190:CDS 35.0%
! AATGTCTGCTGTTGTTTACA+AGG + chr8_1:12504780-12504799 Msa1179190:CDS 35.0%
GATTGGAATTTCATTGAGCA+AGG + chr8_1:12504802-12504821 Msa1179190:CDS 35.0%
!! CTTCCTTGCTTGTTATTTAG+AGG + chr8_1:12505126-12505145 Msa1179190:intron 35.0%
ACTCCTCTAAATAACAAGCA+AGG - chr8_1:12505132-12505151 None:intergenic 35.0%
!! TTCTGATGGACTAGAGATAT+GGG + chr8_1:12505215-12505234 Msa1179190:CDS 35.0%
! ATTCTGGAAAGAACTTGTAG+AGG + chr8_1:12505323-12505342 Msa1179190:CDS 35.0%
TGAAGCAATCCATATAAGGA+TGG - chr8_1:12505424-12505443 None:intergenic 35.0%
CTTCATGCAGCTGTTAATTT+CGG + chr8_1:12505447-12505466 Msa1179190:CDS 35.0%
AATTTCGGACAATACCCATA+TGG + chr8_1:12505462-12505481 Msa1179190:CDS 35.0%
TAAGGATGTATCCTCCATAT+GGG - chr8_1:12505479-12505498 None:intergenic 35.0%
TTAAGGATGTATCCTCCATA+TGG - chr8_1:12505480-12505499 None:intergenic 35.0%
TTGTCCTCAAATAAGACTTC+TGG - chr8_1:12505575-12505594 None:intergenic 35.0%
! CTATTATAGAGGTCTTGTCA+AGG + chr8_1:12505628-12505647 Msa1179190:CDS 35.0%
TTCTGATACACAACCAAAAG+AGG + chr8_1:12505704-12505723 Msa1179190:CDS 35.0%
! CTTCTTTCCAAACCTTTTGA+AGG - chr8_1:12505730-12505749 None:intergenic 35.0%
CAAAAGGTTTGGAAAGAAGT+TGG + chr8_1:12505731-12505750 Msa1179190:CDS 35.0%
TTGAACAGAAACTCACTCAA+AGG + chr8_1:12505760-12505779 Msa1179190:CDS 35.0%
AAAGTATATGGCATCTTCAC+TGG - chr8_1:12505819-12505838 None:intergenic 35.0%
TTTGCTTTATCCTTCTAGTG+AGG + chr8_1:12505836-12505855 Msa1179190:CDS 35.0%
AGATACTATTAGGAATGCCT+CGG - chr8_1:12505875-12505894 None:intergenic 35.0%
AACAGGACTAGAATGTTACA+AGG - chr8_1:12506060-12506079 None:intergenic 35.0%
TGTATCAAATGCAGCCTTAA+TGG + chr8_1:12506079-12506098 Msa1179190:three_prime_UTR 35.0%
TGTCTTGTAACCATAGGGAA+TGG - chr8_1:12501142-12501161 None:intergenic 40.0%
GCTTGTGTCTTGTAACCATA+GGG - chr8_1:12501147-12501166 None:intergenic 40.0%
TGCTTGTGTCTTGTAACCAT+AGG - chr8_1:12501148-12501167 None:intergenic 40.0%
TGATAAGCACGAAAAGGTGA+AGG + chr8_1:12501237-12501256 Msa1179190:CDS 40.0%
GATAAGCACGAAAAGGTGAA+GGG + chr8_1:12501238-12501257 Msa1179190:CDS 40.0%
AACATCACCAATAGCACCTA+TGG - chr8_1:12501347-12501366 None:intergenic 40.0%
!! ATTAGTGCTACAAGTGCTGA+TGG + chr8_1:12501427-12501446 Msa1179190:CDS 40.0%
! GAGCTCACACATTTTAAACG+TGG + chr8_1:12501504-12501523 Msa1179190:intron 40.0%
!!! TTTGGCGTTGGTAACTGTTT+TGG + chr8_1:12501744-12501763 Msa1179190:intron 40.0%
GGTATAAATGGAACTACGTG+GGG + chr8_1:12501786-12501805 Msa1179190:intron 40.0%
GTATAAATGGAACTACGTGG+GGG + chr8_1:12501787-12501806 Msa1179190:intron 40.0%
! ACTCTTTTACCAACACTGTG+TGG + chr8_1:12502000-12502019 Msa1179190:intron 40.0%
AAGTGGTAGACATTTGTACG+TGG + chr8_1:12502026-12502045 Msa1179190:intron 40.0%
TTGTACGTGGAGGATATCTT+TGG + chr8_1:12502039-12502058 Msa1179190:intron 40.0%
