Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248860 | XP_013457572.1 | 78.395 | 162 | 32 | 1 | 2 | 160 | 129 | 290 | 8.43e-76 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248860 | sp|B3H672|PP317_ARATH | 47.742 | 155 | 75 | 2 | 10 | 160 | 135 | 287 | 5.99e-34 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248860 | A0A072URA8 | 78.395 | 162 | 32 | 1 | 2 | 160 | 129 | 290 | 4.03e-76 | 249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0693380 | Msa1248860 | 0.801986 | 6.948515e-49 | -8.615850e-47 |
| Msa0716840 | Msa1248860 | 0.808812 | 2.576749e-50 | -8.615850e-47 |
| Msa0373930 | Msa1248860 | 0.805539 | 1.271228e-49 | -8.615850e-47 |
| Msa1082500 | Msa1248860 | 0.802245 | 6.147555e-49 | -8.615850e-47 |
| Msa1194920 | Msa1248860 | 0.818942 | 1.506647e-52 | -8.615850e-47 |
| Msa1195080 | Msa1248860 | 0.896860 | 2.458771e-76 | -8.615850e-47 |
| Msa1203250 | Msa1248860 | 0.802323 | 5.923415e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248860 | MtrunA17_Chr4g0055401 | 78.395 | 162 | 32 | 1 | 2 | 160 | 129 | 290 | 7.75e-80 | 249 |
| Msa1248860 | MtrunA17_Chr4g0042181 | 28.169 | 142 | 98 | 2 | 12 | 149 | 169 | 310 | 7.99e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248860 | AT4G17616.1 | 47.742 | 155 | 75 | 2 | 10 | 160 | 135 | 287 | 6.09e-35 | 128 |
| Msa1248860 | AT1G03100.1 | 28.472 | 144 | 99 | 2 | 10 | 149 | 177 | 320 | 9.26e-12 | 62.4 |
Find 65 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTGTGAAGACAGTAAT+TGG | 0.189776 | 8_2:-43090608 | Msa1248860:CDS |
| TTCTACATCTGAATTTAAAT+TGG | 0.221172 | 8_2:+43092312 | None:intergenic |
| TTGCGGATTTATAACATTAA+AGG | 0.223732 | 8_2:-43092607 | Msa1248860:five_prime_UTR |
| TGTGGAAATTACTTGATATT+GGG | 0.256264 | 8_2:-43092366 | Msa1248860:five_prime_UTR |
| ATGTGGAAATTACTTGATAT+TGG | 0.266059 | 8_2:-43092367 | Msa1248860:five_prime_UTR |
| TAGTAGTTTGAGGGATAAAA+AGG | 0.266433 | 8_2:-43090540 | Msa1248860:CDS |
| TGATCCATGTAATTTATCTT+TGG | 0.299624 | 8_2:-43090729 | Msa1248860:CDS |
| ACTACAATTAATCTTCATAT+TGG | 0.315911 | 8_2:+43092672 | None:intergenic |
| GGAGGCAGTTAATTCGTCTA+TGG | 0.339461 | 8_2:-43092210 | Msa1248860:exon |
| TCACACAAGCATCAAGAAAA+AGG | 0.343795 | 8_2:+43090474 | None:intergenic |
| TTGCCGCAAGTTTGATTCAA+TGG | 0.373385 | 8_2:-43092650 | Msa1248860:five_prime_UTR |
| AGGTTAAATATCAAAGTATC+TGG | 0.384496 | 8_2:+43090494 | None:intergenic |
| ATCATCATTGATCACTGAAA+TGG | 0.387294 | 8_2:+43092480 | None:intergenic |
| GTCATTCTACCATCTAGTTT+CGG | 0.391713 | 8_2:-43092422 | Msa1248860:five_prime_UTR |
| CTAGAGTATCTTGAAGGAAC+AGG | 0.396822 | 8_2:-43092799 | Msa1248860:five_prime_UTR |
| CTTGACTTTCCGAAACTAGA+TGG | 0.401068 | 8_2:+43092413 | None:intergenic |
| TAAATATTAGTGAAACATTA+CGG | 0.422498 | 8_2:-43092864 | Msa1248860:five_prime_UTR |
