Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1266820 | XP_003609879.2 | 94.242 | 330 | 10 | 2 | 1 | 329 | 2 | 323 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1266820 | sp|Q6MEE7|TRUA1_PARUW | 39.098 | 266 | 146 | 6 | 43 | 306 | 4 | 255 | 8.84e-62 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1266820 | A0A396IFU3 | 94.242 | 330 | 10 | 2 | 1 | 329 | 2 | 323 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1266820 | Msa1409320 | 0.917412 | 5.477339e-86 | -8.615850e-47 |
| Msa1266820 | Msa1415160 | 0.848948 | 4.425221e-60 | -8.615850e-47 |
| Msa1219480 | Msa1266820 | 0.867664 | 1.158532e-65 | -8.615850e-47 |
| Msa1219490 | Msa1266820 | 0.878291 | 3.161669e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1266820 | MtrunA17_Chr4g0069331 | 94.242 | 330 | 10 | 2 | 1 | 329 | 2 | 323 | 0.0 | 640 |
| Msa1266820 | MtrunA17_Chr1g0201101 | 28.070 | 285 | 152 | 10 | 23 | 275 | 67 | 330 | 1.70e-16 | 80.1 |
| Msa1266820 | MtrunA17_Chr2g0277101 | 27.320 | 194 | 108 | 6 | 42 | 217 | 43 | 221 | 6.22e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1266820 | AT3G06950.1 | 66.349 | 315 | 91 | 4 | 17 | 329 | 21 | 322 | 1.10e-149 | 424 |
| Msa1266820 | AT1G34150.1 | 28.682 | 258 | 133 | 8 | 45 | 276 | 94 | 326 | 8.57e-16 | 78.2 |
| Msa1266820 | AT1G09800.1 | 23.582 | 335 | 161 | 11 | 42 | 301 | 56 | 370 | 1.35e-11 | 65.5 |
| Msa1266820 | AT1G09800.2 | 23.582 | 335 | 161 | 11 | 42 | 301 | 56 | 370 | 1.35e-11 | 65.5 |
Find 86 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATTGTTCCACATATTT+TGG | 0.121197 | 8_2:+71847820 | Msa1266820:CDS |
| GTGATCATTGAACTAAATTT+TGG | 0.137694 | 8_2:-71848217 | None:intergenic |
| GTCTAAAATTTAAATATTAA+TGG | 0.143383 | 8_2:+71848040 | Msa1266820:three_prime_UTR |
| TATTGAGTTTATACATATTA+TGG | 0.228707 | 8_2:-71847345 | None:intergenic |
| ACCGTTTAATTACGACAATT+TGG | 0.242990 | 8_2:+71847153 | Msa1266820:CDS |
| AAAATATGTGGAACAATATT+AGG | 0.254864 | 8_2:-71847818 | None:intergenic |
| GGCTGTTTCAGAGATGTAAT+TGG | 0.268432 | 8_2:+71848160 | Msa1266820:three_prime_UTR |
| ACATATTATGGTAAGCAAAA+TGG | 0.289437 | 8_2:-71847333 | None:intergenic |
| CACTTATAGCCATCTTGGTT+GGG | 0.298483 | 8_2:-71845865 | None:intergenic |
| CTTCATAATCATTATATTGC+TGG | 0.339093 | 8_2:+71848102 | Msa1266820:three_prime_UTR |
| CCGATTTGATGTGAAAGAAA+TGG | 0.378687 | 8_2:+71847477 | Msa1266820:CDS |
| GGAGCAGTGGAGCCTAAAAT+AGG | 0.386174 | 8_2:+71848123 | Msa1266820:three_prime_UTR |
| TCCTGCTTGCACCAACCAAC+TGG | 0.392400 | 8_2:-71846996 | None:intergenic |
| TCCAAATTGTCGTAATTAAA+CGG | 0.394286 | 8_2:-71847154 | None:intergenic |
| TGATGCAGGAGTCCATGCTT+GGG | 0.401400 | 8_2:+71847020 | Msa1266820:CDS |
| GTCGCATTGTTGCTTCAGAT+TGG | 0.418270 | 8_2:+71847779 | Msa1266820:CDS |
| AAAATATGCTTCACTGGATC+TGG | 0.422038 | 8_2:-71847454 | None:intergenic |
| CCACTTATAGCCATCTTGGT+TGG | 0.431380 | 8_2:-71845866 | None:intergenic |
| GAAGATTGAATACCATGTTT+CGG | 0.438346 | 8_2:-71847688 | None:intergenic |
| ATGAATGATGCCTGCATAAC+GGG | 0.440243 | 8_2:-71845914 | None:intergenic |
| ATCTGGTACGCGATCATTGT+GGG | 0.445378 | 8_2:-71847437 | None:intergenic |
| GCTGTTTCAGAGATGTAATT+GGG | 0.445502 | 8_2:+71848161 | Msa1266820:three_prime_UTR |
| GGATAAAGAAGAAGAAGAAT+AGG | 0.445585 | 8_2:+71845645 | Msa1266820:five_prime_UTR |