GTTGCGGTATCAAAAACATG+TGG - chr8_1:12502123-12502142 None:intergenic 40.0%
GGAACTGGAAAAGGAAAAGT+TGG + chr8_1:12502432-12502451 Msa1179190:intron 40.0%
TGGAAAAGGAAAAGTTGGAC+AGG + chr8_1:12502437-12502456 Msa1179190:CDS 40.0%
GGACAGGAAACATTTCTGAA+AGG + chr8_1:12502453-12502472 Msa1179190:CDS 40.0%
TCTTACCTCCATACCAACAT+TGG + chr8_1:12502479-12502498 Msa1179190:CDS 40.0%
CTTACCTCCATACCAACATT+GGG + chr8_1:12502480-12502499 Msa1179190:CDS 40.0%
TTTGTCTCCCAATGTTGGTA+TGG - chr8_1:12502490-12502509 None:intergenic 40.0%
! TTTTGAATGGGACAGTGACA+TGG + chr8_1:12502530-12502549 Msa1179190:CDS 40.0%
TTTGAATGGGACAGTGACAT+GGG + chr8_1:12502531-12502550 Msa1179190:CDS 40.0%
CTTCAAGTGTCAAACTCACA+AGG - chr8_1:12502605-12502624 None:intergenic 40.0%
AAACAAAGTGGATGGATCCA+TGG - chr8_1:12502638-12502657 None:intergenic 40.0%
TGAGTTGCAAACAAAGTGGA+TGG - chr8_1:12502646-12502665 None:intergenic 40.0%
! TCCACTTTGTTTGCAACTCA+TGG + chr8_1:12502646-12502665 Msa1179190:CDS 40.0%
TCCATGAGTTGCAAACAAAG+TGG - chr8_1:12502650-12502669 None:intergenic 40.0%
ATACCTTCCAAGTGAAACAC+CGG + chr8_1:12502944-12502963 Msa1179190:CDS 40.0%
CTATAGTACACTAATGGAGC+CGG - chr8_1:12502966-12502985 None:intergenic 40.0%
! TTGAAGACTTTAAGAGGGGA+TGG + chr8_1:12502996-12503015 Msa1179190:CDS 40.0%
GCCTGACTCAAAACCTAAAT+TGG + chr8_1:12503082-12503101 Msa1179190:CDS 40.0%
!!! GCCAATTTAGGTTTTGAGTC+AGG - chr8_1:12503086-12503105 None:intergenic 40.0%
!! ATTGGCTCGTCAAATTCTTG+GGG + chr8_1:12503100-12503119 Msa1179190:CDS 40.0%
TCTCTTGGAAGGTAAACAGT+GGG - chr8_1:12503346-12503365 None:intergenic 40.0%
ATCTCTTGGAAGGTAAACAG+TGG - chr8_1:12503347-12503366 None:intergenic 40.0%
!! CTTGAAAGGTGTTAAACTCG+GGG - chr8_1:12503480-12503499 None:intergenic 40.0%
! ATCTGGCTTAGTACATCAGT+AGG - chr8_1:12503538-12503557 None:intergenic 40.0%
CGGAAAAGTTCCTTGAACAA+TGG - chr8_1:12503571-12503590 None:intergenic 40.0%
! AAGGAACTTTTCCGATCTGA+TGG + chr8_1:12503577-12503596 Msa1179190:CDS 40.0%
AGACTGATGAGGAATTTGCA+AGG + chr8_1:12503761-12503780 Msa1179190:CDS 40.0%
GACTGATGAGGAATTTGCAA+GGG + chr8_1:12503762-12503781 Msa1179190:CDS 40.0%
!!! CTATCTAGCTTGCTTTTTGG+TGG - chr8_1:12503955-12503974 None:intergenic 40.0%
!!! TGGCTATCTAGCTTGCTTTT+TGG - chr8_1:12503958-12503977 None:intergenic 40.0%
AGAAAACTTGGAGCCAAACA+TGG + chr8_1:12504011-12504030 Msa1179190:CDS 40.0%
GAAAACTTGGAGCCAAACAT+GGG + chr8_1:12504012-12504031 Msa1179190:CDS 40.0%
! GGCATTCGTGAATTTTGTTC+GGG + chr8_1:12504099-12504118 Msa1179190:intron 40.0%
! ATTTGAAATCTGTCCCTCTG+AGG + chr8_1:12504127-12504146 Msa1179190:intron 40.0%
GTCGATCTTATAACCTCAGA+GGG - chr8_1:12504143-12504162 None:intergenic 40.0%
AGTCGATCTTATAACCTCAG+AGG - chr8_1:12504144-12504163 None:intergenic 40.0%