| TGAGCACATGCCTAGGGGTA+TGG | 0.429091 | 8_2:-43092518 | Msa1248860:five_prime_UTR |
| TGCCGCAAGTTTGATTCAAT+GGG | 0.448344 | 8_2:-43092649 | Msa1248860:five_prime_UTR |
| TTCTTTGTAGTCATGCTTTG+CGG | 0.453705 | 8_2:-43092624 | Msa1248860:five_prime_UTR |
| GAATTGAAACGTCATATTGA+TGG | 0.455013 | 8_2:-43090320 | Msa1248860:CDS |
| TTGCAGATTTCGGATATGAA+TGG | 0.468630 | 8_2:-43090362 | Msa1248860:CDS |
| TAACAAGAGGAGGTGTACTT+TGG | 0.474858 | 8_2:+43092887 | None:intergenic |
| CTAGGTTGATGCTTAACAAA+GGG | 0.489512 | 8_2:-43090670 | Msa1248860:CDS |
| AACATTACGGCATGCATCTA+CGG | 0.494329 | 8_2:-43092851 | Msa1248860:five_prime_UTR |
| GAGCACATGCCTAGGGGTAT+GGG | 0.504100 | 8_2:-43092517 | Msa1248860:five_prime_UTR |
| AATATATCAATTCAGACCAT+TGG | 0.504346 | 8_2:+43092244 | None:intergenic |
| AACCTAGGTATAACTGATGC+AGG | 0.505058 | 8_2:+43090686 | None:intergenic |
| TTAGCCAAAGATAAATTACA+TGG | 0.509347 | 8_2:+43090725 | None:intergenic |
| TGATTTATGAGCACATGCCT+AGG | 0.520789 | 8_2:-43092525 | Msa1248860:five_prime_UTR |
| AAGAAGCTCAAAATATTATG+TGG | 0.525327 | 8_2:-43092384 | Msa1248860:five_prime_UTR |
| GACAAATGTCAATGAAAATG+AGG | 0.525546 | 8_2:-43092281 | Msa1248860:five_prime_UTR |
| ATTGAGTTAATGCTGCTGAT+GGG | 0.530195 | 8_2:-43090419 | Msa1248860:CDS |
| TCCACCCCTACGCCGCATAG+AGG | 0.531206 | 8_2:-43092932 | None:intergenic |
| GATTTATGAGCACATGCCTA+GGG | 0.541821 | 8_2:-43092524 | Msa1248860:five_prime_UTR |
| ACTTGATATTGGGGCTGAGA+GGG | 0.547189 | 8_2:-43092356 | Msa1248860:five_prime_UTR |
| GTGGAAATTACTTGATATTG+GGG | 0.556011 | 8_2:-43092365 | Msa1248860:five_prime_UTR |
| TCACTAATATTTATAACAAG+AGG | 0.557518 | 8_2:+43092874 | None:intergenic |
| GATTGAGTTAATGCTGCTGA+TGG | 0.559562 | 8_2:-43090420 | Msa1248860:CDS |
| AGCATTGCGATAAAGAATAC+CGG | 0.559831 | 8_2:+43092453 | None:intergenic |
| GAGGCAGTTAATTCGTCTAT+GGG | 0.565783 | 8_2:-43092209 | Msa1248860:intron |
| TGGTTTGAGAGATGAAATGA+TGG | 0.567404 | 8_2:-43090342 | Msa1248860:CDS |
| GAGAGGGTGCGAAAAGGTGT+TGG | 0.567841 | 8_2:-43092340 | Msa1248860:five_prime_UTR |
| GGGGCTGAGAGGGTGCGAAA+AGG | 0.580980 | 8_2:-43092346 | Msa1248860:five_prime_UTR |
| TACTTGATATTGGGGCTGAG+AGG | 0.584455 | 8_2:-43092357 | Msa1248860:five_prime_UTR |
| GGTGCGAAAAGGTGTTGGCA+AGG | 0.590379 | 8_2:-43092335 | Msa1248860:five_prime_UTR |
| AAATTCAGATGTAGAAACAA+TGG | 0.596835 | 8_2:-43092305 | Msa1248860:five_prime_UTR |
| GGAAACATGCTTCAGACCAA+TGG | 0.597399 | 8_2:-43092260 | Msa1248860:five_prime_UTR |
| CTAATATTTATAACAAGAGG+AGG | 0.599669 | 8_2:+43092877 | None:intergenic |
| CCTAGGTTGATGCTTAACAA+AGG | 0.600218 | 8_2:-43090671 | Msa1248860:CDS |
| ATCATTGATCACTGAAATGG+AGG | 0.600594 | 8_2:+43092483 | None:intergenic |
