Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219490 | XP_003609879.2 | 91.202 | 341 | 10 | 2 | 1 | 340 | 2 | 323 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219490 | sp|Q6MEE7|TRUA1_PARUW | 37.545 | 277 | 146 | 6 | 43 | 317 | 4 | 255 | 6.41e-60 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219490 | A0A396IFU3 | 91.202 | 341 | 10 | 2 | 1 | 340 | 2 | 323 | 0.0 | 636 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0057340 | Msa1219490 | 0.803380 | 3.584644e-49 | -8.615850e-47 |
| Msa0076100 | Msa1219490 | 0.832451 | 9.383442e-56 | -8.615850e-47 |
| Msa0610300 | Msa1219490 | 0.800925 | 1.146276e-48 | -8.615850e-47 |
| Msa0692480 | Msa1219490 | 0.809452 | 1.879142e-50 | -8.615850e-47 |
| Msa0133390 | Msa1219490 | 0.829101 | 6.212829e-55 | -8.615850e-47 |
| Msa0157030 | Msa1219490 | 0.801306 | 9.580264e-49 | -8.615850e-47 |
| Msa0181560 | Msa1219490 | 0.818191 | 2.229135e-52 | -8.615850e-47 |
| Msa0184800 | Msa1219490 | 0.828962 | 6.714463e-55 | -8.615850e-47 |
| Msa0184900 | Msa1219490 | 0.815193 | 1.047868e-51 | -8.615850e-47 |
| Msa0375570 | Msa1219490 | 0.803357 | 3.622810e-49 | -8.615850e-47 |
| Msa0383110 | Msa1219490 | 0.801968 | 7.008523e-49 | -8.615850e-47 |
| Msa1040390 | Msa1219490 | 0.804116 | 2.521235e-49 | -8.615850e-47 |
| Msa1191960 | Msa1219490 | 0.805819 | 1.110164e-49 | -8.615850e-47 |
| Msa1219480 | Msa1219490 | 0.928698 | 1.997655e-92 | -8.615850e-47 |
| Msa1219490 | Msa1266820 | 0.878291 | 3.161669e-69 | -8.615850e-47 |
| Msa1219490 | Msa1375980 | 0.803874 | 2.829811e-49 | -8.615850e-47 |
| Msa1219490 | Msa1409320 | 0.943561 | 9.638724e-103 | -8.615850e-47 |
| Msa1219490 | Msa1415160 | 0.893118 | 8.460181e-75 | -8.615850e-47 |
| Msa0528830 | Msa1219490 | 0.810266 | 1.255358e-50 | -8.615850e-47 |
| Msa0544600 | Msa1219490 | 0.802357 | 5.830325e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219490 | MtrunA17_Chr4g0069331 | 91.202 | 341 | 10 | 2 | 1 | 340 | 2 | 323 | 0.0 | 636 |
| Msa1219490 | MtrunA17_Chr1g0201101 | 28.425 | 292 | 153 | 12 | 23 | 286 | 67 | 330 | 1.48e-16 | 80.1 |
| Msa1219490 | MtrunA17_Chr2g0277101 | 25.854 | 205 | 108 | 6 | 42 | 228 | 43 | 221 | 1.73e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219490 | AT3G06950.1 | 64.110 | 326 | 91 | 4 | 17 | 340 | 21 | 322 | 7.71e-148 | 419 |
| Msa1219490 | AT1G34150.1 | 30.736 | 231 | 116 | 8 | 83 | 287 | 114 | 326 | 8.95e-16 | 78.6 |
Find 86 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATTGTTCCACATATTT+TGG | 0.121197 | 8_1:-82410644 | Msa1219490:CDS |
| GTCTAAAATTTAAATATTAA+TGG | 0.143383 | 8_1:-82410424 | Msa1219490:three_prime_UTR |
| TATTGAGTTTATACATATTA+TGG | 0.228707 | 8_1:+82411131 | None:intergenic |
| ACCGTTTAATTACGACAATT+TGG | 0.242990 | 8_1:-82411323 | Msa1219490:CDS |
| AAAATATGTGGAACAATATT+AGG | 0.254864 | 8_1:+82410646 | None:intergenic |
| GGCTGTTTCAGAGATGTAAT+TGG | 0.268432 | 8_1:-82410304 | Msa1219490:three_prime_UTR |
| ACATATTATGGTAAGCAAAA+TGG | 0.289437 | 8_1:+82411143 | None:intergenic |
| CACTTATAGCCATCTTGGTT+GGG | 0.298483 | 8_1:+82412644 | None:intergenic |
| CTTCATAATCATTATATTGC+TGG | 0.339093 | 8_1:-82410362 | Msa1219490:three_prime_UTR |
| TGTGGATAAAGAAGAAGAAT+AGG | 0.372393 | 8_1:-82412869 | Msa1219490:five_prime_UTR |
| CCGATTTGATGTGAAAGAAA+TGG | 0.378687 | 8_1:-82410999 | Msa1219490:intron |
| GGAGCAGTGGAGCCTAAAAT+AGG | 0.386174 | 8_1:-82410341 | Msa1219490:three_prime_UTR |
