Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1195080 | XP_013457572.1 | 78.035 | 173 | 35 | 1 | 2 | 171 | 129 | 301 | 4.02e-82 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1195080 | sp|B3H672|PP317_ARATH | 48.193 | 166 | 80 | 2 | 10 | 171 | 135 | 298 | 3.65e-37 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa1195080 | 0.805454 | 1.324506e-49 | -8.615850e-47 |
| Msa0119850 | Msa1195080 | 0.806753 | 7.059471e-50 | -8.615850e-47 |
| Msa0621490 | Msa1195080 | 0.833269 | 5.877080e-56 | -8.615850e-47 |
| Msa0661190 | Msa1195080 | -0.801399 | 9.170313e-49 | -8.615850e-47 |
| Msa0663390 | Msa1195080 | 0.810372 | 1.191204e-50 | -8.615850e-47 |
| Msa0669440 | Msa1195080 | 0.808699 | 2.724734e-50 | -8.615850e-47 |
| Msa0688960 | Msa1195080 | 0.806219 | 9.149635e-50 | -8.615850e-47 |
| Msa0692230 | Msa1195080 | 0.807844 | 4.144564e-50 | -8.615850e-47 |
| Msa0716840 | Msa1195080 | 0.811333 | 7.377936e-51 | -8.615850e-47 |
| Msa0796700 | Msa1195080 | 0.803536 | 3.327141e-49 | -8.615850e-47 |
| Msa0373930 | Msa1195080 | 0.808794 | 2.599352e-50 | -8.615850e-47 |
| Msa0389340 | Msa1195080 | 0.804629 | 1.970774e-49 | -8.615850e-47 |
| Msa0432770 | Msa1195080 | 0.809553 | 1.787489e-50 | -8.615850e-47 |
| Msa0440750 | Msa1195080 | 0.805675 | 1.190433e-49 | -8.615850e-47 |
| Msa0480000 | Msa1195080 | 0.814577 | 1.435020e-51 | -8.615850e-47 |
| Msa1003620 | Msa1195080 | 0.801252 | 9.830848e-49 | -8.615850e-47 |
| Msa1014540 | Msa1195080 | 0.804999 | 1.649266e-49 | -8.615850e-47 |
| Msa1046460 | Msa1195080 | 0.806515 | 7.925003e-50 | -8.615850e-47 |
| Msa0265380 | Msa1195080 | 0.807146 | 5.828744e-50 | -8.615850e-47 |
| Msa0309770 | Msa1195080 | 0.806728 | 7.143709e-50 | -8.615850e-47 |
| Msa0318980 | Msa1195080 | 0.802359 | 5.824527e-49 | -8.615850e-47 |
| Msa0333030 | Msa1195080 | 0.801247 | 9.850784e-49 | -8.615850e-47 |
| Msa0345970 | Msa1195080 | 0.809743 | 1.627461e-50 | -8.615850e-47 |
| Msa1111110 | Msa1195080 | 0.803559 | 3.290016e-49 | -8.615850e-47 |
| Msa1194920 | Msa1195080 | 0.886512 | 3.205839e-72 | -8.615850e-47 |
| Msa1195080 | Msa1203250 | 0.814830 | 1.261707e-51 | -8.615850e-47 |
| Msa1195080 | Msa1248860 | 0.896860 | 2.458771e-76 | -8.615850e-47 |
| Msa1195080 | Msa1250890 | 0.810473 | 1.132706e-50 | -8.615850e-47 |
| Msa1195080 | Msa1279210 | 0.811677 | 6.210414e-51 | -8.615850e-47 |
| Msa1195080 | Msa1351620 | 0.813775 | 2.157877e-51 | -8.615850e-47 |
| Msa1195080 | Msa1357530 | 0.810129 | 1.343940e-50 | -8.615850e-47 |
| Msa1195080 | Msa1384350 | 0.812098 | 5.030278e-51 | -8.615850e-47 |
| Msa1195080 | Msa1415640 | 0.829609 | 4.677251e-55 | -8.615850e-47 |
| Msa1195080 | Msa1416150 | 0.805045 | 1.613587e-49 | -8.615850e-47 |
| Msa1195080 | Msa1454120 | 0.825991 | 3.466342e-54 | -8.615850e-47 |
| Msa0515010 | Msa1195080 | 0.806271 | 8.921406e-50 | -8.615850e-47 |
| Msa0520750 | Msa1195080 | 0.801665 | 8.090559e-49 | -8.615850e-47 |
| Msa0580420 | Msa1195080 | 0.803620 | 3.195900e-49 | -8.615850e-47 |
| Msa0938220 | Msa1195080 | 0.817364 | 3.427439e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1195080 | MtrunA17_Chr4g0055401 | 78.035 | 173 | 35 | 1 | 2 | 171 | 129 | 301 | 3.69e-86 | 266 |