| GAATCTTCTCCCATACCCCT+AGG | 0.605803 | 8_2:+43092508 | None:intergenic |
| TGCCCATTGAATCAAACTTG+CGG | 0.606774 | 8_2:+43092647 | None:intergenic |
| GAGTATCTTGAAGGAACAGG+TGG | 0.613137 | 8_2:-43092796 | Msa1248860:five_prime_UTR |
| GGACAGTAGCTGATGCACAC+TGG | 0.613720 | 8_2:-43090397 | Msa1248860:CDS |
| TTGAGTTAATGCTGCTGATG+GGG | 0.623949 | 8_2:-43090418 | Msa1248860:CDS |
| GGTATAACTGATGCAGGAGA+CGG | 0.625519 | 8_2:+43090692 | None:intergenic |
| GTGATCAATGATGATGATGC+CGG | 0.629234 | 8_2:-43092472 | Msa1248860:five_prime_UTR |
| AGGCATGTGCTCATAAATCA+CGG | 0.631426 | 8_2:+43092528 | None:intergenic |
| CTCCTGCATCAGTTATACCT+AGG | 0.642181 | 8_2:-43090688 | Msa1248860:CDS |
| ATAAATTACATGGATCAACA+TGG | 0.663527 | 8_2:+43090735 | None:intergenic |
| ACGCCGCATAGAGGTTGAGG+AGG | 0.668856 | 8_2:-43092923 | Msa1248860:five_prime_UTR |
| CCTTTGTTAAGCATCAACCT+AGG | 0.679966 | 8_2:+43090671 | None:intergenic |
| ATTTATGAGCACATGCCTAG+GGG | 0.718468 | 8_2:-43092523 | Msa1248860:five_prime_UTR |
| ATTCCTCCTCAACCTCTATG+CGG | 0.727964 | 8_2:+43092920 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTAGTGAAACATTA+CGG | - | chr8_2:43090344-43090363 | Msa1248860:CDS | 15.0% |
| !!! | TGATATATTGTAAGTTTTAT+TGG | - | chr8_2:43091100-43091119 | Msa1248860:intron | 15.0% |
| !!! | ATAATCTTTTTGGAAATATT+TGG | - | chr8_2:43091848-43091867 | Msa1248860:intron | 15.0% |
| !! | TGAAATTTGAAGAAAAATTA+TGG | + | chr8_2:43092385-43092404 | None:intergenic | 15.0% |
| !! | TCACTAATATTTATAACAAG+AGG | + | chr8_2:43090337-43090356 | None:intergenic | 20.0% |
| !!! | CATATTTTTTATTAGGCTTA+TGG | + | chr8_2:43090498-43090517 | None:intergenic | 20.0% |
| !! | TAAGCCTAATAAAAAATATG+TGG | - | chr8_2:43090498-43090517 | Msa1248860:CDS | 20.0% |
| !! | ACTACAATTAATCTTCATAT+TGG | + | chr8_2:43090539-43090558 | None:intergenic | 20.0% |
| !! | TTCTACATCTGAATTTAAAT+TGG | + | chr8_2:43090899-43090918 | None:intergenic | 20.0% |
| !! | AAAATAAGCATAAACAACTT+AGG | + | chr8_2:43091062-43091081 | None:intergenic | 20.0% |
| !!! | TACTTTTTTTATCCTTTGAT+AGG | - | chr8_2:43091159-43091178 | Msa1248860:intron | 20.0% |
| !! | AATGAAAAATGATAATTCCA+AGG | + | chr8_2:43091662-43091681 | None:intergenic | 20.0% |
| !! | ATACTAAAATTAAAATGCCA+AGG | + | chr8_2:43092110-43092129 | None:intergenic | 20.0% |
| !!! | TTGGCATTTTAATTTTAGTA+TGG | - | chr8_2:43092109-43092128 | Msa1248860:intron | 20.0% |
| !! | AAATTCCAATAATTGAGAAA+GGG | + | chr8_2:43092344-43092363 | None:intergenic | 20.0% |
| !! | AAAATTCCAATAATTGAGAA+AGG | + | chr8_2:43092345-43092364 | None:intergenic | 20.0% |
| !!! | TGATTTTAATAGTAGTTTGA+GGG | - | chr8_2:43092659-43092678 | Msa1248860:five_prime_UTR | 20.0% |
| ! | CTAATATTTATAACAAGAGG+AGG | + | chr8_2:43090334-43090353 | None:intergenic | 25.0% |
| !!! | ATTTTTCTAGAGTATCTTGA+AGG | - | chr8_2:43090403-43090422 | Msa1248860:CDS | 25.0% |
| !!! | GTCACCACATATTTTTTATT+AGG | + | chr8_2:43090505-43090524 | None:intergenic | 25.0% |
| ! | TTGCGGATTTATAACATTAA+AGG | - | chr8_2:43090601-43090620 | Msa1248860:CDS | 25.0% |
| ! | ACCAATACTTCTTAAAAAGA+TGG | - | chr8_2:43090641-43090660 | Msa1248860:CDS | 25.0% |
| !!! | ACCATCTTTTTAAGAAGTAT+TGG | + | chr8_2:43090645-43090664 | None:intergenic | 25.0% |
| ! | AAGAAGCTCAAAATATTATG+TGG | - | chr8_2:43090824-43090843 | Msa1248860:intron | 25.0% |
| ! | ATGTGGAAATTACTTGATAT+TGG | - | chr8_2:43090841-43090860 | Msa1248860:intron | 25.0% |
| ! | TGTGGAAATTACTTGATATT+GGG | - | chr8_2:43090842-43090861 | Msa1248860:intron | 25.0% |
| ! | AAATTCAGATGTAGAAACAA+TGG | - | chr8_2:43090903-43090922 | Msa1248860:intron | 25.0% |
| ! | AATATATCAATTCAGACCAT+TGG | + | chr8_2:43090967-43090986 | None:intergenic | 25.0% |
| !!! | TTGATATATTTTTGCAACAG+AGG | - | chr8_2:43090977-43090996 | Msa1248860:intron | 25.0% |
| ! | ACTTACAATATATCAACATG+CGG | + | chr8_2:43091095-43091114 | None:intergenic | 25.0% |
| ! | GTTATTGAATAGAATAGCAA+TGG | + | chr8_2:43091207-43091226 | None:intergenic | 25.0% |
| ! | TTAAGTCGCTATATAGATAA+TGG | - | chr8_2:43091257-43091276 | Msa1248860:intron | 25.0% |
| ! | AGAGATCTTAAAATTACTGT+TGG | - | chr8_2:43091327-43091346 | Msa1248860:intron | 25.0% |
| !! | GGAAGTTTGAAATTATATGA+TGG | - | chr8_2:43091403-43091422 | Msa1248860:intron | 25.0% |
| ! | TTTAACAAGAAAAGCTCAAA+TGG | - | chr8_2:43091628-43091647 | Msa1248860:intron | 25.0% |
| !! | TCATAATGGCATAATCTTTT+TGG | - | chr8_2:43091838-43091857 | Msa1248860:intron | 25.0% |
| !!! | GTTTGAAATTCACCTTTTTA+GGG | - | chr8_2:43091934-43091953 | Msa1248860:intron | 25.0% |
| !!! | TTTGAAATTCACCTTTTTAG+GGG | - | chr8_2:43091935-43091954 | Msa1248860:intron | 25.0% |
| !!! | TTAATGTGAAATTTTGACCT+TGG | - | chr8_2:43092090-43092109 | Msa1248860:intron | 25.0% |
| ! | AAAGAATATTAAGTCGGAAT+GGG | - | chr8_2:43092164-43092183 | Msa1248860:intron | 25.0% |
| ! | CATTATACATTCATCATCTA+AGG | - | chr8_2:43092189-43092208 | Msa1248860:intron | 25.0% |
| ! | AAATTATGGTTCATCTAACT+TGG | + | chr8_2:43092371-43092390 | None:intergenic | 25.0% |
| !! | TCAAATTTCAAATCGTGTTT+TGG | - | chr8_2:43092395-43092414 | Msa1248860:five_prime_UTR | 25.0% |
| ! | AAAATTGTTGAAGAGAATTC+AGG | - | chr8_2:43092444-43092463 | Msa1248860:five_prime_UTR | 25.0% |
| ! | ATAAATTACATGGATCAACA+TGG | + | chr8_2:43092476-43092495 | None:intergenic | 25.0% |
| ! | TGATCCATGTAATTTATCTT+TGG | - | chr8_2:43092479-43092498 | Msa1248860:five_prime_UTR | 25.0% |
| ! | TTAGCCAAAGATAAATTACA+TGG | + | chr8_2:43092486-43092505 | None:intergenic | 25.0% |
| ! | CACAATATGAAAAACAATCA+AGG | + | chr8_2:43092589-43092608 | None:intergenic | 25.0% |
| !!! | GTGATTTTAATAGTAGTTTG+AGG | - | chr8_2:43092658-43092677 | Msa1248860:five_prime_UTR | 25.0% |
| !! | AGGTTAAATATCAAAGTATC+TGG | + | chr8_2:43092717-43092736 | None:intergenic | 25.0% |
| !! | TGTGATAATTTTGCAGATTT+CGG | - | chr8_2:43092836-43092855 | Msa1248860:five_prime_UTR | 25.0% |
| !!! | CTTTTTAAGAAGTATTGGTC+AGG | + | chr8_2:43090640-43090659 | None:intergenic | 30.0% |
| AAAGATGGTCAAAAAATGCA+AGG | - | chr8_2:43090656-43090675 | Msa1248860:CDS | 30.0% | |
| ATCATCATTGATCACTGAAA+TGG | + | chr8_2:43090731-43090750 | None:intergenic | 30.0% | |
| GTGGAAATTACTTGATATTG+GGG | - | chr8_2:43090843-43090862 | Msa1248860:intron | 30.0% | |
| GACAAATGTCAATGAAAATG+AGG | - | chr8_2:43090927-43090946 | Msa1248860:intron | 30.0% | |
| !! | ATATATTTTTGCAACAGAGG+AGG | - | chr8_2:43090980-43090999 | Msa1248860:intron | 30.0% |
| ATAAGCATAAACAACTTAGG+AGG | + | chr8_2:43091059-43091078 | None:intergenic | 30.0% | |
| AAGGATGATATTCCTATCAA+AGG | + | chr8_2:43091174-43091193 | None:intergenic | 30.0% | |
| ATTGAATAGAATAGCAATGG+TGG | + | chr8_2:43091204-43091223 | None:intergenic | 30.0% | |
| ACAAAACTCTGAACATCTAT+TGG | + | chr8_2:43091538-43091557 | None:intergenic | 30.0% | |
| AAATCTGTCATTGACACAAT+GGG | + | chr8_2:43091595-43091614 | None:intergenic | 30.0% | |
| AAAATCTGTCATTGACACAA+TGG | + | chr8_2:43091596-43091615 | None:intergenic | 30.0% | |
| AGTATGTAATGATAACTTCG+AGG | + | chr8_2:43091721-43091740 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTCAAGTAACTCAG+TGG | - | chr8_2:43091912-43091931 | Msa1248860:intron | 30.0% |
| !! | GGTTTGAAATTCACCTTTTT+AGG | - | chr8_2:43091933-43091952 | Msa1248860:intron | 30.0% |
| ACATTGCATATTATATGCAG+AGG | + | chr8_2:43091993-43092012 | None:intergenic | 30.0% | |
| CTAGCCAAAGAATATTAAGT+CGG | - | chr8_2:43092158-43092177 | Msa1248860:intron | 30.0% | |
| CATTCCGACTTAATATTCTT+TGG | + | chr8_2:43092165-43092184 | None:intergenic | 30.0% | |
| CAAAGAATATTAAGTCGGAA+TGG | - | chr8_2:43092163-43092182 | Msa1248860:intron | 30.0% | |
| CATATTGTGAAGACAGTAAT+TGG | - | chr8_2:43092600-43092619 | Msa1248860:five_prime_UTR | 30.0% | |
| TAGTAGTTTGAGGGATAAAA+AGG | - | chr8_2:43092668-43092687 | Msa1248860:five_prime_UTR | 30.0% | |
| GAATTGAAACGTCATATTGA+TGG | - | chr8_2:43092888-43092907 | Msa1248860:five_prime_UTR | 30.0% | |
| TTCTTTGTAGTCATGCTTTG+CGG | - | chr8_2:43090584-43090603 | Msa1248860:CDS | 35.0% | |
| ATCATTGATCACTGAAATGG+AGG | + | chr8_2:43090728-43090747 | None:intergenic | 35.0% | |
| AGCATTGCGATAAAGAATAC+CGG | + | chr8_2:43090758-43090777 | None:intergenic | 35.0% | |
| ! | GTCATTCTACCATCTAGTTT+CGG | - | chr8_2:43090786-43090805 | Msa1248860:intron | 35.0% |
| GTTCATGCAATTGAGAACAT+TGG | + | chr8_2:43091033-43091052 | None:intergenic | 35.0% | |
| ! | TAGCAATGGTGGAGTAATTA+AGG | + | chr8_2:43091193-43091212 | None:intergenic | 35.0% |
| TCTGCTACAAAAGAAATCAG+TGG | + | chr8_2:43091310-43091329 | None:intergenic | 35.0% | |
| AAAGTAGCAATTCCCGTAAA+GGG | - | chr8_2:43091357-43091376 | Msa1248860:intron | 35.0% | |
| GAATCTGTTAAACCTTCACA+AGG | - | chr8_2:43091512-43091531 | Msa1248860:intron | 35.0% | |
| AGAAAAGCTCAAATGGCATT+TGG | - | chr8_2:43091635-43091654 | Msa1248860:intron | 35.0% | |
| CTTTAGCATGTCTTTGCATA+TGG | - | chr8_2:43091694-43091713 | Msa1248860:intron | 35.0% | |
| TATAGGATATATTGCTCCAG+AGG | - | chr8_2:43091787-43091806 | Msa1248860:intron | 35.0% | |
| ! | TTTGGTTGGCTGTTTCATAA+TGG | - | chr8_2:43091824-43091843 | Msa1248860:intron | 35.0% |
| ! | TCATCATCTAAGGTAGTTGT+TGG | - | chr8_2:43092199-43092218 | Msa1248860:intron | 35.0% |
| AAATCCACTAAGCTGATCTT+AGG | - | chr8_2:43092245-43092264 | Msa1248860:five_prime_UTR | 35.0% | |
| ! | CTAATAAACTAATGGGCAAG+AGG | + | chr8_2:43092304-43092323 | None:intergenic | 35.0% |
| ! | CTCTTGCCCATTAGTTTATT+AGG | - | chr8_2:43092302-43092321 | Msa1248860:five_prime_UTR | 35.0% |
| GCAGCACCTAATAAACTAAT+GGG | + | chr8_2:43092311-43092330 | None:intergenic | 35.0% | |
| AGCAGCACCTAATAAACTAA+TGG | + | chr8_2:43092312-43092331 | None:intergenic | 35.0% | |
| CTTTGCCCTTTCTCAATTAT+TGG | - | chr8_2:43092336-43092355 | Msa1248860:five_prime_UTR | 35.0% | |
| !! | CTAGGTTGATGCTTAACAAA+GGG | - | chr8_2:43092538-43092557 | Msa1248860:five_prime_UTR | 35.0% |
| AAGGTCAAAAATTGCACAGA+TGG | + | chr8_2:43092570-43092589 | None:intergenic | 35.0% | |
| TCACACAAGCATCAAGAAAA+AGG | + | chr8_2:43092737-43092756 | None:intergenic | 35.0% | |
| ! | TTTTTCTTGATGCTTGTGTG+AGG | - | chr8_2:43092736-43092755 | Msa1248860:five_prime_UTR | 35.0% |
| ATTGAGTTAATGCTGCTGAT+GGG | - | chr8_2:43092789-43092808 | Msa1248860:five_prime_UTR | 35.0% | |
| TTGCAGATTTCGGATATGAA+TGG | - | chr8_2:43092846-43092865 | Msa1248860:five_prime_UTR | 35.0% | |
| TGGTTTGAGAGATGAAATGA+TGG | - | chr8_2:43092866-43092885 | Msa1248860:five_prime_UTR | 35.0% | |
| ! | TAACAAGAGGAGGTGTACTT+TGG | + | chr8_2:43090324-43090343 | None:intergenic | 40.0% |
| AACATTACGGCATGCATCTA+CGG | - | chr8_2:43090357-43090376 | Msa1248860:CDS | 40.0% | |
| ! | CTAGAGTATCTTGAAGGAAC+AGG | - | chr8_2:43090409-43090428 | Msa1248860:CDS | 40.0% |
| TTGCCGCAAGTTTGATTCAA+TGG | - | chr8_2:43090558-43090577 | Msa1248860:CDS | 40.0% | |
| TGCCGCAAGTTTGATTCAAT+GGG | - | chr8_2:43090559-43090578 | Msa1248860:CDS | 40.0% | |
| TGCCCATTGAATCAAACTTG+CGG | + | chr8_2:43090564-43090583 | None:intergenic | 40.0% | |
| AGGCATGTGCTCATAAATCA+CGG | + | chr8_2:43090683-43090702 | None:intergenic | 40.0% | |
| TGATTTATGAGCACATGCCT+AGG | - | chr8_2:43090683-43090702 | Msa1248860:CDS | 40.0% | |
| GATTTATGAGCACATGCCTA+GGG | - | chr8_2:43090684-43090703 | Msa1248860:CDS | 40.0% | |
| ATTTATGAGCACATGCCTAG+GGG | - | chr8_2:43090685-43090704 | Msa1248860:CDS | 40.0% | |
| ! | GTGATCAATGATGATGATGC+CGG | - | chr8_2:43090736-43090755 | Msa1248860:CDS | 40.0% |
| CTTGACTTTCCGAAACTAGA+TGG | + | chr8_2:43090798-43090817 | None:intergenic | 40.0% | |
| GAGGCAGTTAATTCGTCTAT+GGG | - | chr8_2:43090999-43091018 | Msa1248860:intron | 40.0% | |
| GAAAGTAGCAATTCCCGTAA+AGG | - | chr8_2:43091356-43091375 | Msa1248860:intron | 40.0% | |
| ATGCCAATGTGTTCATAGGA+TGG | - | chr8_2:43091382-43091401 | Msa1248860:intron | 40.0% | |
| CTTCCATCCTATGAACACAT+TGG | + | chr8_2:43091388-43091407 | None:intergenic | 40.0% | |
| !! | AACATCTATTGGCCTTGTGA+AGG | + | chr8_2:43091527-43091546 | None:intergenic | 40.0% |
| ! | CTTCTCAGCAATGGTGTTTT+GGG | + | chr8_2:43091762-43091781 | None:intergenic | 40.0% |
| ! | TCTTCTCAGCAATGGTGTTT+TGG | + | chr8_2:43091763-43091782 | None:intergenic | 40.0% |
| AAAACACCATTGCTGAGAAG+AGG | - | chr8_2:43091762-43091781 | Msa1248860:intron | 40.0% | |
| AAACACCATTGCTGAGAAGA+GGG | - | chr8_2:43091763-43091782 | Msa1248860:intron | 40.0% | |
| !! | TGTTCCGCAGAAATTTTGGT+TGG | - | chr8_2:43091810-43091829 | Msa1248860:intron | 40.0% |
| ACAGCCAACCAAAATTTCTG+CGG | + | chr8_2:43091817-43091836 | None:intergenic | 40.0% | |
| CCTCACTTATTCCCCTAAAA+AGG | + | chr8_2:43091949-43091968 | None:intergenic | 40.0% | |
| !! | CCTTTTTAGGGGAATAAGTG+AGG | - | chr8_2:43091946-43091965 | Msa1248860:intron | 40.0% |
| TGCAATGTGAGTTAAGCTCA+CGG | - | chr8_2:43092005-43092024 | Msa1248860:intron | 40.0% | |
| AACCTAGGTATAACTGATGC+AGG | + | chr8_2:43092525-43092544 | None:intergenic | 40.0% | |
| CCTTTGTTAAGCATCAACCT+AGG | + | chr8_2:43092540-43092559 | None:intergenic | 40.0% | |
| !! | CCTAGGTTGATGCTTAACAA+AGG | - | chr8_2:43092537-43092556 | Msa1248860:five_prime_UTR | 40.0% |
| GATTGAGTTAATGCTGCTGA+TGG | - | chr8_2:43092788-43092807 | Msa1248860:five_prime_UTR | 40.0% | |
| TTGAGTTAATGCTGCTGATG+GGG | - | chr8_2:43092790-43092809 | Msa1248860:five_prime_UTR | 40.0% | |
| ATTCCTCCTCAACCTCTATG+CGG | + | chr8_2:43090291-43090310 | None:intergenic | 45.0% | |
| GAGTATCTTGAAGGAACAGG+TGG | - | chr8_2:43090412-43090431 | Msa1248860:CDS | 45.0% | |
| TACTTGATATTGGGGCTGAG+AGG | - | chr8_2:43090851-43090870 | Msa1248860:intron | 45.0% | |
| ACTTGATATTGGGGCTGAGA+GGG | - | chr8_2:43090852-43090871 | Msa1248860:intron | 45.0% | |
| GGAAACATGCTTCAGACCAA+TGG | - | chr8_2:43090948-43090967 | Msa1248860:intron | 45.0% | |
| GGAGGCAGTTAATTCGTCTA+TGG | - | chr8_2:43090998-43091017 | Msa1248860:intron | 45.0% | |
| ACATTGGCATTGCCCTTTAC+GGG | + | chr8_2:43091372-43091391 | None:intergenic | 45.0% | |