TCCTCAAATATGGAAAGAGC+GGG - chr8_1:12504239-12504258 None:intergenic 40.0%
!! TAATGGAACTTTGAAGCCAC+TGG + chr8_1:12504317-12504336 Msa1179190:CDS 40.0%
GACCAAAACTATCACCTTGA+GGG - chr8_1:12504365-12504384 None:intergenic 40.0%
GGCAAGTAAACATTGCTAAC+AGG - chr8_1:12504387-12504406 None:intergenic 40.0%
ATCATCAACTTGTCAGCCAT+TGG + chr8_1:12504478-12504497 Msa1179190:CDS 40.0%
AAATGTCTTGGTCAATGCAG+AGG + chr8_1:12504714-12504733 Msa1179190:CDS 40.0%
AATGTCTTGGTCAATGCAGA+GGG + chr8_1:12504715-12504734 Msa1179190:CDS 40.0%
AGCATAATTTCCCCACAAGA+AGG - chr8_1:12504755-12504774 None:intergenic 40.0%
CTTGTGGGGAAATTATGCTT+TGG + chr8_1:12504756-12504775 Msa1179190:CDS 40.0%
! CTGCTGTTGTTTACAAGGAT+TGG + chr8_1:12504785-12504804 Msa1179190:CDS 40.0%
ATTTAGAGGAGTAGCTGTTG+AGG + chr8_1:12505140-12505159 Msa1179190:intron 40.0%
AAGGGTAGTCCTCTATCAAA+AGG - chr8_1:12505191-12505210 None:intergenic 40.0%
! CTAGTCCATCAGAAGCATAA+GGG - chr8_1:12505209-12505228 None:intergenic 40.0%
! TCTAGTCCATCAGAAGCATA+AGG - chr8_1:12505210-12505229 None:intergenic 40.0%
!! CTTCTGATGGACTAGAGATA+TGG + chr8_1:12505214-12505233 Msa1179190:CDS 40.0%
CAAGTTCTTTCCAGAATGCT+TGG - chr8_1:12505320-12505339 None:intergenic 40.0%
TGGAAAGAACTTGTAGAGGT+CGG + chr8_1:12505327-12505346 Msa1179190:CDS 40.0%
GTGACTTAAAGAATGCCACA+TGG + chr8_1:12505355-12505374 Msa1179190:CDS 40.0%
ACTTAAAGAATGCCACATGG+TGG + chr8_1:12505358-12505377 Msa1179190:CDS 40.0%
TTGCATCTTAAACCACCATG+TGG - chr8_1:12505373-12505392 None:intergenic 40.0%
! GTTTAAGATGCAAACTCGTG+AGG + chr8_1:12505380-12505399 Msa1179190:CDS 40.0%
AAGCTTCCACCATCCTTATA+TGG + chr8_1:12505412-12505431 Msa1179190:CDS 40.0%
AGCAATCCATATAAGGATGG+TGG - chr8_1:12505421-12505440 None:intergenic 40.0%
GTGCTGAAGCAATCCATATA+AGG - chr8_1:12505428-12505447 None:intergenic 40.0%
ATGAATCTCCTGCTCTTAGT+TGG - chr8_1:12505507-12505526 None:intergenic 40.0%
ATAGAGTTGAAGGTGACGAT+TGG + chr8_1:12505679-12505698 Msa1179190:CDS 40.0%
AACCAAAAGAGGCCTTCAAA+AGG + chr8_1:12505715-12505734 Msa1179190:CDS 40.0%
!! AACCTTTTGAAGGCCTCTTT+TGG - chr8_1:12505720-12505739 None:intergenic 40.0%
AAAGAGGCCTTCAAAAGGTT+TGG + chr8_1:12505720-12505739 Msa1179190:CDS 40.0%
GAGACATTGAGAAATCGGTA+TGG + chr8_1:12505792-12505811 Msa1179190:CDS 40.0%
CTTTATCCTTCTAGTGAGGA+AGG + chr8_1:12505840-12505859 Msa1179190:CDS 40.0%
! TCTCCATCTAAAATGGGTCA+TGG + chr8_1:12505892-12505911 Msa1179190:exon 40.0%
! CAACCATGACCCATTTTAGA+TGG - chr8_1:12505898-12505917 None:intergenic 40.0%
TGATCGTAAGTAGGAAGTGA+GGG - chr8_1:12505963-12505982 None:intergenic 40.0%
ATGATCGTAAGTAGGAAGTG+AGG - chr8_1:12505964-12505983 None:intergenic 40.0%
AAGGCTGCATTTGATACAAC+AGG - chr8_1:12506077-12506096 None:intergenic 40.0%
CAAAGCCCTACTGGTATCAT+TGG + chr8_1:12501316-12501335 Msa1179190:CDS 45.0%