| TCCTGCTTGCACCAACCAAC+TGG | 0.392400 | 8_1:+82411480 | None:intergenic |
| TCCAAATTGTCGTAATTAAA+CGG | 0.394286 | 8_1:+82411322 | None:intergenic |
| GATATGATTGCCTGCATAAC+GGG | 0.394519 | 8_1:+82412595 | None:intergenic |
| TGATGCAGGAGTCCATGCTT+GGG | 0.401400 | 8_1:-82411456 | Msa1219490:CDS |
| GTCGCATTGTTGCTTCAGAT+TGG | 0.418270 | 8_1:-82410685 | Msa1219490:CDS |
| AAAATATGCTTCACTGGATC+TGG | 0.422038 | 8_1:+82411022 | None:intergenic |
| CCACTTATAGCCATCTTGGT+TGG | 0.431380 | 8_1:+82412643 | None:intergenic |
| GAAGATTGAATACCATGTTT+CGG | 0.438346 | 8_1:+82410776 | None:intergenic |
| ATCTGGTACGCGATCATTGT+GGG | 0.445378 | 8_1:+82411039 | None:intergenic |
| GCTGTTTCAGAGATGTAATT+GGG | 0.445502 | 8_1:-82410303 | Msa1219490:three_prime_UTR |
| AAGCAAAATGGCGCTGGAAC+GGG | 0.448936 | 8_1:+82411155 | None:intergenic |
| AGGGAAGTTGGAGATGGAAT+CGG | 0.449511 | 8_1:+82412797 | None:intergenic |
| GCGTGGAATTCAGCTGATGC+AGG | 0.451298 | 8_1:+82411238 | None:intergenic |
| CCATTTCTTTCACATCAAAT+CGG | 0.454616 | 8_1:+82410999 | None:intergenic |
| GGCGCCACTTATAGCCATCT+TGG | 0.459785 | 8_1:+82412639 | None:intergenic |
| CTGATGCAGGAGTCCATGCT+TGG | 0.463793 | 8_1:-82411457 | Msa1219490:CDS |
| AATCGGAAAATATGCTTCAC+TGG | 0.470992 | 8_1:+82411016 | None:intergenic |
| AGGAGTCCATGCTTGGGGTC+AGG | 0.479875 | 8_1:-82411450 | Msa1219490:intron |
| TCCAGTTGGTTGGTGCAAGC+AGG | 0.481534 | 8_1:-82411481 | Msa1219490:CDS |
| TACGATGGAACCCGTTATGC+AGG | 0.483247 | 8_1:-82412605 | Msa1219490:CDS |
| AATTTGTTATCGTGTGAGGA+AGG | 0.488875 | 8_1:-82412953 | Msa1219490:five_prime_UTR |
| CATACAGAAAGAAGGGAAGT+TGG | 0.491033 | 8_1:+82412785 | None:intergenic |
| ACAATAGAATTGAATAAGTG+TGG | 0.492623 | 8_1:-82412887 | Msa1219490:five_prime_UTR |
| CAGCTAGAAGTTGAAGGCTC+GGG | 0.495832 | 8_1:-82410817 | Msa1219490:CDS |
| GAATAGGCAGTGAAATGAGT+TGG | 0.498812 | 8_1:-82412853 | Msa1219490:exon |
| CATTCATACATACAGAAAGA+AGG | 0.507840 | 8_1:+82412777 | None:intergenic |
| GAATGAATGAAAAGAGAAGA+AGG | 0.515802 | 8_1:+82412569 | None:intergenic |
| AATAGGCAGTGAAATGAGTT+GGG | 0.520368 | 8_1:-82412852 | Msa1219490:exon |
| TATGGTAAGCAAAATGGCGC+TGG | 0.522963 | 8_1:+82411149 | None:intergenic |
| TTAGAGCAACAAAGCTTCAA+AGG | 0.523117 | 8_1:-82411511 | Msa1219490:CDS |
| GCAGCTAGAAGTTGAAGGCT+CGG | 0.527801 | 8_1:-82410818 | Msa1219490:CDS |
| GGGTTCCATCGTAAGACAAA+AGG | 0.528252 | 8_1:+82412615 | None:intergenic |
| AGTCACTTGTTGCCTCCACC+AGG | 0.529491 | 8_1:-82410535 | Msa1219490:CDS |
| TGAAAATTTGTTATCGTGTG+AGG | 0.530930 | 8_1:-82412957 | Msa1219490:five_prime_UTR |
| GGTGCAAGCAGGACTGATGC+AGG | 0.533920 | 8_1:-82411470 | Msa1219490:CDS |
| GAAAGAAGGGAAGTTGGAGA+TGG | 0.534216 | 8_1:+82412791 | None:intergenic |
| AGCAACAAAGCTTCAAAGGA+AGG | 0.536541 | 8_1:-82411507 | Msa1219490:CDS |
| TGATATGATTGCCTGCATAA+CGG | 0.539705 | 8_1:+82412594 | None:intergenic |
| TAAGCAAAATGGCGCTGGAA+CGG | 0.543419 | 8_1:+82411154 | None:intergenic |
| TGTATTCTAATGATAATACT+AGG | 0.545844 | 8_1:-82410461 | Msa1219490:exon |
| TTTGCAGGGCAACCTGGTGG+AGG | 0.546040 | 8_1:+82410523 | None:intergenic |
| CTACGGCGCATTGTACAGTA+GGG | 0.547422 | 8_1:+82411546 | None:intergenic |
| CATCAGCTGAATTCCACGCT+CGG | 0.550432 | 8_1:-82411234 | Msa1219490:CDS |
| ATTCATACATACAGAAAGAA+GGG | 0.552512 | 8_1:+82412778 | None:intergenic |
| CCAACCAAGATGGCTATAAG+TGG | 0.555642 | 8_1:-82412643 | Msa1219490:CDS |
| TTTGGAGAGTCGTGATCGCA+AGG | 0.562237 | 8_1:-82410626 | Msa1219490:CDS |
