Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1240250 | Msa1342980 | 0.934046 | 7.394214e-96 | -8.615850e-47 |
| Msa1240250 | Msa1406120 | 0.834229 | 3.382763e-56 | -8.615850e-47 |
| Msa1240250 | Msa1406150 | 0.826724 | 2.318606e-54 | -8.615850e-47 |
| Msa1099960 | Msa1240250 | 0.806048 | 9.936536e-50 | -8.615850e-47 |
| Msa1136290 | Msa1240250 | 0.804978 | 1.666657e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAAATTTACTATTATTA+AGG | 0.219077 | 8_2:+22685012 | Msa1240250:CDS |
| GAGTAAATGGGTTGCTAATT+AGG | 0.224027 | 8_2:+22687752 | Msa1240250:intron |
| TGTGAAACTTGCAGAGTAAA+TGG | 0.228097 | 8_2:+22687739 | Msa1240250:intron |
| AACATCTAATGTCATTTATA+AGG | 0.307085 | 8_2:+22688121 | Msa1240250:three_prime_UTR |
| GAGGAGTTGTTTCTTGTGTT+TGG | 0.339030 | 8_2:-22684986 | None:intergenic |
| ATGGATGGGAGGATCGATTC+TGG | 0.341412 | 8_2:+22685210 | Msa1240250:CDS |
| CTTGGATTTGTATATCAGTT+TGG | 0.352958 | 8_2:+22687798 | Msa1240250:three_prime_UTR |
| TGAGAAGAAAGAAGAGGAAA+AGG | 0.398179 | 8_2:-22684822 | None:intergenic |
| TCAACCCTCATGGTAAGCTT+TGG | 0.412034 | 8_2:-22688058 | None:intergenic |
| AAGAGAGAGGGGAGAAGTGG+TGG | 0.421098 | 8_2:-22684958 | None:intergenic |
| AAGAAATCACAGGAAACATA+AGG | 0.428279 | 8_2:-22684863 | None:intergenic |
| ACCATGAGGGTTGAAGGTAT+TGG | 0.439841 | 8_2:+22688067 | Msa1240250:three_prime_UTR |
| GAAAATTGTGTATACCTAGA+TGG | 0.447883 | 8_2:+22685989 | Msa1240250:CDS |
| AGAGAGAGGGGAGAAGTGGT+GGG | 0.449867 | 8_2:-22684957 | None:intergenic |
| AGGCGATGGTGTGGTGGTAG+AGG | 0.455578 | 8_2:-22684911 | None:intergenic |
| AATAATAGTAAATTTGAGAA+AGG | 0.461336 | 8_2:-22685008 | None:intergenic |
| CCTACACAAATAATTCTTGA+AGG | 0.462068 | 8_2:-22686304 | None:intergenic |
| TCGCAAAATGTTGCAATGGA+TGG | 0.472943 | 8_2:+22685195 | Msa1240250:CDS |
| AGAGAGGGGAGAAGTGGTGG+GGG | 0.479528 | 8_2:-22684955 | None:intergenic |
| AAGCTTACCATGAGGGTTGA+AGG | 0.480890 | 8_2:+22688061 | Msa1240250:three_prime_UTR |
| TGGAAATTGCCCTATGTGAA+TGG | 0.485069 | 8_2:+22686279 | Msa1240250:CDS |
| ATCGCCTTCTCCAAATCCTC+TGG | 0.490776 | 8_2:+22684927 | Msa1240250:CDS |
| CGCAAAATGTTGCAATGGAT+GGG | 0.493532 | 8_2:+22685196 | Msa1240250:CDS |
| TGGGTTGCTAATTAGGAATG+TGG | 0.499357 | 8_2:+22687759 | Msa1240250:three_prime_UTR |
| TATCAGTTTGGAAAAGCAAA+GGG | 0.500558 | 8_2:+22687810 | Msa1240250:three_prime_UTR |
| TGTAAGAGAGAGGGGAGAAG+TGG | 0.502957 | 8_2:-22684961 | None:intergenic |
| GGGAAAGGAAGCAAAGGTCT+TGG | 0.503925 | 8_2:+22687780 | Msa1240250:three_prime_UTR |
| TGTTTGGTTTGTAAGAGAGA+GGG | 0.514068 | 8_2:-22684970 | None:intergenic |
| GTGTTTGGTTTGTAAGAGAG+AGG | 0.518181 | 8_2:-22684971 | None:intergenic |
| GACATGAATCTCTACCATCT+AGG | 0.524863 | 8_2:-22686003 | None:intergenic |
| CAAGGAAGAAAAGAAATCAC+AGG | 0.525074 | 8_2:-22684873 | None:intergenic |
| AATAGTAAATTTGAGAAAGG+AGG | 0.529905 | 8_2:-22685005 | None:intergenic |
| GTTTGGTTTGTAAGAGAGAG+GGG | 0.538206 | 8_2:-22684969 | None:intergenic |
| AGAAATCACAGGAAACATAA+GGG | 0.541703 | 8_2:-22684862 | None:intergenic |
| GTGAAACTTGCAGAGTAAAT+GGG | 0.542934 | 8_2:+22687740 | Msa1240250:intron |
| GAGAGAGGGGAGAAGTGGTG+GGG | 0.543540 | 8_2:-22684956 | None:intergenic |
| CTTGAAGGTCCCATTCACAT+AGG | 0.544823 | 8_2:-22686289 | None:intergenic |
| AAGAGTTGAGAAGAAAGAAG+AGG | 0.546240 | 8_2:-22684828 | None:intergenic |
| AGGGTTCTATAGAGAGAGCA+AGG | 0.546817 | 8_2:-22684891 | None:intergenic |
| GGGTTGCTAATTAGGAATGT+GGG | 0.547124 | 8_2:+22687760 | Msa1240250:three_prime_UTR |
| TTGAAGGTCCCATTCACATA+GGG | 0.549497 | 8_2:-22686288 | None:intergenic |
| CCTTCAAGAATTATTTGTGT+AGG | 0.553857 | 8_2:+22686304 | Msa1240250:CDS |
| GCTAATTAGGAATGTGGGAA+AGG | 0.555262 | 8_2:+22687765 | Msa1240250:three_prime_UTR |
| GCGCGTGTTCTGTATTGATG+TGG | 0.555628 | 8_2:-22684718 | None:intergenic |
| GGAAATTGCCCTATGTGAAT+GGG | 0.557558 | 8_2:+22686280 | Msa1240250:CDS |
| ACCAATACCTTCAACCCTCA+TGG | 0.559112 | 8_2:-22688068 | None:intergenic |
| GTGGAGCATGATTAAGAATG+AGG | 0.560579 | 8_2:+22686375 | Msa1240250:three_prime_UTR |
| ATATCAGTTTGGAAAAGCAA+AGG | 0.569094 | 8_2:+22687809 | Msa1240250:three_prime_UTR |
| TAATGATAGCAATCAAGTAA+TGG | 0.570307 | 8_2:-22688234 | None:intergenic |
| TGAACCAGAGGATTTGGAGA+AGG | 0.570585 | 8_2:-22684931 | None:intergenic |
| GGCGATGGTGTGGTGGTAGA+GGG | 0.570655 | 8_2:-22684910 | None:intergenic |
| ACTATGAGAGAGAGATTCCA+TGG | 0.586821 | 8_2:+22685460 | Msa1240250:CDS |
| CGCGTGTTCTGTATTGATGT+GGG | 0.593198 | 8_2:-22684717 | None:intergenic |
| ATTTGGAGAAGGCGATGGTG+TGG | 0.593947 | 8_2:-22684920 | None:intergenic |
| GTATTGGTTCTCGATGATGA+AGG | 0.595746 | 8_2:+22688083 | Msa1240250:three_prime_UTR |
| TGGAGAAGGCGATGGTGTGG+TGG | 0.596377 | 8_2:-22684917 | None:intergenic |
| GCTCAAATTCACATTGAGAG+TGG | 0.599825 | 8_2:+22686259 | Msa1240250:CDS |
| GATGGTAGAGATTCATGTCA+AGG | 0.601564 | 8_2:+22686007 | Msa1240250:CDS |
| CATCTCGCAAAATGTTGCAA+TGG | 0.602901 | 8_2:+22685191 | Msa1240250:CDS |
| TATTGGTTCTCGATGATGAA+GGG | 0.602986 | 8_2:+22688084 | Msa1240250:three_prime_UTR |
| AGCTCCAAAGCTTACCATGA+GGG | 0.612141 | 8_2:+22688054 | Msa1240250:three_prime_UTR |
| AAAGCAAAGGGGCTGCAAGA+CGG | 0.618030 | 8_2:+22687822 | Msa1240250:three_prime_UTR |
| AGAAAGCGTGCTTCACACAC+AGG | 0.618451 | 8_2:-22684752 | None:intergenic |
| AGAGGATTTGGAGAAGGCGA+TGG | 0.624308 | 8_2:-22684925 | None:intergenic |
| AAAATGTTGCAATGGATGGG+AGG | 0.633582 | 8_2:+22685199 | Msa1240250:CDS |
| GAATGTGGGAAAGGAAGCAA+AGG | 0.638943 | 8_2:+22687774 | Msa1240250:three_prime_UTR |
| TGCATTTAAGAAGAAAGCAT+CGG | 0.641151 | 8_2:-22684793 | None:intergenic |
| CAAACATACTATTAGCAATG+AGG | 0.645232 | 8_2:-22688157 | None:intergenic |
| AGCATCGGCACGTAACACAA+TGG | 0.655268 | 8_2:-22684778 | None:intergenic |
| AGTGGCTTAAGAAAAGCAAG+TGG | 0.691519 | 8_2:+22686356 | Msa1240250:three_prime_UTR |
| AAGCTCCAAAGCTTACCATG+AGG | 0.702748 | 8_2:+22688053 | Msa1240250:three_prime_UTR |
| ATCAGTTTGGAAAAGCAAAG+GGG | 0.703892 | 8_2:+22687811 | Msa1240250:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTAATTAAAAGTTAT+TGG | + | chr8_2:22686821-22686840 | Msa1240250:intron | 10.0% |
| !! | AATAATAGTAAATTTGAGAA+AGG | - | chr8_2:22685011-22685030 | None:intergenic | 15.0% |
| !! | TCTCAAATTTACTATTATTA+AGG | + | chr8_2:22685012-22685031 | Msa1240250:CDS | 15.0% |
| !! | ATAAAGAAGAAAATAAGAAT+GGG | - | chr8_2:22685567-22685586 | None:intergenic | 15.0% |
| !!! | AAATCAATTTTACAAAACAT+TGG | - | chr8_2:22685670-22685689 | None:intergenic | 15.0% |
| !!! | TGAATTATTTTTTTTGTATG+TGG | + | chr8_2:22686044-22686063 | Msa1240250:intron | 15.0% |
| !!! | GAATTATTTTTTTTGTATGT+GGG | + | chr8_2:22686045-22686064 | Msa1240250:intron | 15.0% |
| !! | ATATTTATATGAGAATCATT+TGG | + | chr8_2:22686111-22686130 | Msa1240250:intron | 15.0% |
| !!! | ACTTTTATAAATAATTTGTG+AGG | - | chr8_2:22687868-22687887 | None:intergenic | 15.0% |
| !! | AATATAAATGTTAACATAAG+AGG | - | chr8_2:22688006-22688025 | None:intergenic | 15.0% |
| !!! | TAACATTTATATTGATAACA+AGG | + | chr8_2:22688013-22688032 | Msa1240250:intron | 15.0% |
| !! | TGAAATAGTATAACTATCAA+TGG | - | chr8_2:22685100-22685119 | None:intergenic | 20.0% |
| !! | TATCAAATTTGATTGCTTTA+TGG | + | chr8_2:22685413-22685432 | Msa1240250:intron | 20.0% |
| !! | CATAAAGAAGAAAATAAGAA+TGG | - | chr8_2:22685568-22685587 | None:intergenic | 20.0% |
| !! | GCATTTCTTAAATTTCTTTA+TGG | + | chr8_2:22685587-22685606 | Msa1240250:intron | 20.0% |
| !!! | AAATTTCTTTATGGTTTTGT+TGG | + | chr8_2:22685596-22685615 | Msa1240250:intron | 20.0% |
| !!! | AATTTCTTTATGGTTTTGTT+GGG | + | chr8_2:22685597-22685616 | Msa1240250:intron | 20.0% |
| !!! | TTTTTGAGATTTTCTAATTG+AGG | + | chr8_2:22685921-22685940 | Msa1240250:intron | 20.0% |
| !! | AATGTGAAAACTATAAGATT+TGG | - | chr8_2:22686179-22686198 | None:intergenic | 20.0% |
| !!! | ATGTTTTGTTTTGTTATGTA+GGG | + | chr8_2:22686237-22686256 | Msa1240250:intron | 20.0% |
| !!! | GGTGTTTTATATTTTATCAT+TGG | + | chr8_2:22686499-22686518 | Msa1240250:intron | 20.0% |
| !!! | ATATTTTATCATTGGTGTTA+TGG | + | chr8_2:22686507-22686526 | Msa1240250:intron | 20.0% |
| !! | TGTTATGAAAAATATACTAG+AGG | + | chr8_2:22687007-22687026 | Msa1240250:intron | 20.0% |
| !! | TTCATTAATCTTTGGTATTA+AGG | + | chr8_2:22687084-22687103 | Msa1240250:intron | 20.0% |
| !!! | TATTTTTTAGCACTCTAATT+TGG | + | chr8_2:22687540-22687559 | Msa1240250:intron | 20.0% |
| !!! | TTTGTGATCTCAATAAATTT+TGG | + | chr8_2:22687650-22687669 | Msa1240250:intron | 20.0% |
| !! | TTGCATAGATAACATTAAAA+TGG | - | chr8_2:22687703-22687722 | None:intergenic | 20.0% |
| !! | TTACTTCTGTTTAGATATAT+AGG | + | chr8_2:22687887-22687906 | Msa1240250:intron | 20.0% |
| !!! | AACATCTAATGTCATTTATA+AGG | + | chr8_2:22688121-22688140 | Msa1240250:three_prime_UTR | 20.0% |
| ! | AATAGTAAATTTGAGAAAGG+AGG | - | chr8_2:22685008-22685027 | None:intergenic | 25.0% |
| ! | TCAATCGCTCAAAAAAAATA+TGG | - | chr8_2:22685072-22685091 | None:intergenic | 25.0% |
| ! | TCAAAAGCAAAAATCATCAA+TGG | - | chr8_2:22685144-22685163 | None:intergenic | 25.0% |
| !!! | GATGATTTTTGCTTTTGATT+CGG | + | chr8_2:22685146-22685165 | Msa1240250:intron | 25.0% |
| ! | TATTATTATCATCCCATTCT+TGG | + | chr8_2:22685284-22685303 | Msa1240250:intron | 25.0% |
| ! | AATTTATGTAGAGGATAACT+TGG | - | chr8_2:22685339-22685358 | None:intergenic | 25.0% |
| ! | AAGTTATCCTCTACATAAAT+TGG | + | chr8_2:22685338-22685357 | Msa1240250:intron | 25.0% |
| ! | ACTCTTAAGTGTTTGATAAA+AGG | + | chr8_2:22685503-22685522 | Msa1240250:intron | 25.0% |
| ! | GAGAAAGAACAAAATCATTA+GGG | - | chr8_2:22685626-22685645 | None:intergenic | 25.0% |
| ! | TGAGAAAGAACAAAATCATT+AGG | - | chr8_2:22685627-22685646 | None:intergenic | 25.0% |
| ! | CAAACTGATAAAAAATTGAG+AGG | - | chr8_2:22685899-22685918 | None:intergenic | 25.0% |
| ! | TAATATTGAGAACCTGAATT+TGG | - | chr8_2:22686147-22686166 | None:intergenic | 25.0% |
| !! | TTTCACATTTGTTACATAAG+AGG | + | chr8_2:22686190-22686209 | Msa1240250:intron | 25.0% |
| !!! | CATGTTTTGTTTTGTTATGT+AGG | + | chr8_2:22686236-22686255 | Msa1240250:intron | 25.0% |
| !! | CAAAATATAAGTGCTGTAAA+TGG | + | chr8_2:22686408-22686427 | Msa1240250:intron | 25.0% |
| ! | TTATATGCAAATTTCTGCAT+AGG | + | chr8_2:22686478-22686497 | Msa1240250:intron | 25.0% |
| !!! | TTAAAGATATTGCTGCTTTT+TGG | + | chr8_2:22686580-22686599 | Msa1240250:intron | 25.0% |
| !!! | TAAAGATATTGCTGCTTTTT+GGG | + | chr8_2:22686581-22686600 | Msa1240250:intron | 25.0% |
| ! | TTTGTGTTTCACTTAAAATG+TGG | + | chr8_2:22686692-22686711 | Msa1240250:intron | 25.0% |
| !!! | TGATAAATGATCTCTTGTTT+TGG | - | chr8_2:22686733-22686752 | None:intergenic | 25.0% |
| ! | ATATAATATGTGAACACCTA+TGG | - | chr8_2:22686980-22686999 | None:intergenic | 25.0% |
| !! | TGATACTTGATAATTGTCAA+CGG | + | chr8_2:22687938-22687957 | Msa1240250:intron | 25.0% |
| ! | AAAGTACAACAACAAATATG+AGG | - | chr8_2:22687980-22687999 | None:intergenic | 25.0% |
| ! | TGCATTTAAGAAGAAAGCAT+CGG | - | chr8_2:22684796-22684815 | None:intergenic | 30.0% |
| AGAAATCACAGGAAACATAA+GGG | - | chr8_2:22684865-22684884 | None:intergenic | 30.0% | |
| AAGAAATCACAGGAAACATA+AGG | - | chr8_2:22684866-22684885 | None:intergenic | 30.0% | |
| !!! | TTTTGATTCGGTTCTACATT+CGG | + | chr8_2:22685158-22685177 | Msa1240250:intron | 30.0% |
| TATGAATAGACACCAAGAAT+GGG | - | chr8_2:22685299-22685318 | None:intergenic | 30.0% | |
| ATATGAATAGACACCAAGAA+TGG | - | chr8_2:22685300-22685319 | None:intergenic | 30.0% | |
| TAAGTCACTTGCATGAAAAA+CGG | + | chr8_2:22685699-22685718 | Msa1240250:intron | 30.0% | |
| !!! | TGTTTTTGTGTGTGTCATTT+TGG | + | chr8_2:22685767-22685786 | Msa1240250:intron | 30.0% |
| ! | AATGATTGTTGTCCATTTTG+AGG | + | chr8_2:22685801-22685820 | Msa1240250:intron | 30.0% |
| ATTGAGAGGAGACTTATAAA+GGG | - | chr8_2:22685885-22685904 | None:intergenic | 30.0% | |
| AATTGAGAGGAGACTTATAA+AGG | - | chr8_2:22685886-22685905 | None:intergenic | 30.0% | |
| GAAAATTGTGTATACCTAGA+TGG | + | chr8_2:22685989-22686008 | Msa1240250:CDS | 30.0% | |
| CCTACACAAATAATTCTTGA+AGG | - | chr8_2:22686307-22686326 | None:intergenic | 30.0% | |
| CCTTCAAGAATTATTTGTGT+AGG | + | chr8_2:22686304-22686323 | Msa1240250:CDS | 30.0% | |
| !! | AAAGAGACATTTTGATGAAG+TGG | + | chr8_2:22686338-22686357 | Msa1240250:three_prime_UTR | 30.0% |
| !!! | GTTTATTTTGTGCAAGTGAA+TGG | + | chr8_2:22686454-22686473 | Msa1240250:intron | 30.0% |
| !!! | AAAGATATTGCTGCTTTTTG+GGG | + | chr8_2:22686582-22686601 | Msa1240250:intron | 30.0% |
| CAAACATTATCTCTCATTGA+AGG | - | chr8_2:22686805-22686824 | None:intergenic | 30.0% | |
| AAGTTATTGGACAAATTCCT+TGG | + | chr8_2:22686834-22686853 | Msa1240250:intron | 30.0% | |
| ! | AGAGTGCTAAAAAATATCCT+CGG | - | chr8_2:22687536-22687555 | None:intergenic | 30.0% |
| CTTGGATTTGTATATCAGTT+TGG | + | chr8_2:22687798-22687817 | Msa1240250:three_prime_UTR | 30.0% | |
| ATATCAGTTTGGAAAAGCAA+AGG | + | chr8_2:22687809-22687828 | Msa1240250:three_prime_UTR | 30.0% | |
| TATCAGTTTGGAAAAGCAAA+GGG | + | chr8_2:22687810-22687829 | Msa1240250:three_prime_UTR | 30.0% | |
| CAAACATACTATTAGCAATG+AGG | - | chr8_2:22688160-22688179 | None:intergenic | 30.0% | |
| TGAGAAGAAAGAAGAGGAAA+AGG | - | chr8_2:22684825-22684844 | None:intergenic | 35.0% | |
| AAGAGTTGAGAAGAAAGAAG+AGG | - | chr8_2:22684831-22684850 | None:intergenic | 35.0% | |
| CAAGGAAGAAAAGAAATCAC+AGG | - | chr8_2:22684876-22684895 | None:intergenic | 35.0% | |
| !! | TGTTTGGTTTGTAAGAGAGA+GGG | - | chr8_2:22684973-22684992 | None:intergenic | 35.0% |
| AAGCATGCCAATTTATGTAG+AGG | - | chr8_2:22685348-22685367 | None:intergenic | 35.0% | |
| AAGTAGCTTTCAACATACCA+TGG | - | chr8_2:22685480-22685499 | None:intergenic | 35.0% | |
| AAGGATCACTAGAACTTACA+TGG | + | chr8_2:22685522-22685541 | Msa1240250:intron | 35.0% | |
| AGGATCACTAGAACTTACAT+GGG | + | chr8_2:22685523-22685542 | Msa1240250:intron | 35.0% | |
| !! | TGTTGTCCATTTTGAGGAAT+TGG | + | chr8_2:22685807-22685826 | Msa1240250:intron | 35.0% |
| TTCCATCCAATTCCTCAAAA+TGG | - | chr8_2:22685816-22685835 | None:intergenic | 35.0% | |
| ! | GAGATTCATGTCAAGGTATT+TGG | + | chr8_2:22686014-22686033 | Msa1240250:intron | 35.0% |
| ! | GAATGAAGAGTTGATTCCAT+AGG | + | chr8_2:22686961-22686980 | Msa1240250:intron | 35.0% |
| GGTGGTTGTTCATTAATCTT+TGG | + | chr8_2:22687076-22687095 | Msa1240250:intron | 35.0% | |
| AAATTGCAGCAGGAATCAAT+AGG | - | chr8_2:22687127-22687146 | None:intergenic | 35.0% | |
| CTGCAAAATACACTTTATGC+AGG | - | chr8_2:22687152-22687171 | None:intergenic | 35.0% | |
| AATAGAGTTACAGCACATGA+TGG | - | chr8_2:22687175-22687194 | None:intergenic | 35.0% | |
| ! | TTCACGAATTTTCGCGAATT+TGG | - | chr8_2:22687327-22687346 | None:intergenic | 35.0% |
| GAGAACAATGATCGAAATCA+TGG | - | chr8_2:22687442-22687461 | None:intergenic | 35.0% | |
| !! | CAACTTTGCTATTTCTGATC+TGG | + | chr8_2:22687495-22687514 | Msa1240250:intron | 35.0% |
| !!! | GGTTTTATTTTGACATGCAG+TGG | + | chr8_2:22687620-22687639 | Msa1240250:intron | 35.0% |
| TGTGAAACTTGCAGAGTAAA+TGG | + | chr8_2:22687739-22687758 | Msa1240250:intron | 35.0% | |
| GTGAAACTTGCAGAGTAAAT+GGG | + | chr8_2:22687740-22687759 | Msa1240250:intron | 35.0% | |
| !! | GAGTAAATGGGTTGCTAATT+AGG | + | chr8_2:22687752-22687771 | Msa1240250:intron | 35.0% |
| ATCAGTTTGGAAAAGCAAAG+GGG | + | chr8_2:22687811-22687830 | Msa1240250:three_prime_UTR | 35.0% | |
| !! | TATTGGTTCTCGATGATGAA+GGG | + | chr8_2:22688084-22688103 | Msa1240250:three_prime_UTR | 35.0% |
| !! | GTTTGGTTTGTAAGAGAGAG+GGG | - | chr8_2:22684972-22684991 | None:intergenic | 40.0% |
| !! | GTGTTTGGTTTGTAAGAGAG+AGG | - | chr8_2:22684974-22684993 | None:intergenic | 40.0% |
| !! | GAGGAGTTGTTTCTTGTGTT+TGG | - | chr8_2:22684989-22685008 | None:intergenic | 40.0% |
| CATCTCGCAAAATGTTGCAA+TGG | + | chr8_2:22685191-22685210 | Msa1240250:CDS | 40.0% | |
| TCGCAAAATGTTGCAATGGA+TGG | + | chr8_2:22685195-22685214 | Msa1240250:CDS | 40.0% | |
| CGCAAAATGTTGCAATGGAT+GGG | + | chr8_2:22685196-22685215 | Msa1240250:CDS | 40.0% | |
| AAAATGTTGCAATGGATGGG+AGG | + | chr8_2:22685199-22685218 | Msa1240250:CDS | 40.0% | |
| ACTATGAGAGAGAGATTCCA+TGG | + | chr8_2:22685460-22685479 | Msa1240250:CDS | 40.0% | |
| GGATCACTAGAACTTACATG+GGG | + | chr8_2:22685524-22685543 | Msa1240250:intron | 40.0% | |
| !! | GTCCATTTTGAGGAATTGGA+TGG | + | chr8_2:22685811-22685830 | Msa1240250:intron | 40.0% |
| ACCACTTCTGATTGCAAGTT+TGG | + | chr8_2:22685955-22685974 | Msa1240250:intron | 40.0% | |
| TCCAAACTTGCAATCAGAAG+TGG | - | chr8_2:22685959-22685978 | None:intergenic | 40.0% | |
| GACATGAATCTCTACCATCT+AGG | - | chr8_2:22686006-22686025 | None:intergenic | 40.0% | |
| GATGGTAGAGATTCATGTCA+AGG | + | chr8_2:22686007-22686026 | Msa1240250:CDS | 40.0% | |
| ! | GAGAATCATTTGGTCTTCAG+AGG | + | chr8_2:22686121-22686140 | Msa1240250:intron | 40.0% |
| GCTCAAATTCACATTGAGAG+TGG | + | chr8_2:22686259-22686278 | Msa1240250:CDS | 40.0% | |
| TGGAAATTGCCCTATGTGAA+TGG | + | chr8_2:22686279-22686298 | Msa1240250:CDS | 40.0% | |
| GGAAATTGCCCTATGTGAAT+GGG | + | chr8_2:22686280-22686299 | Msa1240250:CDS | 40.0% | |
| TTGAAGGTCCCATTCACATA+GGG | - | chr8_2:22686291-22686310 | None:intergenic | 40.0% | |
| AGTGGCTTAAGAAAAGCAAG+TGG | + | chr8_2:22686356-22686375 | Msa1240250:three_prime_UTR | 40.0% | |
| GTGGAGCATGATTAAGAATG+AGG | + | chr8_2:22686375-22686394 | Msa1240250:three_prime_UTR | 40.0% | |
| ATTGGACAAATTCCTTGGTG+TGG | + | chr8_2:22686839-22686858 | Msa1240250:intron | 40.0% | |
| CAGCAGGAATCAATAGGTTT+AGG | - | chr8_2:22687121-22687140 | None:intergenic | 40.0% | |
| TATGCAGGAAAAATTGCAGC+AGG | - | chr8_2:22687137-22687156 | None:intergenic | 40.0% | |
| ACCATAGTCACATAATTCGC+TGG | + | chr8_2:22687215-22687234 | Msa1240250:intron | 40.0% | |
| TCCAGCGAATTATGTGACTA+TGG | - | chr8_2:22687219-22687238 | None:intergenic | 40.0% | |
| CACATAATTCGCTGGATTGA+CGG | + | chr8_2:22687223-22687242 | Msa1240250:intron | 40.0% | |
| CAAATTCGCGAAAATTCGCA+TGG | + | chr8_2:22687371-22687390 | Msa1240250:intron | 40.0% | |
| !! | TTGCTATTTCTGATCTGGTC+CGG | + | chr8_2:22687500-22687519 | Msa1240250:intron | 40.0% |
| TGGGTTGCTAATTAGGAATG+TGG | + | chr8_2:22687759-22687778 | Msa1240250:three_prime_UTR | 40.0% | |
| GGGTTGCTAATTAGGAATGT+GGG | + | chr8_2:22687760-22687779 | Msa1240250:three_prime_UTR | 40.0% | |
| GCTAATTAGGAATGTGGGAA+AGG | + | chr8_2:22687765-22687784 | Msa1240250:three_prime_UTR | 40.0% | |
| TAACAAGGTCTTTCTAACGC+AGG | + | chr8_2:22688028-22688047 | Msa1240250:intron | 40.0% | |
| !! | GTATTGGTTCTCGATGATGA+AGG | + | chr8_2:22688083-22688102 | Msa1240250:three_prime_UTR | 40.0% |
| ! | CGCGTGTTCTGTATTGATGT+GGG | - | chr8_2:22684720-22684739 | None:intergenic | 45.0% |
| AGGGTTCTATAGAGAGAGCA+AGG | - | chr8_2:22684894-22684913 | None:intergenic | 45.0% | |
| TGAACCAGAGGATTTGGAGA+AGG | - | chr8_2:22684934-22684953 | None:intergenic | 45.0% | |
| CTTACATGGGGCTTTCTTGA+TGG | + | chr8_2:22685536-22685555 | Msa1240250:intron | 45.0% | |
| CTTGAAGGTCCCATTCACAT+AGG | - | chr8_2:22686292-22686311 | None:intergenic | 45.0% | |
| CCTCTATGTCAGTTAGCAGT+TGG | - | chr8_2:22686774-22686793 | None:intergenic | 45.0% | |
| CCAACTGCTAACTGACATAG+AGG | + | chr8_2:22686771-22686790 | Msa1240250:intron | 45.0% | |
| ACTGCTAACTGACATAGAGG+AGG | + | chr8_2:22686774-22686793 | Msa1240250:intron | 45.0% | |
| ATGTGCAACATACCACACCA+AGG | - | chr8_2:22686854-22686873 | None:intergenic | 45.0% | |
| CATCACCATAGCACTCTAAG+GGG | - | chr8_2:22687057-22687076 | None:intergenic | 45.0% | |
| CCATCACCATAGCACTCTAA+GGG | - | chr8_2:22687058-22687077 | None:intergenic | 45.0% | |
| ACCATCACCATAGCACTCTA+AGG | - | chr8_2:22687059-22687078 | None:intergenic | 45.0% | |
| !! | TTAGAGTGCTATGGTGATGG+TGG | + | chr8_2:22687058-22687077 | Msa1240250:intron | 45.0% |
| !! | TACGCGAAAGTATCGCGAAT+CGG | - | chr8_2:22687274-22687293 | None:intergenic | 45.0% |
| TCGCGAAAATTCGCATGGTT+TGG | + | chr8_2:22687376-22687395 | Msa1240250:intron | 45.0% | |
| CGCGAAAATTCGCATGGTTT+GGG | + | chr8_2:22687377-22687396 | Msa1240250:intron | 45.0% | |
| GCAGACACAGAGAGCAATAA+GGG | - | chr8_2:22687464-22687483 | None:intergenic | 45.0% | |
| AGCAGACACAGAGAGCAATA+AGG | - | chr8_2:22687465-22687484 | None:intergenic | 45.0% | |
| TTATTGCTCTCTGTGTCTGC+TGG | + | chr8_2:22687464-22687483 | Msa1240250:intron | 45.0% | |
| TATCCTCGGCTAACACAAAC+CGG | - | chr8_2:22687522-22687541 | None:intergenic | 45.0% | |
| AACCTCATAGCAGCTGCAAT+CGG | - | chr8_2:22687604-22687623 | None:intergenic | 45.0% | |
| GAATGTGGGAAAGGAAGCAA+AGG | + | chr8_2:22687774-22687793 | Msa1240250:three_prime_UTR | 45.0% | |
| AAGCTCCAAAGCTTACCATG+AGG | + | chr8_2:22688053-22688072 | Msa1240250:three_prime_UTR | 45.0% | |
| AGCTCCAAAGCTTACCATGA+GGG | + | chr8_2:22688054-22688073 | Msa1240250:three_prime_UTR | 45.0% | |
| TCAACCCTCATGGTAAGCTT+TGG | - | chr8_2:22688061-22688080 | None:intergenic | 45.0% | |
| AAGCTTACCATGAGGGTTGA+AGG | + | chr8_2:22688061-22688080 | Msa1240250:three_prime_UTR | 45.0% | |
| ! | ACCATGAGGGTTGAAGGTAT+TGG | + | chr8_2:22688067-22688086 | Msa1240250:three_prime_UTR | 45.0% |
| ACCAATACCTTCAACCCTCA+TGG | - | chr8_2:22688071-22688090 | None:intergenic | 45.0% | |
| ! | GCGCGTGTTCTGTATTGATG+TGG | - | chr8_2:22684721-22684740 | None:intergenic | 50.0% |
| ! | AGAAAGCGTGCTTCACACAC+AGG | - | chr8_2:22684755-22684774 | None:intergenic | 50.0% |
| !! | AGCATCGGCACGTAACACAA+TGG | - | chr8_2:22684781-22684800 | None:intergenic | 50.0% |
| ATTTGGAGAAGGCGATGGTG+TGG | - | chr8_2:22684923-22684942 | None:intergenic | 50.0% | |
| AGAGGATTTGGAGAAGGCGA+TGG | - | chr8_2:22684928-22684947 | None:intergenic | 50.0% | |
| ATCGCCTTCTCCAAATCCTC+TGG | + | chr8_2:22684927-22684946 | Msa1240250:CDS | 50.0% | |
| TGTAAGAGAGAGGGGAGAAG+TGG | - | chr8_2:22684964-22684983 | None:intergenic | 50.0% | |
| ! | ATGGATGGGAGGATCGATTC+TGG | + | chr8_2:22685210-22685229 | Msa1240250:CDS | 50.0% |
| GGTCTTCAGAGGCCAAATTC+AGG | + | chr8_2:22686132-22686151 | Msa1240250:intron | 50.0% | |
| ! | TTCTGCCCCTTAGAGTGCTA+TGG | + | chr8_2:22687049-22687068 | Msa1240250:intron | 50.0% |
| ! | CCCTTAGAGTGCTATGGTGA+TGG | + | chr8_2:22687055-22687074 | Msa1240250:intron | 50.0% |
| TTCGCGATACTTTCGCGTAC+TGG | + | chr8_2:22687275-22687294 | Msa1240250:intron | 50.0% | |
| GCAAAGAACTACATCAGCCC+AGG | - | chr8_2:22687420-22687439 | None:intergenic | 50.0% | |
| ! | TACCGATTGCAGCTGCTATG+AGG | + | chr8_2:22687599-22687618 | Msa1240250:intron | 50.0% |
| GGGAAAGGAAGCAAAGGTCT+TGG | + | chr8_2:22687780-22687799 | Msa1240250:three_prime_UTR | 50.0% | |
| AAAGCAAAGGGGCTGCAAGA+CGG | + | chr8_2:22687822-22687841 | Msa1240250:three_prime_UTR | 50.0% | |
| GGGGGTTGAACCAGAGGATT+TGG | - | chr8_2:22684940-22684959 | None:intergenic | 55.0% | |
| AGAGAGAGGGGAGAAGTGGT+GGG | - | chr8_2:22684960-22684979 | None:intergenic | 55.0% | |
| AAGAGAGAGGGGAGAAGTGG+TGG | - | chr8_2:22684961-22684980 | None:intergenic | 55.0% | |
| ATTGACGGCGAACCGCGAAT+TGG | + | chr8_2:22687238-22687257 | Msa1240250:intron | 55.0% | |
| TGCTAAGCTTCCTGCAGCCT+GGG | + | chr8_2:22687400-22687419 | Msa1240250:intron | 55.0% | |
| GGCGATGGTGTGGTGGTAGA+GGG | - | chr8_2:22684913-22684932 | None:intergenic | 60.0% | |
| AGGCGATGGTGTGGTGGTAG+AGG | - | chr8_2:22684914-22684933 | None:intergenic | 60.0% | |
| TGGAGAAGGCGATGGTGTGG+TGG | - | chr8_2:22684920-22684939 | None:intergenic | 60.0% | |
| ! | AGTGGTGGGGGTTGAACCAG+AGG | - | chr8_2:22684946-22684965 | None:intergenic | 60.0% |
| AGAGAGGGGAGAAGTGGTGG+GGG | - | chr8_2:22684958-22684977 | None:intergenic | 60.0% | |
| GAGAGAGGGGAGAAGTGGTG+GGG | - | chr8_2:22684959-22684978 | None:intergenic | 60.0% | |
| GGTTCGCGCGAACCAATTCG+CGG | - | chr8_2:22687253-22687272 | None:intergenic | 60.0% | |
| GTGCTAAGCTTCCTGCAGCC+TGG | + | chr8_2:22687399-22687418 | Msa1240250:intron | 60.0% | |
| ACTACATCAGCCCAGGCTGC+AGG | - | chr8_2:22687413-22687432 | None:intergenic | 60.0% | |
| ! | GGTCCGGTTTGTGTTAGCCG+AGG | + | chr8_2:22687516-22687535 | Msa1240250:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 22684715 | 22688249 | 22684715 | ID=Msa1240250;Name=Msa1240250 |
| chr8_2 | mRNA | 22684715 | 22688249 | 22684715 | ID=Msa1240250-mRNA-1;Parent=Msa1240250;Name=Msa1240250-mRNA-1;_AED=0.17;_eAED=0.17;_QI=137|0.83|0.85|1|0|0.14|7|362|130 |
| chr8_2 | exon | 22684715 | 22685033 | 22684715 | ID=Msa1240250-mRNA-1:exon:8024;Parent=Msa1240250-mRNA-1 |
| chr8_2 | exon | 22685187 | 22685243 | 22685187 | ID=Msa1240250-mRNA-1:exon:8025;Parent=Msa1240250-mRNA-1 |
| chr8_2 | exon | 22685452 | 22685481 | 22685452 | ID=Msa1240250-mRNA-1:exon:8026;Parent=Msa1240250-mRNA-1 |
| chr8_2 | exon | 22685973 | 22686028 | 22685973 | ID=Msa1240250-mRNA-1:exon:8027;Parent=Msa1240250-mRNA-1 |
| chr8_2 | exon | 22686258 | 22686396 | 22686258 | ID=Msa1240250-mRNA-1:exon:8028;Parent=Msa1240250-mRNA-1 |
| chr8_2 | exon | 22687753 | 22687843 | 22687753 | ID=Msa1240250-mRNA-1:exon:8029;Parent=Msa1240250-mRNA-1 |
| chr8_2 | exon | 22688050 | 22688249 | 22688050 | ID=Msa1240250-mRNA-1:exon:8030;Parent=Msa1240250-mRNA-1 |
| chr8_2 | five_prime_UTR | 22684715 | 22684851 | 22684715 | ID=Msa1240250-mRNA-1:five_prime_utr;Parent=Msa1240250-mRNA-1 |
| chr8_2 | CDS | 22684852 | 22685033 | 22684852 | ID=Msa1240250-mRNA-1:cds;Parent=Msa1240250-mRNA-1 |
| chr8_2 | CDS | 22685187 | 22685243 | 22685187 | ID=Msa1240250-mRNA-1:cds;Parent=Msa1240250-mRNA-1 |
| chr8_2 | CDS | 22685452 | 22685481 | 22685452 | ID=Msa1240250-mRNA-1:cds;Parent=Msa1240250-mRNA-1 |
| chr8_2 | CDS | 22685973 | 22686028 | 22685973 | ID=Msa1240250-mRNA-1:cds;Parent=Msa1240250-mRNA-1 |
| chr8_2 | CDS | 22686258 | 22686325 | 22686258 | ID=Msa1240250-mRNA-1:cds;Parent=Msa1240250-mRNA-1 |
| chr8_2 | three_prime_UTR | 22686326 | 22686396 | 22686326 | ID=Msa1240250-mRNA-1:three_prime_utr;Parent=Msa1240250-mRNA-1 |
| chr8_2 | three_prime_UTR | 22687753 | 22687843 | 22687753 | ID=Msa1240250-mRNA-1:three_prime_utr;Parent=Msa1240250-mRNA-1 |
| chr8_2 | three_prime_UTR | 22688050 | 22688249 | 22688050 | ID=Msa1240250-mRNA-1:three_prime_utr;Parent=Msa1240250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