CACCACCAATGATACCAGTA+GGG - chr8_1:12501324-12501343 None:intergenic 45.0%
AGCTATAGAACGGCCTAAGA+AGG - chr8_1:12501398-12501417 None:intergenic 45.0%
TGGTAGACATTTGTACGTGG+AGG + chr8_1:12502029-12502048 Msa1179190:intron 45.0%
CGAGTTCGATTCTCACATCT+AGG - chr8_1:12502097-12502116 None:intergenic 45.0%
AAGTGGATGGATCCATGGTT+TGG - chr8_1:12502633-12502652 None:intergenic 45.0%
CCTTGTTGGCAAAGAAGATG+CGG - chr8_1:12502701-12502720 None:intergenic 45.0%
! ACTTTAAGAGGGGATGGAAC+AGG + chr8_1:12503002-12503021 Msa1179190:CDS 45.0%
! TTGGCTCGTCAAATTCTTGG+GGG + chr8_1:12503101-12503120 Msa1179190:CDS 45.0%
GTGCTTGTTCACCATCAGAT+CGG - chr8_1:12503591-12503610 None:intergenic 45.0%
!! CCTTGAATCACTTTTGGTGG+TGG - chr8_1:12503622-12503641 None:intergenic 45.0%
CCACCACCAAAAGTGATTCA+AGG + chr8_1:12503619-12503638 Msa1179190:CDS 45.0%
TTTGCAAGGGAGATGATTGC+TGG + chr8_1:12503775-12503794 Msa1179190:CDS 45.0%
TTGCAAGGGAGATGATTGCT+GGG + chr8_1:12503776-12503795 Msa1179190:CDS 45.0%
ATGACAAAAGTCGAACCCAG+TGG - chr8_1:12504171-12504190 None:intergenic 45.0%
! GGGTTCGACTTTTGTCATAC+AGG + chr8_1:12504173-12504192 Msa1179190:intron 45.0%
ACCCGCTCTTTCCATATTTG+AGG + chr8_1:12504235-12504254 Msa1179190:CDS 45.0%
AAACTATCACCTTGAGGGTG+TGG - chr8_1:12504360-12504379 None:intergenic 45.0%
! CACCCTCAAGGTGATAGTTT+TGG + chr8_1:12504360-12504379 Msa1179190:CDS 45.0%
GGACCAAAACTATCACCTTG+AGG - chr8_1:12504366-12504385 None:intergenic 45.0%
GTTTACTTGCCTGCAAGTGA+AGG + chr8_1:12504396-12504415 Msa1179190:CDS 45.0%
! TTCTATTTGGCTCCTTGCCA+AGG + chr8_1:12504428-12504447 Msa1179190:CDS 45.0%
CAACAACAAAAGCCTTGGCA+AGG - chr8_1:12504443-12504462 None:intergenic 45.0%
!! GCTGACAAGTTGATGATAGC+AGG - chr8_1:12504475-12504494 None:intergenic 45.0%
TGCACTTGCACGAAATGTCT+TGG + chr8_1:12504702-12504721 Msa1179190:CDS 45.0%
! TTACGTTCATGTGGTGTCAG+TGG + chr8_1:12504913-12504932 Msa1179190:intron 45.0%
GGTAGTCCTCTATCAAAAGG+CGG - chr8_1:12505188-12505207 None:intergenic 45.0%
GACTACCCTTATGCTTCTGA+TGG + chr8_1:12505201-12505220 Msa1179190:CDS 45.0%
! TATGGGCTGCTATCAAGACA+TGG + chr8_1:12505232-12505251 Msa1179190:CDS 45.0%
! ATGGGCTGCTATCAAGACAT+GGG + chr8_1:12505233-12505252 Msa1179190:CDS 45.0%
TGCTTGGAGTTCAGCATCTT+GGG - chr8_1:12505304-12505323 None:intergenic 45.0%
ATGCTTGGAGTTCAGCATCT+TGG - chr8_1:12505305-12505324 None:intergenic 45.0%
ATGCTGAACTCCAAGCATTC+TGG + chr8_1:12505307-12505326 Msa1179190:CDS 45.0%
TTCGGACAATACCCATATGG+AGG + chr8_1:12505465-12505484 Msa1179190:CDS 45.0%
TGCTCTTAGTTGGTCGGTTA+AGG - chr8_1:12505497-12505516 None:intergenic 45.0%
TTAACCGACCAACTAAGAGC+AGG + chr8_1:12505496-12505515 Msa1179190:CDS 45.0%
ATCTCCTGCTCTTAGTTGGT+CGG - chr8_1:12505503-12505522 None:intergenic 45.0%