| Msa1195080 | MtrunA17_Chr4g0042181 | 27.607 | 163 | 114 | 2 | 13 | 171 | 170 | 332 | 6.37e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1195080 | AT4G17616.1 | 48.193 | 166 | 80 | 2 | 10 | 171 | 135 | 298 | 3.71e-38 | 138 |
| Msa1195080 | AT1G03100.1 | 27.108 | 166 | 117 | 2 | 10 | 171 | 177 | 342 | 3.99e-12 | 63.9 |
Find 73 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTGTGAAGACAGTAAT+TGG | 0.189776 | 8_1:-42866716 | Msa1195080:CDS |
| TTCTACATCTGAATTTAAAT+TGG | 0.221172 | 8_1:+42868401 | None:intergenic |
| TTGCGGATTTATAACATTAA+AGG | 0.223732 | 8_1:-42868696 | Msa1195080:five_prime_UTR |
| TGTGGAAATTACTTGATATT+GGG | 0.256264 | 8_1:-42868455 | Msa1195080:five_prime_UTR |
| ATGTGGAAATTACTTGATAT+TGG | 0.266059 | 8_1:-42868456 | Msa1195080:five_prime_UTR |
| TAGTAGTTTGAGGGATAAAA+AGG | 0.266433 | 8_1:-42866648 | Msa1195080:CDS |
| TGATCCATGTAATTTATCTT+TGG | 0.299624 | 8_1:-42866837 | Msa1195080:CDS |
| ACTACAATTAATCTTCATAT+TGG | 0.315911 | 8_1:+42868761 | None:intergenic |
| GGAGGCAGTTAATTCGTCTA+TGG | 0.339461 | 8_1:-42868299 | Msa1195080:exon |
| TCACACAAGCATCAAGAAAA+AGG | 0.343795 | 8_1:+42866582 | None:intergenic |
| AACCTAGGTATAACTGTTGC+AGG | 0.355838 | 8_1:+42866794 | None:intergenic |
| TTGCCGCAAGTTTGATTCAA+TGG | 0.373385 | 8_1:-42868739 | Msa1195080:five_prime_UTR |
| TTTCTAAATGAGTATCTTGA+AGG | 0.382168 | 8_1:-42868894 | Msa1195080:five_prime_UTR |
| AGGTTAAATATCAAAGTATC+TGG | 0.384496 | 8_1:+42866602 | None:intergenic |
| ATCATCATTGATCACTGAAA+TGG | 0.387294 | 8_1:+42868569 | None:intergenic |
| GTCATTCTACCATCTAGTTT+CGG | 0.391713 | 8_1:-42868511 | Msa1195080:five_prime_UTR |
| CTTGACTTTCCGAAACTAGA+TGG | 0.401068 | 8_1:+42868502 | None:intergenic |
| TAAATATTAGTGAAACATTA+CGG | 0.422498 | 8_1:-42868956 | Msa1195080:five_prime_UTR |
| GATGGCACAAACCCTTTGTT+AGG | 0.426964 | 8_1:+42866767 | None:intergenic |
| TGAGCACATGCCTAGGGGTA+TGG | 0.429091 | 8_1:-42868607 | Msa1195080:five_prime_UTR |
| TGTTTGTACTCTCAATCCTT+TGG | 0.442113 | 8_1:+42869117 | None:intergenic |
| TGCCGCAAGTTTGATTCAAT+GGG | 0.448344 | 8_1:-42868738 | Msa1195080:five_prime_UTR |
| TGTACTCTCAATCCTTTGGC+AGG | 0.451258 | 8_1:+42869121 | None:intergenic |
| TTCTTTGTAGTCATGCTTTG+CGG | 0.453705 | 8_1:-42868713 | Msa1195080:five_prime_UTR |
| AATGAGTATCTTGAAGGAAC+AGG | 0.455830 | 8_1:-42868888 | Msa1195080:five_prime_UTR |
| TTGCAGATTTCGGATATGAA+TGG | 0.468630 | 8_1:-42866470 | Msa1195080:CDS |
| GAATTGAAATGTCATATTGA+TGG | 0.474600 | 8_1:-42866428 | Msa1195080:CDS |
| TAACAAGAGGAGGTGTACTT+TGG | 0.474858 | 8_1:+42868979 | None:intergenic |
| AGCAAGAATGTATTCTCTGC+TGG | 0.493952 | 8_1:-42869152 | None:intergenic |
| AACATTACGGCATGCATCTA+CGG | 0.494329 | 8_1:-42868943 | Msa1195080:five_prime_UTR |
| GAGCACATGCCTAGGGGTAT+GGG | 0.504100 | 8_1:-42868606 | Msa1195080:five_prime_UTR |
| GGTATAACTGTTGCAGGAGA+TGG | 0.504918 | 8_1:+42866800 | None:intergenic |
| TTAGCCAAAGATAAATTACA+TGG | 0.509347 | 8_1:+42866833 | None:intergenic |
| TGATTTATGAGCACATGCCT+AGG | 0.520789 | 8_1:-42868614 | Msa1195080:five_prime_UTR |
| AAGAAGCTCAAAATATTATG+TGG | 0.525327 | 8_1:-42868473 | Msa1195080:five_prime_UTR |
| CTAGGTTGATGCCTAACAAA+GGG | 0.525508 | 8_1:-42866778 | Msa1195080:CDS |
| GACAAATGTCAATGAAAATG+AGG | 0.525546 | 8_1:-42868370 | Msa1195080:five_prime_UTR |