| CACATTGGCATTGCCCTTTA+CGG | + | chr8_2:43091373-43091392 | None:intergenic | 45.0% | |
| GGCAATGCCAATGTGTTCAT+AGG | - | chr8_2:43091378-43091397 | Msa1248860:intron | 45.0% | |
| CTCAAATGGCATTTGGACCT+TGG | - | chr8_2:43091642-43091661 | Msa1248860:intron | 45.0% | |
| TATAGCCCTCTTCTCAGCAA+TGG | + | chr8_2:43091771-43091790 | None:intergenic | 45.0% | |
| ATTGCTGAGAAGAGGGCTAT+AGG | - | chr8_2:43091770-43091789 | Msa1248860:intron | 45.0% | |
| AAATTTCTGCGGAACACCTC+TGG | + | chr8_2:43091806-43091825 | None:intergenic | 45.0% | |
| !! | GAGGTGTTCCGCAGAAATTT+TGG | - | chr8_2:43091806-43091825 | Msa1248860:intron | 45.0% |
| GGGAATAAGTGAGGTGTATG+AGG | - | chr8_2:43091955-43091974 | Msa1248860:intron | 45.0% | |
| AATGTGAGTTAAGCTCACGG+CGG | - | chr8_2:43092008-43092027 | Msa1248860:intron | 45.0% | |
| GCTTCCTAAGATCAGCTTAG+TGG | + | chr8_2:43092252-43092271 | None:intergenic | 45.0% | |
| GGTATAACTGATGCAGGAGA+CGG | + | chr8_2:43092519-43092538 | None:intergenic | 45.0% | |
| CTCCTGCATCAGTTATACCT+AGG | - | chr8_2:43092520-43092539 | Msa1248860:five_prime_UTR | 45.0% | |
| GAATCTTCTCCCATACCCCT+AGG | + | chr8_2:43090703-43090722 | None:intergenic | 50.0% | |
| GGTGTATGAGGTTCGAACGT+CGG | - | chr8_2:43091967-43091986 | Msa1248860:intron | 50.0% | |
| GTTGCAGCAGCATGCATAAC+TGG | - | chr8_2:43092276-43092295 | Msa1248860:five_prime_UTR | 50.0% | |
| TGAGCACATGCCTAGGGGTA+TGG | - | chr8_2:43090690-43090709 | Msa1248860:CDS | 55.0% | |
| ! | GAGCACATGCCTAGGGGTAT+GGG | - | chr8_2:43090691-43090710 | Msa1248860:CDS | 55.0% |
| ! | GAGAGGGTGCGAAAAGGTGT+TGG | - | chr8_2:43090868-43090887 | Msa1248860:intron | 55.0% |
| !! | GGTGCGAAAAGGTGTTGGCA+AGG | - | chr8_2:43090873-43090892 | Msa1248860:intron | 55.0% |
| GGACAGTAGCTGATGCACAC+TGG | - | chr8_2:43092811-43092830 | Msa1248860:five_prime_UTR | 55.0% | |
| ! | GGGGCTGAGAGGGTGCGAAA+AGG | - | chr8_2:43090862-43090881 | Msa1248860:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 43090286 | 43092944 | 43090286 | ID=Msa1248860;Name=Msa1248860 |
| chr8_2 | mRNA | 43090286 | 43092944 | 43090286 | ID=Msa1248860-mRNA-1;Parent=Msa1248860;Name=Msa1248860-mRNA-1;_AED=0.38;_eAED=0.38;_QI=731|0|0.5|0.5|0|0|2|0|160 |
| chr8_2 | exon | 43090286 | 43090764 | 43090286 | ID=Msa1248860-mRNA-1:exon:13178;Parent=Msa1248860-mRNA-1 |
| chr8_2 | exon | 43092210 | 43092944 | 43092210 | ID=Msa1248860-mRNA-1:exon:13177;Parent=Msa1248860-mRNA-1 |
| chr8_2 | five_prime_UTR | 43092214 | 43092944 | 43092214 | ID=Msa1248860-mRNA-1:five_prime_utr;Parent=Msa1248860-mRNA-1 |
| chr8_2 | CDS | 43092210 | 43092213 | 43092210 | ID=Msa1248860-mRNA-1:cds;Parent=Msa1248860-mRNA-1 |
| chr8_2 | CDS | 43090286 | 43090764 | 43090286 | ID=Msa1248860-mRNA-1:cds;Parent=Msa1248860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