AGGAGATTCATGCCTGAGAA+AGG + chr8_1:12505516-12505535 Msa1179190:CDS 45.0%
TACTCAGGTGATCCTTTCTC+AGG - chr8_1:12505531-12505550 None:intergenic 45.0%
GCTTCTGATGAGCAATACCT+CGG + chr8_1:12505654-12505673 Msa1179190:CDS 45.0%
TACCTCGGAGATAGAGTTGA+AGG + chr8_1:12505669-12505688 Msa1179190:CDS 45.0%
GTCAATCCTTCCTCACTAGA+AGG - chr8_1:12505849-12505868 None:intergenic 45.0%
!!! TATTTTTTTAATTAAACTAA+TGG + chr8_1:12501478-12501497 Msa1179190:intron 5.0%
!!! ATTAATGTTATTTTTATAAT+TGG + chr8_1:12503893-12503912 Msa1179190:intron 5.0%
CGAAAAGGTGAAGGGAACTG+TGG + chr8_1:12501246-12501265 Msa1179190:CDS 50.0%
AGCCCTACTGGTATCATTGG+TGG + chr8_1:12501319-12501338 Msa1179190:CDS 50.0%
GCACCACCAATGATACCAGT+AGG - chr8_1:12501325-12501344 None:intergenic 50.0%
!! GGTATCATTGGTGGTGCCAT+AGG + chr8_1:12501328-12501347 Msa1179190:CDS 50.0%
!! GGTGCTATTGGTGATGTTGC+TGG + chr8_1:12501349-12501368 Msa1179190:CDS 50.0%
! GACACTGCCACTTCCTTCTT+AGG + chr8_1:12501382-12501401 Msa1179190:CDS 50.0%
AGAACGGCCTAAGAAGGAAG+TGG - chr8_1:12501392-12501411 None:intergenic 50.0%
AGGGGTTGAGTATCAAACCC+TGG - chr8_1:12501543-12501562 None:intergenic 50.0%
CCACTTATGCCACACAGTGT+TGG - chr8_1:12502012-12502031 None:intergenic 50.0%
CCAACACTGTGTGGCATAAG+TGG + chr8_1:12502009-12502028 Msa1179190:intron 50.0%
GTCTCCCAATGTTGGTATGG+AGG - chr8_1:12502487-12502506 None:intergenic 50.0%
GACAGTGACATGGGAATTCC+TGG + chr8_1:12502540-12502559 Msa1179190:CDS 50.0%
GTTGGCAAAGAAGATGCGGT+CGG - chr8_1:12502697-12502716 None:intergenic 50.0%
CCGCATCTTCTTTGCCAACA+AGG + chr8_1:12502698-12502717 Msa1179190:CDS 50.0%
AATGGAGCCGGTGTTTCACT+TGG - chr8_1:12502954-12502973 None:intergenic 50.0%
! AACAGGAGAGCGCAAGGAAT+GGG + chr8_1:12503019-12503038 Msa1179190:CDS 50.0%
CGATTTCCCTTACCCTCGAA+GGG + chr8_1:12503130-12503149 Msa1179190:CDS 50.0%
GATTTCCCTTACCCTCGAAG+GGG + chr8_1:12503131-12503150 Msa1179190:CDS 50.0%
TTCTTCCCCTTCGAGGGTAA+GGG - chr8_1:12503139-12503158 None:intergenic 50.0%
GGACTTCGAGTCTCACTGTT+AGG - chr8_1:12503325-12503344 None:intergenic 50.0%
! GAGAGAGCGCACATCTTGAA+AGG - chr8_1:12503494-12503513 None:intergenic 50.0%
GAACAGTGGACCATTCTGCA+TGG + chr8_1:12503737-12503756 Msa1179190:intron 50.0%
CATCAGTCTGCCATGCAGAA+TGG - chr8_1:12503750-12503769 None:intergenic 50.0%
TTCTGCATGGCAGACTGATG+AGG + chr8_1:12503750-12503769 Msa1179190:CDS 50.0%
TGCAAGGGAGATGATTGCTG+GGG + chr8_1:12503777-12503796 Msa1179190:CDS 50.0%
AACTTGGAGCCAAACATGGG+TGG + chr8_1:12504015-12504034 Msa1179190:CDS 50.0%
ACTTGGAGCCAAACATGGGT+GGG + chr8_1:12504016-12504035 Msa1179190:CDS 50.0%
AATATGGAAAGAGCGGGTCG+TGG - chr8_1:12504233-12504252 None:intergenic 50.0%
CTGCTTAGTTCAATGGCCAG+TGG - chr8_1:12504336-12504355 None:intergenic 50.0%
CACTGGCCATTGAACTAAGC+AGG + chr8_1:12504334-12504353 Msa1179190:CDS 50.0%