| GTGGCGCCGCATAGAGGTTG+AGG | 0.528015 | 8_1:-42869018 | Msa1195080:five_prime_UTR |
| ATTGAGTTAATGCTGCTGAT+GGG | 0.530195 | 8_1:-42866527 | Msa1195080:CDS |
| GGAAACATGCTTCAGACCAT+TGG | 0.541782 | 8_1:-42868349 | Msa1195080:five_prime_UTR |
| GATTTATGAGCACATGCCTA+GGG | 0.541821 | 8_1:-42868613 | Msa1195080:five_prime_UTR |
| ACTTGATATTGGGGCTGAGA+GGG | 0.547189 | 8_1:-42868445 | Msa1195080:five_prime_UTR |
| GTGGAAATTACTTGATATTG+GGG | 0.556011 | 8_1:-42868454 | Msa1195080:five_prime_UTR |
| TCACTAATATTTATAACAAG+AGG | 0.557518 | 8_1:+42868966 | None:intergenic |
| GATTGAGTTAATGCTGCTGA+TGG | 0.559562 | 8_1:-42866528 | Msa1195080:CDS |
| AGCATTGCGATAAAGAATAC+CGG | 0.559831 | 8_1:+42868542 | None:intergenic |
| AATATATCAATTCAGACCAA+TGG | 0.559963 | 8_1:+42868333 | None:intergenic |
| GAGGCAGTTAATTCGTCTAT+GGG | 0.565783 | 8_1:-42868298 | Msa1195080:intron |
| TGGTTTGAGAGATGAAATGA+TGG | 0.567404 | 8_1:-42866450 | Msa1195080:CDS |
| GAGAGGGTGCGAAAAGGTGT+TGG | 0.567841 | 8_1:-42868429 | Msa1195080:five_prime_UTR |
| GGGGCTGAGAGGGTGCGAAA+AGG | 0.580980 | 8_1:-42868435 | Msa1195080:five_prime_UTR |
| TACTTGATATTGGGGCTGAG+AGG | 0.584455 | 8_1:-42868446 | Msa1195080:five_prime_UTR |
| GAGTATCTTGAAGGAACAGG+TGG | 0.588038 | 8_1:-42868885 | Msa1195080:five_prime_UTR |
| GGTGCGAAAAGGTGTTGGCA+AGG | 0.590379 | 8_1:-42868424 | Msa1195080:five_prime_UTR |
| AAATTCAGATGTAGAAACAA+TGG | 0.596835 | 8_1:-42868394 | Msa1195080:five_prime_UTR |
| TGAGAGTACAAACAATGTGT+TGG | 0.597259 | 8_1:-42869108 | Msa1195080:five_prime_UTR |
| CTAATATTTATAACAAGAGG+AGG | 0.599669 | 8_1:+42868969 | None:intergenic |
| ATCATTGATCACTGAAATGG+AGG | 0.600594 | 8_1:+42868572 | None:intergenic |
| GAATCTTCTCCCATACCCCT+AGG | 0.605803 | 8_1:+42868597 | None:intergenic |
| TGCCCATTGAATCAAACTTG+CGG | 0.606774 | 8_1:+42868736 | None:intergenic |
| CCTAGGTTGATGCCTAACAA+AGG | 0.608082 | 8_1:-42866779 | Msa1195080:CDS |
| GGACAGTAGCTGATGCACAC+TGG | 0.613720 | 8_1:-42866505 | Msa1195080:CDS |
| TTGAGTTAATGCTGCTGATG+GGG | 0.623949 | 8_1:-42866526 | Msa1195080:CDS |
| GTGATCAATGATGATGATGC+CGG | 0.629234 | 8_1:-42868561 | Msa1195080:five_prime_UTR |
| AGGCATGTGCTCATAAATCA+CGG | 0.631426 | 8_1:+42868617 | None:intergenic |
| CCTTTGTTAGGCATCAACCT+AGG | 0.631816 | 8_1:+42866779 | None:intergenic |
| CTGGTATCAAGTCCTGCCAA+AGG | 0.634306 | 8_1:-42869133 | Msa1195080:five_prime_UTR |
| ATAAATTACATGGATCAACA+TGG | 0.663527 | 8_1:+42866843 | None:intergenic |
| CTCCTGCAACAGTTATACCT+AGG | 0.668520 | 8_1:-42866796 | Msa1195080:CDS |
| GCGCCGCATAGAGGTTGAGG+AGG | 0.668856 | 8_1:-42869015 | Msa1195080:five_prime_UTR |
| AGCATTAACTCAATCAGACA+CGG | 0.698370 | 8_1:+42866536 | None:intergenic |
| ATTTATGAGCACATGCCTAG+GGG | 0.718468 | 8_1:-42868612 | Msa1195080:five_prime_UTR |
| ATTCCTCCTCAACCTCTATG+CGG | 0.727553 | 8_1:+42869012 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTAGTGAAACATTA+CGG | - | chr8_1:42866542-42866561 | Msa1195080:CDS | 15.0% |
| !!! | TGATATATTGTAAGTTTTAT+TGG | - | chr8_1:42867301-42867320 | Msa1195080:intron | 15.0% |
| !!! | ATAATCTTTTTGGAAATATT+TGG | - | chr8_1:42868050-42868069 | Msa1195080:intron | 15.0% |
| !! | TGAAATTTGAAGAAAAATTA+TGG | + | chr8_1:42868567-42868586 | None:intergenic | 15.0% |
| !! | TCACTAATATTTATAACAAG+AGG | + | chr8_1:42866535-42866554 | None:intergenic | 20.0% |
| !!! | CATATTTTTTATTAGGCTTA+TGG | + | chr8_1:42866699-42866718 | None:intergenic | 20.0% |
| !! | TAAGCCTAATAAAAAATATG+TGG | - | chr8_1:42866699-42866718 | Msa1195080:CDS | 20.0% |
| !! | ACTACAATTAATCTTCATAT+TGG | + | chr8_1:42866740-42866759 | None:intergenic | 20.0% |
| !! | TTCTACATCTGAATTTAAAT+TGG | + | chr8_1:42867100-42867119 | None:intergenic | 20.0% |
| !! | AAAATAAGCATAAACAACTT+AGG | + | chr8_1:42867263-42867282 | None:intergenic | 20.0% |
| !!! | TACTTTTTTTATCCTTTGAT+AGG | - | chr8_1:42867360-42867379 | Msa1195080:intron | 20.0% |
| !! | TTAAGTCACTATATAGATAA+TGG | - | chr8_1:42867458-42867477 | Msa1195080:intron | 20.0% |
| !! | AATGAAAAATGATAATTCCA+AGG | + | chr8_1:42867864-42867883 | None:intergenic | 20.0% |
| !! | AAATTCCAATAATTGAGAAA+GGG | + | chr8_1:42868526-42868545 | None:intergenic | 20.0% |
| !! | AAAATTCCAATAATTGAGAA+AGG | + | chr8_1:42868527-42868546 | None:intergenic | 20.0% |
| !!! | TGATTTTAATAGTAGTTTGA+GGG | - | chr8_1:42868841-42868860 | Msa1195080:five_prime_UTR | 20.0% |
| ! | CTAATATTTATAACAAGAGG+AGG | + | chr8_1:42866532-42866551 | None:intergenic | 25.0% |
| ! | TTTCTAAATGAGTATCTTGA+AGG | - | chr8_1:42866604-42866623 | Msa1195080:CDS | 25.0% |
| !!! | GTCACCACATATTTTTTATT+AGG | + | chr8_1:42866706-42866725 | None:intergenic | 25.0% |
| ! | TTGCGGATTTATAACATTAA+AGG | - | chr8_1:42866802-42866821 | Msa1195080:CDS | 25.0% |
| ! | ACCAATACTTCTTAAAAAGA+TGG | - | chr8_1:42866842-42866861 | Msa1195080:CDS | 25.0% |
| !!! | ACCATCTTTTTAAGAAGTAT+TGG | + | chr8_1:42866846-42866865 | None:intergenic | 25.0% |
| ! | AAGAAGCTCAAAATATTATG+TGG | - | chr8_1:42867025-42867044 | Msa1195080:intron | 25.0% |
| ! | ATGTGGAAATTACTTGATAT+TGG | - | chr8_1:42867042-42867061 | Msa1195080:intron | 25.0% |
| ! | TGTGGAAATTACTTGATATT+GGG | - | chr8_1:42867043-42867062 | Msa1195080:intron | 25.0% |
| ! | AAATTCAGATGTAGAAACAA+TGG | - | chr8_1:42867104-42867123 | Msa1195080:intron | 25.0% |
| ! | AATATATCAATTCAGACCAA+TGG | + | chr8_1:42867168-42867187 | None:intergenic | 25.0% |
| !!! | TTGATATATTTTTGCAACAG+AGG | - | chr8_1:42867178-42867197 | Msa1195080:intron | 25.0% |
| ! | ACTTACAATATATCAACATG+CGG | + | chr8_1:42867296-42867315 | None:intergenic | 25.0% |
| ! | GTTATTGAATAGAATAGCAA+TGG | + | chr8_1:42867408-42867427 | None:intergenic | 25.0% |
| !! | GGAAGTTTGAAATTATATGA+TGG | - | chr8_1:42867604-42867623 | Msa1195080:intron | 25.0% |
| !! | TTGTTCTATATTTGTTGCTT+AGG | - | chr8_1:42867640-42867659 | Msa1195080:intron | 25.0% |
| ! | TTTAACAAGAAAAGCTCAAA+TGG | - | chr8_1:42867830-42867849 | Msa1195080:intron | 25.0% |
| !! | TCATAATGGCATAATCTTTT+TGG | - | chr8_1:42868040-42868059 | Msa1195080:intron | 25.0% |
| !!! | TTAATGTGAAATTTTGACCT+TGG | - | chr8_1:42868299-42868318 | Msa1195080:exon | 25.0% |
| ! | ATACTAAAATTCAAATGCCA+AGG | + | chr8_1:42868319-42868338 | None:intergenic | 25.0% |
| !!! | TTGGCATTTGAATTTTAGTA+TGG | - | chr8_1:42868318-42868337 | Msa1195080:five_prime_UTR | 25.0% |
| ! | AAAGAATATTAAGTCGGAAT+GGG | - | chr8_1:42868373-42868392 | Msa1195080:five_prime_UTR | 25.0% |
| !! | TCAAATTTCAAATCGTGTTT+TGG | - | chr8_1:42868577-42868596 | Msa1195080:five_prime_UTR | 25.0% |
| ! | AAAATTGTTGAAGAGAATTC+AGG | - | chr8_1:42868626-42868645 | Msa1195080:five_prime_UTR | 25.0% |
| ! | ATAAATTACATGGATCAACA+TGG | + | chr8_1:42868658-42868677 | None:intergenic | 25.0% |
| ! | TGATCCATGTAATTTATCTT+TGG | - | chr8_1:42868661-42868680 | Msa1195080:five_prime_UTR | 25.0% |
| ! | TTAGCCAAAGATAAATTACA+TGG | + | chr8_1:42868668-42868687 | None:intergenic | 25.0% |
| ! | CACAATATGAAAAACAATCA+AGG | + | chr8_1:42868771-42868790 | None:intergenic | 25.0% |
| !!! | GTGATTTTAATAGTAGTTTG+AGG | - | chr8_1:42868840-42868859 | Msa1195080:five_prime_UTR | 25.0% |
| !! | AGGTTAAATATCAAAGTATC+TGG | + | chr8_1:42868899-42868918 | None:intergenic | 25.0% |
| !! | TGTGATAATTTTGCAGATTT+CGG | - | chr8_1:42869018-42869037 | Msa1195080:five_prime_UTR | 25.0% |
| ! | GAATTGAAATGTCATATTGA+TGG | - | chr8_1:42869070-42869089 | Msa1195080:five_prime_UTR | 25.0% |
| TTGAGAAGATGTTGAAAAAG+TGG | - | chr8_1:42866461-42866480 | Msa1195080:CDS | 30.0% | |
| !!! | CTTTTTAAGAAGTATTGGTC+AGG | + | chr8_1:42866841-42866860 | None:intergenic | 30.0% |
| AAAGATGGTCAAAAAATGCA+AGG | - | chr8_1:42866857-42866876 | Msa1195080:intron | 30.0% | |
| ATCATCATTGATCACTGAAA+TGG | + | chr8_1:42866932-42866951 | None:intergenic | 30.0% | |
| GTGGAAATTACTTGATATTG+GGG | - | chr8_1:42867044-42867063 | Msa1195080:intron | 30.0% | |
| GACAAATGTCAATGAAAATG+AGG | - | chr8_1:42867128-42867147 | Msa1195080:intron | 30.0% | |
| !! | ATATATTTTTGCAACAGAGG+AGG | - | chr8_1:42867181-42867200 | Msa1195080:intron | 30.0% |
| ATAAGCATAAACAACTTAGG+AGG | + | chr8_1:42867260-42867279 | None:intergenic | 30.0% | |
| AAGGATGATATTCCTATCAA+AGG | + | chr8_1:42867375-42867394 | None:intergenic | 30.0% | |
| ATTGAATAGAATAGCAATGG+TGG | + | chr8_1:42867405-42867424 | None:intergenic | 30.0% | |
| AGAGATCTTAAAATTGCTGT+TGG | - | chr8_1:42867528-42867547 | Msa1195080:intron | 30.0% | |
| ACAAAACTCTGAACATCTAT+TGG | + | chr8_1:42867740-42867759 | None:intergenic | 30.0% | |
| AAATCTGTCATTGACACAAT+GGG | + | chr8_1:42867797-42867816 | None:intergenic | 30.0% | |
| AAAATCTGTCATTGACACAA+TGG | + | chr8_1:42867798-42867817 | None:intergenic | 30.0% | |
| AGTATGTAATGATAACTTCG+AGG | + | chr8_1:42867923-42867942 | None:intergenic | 30.0% | |
| ! | TGGTTTGAAATTCACCTTTA+AGG | - | chr8_1:42868134-42868153 | Msa1195080:intron | 30.0% |
| ! | GGTTTGAAATTCACCTTTAA+GGG | - | chr8_1:42868135-42868154 | Msa1195080:intron | 30.0% |
| ! | GTTTGAAATTCACCTTTAAG+GGG | - | chr8_1:42868136-42868155 | Msa1195080:intron | 30.0% |
| ACATTGCATATTATATGCAG+AGG | + | chr8_1:42868194-42868213 | None:intergenic | 30.0% | |
| CTAGCCAAAGAATATTAAGT+CGG | - | chr8_1:42868367-42868386 | Msa1195080:five_prime_UTR | 30.0% | |
| CATTCCGACTTAATATTCTT+TGG | + | chr8_1:42868374-42868393 | None:intergenic | 30.0% | |
| CAAAGAATATTAAGTCGGAA+TGG | - | chr8_1:42868372-42868391 | Msa1195080:five_prime_UTR | 30.0% | |
| AAATTATGGTTCACCTAACT+TGG | + | chr8_1:42868553-42868572 | None:intergenic | 30.0% | |
| CATATTGTGAAGACAGTAAT+TGG | - | chr8_1:42868782-42868801 | Msa1195080:five_prime_UTR | 30.0% | |
| TAGTAGTTTGAGGGATAAAA+AGG | - | chr8_1:42868850-42868869 | Msa1195080:five_prime_UTR | 30.0% | |
| TGTTTGTACTCTCAATCCTT+TGG | + | chr8_1:42866384-42866403 | None:intergenic | 35.0% | |
| ! | TGAGAGTACAAACAATGTGT+TGG | - | chr8_1:42866390-42866409 | Msa1195080:CDS | 35.0% |
| AATGAGTATCTTGAAGGAAC+AGG | - | chr8_1:42866610-42866629 | Msa1195080:CDS | 35.0% | |
| TTCTTTGTAGTCATGCTTTG+CGG | - | chr8_1:42866785-42866804 | Msa1195080:CDS | 35.0% | |
| ATCATTGATCACTGAAATGG+AGG | + | chr8_1:42866929-42866948 | None:intergenic | 35.0% | |
| AGCATTGCGATAAAGAATAC+CGG | + | chr8_1:42866959-42866978 | None:intergenic | 35.0% | |
| ! | GTCATTCTACCATCTAGTTT+CGG | - | chr8_1:42866987-42867006 | Msa1195080:intron | 35.0% |
| ! | TAGCAATGGTGGAGTAATTA+AGG | + | chr8_1:42867394-42867413 | None:intergenic | 35.0% |
| AAAGTAGCAATTCCCGTAAA+GGG | - | chr8_1:42867558-42867577 | Msa1195080:intron | 35.0% | |
| GAATCTGTTAAACCTTCACA+AGG | - | chr8_1:42867714-42867733 | Msa1195080:intron | 35.0% | |
| AGAAAAGCTCAAATGGCATT+TGG | - | chr8_1:42867837-42867856 | Msa1195080:intron | 35.0% | |
| CTTTAGCATGTCTTTGCATA+TGG | - | chr8_1:42867896-42867915 | Msa1195080:intron | 35.0% | |
| TATAGGATATATTGCTCCAG+AGG | - | chr8_1:42867989-42868008 | Msa1195080:intron | 35.0% | |
| ! | TTTGGTTGGCTGTTTCATAA+TGG | - | chr8_1:42868026-42868045 | Msa1195080:intron | 35.0% |
| !!! | TTTTTTGTCAAGTAACCCAG+TGG | - | chr8_1:42868114-42868133 | Msa1195080:intron | 35.0% |
| AAGGTGAATTTCAAACCACT+GGG | + | chr8_1:42868132-42868151 | None:intergenic | 35.0% | |
| AAAGGTGAATTTCAAACCAC+TGG | + | chr8_1:42868133-42868152 | None:intergenic | 35.0% | |
| GGGATCATTATCATCATCTA+AGG | - | chr8_1:42868393-42868412 | Msa1195080:five_prime_UTR | 35.0% | |
| ! | TCATCATCTAAGGTAGTTGT+CGG | - | chr8_1:42868403-42868422 | Msa1195080:five_prime_UTR | 35.0% |
| AATCCACTAAAGCTGATCTT+AGG | - | chr8_1:42868450-42868469 | Msa1195080:five_prime_UTR | 35.0% | |
| CTTTGCCCTTTCTCAATTAT+TGG | - | chr8_1:42868518-42868537 | Msa1195080:five_prime_UTR | 35.0% | |
| ! | TTGGAATTTTCTGCCAAGTT+AGG | - | chr8_1:42868537-42868556 | Msa1195080:five_prime_UTR | 35.0% |
| AAGGACAAAAATTGCACAGA+TGG | + | chr8_1:42868752-42868771 | None:intergenic | 35.0% | |
| TCACACAAGCATCAAGAAAA+AGG | + | chr8_1:42868919-42868938 | None:intergenic | 35.0% | |
| ! | TTTTTCTTGATGCTTGTGTG+AGG | - | chr8_1:42868918-42868937 | Msa1195080:five_prime_UTR | 35.0% |
| AGCATTAACTCAATCAGACA+CGG | + | chr8_1:42868965-42868984 | None:intergenic | 35.0% | |
| ATTGAGTTAATGCTGCTGAT+GGG | - | chr8_1:42868971-42868990 | Msa1195080:five_prime_UTR | 35.0% | |
| TTGCAGATTTCGGATATGAA+TGG | - | chr8_1:42869028-42869047 | Msa1195080:five_prime_UTR | 35.0% | |
| TGGTTTGAGAGATGAAATGA+TGG | - | chr8_1:42869048-42869067 | Msa1195080:five_prime_UTR | 35.0% | |
| ! | TAACAAGAGGAGGTGTACTT+TGG | + | chr8_1:42866522-42866541 | None:intergenic | 40.0% |
| AACATTACGGCATGCATCTA+CGG | - | chr8_1:42866555-42866574 | Msa1195080:CDS | 40.0% | |
| TTGCCGCAAGTTTGATTCAA+TGG | - | chr8_1:42866759-42866778 | Msa1195080:CDS | 40.0% | |
| TGCCGCAAGTTTGATTCAAT+GGG | - | chr8_1:42866760-42866779 | Msa1195080:CDS | 40.0% | |
| TGCCCATTGAATCAAACTTG+CGG | + | chr8_1:42866765-42866784 | None:intergenic | 40.0% | |
| AGGCATGTGCTCATAAATCA+CGG | + | chr8_1:42866884-42866903 | None:intergenic | 40.0% | |
| TGATTTATGAGCACATGCCT+AGG | - | chr8_1:42866884-42866903 | Msa1195080:intron | 40.0% | |
| GATTTATGAGCACATGCCTA+GGG | - | chr8_1:42866885-42866904 | Msa1195080:intron | 40.0% | |
| ATTTATGAGCACATGCCTAG+GGG | - | chr8_1:42866886-42866905 | Msa1195080:intron | 40.0% | |
| ! | GTGATCAATGATGATGATGC+CGG | - | chr8_1:42866937-42866956 | Msa1195080:intron | 40.0% |
| CTTGACTTTCCGAAACTAGA+TGG | + | chr8_1:42866999-42867018 | None:intergenic | 40.0% | |
| GAGGCAGTTAATTCGTCTAT+GGG | - | chr8_1:42867200-42867219 | Msa1195080:intron | 40.0% | |
| GTTCGTGCAATTGAGAACAT+TGG | + | chr8_1:42867234-42867253 | None:intergenic | 40.0% | |
| GAAAGTAGCAATTCCCGTAA+AGG | - | chr8_1:42867557-42867576 | Msa1195080:intron | 40.0% | |
| ATGCCAATGTGTTCATAGGA+TGG | - | chr8_1:42867583-42867602 | Msa1195080:intron | 40.0% | |
| CTTCCATCCTATGAACACAT+TGG | + | chr8_1:42867589-42867608 | None:intergenic | 40.0% | |
| !! | AACATCTATTGGCCTTGTGA+AGG | + | chr8_1:42867729-42867748 | None:intergenic | 40.0% |
| ! | CTTCTCAGCAATGGTGTTTT+GGG | + | chr8_1:42867964-42867983 | None:intergenic | 40.0% |
| ! | TCTTCTCAGCAATGGTGTTT+TGG | + | chr8_1:42867965-42867984 | None:intergenic | 40.0% |
| AAAACACCATTGCTGAGAAG+AGG | - | chr8_1:42867964-42867983 | Msa1195080:intron | 40.0% | |
| AAACACCATTGCTGAGAAGA+GGG | - | chr8_1:42867965-42867984 | Msa1195080:intron | 40.0% | |
| !! | TGTTCCGCAGAAATTTTGGT+TGG | - | chr8_1:42868012-42868031 | Msa1195080:intron | 40.0% |
| ACAGCCAACCAAAATTTCTG+CGG | + | chr8_1:42868019-42868038 | None:intergenic | 40.0% | |
| ! | ACCTTTAAGGGGAATAAGTG+AGG | - | chr8_1:42868147-42868166 | Msa1195080:intron | 40.0% |
| ACCTCACTTATTCCCCTTAA+AGG | + | chr8_1:42868151-42868170 | None:intergenic | 40.0% | |
| TGCAATGTGAGTTAAGCTCA+CGG | - | chr8_1:42868206-42868225 | Msa1195080:intron | 40.0% | |
| ! | CTTCCTAAGATCAGCTTTAG+TGG | + | chr8_1:42868456-42868475 | None:intergenic | 40.0% |
| AACCTAGGTATAACTGTTGC+AGG | + | chr8_1:42868707-42868726 | None:intergenic | 40.0% | |
| !! | CTAGGTTGATGCCTAACAAA+GGG | - | chr8_1:42868720-42868739 | Msa1195080:five_prime_UTR | 40.0% |
| GATTGAGTTAATGCTGCTGA+TGG | - | chr8_1:42868970-42868989 | Msa1195080:five_prime_UTR | 40.0% | |
| TTGAGTTAATGCTGCTGATG+GGG | - | chr8_1:42868972-42868991 | Msa1195080:five_prime_UTR | 40.0% | |
| TGTACTCTCAATCCTTTGGC+AGG | + | chr8_1:42866380-42866399 | None:intergenic | 45.0% | |
| ATTCCTCCTCAACCTCTATG+CGG | + | chr8_1:42866489-42866508 | None:intergenic | 45.0% | |
| GAGTATCTTGAAGGAACAGG+TGG | - | chr8_1:42866613-42866632 | Msa1195080:CDS | 45.0% | |
| TACTTGATATTGGGGCTGAG+AGG | - | chr8_1:42867052-42867071 | Msa1195080:intron | 45.0% | |
| ACTTGATATTGGGGCTGAGA+GGG | - | chr8_1:42867053-42867072 | Msa1195080:intron | 45.0% | |
| GGAAACATGCTTCAGACCAT+TGG | - | chr8_1:42867149-42867168 | Msa1195080:intron | 45.0% | |
| GGAGGCAGTTAATTCGTCTA+TGG | - | chr8_1:42867199-42867218 | Msa1195080:intron | 45.0% | |
| ACATTGGCATTGCCCTTTAC+GGG | + | chr8_1:42867573-42867592 | None:intergenic | 45.0% | |
| CACATTGGCATTGCCCTTTA+CGG | + | chr8_1:42867574-42867593 | None:intergenic | 45.0% | |
| GGCAATGCCAATGTGTTCAT+AGG | - | chr8_1:42867579-42867598 | Msa1195080:intron | 45.0% | |
| CTCAAATGGCATTTGGACCT+TGG | - | chr8_1:42867844-42867863 | Msa1195080:intron | 45.0% | |
| TATAGCCCTCTTCTCAGCAA+TGG | + | chr8_1:42867973-42867992 | None:intergenic | 45.0% | |
| ATTGCTGAGAAGAGGGCTAT+AGG | - | chr8_1:42867972-42867991 | Msa1195080:intron | 45.0% | |
| AAATTTCTGCGGAACACCTC+TGG | + | chr8_1:42868008-42868027 | None:intergenic | 45.0% | |
| !! | GAGGTGTTCCGCAGAAATTT+TGG | - | chr8_1:42868008-42868027 | Msa1195080:intron | 45.0% |
| AGGGGAATAAGTGAGGTGTA+TGG | - | chr8_1:42868154-42868173 | Msa1195080:intron | 45.0% | |
| GGGGAATAAGTGAGGTGTAT+GGG | - | chr8_1:42868155-42868174 | Msa1195080:intron | 45.0% | |
| GGGAATAAGTGAGGTGTATG+GGG | - | chr8_1:42868156-42868175 | Msa1195080:intron | 45.0% | |
| GCAATGTGAGTTAAGCTCAC+GGG | - | chr8_1:42868207-42868226 | Msa1195080:intron | 45.0% | |
| GTTGCAGCAGCATACATTAC+TGG | - | chr8_1:42868481-42868500 | Msa1195080:five_prime_UTR | 45.0% | |
| GGTATAACTGTTGCAGGAGA+TGG | + | chr8_1:42868701-42868720 | None:intergenic | 45.0% | |
| CTCCTGCAACAGTTATACCT+AGG | - | chr8_1:42868702-42868721 | Msa1195080:five_prime_UTR | 45.0% | |
| CCTTTGTTAGGCATCAACCT+AGG | + | chr8_1:42868722-42868741 | None:intergenic | 45.0% | |
| !! | CCTAGGTTGATGCCTAACAA+AGG | - | chr8_1:42868719-42868738 | Msa1195080:five_prime_UTR | 45.0% |
| GATGGCACAAACCCTTTGTT+AGG | + | chr8_1:42868734-42868753 | None:intergenic | 45.0% | |
| CTGGTATCAAGTCCTGCCAA+AGG | - | chr8_1:42866365-42866384 | Msa1195080:CDS | 50.0% | |
| GAATCTTCTCCCATACCCCT+AGG | + | chr8_1:42866904-42866923 | None:intergenic | 50.0% | |
| TGAGTTAAGCTCACGGGTCA+CGG | - | chr8_1:42868213-42868232 | Msa1195080:intron | 50.0% | |
| GAAAAAGTGGCGCCGCATAG+AGG | - | chr8_1:42866474-42866493 | Msa1195080:CDS | 55.0% | |
| TGAGCACATGCCTAGGGGTA+TGG | - | chr8_1:42866891-42866910 | Msa1195080:intron | 55.0% | |
| ! | GAGCACATGCCTAGGGGTAT+GGG | - | chr8_1:42866892-42866911 | Msa1195080:intron | 55.0% |
| ! | GAGAGGGTGCGAAAAGGTGT+TGG | - | chr8_1:42867069-42867088 | Msa1195080:intron | 55.0% |
| !! | GGTGCGAAAAGGTGTTGGCA+AGG | - | chr8_1:42867074-42867093 | Msa1195080:intron | 55.0% |
| GGTGTATGGGGTTCGAACGT+CGG | - | chr8_1:42868168-42868187 | Msa1195080:intron | 55.0% | |
| GGACAGTAGCTGATGCACAC+TGG | - | chr8_1:42868993-42869012 | Msa1195080:five_prime_UTR | 55.0% | |
| GTTAAGCTCACGGGTCACGG+CGG | - | chr8_1:42868216-42868235 | Msa1195080:intron | 60.0% | |
| GTGGCGCCGCATAGAGGTTG+AGG | - | chr8_1:42866480-42866499 | Msa1195080:CDS | 65.0% | |
| GCGCCGCATAGAGGTTGAGG+AGG | - | chr8_1:42866483-42866502 | Msa1195080:CDS | 65.0% | |
| ! | GGGGCTGAGAGGGTGCGAAA+AGG | - | chr8_1:42867063-42867082 | Msa1195080:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 42866361 | 42869159 | 42866361 | ID=Msa1195080;Name=Msa1195080 |
| chr8_1 | mRNA | 42866361 | 42869159 | 42866361 | ID=Msa1195080-mRNA-1;Parent=Msa1195080;Name=Msa1195080-mRNA-1;_AED=0.51;_eAED=0.51;_QI=857|0|0.5|0.5|0|0|2|0|171 |
| chr8_1 | exon | 42866361 | 42866872 | 42866361 | ID=Msa1195080-mRNA-1:exon:13828;Parent=Msa1195080-mRNA-1 |
| chr8_1 | exon | 42868299 | 42869159 | 42868299 | ID=Msa1195080-mRNA-1:exon:13827;Parent=Msa1195080-mRNA-1 |
| chr8_1 | five_prime_UTR | 42868303 | 42869159 | 42868303 | ID=Msa1195080-mRNA-1:five_prime_utr;Parent=Msa1195080-mRNA-1 |
| chr8_1 | CDS | 42868299 | 42868302 | 42868299 | ID=Msa1195080-mRNA-1:cds;Parent=Msa1195080-mRNA-1 |
| chr8_1 | CDS | 42866361 | 42866872 | 42866361 | ID=Msa1195080-mRNA-1:cds;Parent=Msa1195080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