| AAGCAAAATGGCGCTGGAAC+GGG | 0.448936 | 8_2:-71847321 | None:intergenic |
| GCGTGGAATTCAGCTGATGC+AGG | 0.451298 | 8_2:-71847238 | None:intergenic |
| CCATTTCTTTCACATCAAAT+CGG | 0.454616 | 8_2:-71847477 | None:intergenic |
| GGCGCCACTTATAGCCATCT+TGG | 0.459785 | 8_2:-71845870 | None:intergenic |
| CTGATGCAGGAGTCCATGCT+TGG | 0.463793 | 8_2:+71847019 | Msa1266820:CDS |
| AGGGAAGTTGGAGATGGAAT+CGG | 0.463879 | 8_2:-71845717 | None:intergenic |
| AATCGGAAAATATGCTTCAC+TGG | 0.470992 | 8_2:-71847460 | None:intergenic |
| AGGAGTCCATGCTTGGGGTC+AGG | 0.479875 | 8_2:+71847026 | Msa1266820:CDS |
| TCCAGTTGGTTGGTGCAAGC+AGG | 0.481534 | 8_2:+71846995 | Msa1266820:CDS |
| TACGATGGAACCCGTTATGC+AGG | 0.483247 | 8_2:+71845904 | Msa1266820:CDS |
| CATACAGAAAGTAGGGAAGT+TGG | 0.487689 | 8_2:-71845729 | None:intergenic |
| AATTTGTTATCGTGTGAGGA+AGG | 0.488875 | 8_2:+71845558 | Msa1266820:five_prime_UTR |
| CATTCATACATACAGAAAGT+AGG | 0.492432 | 8_2:-71845737 | None:intergenic |
| ACAATAGAATTGAATAAGTG+TGG | 0.492623 | 8_2:+71845624 | Msa1266820:five_prime_UTR |
| CAGCTAGAAGTTGAAGGCTC+GGG | 0.495832 | 8_2:+71847647 | Msa1266820:CDS |
| GAATAGGCAGTGAAATGAGT+TGG | 0.498812 | 8_2:+71845661 | Msa1266820:exon |
| AATAGGCAGTGAAATGAGTT+GGG | 0.520368 | 8_2:+71845662 | Msa1266820:exon |
| ATTCATACATACAGAAAGTA+GGG | 0.521703 | 8_2:-71845736 | None:intergenic |
| TATGGTAAGCAAAATGGCGC+TGG | 0.522963 | 8_2:-71847327 | None:intergenic |
| TTAGAGCAACAAAGCTTCAA+AGG | 0.523117 | 8_2:+71846965 | Msa1266820:CDS |
| GAAAGTAGGGAAGTTGGAGA+TGG | 0.527349 | 8_2:-71845723 | None:intergenic |
| GCAGCTAGAAGTTGAAGGCT+CGG | 0.527801 | 8_2:+71847646 | Msa1266820:CDS |
| GGGTTCCATCGTAAGACAAA+AGG | 0.528252 | 8_2:-71845894 | None:intergenic |
| AGTCACTTGTTGCCTCCACC+AGG | 0.529491 | 8_2:+71847929 | Msa1266820:CDS |
| TGAAAATTTGTTATCGTGTG+AGG | 0.530930 | 8_2:+71845554 | None:intergenic |
| GGTGCAAGCAGGACTGATGC+AGG | 0.533920 | 8_2:+71847006 | Msa1266820:CDS |
| AGCAACAAAGCTTCAAAGGA+AGG | 0.536541 | 8_2:+71846969 | Msa1266820:CDS |
| TAAGCAAAATGGCGCTGGAA+CGG | 0.543419 | 8_2:-71847322 | None:intergenic |
| TGTATTCTAATGATAATACT+AGG | 0.545844 | 8_2:+71848003 | Msa1266820:exon |
| TTTGCAGGGCAACCTGGTGG+AGG | 0.546040 | 8_2:-71847941 | None:intergenic |
| CTACGGCGCATTGTACAGTA+GGG | 0.547422 | 8_2:-71846930 | None:intergenic |
| CATCAGCTGAATTCCACGCT+CGG | 0.550432 | 8_2:+71847242 | Msa1266820:CDS |
| CCAACCAAGATGGCTATAAG+TGG | 0.555642 | 8_2:+71845866 | Msa1266820:CDS |
| TTTGGAGAGTCGTGATCGCA+AGG | 0.562237 | 8_2:+71847838 | Msa1266820:CDS |
| TCACGACTCTCCAAAATATG+TGG | 0.564125 | 8_2:-71847830 | None:intergenic |
| ATTTGTTATCGTGTGAGGAA+GGG | 0.565961 | 8_2:+71845559 | Msa1266820:five_prime_UTR |
| ATCTGACCTGACCCCAAGCA+TGG | 0.568094 | 8_2:-71847032 | None:intergenic |
| TATGTGGAACAATATTAGGA+GGG | 0.569490 | 8_2:-71847814 | None:intergenic |
| TCATTATATTGCTGGAGCAG+TGG | 0.572054 | 8_2:+71848110 | Msa1266820:three_prime_UTR |
| ATATGTGGAACAATATTAGG+AGG | 0.574988 | 8_2:-71847815 | None:intergenic |
| TTCCATCGTAAGACAAAAGG+AGG | 0.577863 | 8_2:-71845891 | None:intergenic |
| AGAGTTCACGCTGCTTTGAA+CGG | 0.578649 | 8_2:+71847178 | Msa1266820:CDS |
| CGTGGAATTCAGCTGATGCA+GGG | 0.588035 | 8_2:-71847237 | None:intergenic |
| TCTCTAACTCGTATATCAGA+AGG | 0.591774 | 8_2:-71847208 | None:intergenic |
| GATCTGGTACGCGATCATTG+TGG | 0.593882 | 8_2:-71847438 | None:intergenic |
| AGGAAGGATCTCCAGTTGGT+TGG | 0.596611 | 8_2:+71846985 | Msa1266820:CDS |
| GCGCTGGAACGGGTCCATGA+TGG | 0.598181 | 8_2:-71847311 | None:intergenic |
| TGCTATTATCTGCCACCACA+TGG | 0.601083 | 8_2:+71847875 | Msa1266820:CDS |
| GAATTCTTCAAGTGATGTTG+TGG | 0.605338 | 8_2:+71845834 | Msa1266820:CDS |
| GAAGTGAAGCCCAACCAAGA+TGG | 0.606632 | 8_2:+71845856 | Msa1266820:CDS |
| AATGAATGATGCCTGCATAA+CGG | 0.610145 | 8_2:-71845915 | None:intergenic |
| ATTGTTGCTTCAGATTGGAA+AGG | 0.610327 | 8_2:+71847784 | Msa1266820:CDS |
| GATTTACAGTGATACCATCA+TGG | 0.611998 | 8_2:+71847297 | Msa1266820:CDS |
| TCATACCATAAGAAAATGCA+AGG | 0.613094 | 8_2:+71847979 | Msa1266820:CDS |
| TCAAAGGAAGGATCTCCAGT+TGG | 0.617658 | 8_2:+71846981 | Msa1266820:CDS |
| AGCAGCAGCAACAACGTCAG+TGG | 0.636505 | 8_2:+71845689 | Msa1266820:CDS |
| GATGCAGGAGTCCATGCTTG+GGG | 0.645475 | 8_2:+71847021 | Msa1266820:CDS |
| TACGGCGCATTGTACAGTAG+GGG | 0.655013 | 8_2:-71846929 | None:intergenic |
| ATGTGGAACAATATTAGGAG+GGG | 0.656496 | 8_2:-71847813 | None:intergenic |
| GTATAGACAAGTCCGAAACA+TGG | 0.664436 | 8_2:+71847676 | Msa1266820:CDS |
| ACGGCGCATTGTACAGTAGG+GGG | 0.692690 | 8_2:-71846928 | None:intergenic |
| GAAACAAGACAAAGACCATG+TGG | 0.703286 | 8_2:-71847890 | None:intergenic |
| ACAAGACAAAGACCATGTGG+TGG | 0.708267 | 8_2:-71847887 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAAAAAACTTGAT+GGG | - | chr8_2:71845600-71845619 | None:intergenic | 10.0% |
| !! | AATAAAAATAAAAAACTTGA+TGG | - | chr8_2:71845601-71845620 | None:intergenic | 10.0% |
| !!! | GTCTAAAATTTAAATATTAA+TGG | + | chr8_2:71848040-71848059 | Msa1266820:three_prime_UTR | 10.0% |
| !! | AACTAAAATAAGTATAGTAT+AGG | + | chr8_2:71846005-71846024 | Msa1266820:intron | 15.0% |
| !! | CCAAATATAAAAATCTAATA+TGG | - | chr8_2:71846153-71846172 | None:intergenic | 15.0% |
| !!! | CCATATTAGATTTTTATATT+TGG | + | chr8_2:71846150-71846169 | Msa1266820:intron | 15.0% |
| !! | CCTAATATAAAAATCTAATA+CGG | - | chr8_2:71846320-71846339 | None:intergenic | 15.0% |
| !! | TATTGAGTTTATACATATTA+TGG | - | chr8_2:71847348-71847367 | None:intergenic | 15.0% |
| !!! | CAACAATAACTTTTTTAATT+TGG | - | chr8_2:71847718-71847737 | None:intergenic | 15.0% |
| !!! | CCGTATTAGATTTTTATATT+AGG | + | chr8_2:71846317-71846336 | Msa1266820:intron | 20.0% |
| !!! | TGTTTTTATTCATTAAATGC+TGG | - | chr8_2:71846829-71846848 | None:intergenic | 20.0% |
| !!! | TCTAATTAAAGCTTTTTCTA+CGG | - | chr8_2:71846950-71846969 | None:intergenic | 20.0% |
| !! | TTTCAAAAAATAAACCAAGA+AGG | - | chr8_2:71847583-71847602 | None:intergenic | 20.0% |
| !! | AAAATATGTGGAACAATATT+AGG | - | chr8_2:71847821-71847840 | None:intergenic | 20.0% |
| !!! | TAATATTGTTCCACATATTT+TGG | + | chr8_2:71847820-71847839 | Msa1266820:CDS | 20.0% |
| !! | TGTATTCTAATGATAATACT+AGG | + | chr8_2:71848003-71848022 | Msa1266820:exon | 20.0% |
| ! | ACAATAGAATTGAATAAGTG+TGG | + | chr8_2:71845624-71845643 | Msa1266820:five_prime_UTR | 25.0% |
| ! | ATTCATACATACAGAAAGTA+GGG | - | chr8_2:71845739-71845758 | None:intergenic | 25.0% |
| ! | AAGTTTCGGATAAAAAAGAT+AGG | - | chr8_2:71846413-71846432 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTATCCGAAACTT+AGG | + | chr8_2:71846413-71846432 | Msa1266820:intron | 25.0% |
| ! | TGCAATATGCAAGTAATATT+GGG | - | chr8_2:71846445-71846464 | None:intergenic | 25.0% |
| ! | ATGCAATATGCAAGTAATAT+TGG | - | chr8_2:71846446-71846465 | None:intergenic | 25.0% |
| !!! | ACTTGGATTTGGTATTTTTA+AGG | - | chr8_2:71846685-71846704 | None:intergenic | 25.0% |
| ! | TAAAAATACCAAATCCAAGT+TGG | + | chr8_2:71846685-71846704 | Msa1266820:intron | 25.0% |
| !!! | TTTTTCTCCATTATTTTGAC+TGG | + | chr8_2:71846872-71846891 | Msa1266820:intron | 25.0% |
| ! | TTATAACTTATTGTGACTGT+AGG | + | chr8_2:71847114-71847133 | Msa1266820:intron | 25.0% |
| ! | TCCAAATTGTCGTAATTAAA+CGG | - | chr8_2:71847157-71847176 | None:intergenic | 25.0% |
| ! | ACATATTATGGTAAGCAAAA+TGG | - | chr8_2:71847336-71847355 | None:intergenic | 25.0% |
| !! | AAGCTGCAAGATATTTTATT+GGG | + | chr8_2:71847383-71847402 | Msa1266820:CDS | 25.0% |
| !! | ATATATCTGTTTGCATTTTC+AGG | + | chr8_2:71847757-71847776 | Msa1266820:intron | 25.0% |
| ! | CTTCATAATCATTATATTGC+TGG | + | chr8_2:71848102-71848121 | Msa1266820:three_prime_UTR | 25.0% |
| !! | AAAAGCTAAACTCCTATTTT+AGG | - | chr8_2:71848138-71848157 | None:intergenic | 25.0% |
| !!! | AAAATAGGAGTTTAGCTTTT+AGG | + | chr8_2:71848138-71848157 | Msa1266820:three_prime_UTR | 25.0% |
| !!! | AAATAGGAGTTTAGCTTTTA+GGG | + | chr8_2:71848139-71848158 | Msa1266820:three_prime_UTR | 25.0% |
| !! | GTGATCATTGAACTAAATTT+TGG | - | chr8_2:71848220-71848239 | None:intergenic | 25.0% |
| GGATAAAGAAGAAGAAGAAT+AGG | + | chr8_2:71845645-71845664 | Msa1266820:five_prime_UTR | 30.0% | |
| CATTCATACATACAGAAAGT+AGG | - | chr8_2:71845740-71845759 | None:intergenic | 30.0% | |
| AAGAAGACAGAGAAAAAAGA+GGG | - | chr8_2:71845773-71845792 | None:intergenic | 30.0% | |
| ATAGTATAGGCTCTTAATGT+TGG | + | chr8_2:71846018-71846037 | Msa1266820:intron | 30.0% | |
| CACTCTTTATGAACTCTTAT+TGG | + | chr8_2:71846215-71846234 | Msa1266820:intron | 30.0% | |
| TGGTGCATGTATATAAATAG+TGG | + | chr8_2:71846269-71846288 | Msa1266820:intron | 30.0% | |
| GGTGCATGTATATAAATAGT+GGG | + | chr8_2:71846270-71846289 | Msa1266820:intron | 30.0% | |
| AAAATCTAATACGGTATCTG+AGG | - | chr8_2:71846311-71846330 | None:intergenic | 30.0% | |
| TTGGGAAAAAACCTAAGTTT+CGG | - | chr8_2:71846427-71846446 | None:intergenic | 30.0% | |
| GCATTTCTCTCAAAGTAAAT+AGG | - | chr8_2:71846544-71846563 | None:intergenic | 30.0% | |
| !! | AAAATGGTGTCACAAACTTA+AGG | - | chr8_2:71846613-71846632 | None:intergenic | 30.0% |
| !! | ATTTTGAGCTTTATCCAACT+TGG | - | chr8_2:71846702-71846721 | None:intergenic | 30.0% |
| !! | GGGATTTGGTATTCTTTTTA+TGG | - | chr8_2:71846768-71846787 | None:intergenic | 30.0% |
| GAAAACTACACCTTTCTATA+TGG | - | chr8_2:71846807-71846826 | None:intergenic | 30.0% | |
| ACCGTTTAATTACGACAATT+TGG | + | chr8_2:71847153-71847172 | Msa1266820:CDS | 30.0% | |
| ! | GAAGCTGCAAGATATTTTAT+TGG | + | chr8_2:71847382-71847401 | Msa1266820:CDS | 30.0% |
| CCATTTCTTTCACATCAAAT+CGG | - | chr8_2:71847480-71847499 | None:intergenic | 30.0% | |
| TAATAATGTTCACAGCAGTA+CGG | - | chr8_2:71847530-71847549 | None:intergenic | 30.0% | |
| TTACCATGTTTATACCTTCT+TGG | + | chr8_2:71847566-71847585 | Msa1266820:intron | 30.0% | |
| ! | AAACCAAGAAGGTATAAACA+TGG | - | chr8_2:71847572-71847591 | None:intergenic | 30.0% |
| GAAGATTGAATACCATGTTT+CGG | - | chr8_2:71847691-71847710 | None:intergenic | 30.0% | |
| TATGTGGAACAATATTAGGA+GGG | - | chr8_2:71847817-71847836 | None:intergenic | 30.0% | |
| ATATGTGGAACAATATTAGG+AGG | - | chr8_2:71847818-71847837 | None:intergenic | 30.0% | |
| TCATACCATAAGAAAATGCA+AGG | + | chr8_2:71847979-71847998 | Msa1266820:CDS | 30.0% | |
| ! | TACAACCTTGCATTTTCTTA+TGG | - | chr8_2:71847987-71848006 | None:intergenic | 30.0% |
| !! | AATTTGTTATCGTGTGAGGA+AGG | + | chr8_2:71845558-71845577 | Msa1266820:five_prime_UTR | 35.0% |
| !! | ATTTGTTATCGTGTGAGGAA+GGG | + | chr8_2:71845559-71845578 | Msa1266820:five_prime_UTR | 35.0% |
| AATAGGCAGTGAAATGAGTT+GGG | + | chr8_2:71845662-71845681 | Msa1266820:exon | 35.0% | |
| GAAGAAGACAGAGAAAAAAG+AGG | - | chr8_2:71845774-71845793 | None:intergenic | 35.0% | |
| GAATTCTTCAAGTGATGTTG+TGG | + | chr8_2:71845834-71845853 | Msa1266820:CDS | 35.0% | |
| AATGAATGATGCCTGCATAA+CGG | - | chr8_2:71845918-71845937 | None:intergenic | 35.0% | |
| AATCTCACGTTCAATGCTAT+TGG | + | chr8_2:71846243-71846262 | Msa1266820:intron | 35.0% | |
| ATCTCACGTTCAATGCTATT+GGG | + | chr8_2:71846244-71846263 | Msa1266820:intron | 35.0% | |
| CTTTACGAAAACGACTTGTA+AGG | + | chr8_2:71846350-71846369 | Msa1266820:intron | 35.0% | |
| GAAAACGACTTGTAAGGTAA+GGG | + | chr8_2:71846356-71846375 | Msa1266820:intron | 35.0% | |
| AAAACGACTTGTAAGGTAAG+GGG | + | chr8_2:71846357-71846376 | Msa1266820:intron | 35.0% | |
| TCTCAAACATTGTAACCATG+AGG | + | chr8_2:71846494-71846513 | Msa1266820:intron | 35.0% | |
| !! | TTTGTGACACCATTTTTGTG+AGG | + | chr8_2:71846617-71846636 | Msa1266820:intron | 35.0% |
| ! | AGCTTTATCCAACTTGGATT+TGG | - | chr8_2:71846696-71846715 | None:intergenic | 35.0% |
| ! | TGAATGAAGTTTTCAGCTTG+AGG | + | chr8_2:71846732-71846751 | Msa1266820:intron | 35.0% |
| GACTCTTGATCCATATAGAA+AGG | + | chr8_2:71846794-71846813 | Msa1266820:intron | 35.0% | |
| ACAGTCACCAGTCAAAATAA+TGG | - | chr8_2:71846882-71846901 | None:intergenic | 35.0% | |
| TTAGAGCAACAAAGCTTCAA+AGG | + | chr8_2:71846965-71846984 | Msa1266820:CDS | 35.0% | |
| TCTCTAACTCGTATATCAGA+AGG | - | chr8_2:71847211-71847230 | None:intergenic | 35.0% | |
| GATTTACAGTGATACCATCA+TGG | + | chr8_2:71847297-71847316 | Msa1266820:CDS | 35.0% | |
| AAAATATGCTTCACTGGATC+TGG | - | chr8_2:71847457-71847476 | None:intergenic | 35.0% | |
| AATCGGAAAATATGCTTCAC+TGG | - | chr8_2:71847463-71847482 | None:intergenic | 35.0% | |
| ! | CCGATTTGATGTGAAAGAAA+TGG | + | chr8_2:71847477-71847496 | Msa1266820:CDS | 35.0% |
| ! | ATTGTTGCTTCAGATTGGAA+AGG | + | chr8_2:71847784-71847803 | Msa1266820:CDS | 35.0% |
| ATGTGGAACAATATTAGGAG+GGG | - | chr8_2:71847816-71847835 | None:intergenic | 35.0% | |
| ! | GCTGTTTCAGAGATGTAATT+GGG | + | chr8_2:71848161-71848180 | Msa1266820:three_prime_UTR | 35.0% |
| GAATAGGCAGTGAAATGAGT+TGG | + | chr8_2:71845661-71845680 | Msa1266820:exon | 40.0% | |
| CATACAGAAAGTAGGGAAGT+TGG | - | chr8_2:71845732-71845751 | None:intergenic | 40.0% | |
| CACTTATAGCCATCTTGGTT+GGG | - | chr8_2:71845868-71845887 | None:intergenic | 40.0% | |
| TTCCATCGTAAGACAAAAGG+AGG | - | chr8_2:71845894-71845913 | None:intergenic | 40.0% | |
| ATGAATGATGCCTGCATAAC+GGG | - | chr8_2:71845917-71845936 | None:intergenic | 40.0% | |
| GTTGGAGATACTCACTTGTA+AGG | + | chr8_2:71846036-71846055 | Msa1266820:intron | 40.0% | |
| TCTTATCGCTTCAACACCAT+TGG | + | chr8_2:71846076-71846095 | Msa1266820:intron | 40.0% | |
| !! | ACTTGGTGCGTGTGTATAAA+CGG | + | chr8_2:71846099-71846118 | Msa1266820:intron | 40.0% |
| TGGTATTCGAGCTTACCAAT+CGG | - | chr8_2:71846133-71846152 | None:intergenic | 40.0% | |
| CGAAAACGACTTGTAAGGTA+AGG | + | chr8_2:71846355-71846374 | Msa1266820:intron | 40.0% | |
| TGATACGAATCAGAACCTCA+TGG | - | chr8_2:71846512-71846531 | None:intergenic | 40.0% | |
| !! | TGGTGTCACAAACTTAAGGT+TGG | - | chr8_2:71846609-71846628 | None:intergenic | 40.0% |
| CAGACAATGCCTCACAAAAA+TGG | - | chr8_2:71846629-71846648 | None:intergenic | 40.0% | |
| ATGGATCAAGAGTCAAAGCA+GGG | - | chr8_2:71846788-71846807 | None:intergenic | 40.0% | |
| TATGGATCAAGAGTCAAAGC+AGG | - | chr8_2:71846789-71846808 | None:intergenic | 40.0% | |
| ! | TTTGACTGGTGACTGTTTTC+AGG | + | chr8_2:71846886-71846905 | Msa1266820:intron | 40.0% |
| AGCAACAAAGCTTCAAAGGA+AGG | + | chr8_2:71846969-71846988 | Msa1266820:CDS | 40.0% | |
| AAGCTGAAATTGCGCACAAA+AGG | - | chr8_2:71847067-71847086 | None:intergenic | 40.0% | |
| ! | AGCTTTCAAGTGGCAAACAT+TGG | + | chr8_2:71847082-71847101 | Msa1266820:intron | 40.0% |
| TCACGTCAATATCAATGTGC+AGG | + | chr8_2:71847613-71847632 | Msa1266820:intron | 40.0% | |
| CACGTCAATATCAATGTGCA+GGG | + | chr8_2:71847614-71847633 | Msa1266820:intron | 40.0% | |
| ! | CTTTTGCAGCTAGAAGTTGA+AGG | + | chr8_2:71847641-71847660 | Msa1266820:CDS | 40.0% |
| GTATAGACAAGTCCGAAACA+TGG | + | chr8_2:71847676-71847695 | Msa1266820:CDS | 40.0% | |
| TCACGACTCTCCAAAATATG+TGG | - | chr8_2:71847833-71847852 | None:intergenic | 40.0% | |
| GAAACAAGACAAAGACCATG+TGG | - | chr8_2:71847893-71847912 | None:intergenic | 40.0% | |
| TCATTATATTGCTGGAGCAG+TGG | + | chr8_2:71848110-71848129 | Msa1266820:three_prime_UTR | 40.0% | |
| ! | GGCTGTTTCAGAGATGTAAT+TGG | + | chr8_2:71848160-71848179 | Msa1266820:three_prime_UTR | 40.0% |
| AGGGAAGTTGGAGATGGAAT+CGG | - | chr8_2:71845720-71845739 | None:intergenic | 45.0% | |
| GAAAGTAGGGAAGTTGGAGA+TGG | - | chr8_2:71845726-71845745 | None:intergenic | 45.0% | |
| CCACTTATAGCCATCTTGGT+TGG | - | chr8_2:71845869-71845888 | None:intergenic | 45.0% | |
| CCAACCAAGATGGCTATAAG+TGG | + | chr8_2:71845866-71845885 | Msa1266820:CDS | 45.0% | |
| GGGTTCCATCGTAAGACAAA+AGG | - | chr8_2:71845897-71845916 | None:intergenic | 45.0% | |
| TCACTTGTAAGGTGAGAGAG+AGG | + | chr8_2:71846047-71846066 | Msa1266820:intron | 45.0% | |
| GGTATTCGAGCTTACCAATC+GGG | - | chr8_2:71846132-71846151 | None:intergenic | 45.0% | |
| !! | CGGTTTTGTAAGGACGAGTT+TGG | - | chr8_2:71846176-71846195 | None:intergenic | 45.0% |
| !! | ACTCACAGGACGGTTTTGTA+AGG | - | chr8_2:71846186-71846205 | None:intergenic | 45.0% |
| AAAACCGTCCTGTGAGTTCA+GGG | + | chr8_2:71846189-71846208 | Msa1266820:intron | 45.0% | |
| ACGTTCAATGCTATTGGGCT+TGG | + | chr8_2:71846249-71846268 | Msa1266820:intron | 45.0% | |
| CAAGAGTCAAAGCAGGGATT+TGG | - | chr8_2:71846782-71846801 | None:intergenic | 45.0% | |
| !! | GTTTTCAGGCTGGCAATATC+AGG | + | chr8_2:71846900-71846919 | Msa1266820:intron | 45.0% |
| TCAAAGGAAGGATCTCCAGT+TGG | + | chr8_2:71846981-71847000 | Msa1266820:CDS | 45.0% | |
| GCGCAATTTCAGCTTTCAAG+TGG | + | chr8_2:71847072-71847091 | Msa1266820:intron | 45.0% | |
| ! | AGAGTTCACGCTGCTTTGAA+CGG | + | chr8_2:71847178-71847197 | Msa1266820:CDS | 45.0% |
| ! | TTTTTGCAGAAAACCGAGCG+TGG | - | chr8_2:71847258-71847277 | None:intergenic | 45.0% |
| ! | TAAGCAAAATGGCGCTGGAA+CGG | - | chr8_2:71847325-71847344 | None:intergenic | 45.0% |
| TATGGTAAGCAAAATGGCGC+TGG | - | chr8_2:71847330-71847349 | None:intergenic | 45.0% | |
| ATCTGGTACGCGATCATTGT+GGG | - | chr8_2:71847440-71847459 | None:intergenic | 45.0% | |
| ! | GTCGCATTGTTGCTTCAGAT+TGG | + | chr8_2:71847779-71847798 | Msa1266820:CDS | 45.0% |
| TGCTATTATCTGCCACCACA+TGG | + | chr8_2:71847875-71847894 | Msa1266820:CDS | 45.0% | |
| ACAAGACAAAGACCATGTGG+TGG | - | chr8_2:71847890-71847909 | None:intergenic | 45.0% | |
| ! | GCATGCCAGAACTTTTTGCA+GGG | - | chr8_2:71847958-71847977 | None:intergenic | 45.0% |
| ! | TGCATGCCAGAACTTTTTGC+AGG | - | chr8_2:71847959-71847978 | None:intergenic | 45.0% |
| GAAGTGAAGCCCAACCAAGA+TGG | + | chr8_2:71845856-71845875 | Msa1266820:CDS | 50.0% | |
| ! | CGCCTCCTTTTGTCTTACGA+TGG | + | chr8_2:71845889-71845908 | Msa1266820:CDS | 50.0% |
| TACGATGGAACCCGTTATGC+AGG | + | chr8_2:71845904-71845923 | Msa1266820:CDS | 50.0% | |
| CGCTTCAACACCATTGGACT+TGG | + | chr8_2:71846082-71846101 | Msa1266820:intron | 50.0% | |
| TACACACGCACCAAGTCCAA+TGG | - | chr8_2:71846095-71846114 | None:intergenic | 50.0% | |
| GGTGCGTGTGTATAAACGGT+TGG | + | chr8_2:71846103-71846122 | Msa1266820:intron | 50.0% | |
| GCGTGTGTATAAACGGTTGG+TGG | + | chr8_2:71846106-71846125 | Msa1266820:intron | 50.0% | |
| CAAAACCGTCCTGTGAGTTC+AGG | + | chr8_2:71846188-71846207 | Msa1266820:intron | 50.0% | |
| ! | GGTATCTGAGGCTATCGATC+GGG | - | chr8_2:71846299-71846318 | None:intergenic | 50.0% |
| ! | CGGTATCTGAGGCTATCGAT+CGG | - | chr8_2:71846300-71846319 | None:intergenic | 50.0% |
| !! | ACTGGTGACTGTTTTCAGGC+TGG | + | chr8_2:71846890-71846909 | Msa1266820:intron | 50.0% |
| TACGGCGCATTGTACAGTAG+GGG | - | chr8_2:71846932-71846951 | None:intergenic | 50.0% | |
| CTACGGCGCATTGTACAGTA+GGG | - | chr8_2:71846933-71846952 | None:intergenic | 50.0% | |
| TCTACGGCGCATTGTACAGT+AGG | - | chr8_2:71846934-71846953 | None:intergenic | 50.0% | |
| AGGAAGGATCTCCAGTTGGT+TGG | + | chr8_2:71846985-71847004 | Msa1266820:CDS | 50.0% | |
| TGATGCAGGAGTCCATGCTT+GGG | + | chr8_2:71847020-71847039 | Msa1266820:CDS | 50.0% | |
| CGTGGAATTCAGCTGATGCA+GGG | - | chr8_2:71847240-71847259 | None:intergenic | 50.0% | |
| CATCAGCTGAATTCCACGCT+CGG | + | chr8_2:71847242-71847261 | Msa1266820:CDS | 50.0% | |
| ! | AAGCAAAATGGCGCTGGAAC+GGG | - | chr8_2:71847324-71847343 | None:intergenic | 50.0% |
| GATCTGGTACGCGATCATTG+TGG | - | chr8_2:71847441-71847460 | None:intergenic | 50.0% | |
| GCAGCTAGAAGTTGAAGGCT+CGG | + | chr8_2:71847646-71847665 | Msa1266820:CDS | 50.0% | |
| CAGCTAGAAGTTGAAGGCTC+GGG | + | chr8_2:71847647-71847666 | Msa1266820:CDS | 50.0% | |
| TTTGGAGAGTCGTGATCGCA+AGG | + | chr8_2:71847838-71847857 | Msa1266820:CDS | 50.0% | |
| ! | GAACTTTTTGCAGGGCAACC+TGG | - | chr8_2:71847950-71847969 | None:intergenic | 50.0% |
| GGTTGCCCTGCAAAAAGTTC+TGG | + | chr8_2:71847950-71847969 | Msa1266820:CDS | 50.0% | |
| GGAGCAGTGGAGCCTAAAAT+AGG | + | chr8_2:71848123-71848142 | Msa1266820:three_prime_UTR | 50.0% | |
| AGCAGCAGCAACAACGTCAG+TGG | + | chr8_2:71845689-71845708 | Msa1266820:CDS | 55.0% | |
| GGCGCCACTTATAGCCATCT+TGG | - | chr8_2:71845873-71845892 | None:intergenic | 55.0% | |
| !! | TAAACGGTTGGTGGCCCGAT+TGG | + | chr8_2:71846115-71846134 | Msa1266820:intron | 55.0% |
| GACACCCTGAACTCACAGGA+CGG | - | chr8_2:71846196-71846215 | None:intergenic | 55.0% | |
| GAGTGACACCCTGAACTCAC+AGG | - | chr8_2:71846200-71846219 | None:intergenic | 55.0% | |
| ACGGCGCATTGTACAGTAGG+GGG | - | chr8_2:71846931-71846950 | None:intergenic | 55.0% | |
| ! | TCCAGTTGGTTGGTGCAAGC+AGG | + | chr8_2:71846995-71847014 | Msa1266820:CDS | 55.0% |
| TCCTGCTTGCACCAACCAAC+TGG | - | chr8_2:71846999-71847018 | None:intergenic | 55.0% | |
| CTGATGCAGGAGTCCATGCT+TGG | + | chr8_2:71847019-71847038 | Msa1266820:CDS | 55.0% | |
| GATGCAGGAGTCCATGCTTG+GGG | + | chr8_2:71847021-71847040 | Msa1266820:CDS | 55.0% | |
| ATCTGACCTGACCCCAAGCA+TGG | - | chr8_2:71847035-71847054 | None:intergenic | 55.0% | |
| GCGTGGAATTCAGCTGATGC+AGG | - | chr8_2:71847241-71847260 | None:intergenic | 55.0% | |
| ! | AGTCACTTGTTGCCTCCACC+AGG | + | chr8_2:71847929-71847948 | Msa1266820:CDS | 55.0% |
| ! | CTTTTTGCAGGGCAACCTGG+TGG | - | chr8_2:71847947-71847966 | None:intergenic | 55.0% |
| GGTGCAAGCAGGACTGATGC+AGG | + | chr8_2:71847006-71847025 | Msa1266820:CDS | 60.0% | |
| AGGAGTCCATGCTTGGGGTC+AGG | + | chr8_2:71847026-71847045 | Msa1266820:CDS | 60.0% | |
| TTTGCAGGGCAACCTGGTGG+AGG | - | chr8_2:71847944-71847963 | None:intergenic | 60.0% | |
| GCGCTGGAACGGGTCCATGA+TGG | - | chr8_2:71847314-71847333 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 71845555 | 71848239 | 71845555 | ID=Msa1266820;Name=Msa1266820 |
| chr8_2 | mRNA | 71845555 | 71848239 | 71845555 | ID=Msa1266820-mRNA-1;Parent=Msa1266820;Name=Msa1266820-mRNA-1;_AED=0.22;_eAED=0.22;_QI=120|0.8|0.83|1|1|1|6|227|329 |
| chr8_2 | exon | 71845555 | 71845746 | 71845555 | ID=Msa1266820-mRNA-1:exon:24104;Parent=Msa1266820-mRNA-1 |
| chr8_2 | exon | 71845832 | 71845949 | 71845832 | ID=Msa1266820-mRNA-1:exon:24105;Parent=Msa1266820-mRNA-1 |
| chr8_2 | exon | 71846908 | 71847047 | 71846908 | ID=Msa1266820-mRNA-1:exon:24106;Parent=Msa1266820-mRNA-1 |
| chr8_2 | exon | 71847136 | 71847498 | 71847136 | ID=Msa1266820-mRNA-1:exon:24107;Parent=Msa1266820-mRNA-1 |
| chr8_2 | exon | 71847635 | 71847697 | 71847635 | ID=Msa1266820-mRNA-1:exon:24108;Parent=Msa1266820-mRNA-1 |
| chr8_2 | exon | 71847779 | 71848239 | 71847779 | ID=Msa1266820-mRNA-1:exon:24109;Parent=Msa1266820-mRNA-1 |
| chr8_2 | five_prime_UTR | 71845555 | 71845674 | 71845555 | ID=Msa1266820-mRNA-1:five_prime_utr;Parent=Msa1266820-mRNA-1 |
| chr8_2 | CDS | 71845675 | 71845746 | 71845675 | ID=Msa1266820-mRNA-1:cds;Parent=Msa1266820-mRNA-1 |
| chr8_2 | CDS | 71845832 | 71845949 | 71845832 | ID=Msa1266820-mRNA-1:cds;Parent=Msa1266820-mRNA-1 |
| chr8_2 | CDS | 71846908 | 71847047 | 71846908 | ID=Msa1266820-mRNA-1:cds;Parent=Msa1266820-mRNA-1 |
| chr8_2 | CDS | 71847136 | 71847498 | 71847136 | ID=Msa1266820-mRNA-1:cds;Parent=Msa1266820-mRNA-1 |
| chr8_2 | CDS | 71847635 | 71847697 | 71847635 | ID=Msa1266820-mRNA-1:cds;Parent=Msa1266820-mRNA-1 |
| chr8_2 | CDS | 71847779 | 71848012 | 71847779 | ID=Msa1266820-mRNA-1:cds;Parent=Msa1266820-mRNA-1 |
| chr8_2 | three_prime_UTR | 71848013 | 71848239 | 71848013 | ID=Msa1266820-mRNA-1:three_prime_utr;Parent=Msa1266820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