GTGTGGCCTGCTTAGTTCAA+TGG - chr8_1:12504343-12504362 None:intergenic 50.0%
GCTTCAACACCTTCACTTGC+AGG - chr8_1:12504408-12504427 None:intergenic 50.0%
GAATGGCTCAACAACAGCGT+GGG - chr8_1:12504596-12504615 None:intergenic 50.0%
CTCTATCAAAAGGCGGAGAC+CGG - chr8_1:12505181-12505200 None:intergenic 50.0%
GCTGCTATCAAGACATGGGT+TGG + chr8_1:12505237-12505256 Msa1179190:CDS 50.0%
GAGTTCAGCATCTTGGGCAA+TGG - chr8_1:12505298-12505317 None:intergenic 50.0%
GAACTTGTAGAGGTCGGTCA+TGG + chr8_1:12505333-12505352 Msa1179190:CDS 50.0%
CACCTTCAACTCTATCTCCG+AGG - chr8_1:12505674-12505693 None:intergenic 50.0%
ACTGCAGCTCAAAGCCCTAC+TGG + chr8_1:12501307-12501326 Msa1179190:CDS 55.0%
!! GGTGGTGCCATAGGTGCTAT+TGG + chr8_1:12501337-12501356 Msa1179190:CDS 55.0%
GTGGAGAAGTAGGGTCTCCA+GGG + chr8_1:12501523-12501542 Msa1179190:intron 55.0%
GAGCCGGTGTTTCACTTGGA+AGG - chr8_1:12502950-12502969 None:intergenic 55.0%
! GAACAGGAGAGCGCAAGGAA+TGG + chr8_1:12503018-12503037 Msa1179190:CDS 55.0%
GCGATTTCCCTTACCCTCGA+AGG + chr8_1:12503129-12503148 Msa1179190:CDS 55.0%
GTTCTTCCCCTTCGAGGGTA+AGG - chr8_1:12503140-12503159 None:intergenic 55.0%
TACCCTCGAAGGGGAAGAAC+CGG + chr8_1:12503140-12503159 Msa1179190:CDS 55.0%
AGATGTGCGCTCTCTCTACG+AGG + chr8_1:12503498-12503517 Msa1179190:CDS 55.0%
GATGTGCGCTCTCTCTACGA+GGG + chr8_1:12503499-12503518 Msa1179190:CDS 55.0%
CTTGGAGCCAAACATGGGTG+GGG + chr8_1:12504017-12504036 Msa1179190:CDS 55.0%
ACAGTGACCCCACCCATGTT+TGG - chr8_1:12504027-12504046 None:intergenic 55.0%
CGAATGGCTCAACAACAGCG+TGG - chr8_1:12504597-12504616 None:intergenic 55.0%
GAGGATCCAGCTTCTCCTAC+CGG + chr8_1:12505159-12505178 Msa1179190:CDS 55.0%
ATCAAAAGGCGGAGACCGGT+AGG - chr8_1:12505177-12505196 None:intergenic 55.0%
! CGGTCTCCGCCTTTTGATAG+AGG + chr8_1:12505179-12505198 Msa1179190:CDS 55.0%
!! GAGGAAGGATTGACTTGCCG+AGG + chr8_1:12505855-12505874 Msa1179190:CDS 55.0%
CGTGGAGAAGTAGGGTCTCC+AGG + chr8_1:12501522-12501541 Msa1179190:intron 60.0%
! GGATGGAACAGGAGAGCGCA+AGG + chr8_1:12503013-12503032 Msa1179190:CDS 60.0%
!! TGCCGGTTCTTCCCCTTCGA+GGG - chr8_1:12503145-12503164 None:intergenic 60.0%
CTAAGCAGGCCACACCCTCA+AGG + chr8_1:12504348-12504367 Msa1179190:CDS 60.0%
!! CTGCCGGTTCTTCCCCTTCG+AGG - chr8_1:12503146-12503165 None:intergenic 65.0%
GTGCGCTCTCTCTACGAGGG+TGG + chr8_1:12503502-12503521 Msa1179190:CDS 65.0%
GGGTGGGGTCACTGTAGAGC+AGG + chr8_1:12504032-12504051 Msa1179190:CDS 65.0%
CGGAGACCGGTAGGAGAAGC+TGG - chr8_1:12505168-12505187 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 12501060 12506176 12501060 ID=Msa1179190;Name=Msa1179190
chr8_1 mRNA 12501060 12506176 12501060 ID=Msa1179190-mRNA-1;Parent=Msa1179190;Name=Msa1179190-mRNA-1;_AED=0.38;_eAED=0.38;_QI=151|1|1|1|1|1|9|274|868