| TCACGACTCTCCAAAATATG+TGG | 0.564125 | 8_1:+82410634 | None:intergenic |
| ATTTGTTATCGTGTGAGGAA+GGG | 0.565961 | 8_1:-82412952 | Msa1219490:five_prime_UTR |
| ATCTGACCTGACCCCAAGCA+TGG | 0.568094 | 8_1:+82411444 | None:intergenic |
| TATGTGGAACAATATTAGGA+GGG | 0.569490 | 8_1:+82410650 | None:intergenic |
| TCATTATATTGCTGGAGCAG+TGG | 0.572054 | 8_1:-82410354 | Msa1219490:three_prime_UTR |
| ATATGTGGAACAATATTAGG+AGG | 0.574988 | 8_1:+82410649 | None:intergenic |
| TTCCATCGTAAGACAAAAGG+AGG | 0.577863 | 8_1:+82412618 | None:intergenic |
| AGAGTTCACGCTGCTTTGAA+CGG | 0.578649 | 8_1:-82411298 | Msa1219490:CDS |
| CGTGGAATTCAGCTGATGCA+GGG | 0.588035 | 8_1:+82411239 | None:intergenic |
| TCTCTAACTCGTATATCAGA+AGG | 0.591774 | 8_1:+82411268 | None:intergenic |
| GATCTGGTACGCGATCATTG+TGG | 0.593882 | 8_1:+82411038 | None:intergenic |
| AGGAAGGATCTCCAGTTGGT+TGG | 0.596611 | 8_1:-82411491 | Msa1219490:CDS |
| GCGCTGGAACGGGTCCATGA+TGG | 0.598181 | 8_1:+82411165 | None:intergenic |
| TGCTATTATCTGCCACCACA+TGG | 0.601083 | 8_1:-82410589 | Msa1219490:CDS |
| GAATTCTTCAAGTGATGTTG+TGG | 0.605338 | 8_1:-82412675 | Msa1219490:CDS |
| GAAGTGAAGCCCAACCAAGA+TGG | 0.606632 | 8_1:-82412653 | Msa1219490:CDS |
| ATTGTTGCTTCAGATTGGAA+AGG | 0.610327 | 8_1:-82410680 | Msa1219490:CDS |
| GATTTACAGTGATACCATCA+TGG | 0.611998 | 8_1:-82411179 | Msa1219490:CDS |
| TCATACCATAAGAAAATGCA+AGG | 0.613094 | 8_1:-82410485 | Msa1219490:CDS |
| TCAAAGGAAGGATCTCCAGT+TGG | 0.617658 | 8_1:-82411495 | Msa1219490:CDS |
| GATGCAGGAGTCCATGCTTG+GGG | 0.645475 | 8_1:-82411455 | Msa1219490:CDS |
| TACGGCGCATTGTACAGTAG+GGG | 0.655013 | 8_1:+82411547 | None:intergenic |
| ATGTGGAACAATATTAGGAG+GGG | 0.656496 | 8_1:+82410651 | None:intergenic |
| AGCAGCAGCAACAACATCAG+TGG | 0.661577 | 8_1:-82412825 | Msa1219490:CDS |
| GTATAGACAAGTCCGAAACA+TGG | 0.664436 | 8_1:-82410788 | Msa1219490:intron |
| ACGGCGCATTGTACAGTAGG+GGG | 0.692690 | 8_1:+82411548 | None:intergenic |
| GAAACAAGACAAAGACCATG+TGG | 0.703286 | 8_1:+82410574 | None:intergenic |
| ACAAGACAAAGACCATGTGG+TGG | 0.708267 | 8_1:+82410577 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATAAAAAACTTGA+TGG | + | chr8_1:82410299-82410318 | None:intergenic | 10.0% |
| !!! | GTCTAAAATTTAAATATTAA+TGG | - | chr8_1:82412785-82412804 | Msa1219490:intron | 10.0% |
| !! | AACTAAAATAAGTATAGTAT+AGG | - | chr8_1:82410733-82410752 | Msa1219490:intron | 15.0% |
| !! | CCAAATATAAAAATCTAATA+TGG | + | chr8_1:82410881-82410900 | None:intergenic | 15.0% |
| !!! | CCATATTAGATTTTTATATT+TGG | - | chr8_1:82410878-82410897 | Msa1219490:intron | 15.0% |
| !! | CCTAATATAAAAATCTAATA+CGG | + | chr8_1:82411053-82411072 | None:intergenic | 15.0% |
| !! | TATTGAGTTTATACATATTA+TGG | + | chr8_1:82412081-82412100 | None:intergenic | 15.0% |
| !!! | CAACAATAACTTTTTTAATT+TGG | + | chr8_1:82412463-82412482 | None:intergenic | 15.0% |
| !!! | CCGTATTAGATTTTTATATT+AGG | - | chr8_1:82411050-82411069 | Msa1219490:CDS | 20.0% |
| !!! | TGTTTTTATTCATTAAATGC+TGG | + | chr8_1:82411562-82411581 | None:intergenic | 20.0% |
| !!! | TCTAATTAAAGCTTTTTCTA+CGG | + | chr8_1:82411683-82411702 | None:intergenic | 20.0% |
| !! | TTTCAAAAAATAAACCAAGA+AGG | + | chr8_1:82412316-82412335 | None:intergenic | 20.0% |
| !! | AAAATATGTGGAACAATATT+AGG | + | chr8_1:82412566-82412585 | None:intergenic | 20.0% |
| !!! | TAATATTGTTCCACATATTT+TGG | - | chr8_1:82412565-82412584 | Msa1219490:CDS | 20.0% |
| !! | TGTATTCTAATGATAATACT+AGG | - | chr8_1:82412748-82412767 | Msa1219490:intron | 20.0% |
| ! | ACAATAGAATTGAATAAGTG+TGG | - | chr8_1:82410322-82410341 | Msa1219490:three_prime_UTR | 25.0% |
| ! | ATTCATACATACAGAAAGAA+GGG | + | chr8_1:82410434-82410453 | None:intergenic | 25.0% |
| ! | AAGTTTCGGATAAAAAAGAT+AGG | + | chr8_1:82411146-82411165 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTATCCGAAACTT+AGG | - | chr8_1:82411146-82411165 | Msa1219490:CDS | 25.0% |
| ! | TGCAATATGCAAGTAATATT+GGG | + | chr8_1:82411178-82411197 | None:intergenic | 25.0% |
| ! | ATGCAATATGCAAGTAATAT+TGG | + | chr8_1:82411179-82411198 | None:intergenic | 25.0% |
| !!! | ACTTGGATTTGGTATTTTTA+AGG | + | chr8_1:82411418-82411437 | None:intergenic | 25.0% |
| ! | TAAAAATACCAAATCCAAGT+TGG | - | chr8_1:82411418-82411437 | Msa1219490:intron | 25.0% |
| !!! | TTTTTCTCCATTATTTTGAC+TGG | - | chr8_1:82411605-82411624 | Msa1219490:intron | 25.0% |
| ! | TTATAACTTATTGTGACTGT+AGG | - | chr8_1:82411847-82411866 | Msa1219490:intron | 25.0% |
| ! | TCCAAATTGTCGTAATTAAA+CGG | + | chr8_1:82411890-82411909 | None:intergenic | 25.0% |
| ! | ACATATTATGGTAAGCAAAA+TGG | + | chr8_1:82412069-82412088 | None:intergenic | 25.0% |
| !! | AAGCTGCAAGATATTTTATT+GGG | - | chr8_1:82412116-82412135 | Msa1219490:intron | 25.0% |
| !! | ATATATCTGTTTGCATTTTC+AGG | - | chr8_1:82412502-82412521 | Msa1219490:intron | 25.0% |
| ! | CTTCATAATCATTATATTGC+TGG | - | chr8_1:82412847-82412866 | Msa1219490:exon | 25.0% |
| !! | AAAAGCTAAACTCCTATTTT+AGG | + | chr8_1:82412883-82412902 | None:intergenic | 25.0% |
| !!! | AAAATAGGAGTTTAGCTTTT+AGG | - | chr8_1:82412883-82412902 | Msa1219490:five_prime_UTR | 25.0% |
| !!! | AAATAGGAGTTTAGCTTTTA+GGG | - | chr8_1:82412884-82412903 | Msa1219490:five_prime_UTR | 25.0% |
| TGTGGATAAAGAAGAAGAAT+AGG | - | chr8_1:82410340-82410359 | Msa1219490:three_prime_UTR | 30.0% | |
| CATTCATACATACAGAAAGA+AGG | + | chr8_1:82410435-82410454 | None:intergenic | 30.0% | |
| GAAGAGAAAGAGAAAAAAGA+GGG | + | chr8_1:82410468-82410487 | None:intergenic | 30.0% | |
| AGAAGAGAAAGAGAAAAAAG+AGG | + | chr8_1:82410469-82410488 | None:intergenic | 30.0% | |
| GAATGAATGAAAAGAGAAGA+AGG | + | chr8_1:82410643-82410662 | None:intergenic | 30.0% | |
| ATAGTATAGGCTCTTAATGT+TGG | - | chr8_1:82410746-82410765 | Msa1219490:intron | 30.0% | |
| CACTCTTTATGAACTCTTAT+TGG | - | chr8_1:82410944-82410963 | Msa1219490:intron | 30.0% | |
| GGTGCATGTATATAAATAGT+GGG | - | chr8_1:82411003-82411022 | Msa1219490:CDS | 30.0% | |
| AAAATCTAATACGGTATCTG+AGG | + | chr8_1:82411044-82411063 | None:intergenic | 30.0% | |
| TTGGGAAAAAACCTAAGTTT+CGG | + | chr8_1:82411160-82411179 | None:intergenic | 30.0% | |
| GCATTTCTCTCAAAGTAAAT+AGG | + | chr8_1:82411277-82411296 | None:intergenic | 30.0% | |
| !! | AAAATGGTGTCACAAACTTA+AGG | + | chr8_1:82411346-82411365 | None:intergenic | 30.0% |
| !! | ATTTTGAGCTTTATCCAACT+TGG | + | chr8_1:82411435-82411454 | None:intergenic | 30.0% |
| !! | GGGATTTGGTATTCTTTTTA+TGG | + | chr8_1:82411501-82411520 | None:intergenic | 30.0% |
| GAAAACTACACCTTTCTATA+TGG | + | chr8_1:82411540-82411559 | None:intergenic | 30.0% | |
| ACCGTTTAATTACGACAATT+TGG | - | chr8_1:82411886-82411905 | Msa1219490:intron | 30.0% | |
| ! | GAAGCTGCAAGATATTTTAT+TGG | - | chr8_1:82412115-82412134 | Msa1219490:intron | 30.0% |
| CCATTTCTTTCACATCAAAT+CGG | + | chr8_1:82412213-82412232 | None:intergenic | 30.0% | |
| TAATAATGTTCACAGCAGTA+CGG | + | chr8_1:82412263-82412282 | None:intergenic | 30.0% | |
| TTACCATGTTTATACCTTCT+TGG | - | chr8_1:82412299-82412318 | Msa1219490:intron | 30.0% | |
| ! | AAACCAAGAAGGTATAAACA+TGG | + | chr8_1:82412305-82412324 | None:intergenic | 30.0% |
| GAAGATTGAATACCATGTTT+CGG | + | chr8_1:82412436-82412455 | None:intergenic | 30.0% | |
| TATGTGGAACAATATTAGGA+GGG | + | chr8_1:82412562-82412581 | None:intergenic | 30.0% | |
| ATATGTGGAACAATATTAGG+AGG | + | chr8_1:82412563-82412582 | None:intergenic | 30.0% | |
| TCATACCATAAGAAAATGCA+AGG | - | chr8_1:82412724-82412743 | Msa1219490:intron | 30.0% | |
| ! | TACAACCTTGCATTTTCTTA+TGG | + | chr8_1:82412732-82412751 | None:intergenic | 30.0% |
| !! | AATTTGTTATCGTGTGAGGA+AGG | - | chr8_1:82410256-82410275 | Msa1219490:three_prime_UTR | 35.0% |
| !! | ATTTGTTATCGTGTGAGGAA+GGG | - | chr8_1:82410257-82410276 | Msa1219490:three_prime_UTR | 35.0% |
| AATAGGCAGTGAAATGAGTT+GGG | - | chr8_1:82410357-82410376 | Msa1219490:three_prime_UTR | 35.0% | |
| GAATTCTTCAAGTGATGTTG+TGG | - | chr8_1:82410534-82410553 | Msa1219490:CDS | 35.0% | |
| TGATATGATTGCCTGCATAA+CGG | + | chr8_1:82410618-82410637 | None:intergenic | 35.0% | |
| AATCTCACGTTCAATGCTAT+TGG | - | chr8_1:82410972-82410991 | Msa1219490:intron | 35.0% | |
| ATCTCACGTTCAATGCTATT+GGG | - | chr8_1:82410973-82410992 | Msa1219490:intron | 35.0% | |
| GGGTGCATGTATATAAATAG+TGG | - | chr8_1:82411002-82411021 | Msa1219490:CDS | 35.0% | |
| CTTTACGAAAACGACTTGTA+AGG | - | chr8_1:82411083-82411102 | Msa1219490:CDS | 35.0% | |
| GAAAACGACTTGTAAGGTAA+GGG | - | chr8_1:82411089-82411108 | Msa1219490:CDS | 35.0% | |
| AAAACGACTTGTAAGGTAAG+GGG | - | chr8_1:82411090-82411109 | Msa1219490:CDS | 35.0% | |
| TCTCAAACATTGTAACCATG+AGG | - | chr8_1:82411227-82411246 | Msa1219490:CDS | 35.0% | |
| !! | TTTGTGACACCATTTTTGTG+AGG | - | chr8_1:82411350-82411369 | Msa1219490:intron | 35.0% |
| ! | AGCTTTATCCAACTTGGATT+TGG | + | chr8_1:82411429-82411448 | None:intergenic | 35.0% |
| ! | TGAATGAAGTTTTCAGCTTG+AGG | - | chr8_1:82411465-82411484 | Msa1219490:CDS | 35.0% |
| GACTCTTGATCCATATAGAA+AGG | - | chr8_1:82411527-82411546 | Msa1219490:CDS | 35.0% | |
| !!! | TTCTCCATTATTTTGACTGG+TGG | - | chr8_1:82411608-82411627 | Msa1219490:intron | 35.0% |
| TTAGAGCAACAAAGCTTCAA+AGG | - | chr8_1:82411698-82411717 | Msa1219490:intron | 35.0% | |
| TCTCTAACTCGTATATCAGA+AGG | + | chr8_1:82411944-82411963 | None:intergenic | 35.0% | |
| GATTTACAGTGATACCATCA+TGG | - | chr8_1:82412030-82412049 | Msa1219490:intron | 35.0% | |
| AAAATATGCTTCACTGGATC+TGG | + | chr8_1:82412190-82412209 | None:intergenic | 35.0% | |
| AATCGGAAAATATGCTTCAC+TGG | + | chr8_1:82412196-82412215 | None:intergenic | 35.0% | |
| ! | CCGATTTGATGTGAAAGAAA+TGG | - | chr8_1:82412210-82412229 | Msa1219490:intron | 35.0% |
| ! | ATTGTTGCTTCAGATTGGAA+AGG | - | chr8_1:82412529-82412548 | Msa1219490:intron | 35.0% |
| ATGTGGAACAATATTAGGAG+GGG | + | chr8_1:82412561-82412580 | None:intergenic | 35.0% | |
| ! | GCTGTTTCAGAGATGTAATT+GGG | - | chr8_1:82412906-82412925 | Msa1219490:five_prime_UTR | 35.0% |
| GAATAGGCAGTGAAATGAGT+TGG | - | chr8_1:82410356-82410375 | Msa1219490:three_prime_UTR | 40.0% | |
| CATACAGAAAGAAGGGAAGT+TGG | + | chr8_1:82410427-82410446 | None:intergenic | 40.0% | |
| CACTTATAGCCATCTTGGTT+GGG | + | chr8_1:82410568-82410587 | None:intergenic | 40.0% | |
| TTCCATCGTAAGACAAAAGG+AGG | + | chr8_1:82410594-82410613 | None:intergenic | 40.0% | |
| GATATGATTGCCTGCATAAC+GGG | + | chr8_1:82410617-82410636 | None:intergenic | 40.0% | |
| GTTGGAGATACTCACTTGTA+AGG | - | chr8_1:82410764-82410783 | Msa1219490:intron | 40.0% | |
| TCTTATCGCTTCAACACCAT+TGG | - | chr8_1:82410804-82410823 | Msa1219490:CDS | 40.0% | |
| !! | ACTTGGTGCGTGTGTATAAA+CGG | - | chr8_1:82410827-82410846 | Msa1219490:CDS | 40.0% |
| TGGTATTCGAGCTTACCAAT+CGG | + | chr8_1:82410861-82410880 | None:intergenic | 40.0% | |
| !! | AGTCACAAGACGGTTTTGTA+AGG | + | chr8_1:82410914-82410933 | None:intergenic | 40.0% |
| AAAACCGTCTTGTGACTTGA+GGG | - | chr8_1:82410917-82410936 | Msa1219490:intron | 40.0% | |
| CGAAAACGACTTGTAAGGTA+AGG | - | chr8_1:82411088-82411107 | Msa1219490:CDS | 40.0% | |
| TGATACGAATCAGAACCTCA+TGG | + | chr8_1:82411245-82411264 | None:intergenic | 40.0% | |
| !! | TGGTGTCACAAACTTAAGGT+TGG | + | chr8_1:82411342-82411361 | None:intergenic | 40.0% |
| CAGACAATGCCTCACAAAAA+TGG | + | chr8_1:82411362-82411381 | None:intergenic | 40.0% | |
| ATGGATCAAGAGTCAAAGCA+GGG | + | chr8_1:82411521-82411540 | None:intergenic | 40.0% | |
| TATGGATCAAGAGTCAAAGC+AGG | + | chr8_1:82411522-82411541 | None:intergenic | 40.0% | |
| ACAGCCACCAGTCAAAATAA+TGG | + | chr8_1:82411615-82411634 | None:intergenic | 40.0% | |
| AGCAACAAAGCTTCAAAGGA+AGG | - | chr8_1:82411702-82411721 | Msa1219490:intron | 40.0% | |
| AAGCTGAAATTGCGCACAAA+AGG | + | chr8_1:82411800-82411819 | None:intergenic | 40.0% | |
| ! | AGCTTTCAAGTGGCAAACAT+TGG | - | chr8_1:82411815-82411834 | Msa1219490:intron | 40.0% |
| TCACGTCAATATCAATGTGC+AGG | - | chr8_1:82412358-82412377 | Msa1219490:intron | 40.0% | |
| CACGTCAATATCAATGTGCA+GGG | - | chr8_1:82412359-82412378 | Msa1219490:intron | 40.0% | |
| ! | CTTTTGCAGCTAGAAGTTGA+AGG | - | chr8_1:82412386-82412405 | Msa1219490:intron | 40.0% |
| GTATAGACAAGTCCGAAACA+TGG | - | chr8_1:82412421-82412440 | Msa1219490:intron | 40.0% | |
| TCACGACTCTCCAAAATATG+TGG | + | chr8_1:82412578-82412597 | None:intergenic | 40.0% | |
| GAAACAAGACAAAGACCATG+TGG | + | chr8_1:82412638-82412657 | None:intergenic | 40.0% | |
| TCATTATATTGCTGGAGCAG+TGG | - | chr8_1:82412855-82412874 | Msa1219490:exon | 40.0% | |
| ! | GGCTGTTTCAGAGATGTAAT+TGG | - | chr8_1:82412905-82412924 | Msa1219490:five_prime_UTR | 40.0% |
| AGGGAAGTTGGAGATGGAAT+CGG | + | chr8_1:82410415-82410434 | None:intergenic | 45.0% | |
| GAAAGAAGGGAAGTTGGAGA+TGG | + | chr8_1:82410421-82410440 | None:intergenic | 45.0% | |
| CCACTTATAGCCATCTTGGT+TGG | + | chr8_1:82410569-82410588 | None:intergenic | 45.0% | |
| CCAACCAAGATGGCTATAAG+TGG | - | chr8_1:82410566-82410585 | Msa1219490:CDS | 45.0% | |
| GGGTTCCATCGTAAGACAAA+AGG | + | chr8_1:82410597-82410616 | None:intergenic | 45.0% | |
| TCACTTGTAAGGTGAGAGAG+AGG | - | chr8_1:82410775-82410794 | Msa1219490:intron | 45.0% | |
| GGTATTCGAGCTTACCAATC+GGG | + | chr8_1:82410860-82410879 | None:intergenic | 45.0% | |
| !! | CGGTTTTGTAAGGACGAGTT+TGG | + | chr8_1:82410904-82410923 | None:intergenic | 45.0% |
| CAAAACCGTCTTGTGACTTG+AGG | - | chr8_1:82410916-82410935 | Msa1219490:intron | 45.0% | |
| AAACCGTCTTGTGACTTGAG+GGG | - | chr8_1:82410918-82410937 | Msa1219490:intron | 45.0% | |
| ACGTTCAATGCTATTGGGCT+TGG | - | chr8_1:82410978-82410997 | Msa1219490:intron | 45.0% | |
| TTCAATGCTATTGGGCTTGG+TGG | - | chr8_1:82410981-82411000 | Msa1219490:intron | 45.0% | |
| ! | TCAATGCTATTGGGCTTGGT+GGG | - | chr8_1:82410982-82411001 | Msa1219490:intron | 45.0% |
| CAAGAGTCAAAGCAGGGATT+TGG | + | chr8_1:82411515-82411534 | None:intergenic | 45.0% | |
| !! | TTTGACTGGTGGCTGTTTTC+AGG | - | chr8_1:82411619-82411638 | Msa1219490:intron | 45.0% |
| !! | GTTTTCAGGCTGGCAATATC+AGG | - | chr8_1:82411633-82411652 | Msa1219490:intron | 45.0% |
| TCAAAGGAAGGATCTCCAGT+TGG | - | chr8_1:82411714-82411733 | Msa1219490:intron | 45.0% | |
| GCGCAATTTCAGCTTTCAAG+TGG | - | chr8_1:82411805-82411824 | Msa1219490:intron | 45.0% | |
| ! | AGAGTTCACGCTGCTTTGAA+CGG | - | chr8_1:82411911-82411930 | Msa1219490:intron | 45.0% |
| ! | TTTTTGCAGAAAACCGAGCG+TGG | + | chr8_1:82411991-82412010 | None:intergenic | 45.0% |
| ! | TAAGCAAAATGGCGCTGGAA+CGG | + | chr8_1:82412058-82412077 | None:intergenic | 45.0% |
| TATGGTAAGCAAAATGGCGC+TGG | + | chr8_1:82412063-82412082 | None:intergenic | 45.0% | |
| ATCTGGTACGCGATCATTGT+GGG | + | chr8_1:82412173-82412192 | None:intergenic | 45.0% | |
| ! | GTCGCATTGTTGCTTCAGAT+TGG | - | chr8_1:82412524-82412543 | Msa1219490:intron | 45.0% |
| TGCTATTATCTGCCACCACA+TGG | - | chr8_1:82412620-82412639 | Msa1219490:CDS | 45.0% | |
| ACAAGACAAAGACCATGTGG+TGG | + | chr8_1:82412635-82412654 | None:intergenic | 45.0% | |
| ! | GCATGCCAGAACTTTTTGCA+GGG | + | chr8_1:82412703-82412722 | None:intergenic | 45.0% |
| ! | TGCATGCCAGAACTTTTTGC+AGG | + | chr8_1:82412704-82412723 | None:intergenic | 45.0% |
| AGCAGCAGCAACAACATCAG+TGG | - | chr8_1:82410384-82410403 | Msa1219490:three_prime_UTR | 50.0% | |
| GAAGTGAAGCCCAACCAAGA+TGG | - | chr8_1:82410556-82410575 | Msa1219490:CDS | 50.0% | |
| ! | CGCCTCCTTTTGTCTTACGA+TGG | - | chr8_1:82410589-82410608 | Msa1219490:CDS | 50.0% |
| TACGATGGAACCCGTTATGC+AGG | - | chr8_1:82410604-82410623 | Msa1219490:CDS | 50.0% | |
| CGCTTCAACACCATTGGACT+TGG | - | chr8_1:82410810-82410829 | Msa1219490:CDS | 50.0% | |
| TACACACGCACCAAGTCCAA+TGG | + | chr8_1:82410823-82410842 | None:intergenic | 50.0% | |
| GGTGCGTGTGTATAAACGGT+TGG | - | chr8_1:82410831-82410850 | Msa1219490:CDS | 50.0% | |
| GCGTGTGTATAAACGGTTGG+TGG | - | chr8_1:82410834-82410853 | Msa1219490:intron | 50.0% | |
| ACACCCCTCAAGTCACAAGA+CGG | + | chr8_1:82410924-82410943 | None:intergenic | 50.0% | |
| ! | GGTATCTGAGGCTATCGATC+GGG | + | chr8_1:82411032-82411051 | None:intergenic | 50.0% |
| ! | CGGTATCTGAGGCTATCGAT+CGG | + | chr8_1:82411033-82411052 | None:intergenic | 50.0% |
| TACGGCGCATTGTACAGTAG+GGG | + | chr8_1:82411665-82411684 | None:intergenic | 50.0% | |
| CTACGGCGCATTGTACAGTA+GGG | + | chr8_1:82411666-82411685 | None:intergenic | 50.0% | |
| TCTACGGCGCATTGTACAGT+AGG | + | chr8_1:82411667-82411686 | None:intergenic | 50.0% | |
| AGGAAGGATCTCCAGTTGGT+TGG | - | chr8_1:82411718-82411737 | Msa1219490:intron | 50.0% | |
| TGATGCAGGAGTCCATGCTT+GGG | - | chr8_1:82411753-82411772 | Msa1219490:intron | 50.0% | |
| CGTGGAATTCAGCTGATGCA+GGG | + | chr8_1:82411973-82411992 | None:intergenic | 50.0% | |
| CATCAGCTGAATTCCACGCT+CGG | - | chr8_1:82411975-82411994 | Msa1219490:intron | 50.0% | |
| ! | AAGCAAAATGGCGCTGGAAC+GGG | + | chr8_1:82412057-82412076 | None:intergenic | 50.0% |
| GATCTGGTACGCGATCATTG+TGG | + | chr8_1:82412174-82412193 | None:intergenic | 50.0% | |
| GCAGCTAGAAGTTGAAGGCT+CGG | - | chr8_1:82412391-82412410 | Msa1219490:intron | 50.0% | |
| CAGCTAGAAGTTGAAGGCTC+GGG | - | chr8_1:82412392-82412411 | Msa1219490:intron | 50.0% | |
| TTTGGAGAGTCGTGATCGCA+AGG | - | chr8_1:82412583-82412602 | Msa1219490:CDS | 50.0% | |
| ! | GAACTTTTTGCAGGGCAACC+TGG | + | chr8_1:82412695-82412714 | None:intergenic | 50.0% |
| GGTTGCCCTGCAAAAAGTTC+TGG | - | chr8_1:82412695-82412714 | Msa1219490:intron | 50.0% | |
| GGAGCAGTGGAGCCTAAAAT+AGG | - | chr8_1:82412868-82412887 | Msa1219490:five_prime_UTR | 50.0% | |
| GGCGCCACTTATAGCCATCT+TGG | + | chr8_1:82410573-82410592 | None:intergenic | 55.0% | |
| !! | TAAACGGTTGGTGGCCCGAT+TGG | - | chr8_1:82410843-82410862 | Msa1219490:intron | 55.0% |
| !! | ACTGGTGGCTGTTTTCAGGC+TGG | - | chr8_1:82411623-82411642 | Msa1219490:intron | 55.0% |
| ACGGCGCATTGTACAGTAGG+GGG | + | chr8_1:82411664-82411683 | None:intergenic | 55.0% | |
| ! | TCCAGTTGGTTGGTGCAAGC+AGG | - | chr8_1:82411728-82411747 | Msa1219490:intron | 55.0% |
| TCCTGCTTGCACCAACCAAC+TGG | + | chr8_1:82411732-82411751 | None:intergenic | 55.0% | |
| CTGATGCAGGAGTCCATGCT+TGG | - | chr8_1:82411752-82411771 | Msa1219490:intron | 55.0% | |
| GATGCAGGAGTCCATGCTTG+GGG | - | chr8_1:82411754-82411773 | Msa1219490:intron | 55.0% | |
| ATCTGACCTGACCCCAAGCA+TGG | + | chr8_1:82411768-82411787 | None:intergenic | 55.0% | |
| GCGTGGAATTCAGCTGATGC+AGG | + | chr8_1:82411974-82411993 | None:intergenic | 55.0% | |
| ! | AGTCACTTGTTGCCTCCACC+AGG | - | chr8_1:82412674-82412693 | Msa1219490:CDS | 55.0% |
| ! | CTTTTTGCAGGGCAACCTGG+TGG | + | chr8_1:82412692-82412711 | None:intergenic | 55.0% |
| GGTGCAAGCAGGACTGATGC+AGG | - | chr8_1:82411739-82411758 | Msa1219490:intron | 60.0% | |
| AGGAGTCCATGCTTGGGGTC+AGG | - | chr8_1:82411759-82411778 | Msa1219490:intron | 60.0% | |
| TTTGCAGGGCAACCTGGTGG+AGG | + | chr8_1:82412689-82412708 | None:intergenic | 60.0% | |
| GCGCTGGAACGGGTCCATGA+TGG | + | chr8_1:82412047-82412066 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 82410253 | 82412978 | 82410253 | ID=Msa1219490;Name=Msa1219490 |
| chr8_1 | mRNA | 82410253 | 82412978 | 82410253 | ID=Msa1219490-mRNA-1;Parent=Msa1219490;Name=Msa1219490-mRNA-1;_AED=0.34;_eAED=0.34;_QI=117|0.8|0.83|1|1|1|6|221|340 |
| chr8_1 | exon | 82410253 | 82410707 | 82410253 | ID=Msa1219490-mRNA-1:exon:29361;Parent=Msa1219490-mRNA-1 |
| chr8_1 | exon | 82410789 | 82410851 | 82410789 | ID=Msa1219490-mRNA-1:exon:29360;Parent=Msa1219490-mRNA-1 |
| chr8_1 | exon | 82411000 | 82411362 | 82411000 | ID=Msa1219490-mRNA-1:exon:29359;Parent=Msa1219490-mRNA-1 |
| chr8_1 | exon | 82411451 | 82411590 | 82411451 | ID=Msa1219490-mRNA-1:exon:29358;Parent=Msa1219490-mRNA-1 |
| chr8_1 | exon | 82412549 | 82412699 | 82412549 | ID=Msa1219490-mRNA-1:exon:29357;Parent=Msa1219490-mRNA-1 |
| chr8_1 | exon | 82412790 | 82412978 | 82412790 | ID=Msa1219490-mRNA-1:exon:29356;Parent=Msa1219490-mRNA-1 |
| chr8_1 | five_prime_UTR | 82412862 | 82412978 | 82412862 | ID=Msa1219490-mRNA-1:five_prime_utr;Parent=Msa1219490-mRNA-1 |
| chr8_1 | CDS | 82412790 | 82412861 | 82412790 | ID=Msa1219490-mRNA-1:cds;Parent=Msa1219490-mRNA-1 |
| chr8_1 | CDS | 82412549 | 82412699 | 82412549 | ID=Msa1219490-mRNA-1:cds;Parent=Msa1219490-mRNA-1 |
| chr8_1 | CDS | 82411451 | 82411590 | 82411451 | ID=Msa1219490-mRNA-1:cds;Parent=Msa1219490-mRNA-1 |
| chr8_1 | CDS | 82411000 | 82411362 | 82411000 | ID=Msa1219490-mRNA-1:cds;Parent=Msa1219490-mRNA-1 |
| chr8_1 | CDS | 82410789 | 82410851 | 82410789 | ID=Msa1219490-mRNA-1:cds;Parent=Msa1219490-mRNA-1 |
| chr8_1 | CDS | 82410474 | 82410707 | 82410474 | ID=Msa1219490-mRNA-1:cds;Parent=Msa1219490-mRNA-1 |
| chr8_1 | three_prime_UTR | 82410253 | 82410473 | 82410253 | ID=Msa1219490-mRNA-1:three_prime_utr;Parent=Msa1219490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