chr8_1 exon 12501060 12501448 12501060 ID=Msa1179190-mRNA-1:exon:4475;Parent=Msa1179190-mRNA-1
chr8_1 exon 12502433 12502719 12502433 ID=Msa1179190-mRNA-1:exon:4476;Parent=Msa1179190-mRNA-1
chr8_1 exon 12502942 12503182 12502942 ID=Msa1179190-mRNA-1:exon:4477;Parent=Msa1179190-mRNA-1
chr8_1 exon 12503320 12503640 12503320 ID=Msa1179190-mRNA-1:exon:4478;Parent=Msa1179190-mRNA-1
chr8_1 exon 12503743 12503828 12503743 ID=Msa1179190-mRNA-1:exon:4479;Parent=Msa1179190-mRNA-1
chr8_1 exon 12503946 12504053 12503946 ID=Msa1179190-mRNA-1:exon:4480;Parent=Msa1179190-mRNA-1
chr8_1 exon 12504195 12504499 12504195 ID=Msa1179190-mRNA-1:exon:4481;Parent=Msa1179190-mRNA-1
chr8_1 exon 12504585 12504848 12504585 ID=Msa1179190-mRNA-1:exon:4482;Parent=Msa1179190-mRNA-1
chr8_1 exon 12505146 12506176 12505146 ID=Msa1179190-mRNA-1:exon:4483;Parent=Msa1179190-mRNA-1
chr8_1 five_prime_UTR 12501060 12501210 12501060 ID=Msa1179190-mRNA-1:five_prime_utr;Parent=Msa1179190-mRNA-1
chr8_1 CDS 12501211 12501448 12501211 ID=Msa1179190-mRNA-1:cds;Parent=Msa1179190-mRNA-1
chr8_1 CDS 12502433 12502719 12502433 ID=Msa1179190-mRNA-1:cds;Parent=Msa1179190-mRNA-1
chr8_1 CDS 12502942 12503182 12502942 ID=Msa1179190-mRNA-1:cds;Parent=Msa1179190-mRNA-1
chr8_1 CDS 12503320 12503640 12503320 ID=Msa1179190-mRNA-1:cds;Parent=Msa1179190-mRNA-1
chr8_1 CDS 12503743 12503828 12503743 ID=Msa1179190-mRNA-1:cds;Parent=Msa1179190-mRNA-1
chr8_1 CDS 12503946 12504053 12503946 ID=Msa1179190-mRNA-1:cds;Parent=Msa1179190-mRNA-1
chr8_1 CDS 12504195 12504499 12504195 ID=Msa1179190-mRNA-1:cds;Parent=Msa1179190-mRNA-1
chr8_1 CDS 12504585 12504848 12504585 ID=Msa1179190-mRNA-1:cds;Parent=Msa1179190-mRNA-1
chr8_1 CDS 12505146 12505902 12505146 ID=Msa1179190-mRNA-1:cds;Parent=Msa1179190-mRNA-1
chr8_1 three_prime_UTR 12505903 12506176 12505903 ID=Msa1179190-mRNA-1:three_prime_utr;Parent=Msa1179190-mRNA-1
Gene Sequence

>Msa1179190

ATGACTTCATTGGTGAAAGGTCTCTTTGATAAGCACGAAAAGGTGAAGGGAACTGTGGTGTTGATGCAAAAGAATGTGTTAGACATCAACGCACTCACTGCAGCTCAAAGCCCTACTGGTATCATTGGTGGTGCCATAGGTGCTATTGGTGATGTTGCTGGCAATATACTTGACACTGCCACTTCCTTCTTAGGCCGTTCTATAGCTCTCAAGTTGATTAGTGCTACAAGTGCTGATGGAACTGGAAAAGGAAAAGTTGGACAGGAAACATTTCTGAAAGGTATTCTTACCTCCATACCAACATTGGGAGACAAACAAAATGCTTTCAGTATTAATTTTGAATGGGACAGTGACATGGGAATTCCTGGAGCTTTTTACATCAAGAATTATATGCAAGGTGAATTCTTCCTTGTGAGTTTGACACTTGAAGATATTCCAAACCATGGATCCATCCACTTTGTTTGCAACTCATGGATTTACAATTCTAAAAAGTACAAAACCGACCGCATCTTCTTTGCCAACAAGACATACCTTCCAAGTGAAACACCGGCTCCATTAGTGTACTATAGACAAGAAGAGTTGAAGACTTTAAGAGGGGATGGAACAGGAGAGCGCAAGGAATGGGAAAGAATATATGATTATGATGTCTACAATGATTTGGGTGAGCCTGACTCAAAACCTAAATTGGCTCGTCAAATTCTTGGGGGATCGAGCGATTTCCCTTACCCTCGAAGGGGAAGAACCGGCAGAAGAAAAACTAAAACAGATCCTAACAGTGAGACTCGAAGTCCCACTGTTTACCTTCCAAGAGATGAATCATTTGGACACACAAAGTCATCAGACTTTCTTGTTTACATACTCAAATCAGCATCTCAGAATGTCATACCTCAATTGAGATCTGTAGTTACGTTACAACTCAATAACCCCGAGTTTAACACCTTTCAAGATGTGCGCTCTCTCTACGAGGGTGGAATTAAGCTTCCTACTGATGTACTAAGCCAGATTAGTCCAATACCATTGTTCAAGGAACTTTTCCGATCTGATGGTGAACAAGCACTTAAGTTTCCACCACCAAAAGTGATTCAAGTGGACCATTCTGCATGGCAGACTGATGAGGAATTTGCAAGGGAGATGATTGCTGGGGTGAATCCACACATCATCAAAAAACTCTCGGAGTTTCCACCAAAAAGCAAGCTAGATAGCCAAAAATTTGGTGATAACACCAGCACCATAACTAAAGAAAACTTGGAGCCAAACATGGGTGGGGTCACTGTAGAGCAGGCTATCCAAAACAATAGATTGTACATACTTGATCACCACGACCCGCTCTTTCCATATTTGAGGAAAATAAATGCAAGTGAGACAAAGGCCTATGCTACTAGAACCATTCTTTTCTTGCAAGATAATGGAACTTTGAAGCCACTGGCCATTGAACTAAGCAGGCCACACCCTCAAGGTGATAGTTTTGGTCCTGTTAGCAATGTTTACTTGCCTGCAAGTGAAGGTGTTGAAGCTTCTATTTGGCTCCTTGCCAAGGCTTTTGTTGTTGTAAATGACTCCTGCTATCATCAACTTGTCAGCCATTGGTTGAACACCCACGCTGTTGTTGAGCCATTCGTCATAGCAACAAATAGGCATCTTAGTGTGGTTCACCCTATTCATAAACTCTTGCTTCCACATTATCGTGACACAATGAACATAAATGCACTTGCACGAAATGTCTTGGTCAATGCAGAGGGTATTATAGAATCAACCTTCTTGTGGGGAAATTATGCTTTGGAAATGTCTGCTGTTGTTTACAAGGATTGGAATTTCATTGAGCAAGGACTACCTAACGATCTAATCAAAAGAGGAGTAGCTGTTGAGGATCCAGCTTCTCCTACCGGTCTCCGCCTTTTGATAGAGGACTACCCTTATGCTTCTGATGGACTAGAGATATGGGCTGCTATCAAGACATGGGTTGGAGAATATGTGAATTTCTACTACAAATCAGATGCTGCCATTGCCCAAGATGCTGAACTCCAAGCATTCTGGAAAGAACTTGTAGAGGTCGGTCATGGTGACTTAAAGAATGCCACATGGTGGTTTAAGATGCAAACTCGTGAGGAGTTGATCGAAGCTTCCACCATCCTTATATGGATTGCTTCAGCACTTCATGCAGCTGTTAATTTCGGACAATACCCATATGGAGGATACATCCTTAACCGACCAACTAAGAGCAGGAGATTCATGCCTGAGAAAGGATCACCTGAGTATGATGAGCTTGCTAAGGATTACCAGAAGTCTTATTTGAGGACAATCACACCAAAGAATGATACTCTTACTGACTTGACTATTATAGAGGTCTTGTCAAGGCATGCTTCTGATGAGCAATACCTCGGAGATAGAGTTGAAGGTGACGATTGGACTTCTGATACACAACCAAAAGAGGCCTTCAAAAGGTTTGGAAAGAAGTTGGCTGAAATTGAACAGAAACTCACTCAAAGGAACAATGATGAGACATTGAGAAATCGGTATGGACCAGTGAAGATGCCATATACTTTGCTTTATCCTTCTAGTGAGGAAGGATTGACTTGCCGAGGCATTCCTAATAGTATCTCCATCTAA
Protein sequence

>Msa1179190

MTSLVKGLFDKHEKVKGTVVLMQKNVLDINALTAAQSPTGIIGGAIGAIGDVAGNILDTATSFLGRSIALKLISATSADGTGKGKVGQETFLKGILTSIPTLGDKQNAFSINFEWDSDMGIPGAFYIKNYMQGEFFLVSLTLEDIPNHGSIHFVCNSWIYNSKKYKTDRIFFANKTYLPSETPAPLVYYRQEELKTLRGDGTGERKEWERIYDYDVYNDLGEPDSKPKLARQILGGSSDFPYPRRGRTGRRKTKTDPNSETRSPTVYLPRDESFGHTKSSDFLVYILKSASQNVIPQLRSVVTLQLNNPEFNTFQDVRSLYEGGIKLPTDVLSQISPIPLFKELFRSDGEQALKFPPPKVIQVDHSAWQTDEEFAREMIAGVNPHIIKKLSEFPPKSKLDSQKFGDNTSTITKENLEPNMGGVTVEQAIQNNRLYILDHHDPLFPYLRKINASETKAYATRTILFLQDNGTLKPLAIELSRPHPQGDSFGPVSNVYLPASEGVEASIWLLAKAFVVVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGNYALEMSAVVYKDWNFIEQGLPNDLIKRGVAVEDPASPTGLRLLIEDYPYASDGLEIWAAIKTWVGEYVNFYYKSDAAIAQDAELQAFWKELVEVGHGDLKNATWWFKMQTREELIEASTILIWIASALHAAVNFGQYPYGGYILNRPTKSRRFMPEKGSPEYDELAKDYQKSYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGDRVEGDDWTSDTQPKEAFKRFGKKLAEIEQKLTQRNNDETLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI*