Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219480 | sp|Q6MEE7|TRUA1_PARUW | 39.098 | 266 | 146 | 6 | 43 | 306 | 4 | 255 | 8.84e-62 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219480 | A0A396IFU3 | 94.242 | 330 | 10 | 2 | 1 | 329 | 2 | 323 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076100 | Msa1219480 | 0.808812 | 2.576818e-50 | -8.615850e-47 |
| Msa0133390 | Msa1219480 | 0.806687 | 7.287670e-50 | -8.615850e-47 |
| Msa0184800 | Msa1219480 | 0.805851 | 1.093367e-49 | -8.615850e-47 |
| Msa1219480 | Msa1219490 | 0.928698 | 1.997655e-92 | -8.615850e-47 |
| Msa1219480 | Msa1266820 | 0.867664 | 1.158532e-65 | -8.615850e-47 |
| Msa1219480 | Msa1409320 | 0.911576 | 5.200716e-83 | -8.615850e-47 |
| Msa1219480 | Msa1415160 | 0.875862 | 2.205351e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219480 | MtrunA17_Chr4g0069331 | 94.242 | 330 | 10 | 2 | 1 | 329 | 2 | 323 | 0.0 | 640 |
| Msa1219480 | MtrunA17_Chr1g0201101 | 28.070 | 285 | 152 | 10 | 23 | 275 | 67 | 330 | 1.70e-16 | 80.1 |
| Msa1219480 | MtrunA17_Chr2g0277101 | 27.320 | 194 | 108 | 6 | 42 | 217 | 43 | 221 | 6.22e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219480 | AT3G06950.1 | 66.349 | 315 | 91 | 4 | 17 | 329 | 21 | 322 | 1.10e-149 | 424 |
| Msa1219480 | AT1G34150.1 | 28.682 | 258 | 133 | 8 | 45 | 276 | 94 | 326 | 8.57e-16 | 78.2 |
| Msa1219480 | AT1G09800.1 | 23.582 | 335 | 161 | 11 | 42 | 301 | 56 | 370 | 1.35e-11 | 65.5 |
| Msa1219480 | AT1G09800.2 | 23.582 | 335 | 161 | 11 | 42 | 301 | 56 | 370 | 1.35e-11 | 65.5 |
Find 86 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATTGTTCCACATATTT+TGG | 0.121197 | 8_1:-82406460 | Msa1219480:CDS |
| GTGATCATTGAACTAAATTT+TGG | 0.137694 | 8_1:+82406063 | None:intergenic |
| GTCTAAAATTTAAATATTAA+TGG | 0.143383 | 8_1:-82406240 | Msa1219480:three_prime_UTR |
| TATTGAGTTTATACATATTA+TGG | 0.228707 | 8_1:+82406947 | None:intergenic |
| ACCGTTTAATTACGACAATT+TGG | 0.242990 | 8_1:-82407139 | Msa1219480:CDS |
| AAAATATGTGGAACAATATT+AGG | 0.254864 | 8_1:+82406462 | None:intergenic |
| GGCTGTTTCAGAGATGTAAT+TGG | 0.268432 | 8_1:-82406120 | Msa1219480:three_prime_UTR |
| ACATATTATGGTAAGCAAAA+TGG | 0.289437 | 8_1:+82406959 | None:intergenic |
| CACTTATAGCCATCTTGGTT+GGG | 0.298483 | 8_1:+82408428 | None:intergenic |
| CTTCATAATCATTATATTGC+TGG | 0.339093 | 8_1:-82406178 | Msa1219480:three_prime_UTR |
| CCGATTTGATGTGAAAGAAA+TGG | 0.378687 | 8_1:-82406815 | Msa1219480:intron |
| GGAGCAGTGGAGCCTAAAAT+AGG | 0.386174 | 8_1:-82406157 | Msa1219480:three_prime_UTR |
| TCCTGCTTGCACCAACCAAC+TGG | 0.392400 | 8_1:+82407296 | None:intergenic |
| TCCAAATTGTCGTAATTAAA+CGG | 0.394286 | 8_1:+82407138 | None:intergenic |
| TGATGCAGGAGTCCATGCTT+GGG | 0.401400 | 8_1:-82407272 | Msa1219480:CDS |
| GTCGCATTGTTGCTTCAGAT+TGG | 0.418270 | 8_1:-82406501 | Msa1219480:CDS |
| AAAATATGCTTCACTGGATC+TGG | 0.422038 | 8_1:+82406838 | None:intergenic |
| CCACTTATAGCCATCTTGGT+TGG | 0.431380 | 8_1:+82408427 | None:intergenic |
| GAAGATTGAATACCATGTTT+CGG | 0.438346 | 8_1:+82406592 | None:intergenic |
| ATGAATGATGCCTGCATAAC+GGG | 0.440243 | 8_1:+82408379 | None:intergenic |
| ATCTGGTACGCGATCATTGT+GGG | 0.445378 | 8_1:+82406855 | None:intergenic |
| GCTGTTTCAGAGATGTAATT+GGG | 0.445502 | 8_1:-82406119 | Msa1219480:three_prime_UTR |
| GGATAAAGAAGAAGAAGAAT+AGG | 0.445585 | 8_1:-82408650 | Msa1219480:five_prime_UTR |
| AAGCAAAATGGCGCTGGAAC+GGG | 0.448936 | 8_1:+82406971 | None:intergenic |
| AGGGAAGTTGGAGATGGAAT+CGG | 0.449511 | 8_1:+82408578 | None:intergenic |
| GCGTGGAATTCAGCTGATGC+AGG | 0.451298 | 8_1:+82407054 | None:intergenic |
| CCATTTCTTTCACATCAAAT+CGG | 0.454616 | 8_1:+82406815 | None:intergenic |
| GGCGCCACTTATAGCCATCT+TGG | 0.459785 | 8_1:+82408423 | None:intergenic |
| CTGATGCAGGAGTCCATGCT+TGG | 0.463793 | 8_1:-82407273 | Msa1219480:CDS |
| AATCGGAAAATATGCTTCAC+TGG | 0.470992 | 8_1:+82406832 | None:intergenic |
| AGGAGTCCATGCTTGGGGTC+AGG | 0.479875 | 8_1:-82407266 | Msa1219480:intron |
| TCCAGTTGGTTGGTGCAAGC+AGG | 0.481534 | 8_1:-82407297 | Msa1219480:CDS |
| TACGATGGAACCCGTTATGC+AGG | 0.483247 | 8_1:-82408389 | Msa1219480:CDS |
| AATTTGTTATCGTGTGAGGA+AGG | 0.488875 | 8_1:-82408737 | Msa1219480:five_prime_UTR |
| CATACAGAAAGAAGGGAAGT+TGG | 0.491033 | 8_1:+82408566 | None:intergenic |
| ACAATAGAATTGAATAAGTG+TGG | 0.492623 | 8_1:-82408671 | Msa1219480:five_prime_UTR |
| CAGCTAGAAGTTGAAGGCTC+GGG | 0.495832 | 8_1:-82406633 | Msa1219480:CDS |
| GAATAGGCAGTGAAATGAGT+TGG | 0.498812 | 8_1:-82408634 | Msa1219480:exon |
| CATTCATACATACAGAAAGA+AGG | 0.507840 | 8_1:+82408558 | None:intergenic |
| AATAGGCAGTGAAATGAGTT+GGG | 0.520368 | 8_1:-82408633 | Msa1219480:exon |
| TATGGTAAGCAAAATGGCGC+TGG | 0.522963 | 8_1:+82406965 | None:intergenic |
| TTAGAGCAACAAAGCTTCAA+AGG | 0.523117 | 8_1:-82407327 | Msa1219480:CDS |
| GCAGCTAGAAGTTGAAGGCT+CGG | 0.527801 | 8_1:-82406634 | Msa1219480:CDS |
| GGGTTCCATCGTAAGACAAA+AGG | 0.528252 | 8_1:+82408399 | None:intergenic |
| AGTCACTTGTTGCCTCCACC+AGG | 0.529491 | 8_1:-82406351 | Msa1219480:CDS |
| TGAAAATTTGTTATCGTGTG+AGG | 0.530930 | 8_1:-82408741 | Msa1219480:five_prime_UTR |
| GGTGCAAGCAGGACTGATGC+AGG | 0.533920 | 8_1:-82407286 | Msa1219480:CDS |
| GAAAGAAGGGAAGTTGGAGA+TGG | 0.534216 | 8_1:+82408572 | None:intergenic |
| AGCAACAAAGCTTCAAAGGA+AGG | 0.536541 | 8_1:-82407323 | Msa1219480:CDS |
| TAAGCAAAATGGCGCTGGAA+CGG | 0.543419 | 8_1:+82406970 | None:intergenic |
| TGTATTCTAATGATAATACT+AGG | 0.545844 | 8_1:-82406277 | Msa1219480:exon |
| TTTGCAGGGCAACCTGGTGG+AGG | 0.546040 | 8_1:+82406339 | None:intergenic |
| CTACGGCGCATTGTACAGTA+GGG | 0.547422 | 8_1:+82407362 | None:intergenic |
| CATCAGCTGAATTCCACGCT+CGG | 0.550432 | 8_1:-82407050 | Msa1219480:CDS |
| ATTCATACATACAGAAAGAA+GGG | 0.552512 | 8_1:+82408559 | None:intergenic |
| CCAACCAAGATGGCTATAAG+TGG | 0.555642 | 8_1:-82408427 | Msa1219480:CDS |
| TTTGGAGAGTCGTGATCGCA+AGG | 0.562237 | 8_1:-82406442 | Msa1219480:CDS |
| TCACGACTCTCCAAAATATG+TGG | 0.564125 | 8_1:+82406450 | None:intergenic |
| ATTTGTTATCGTGTGAGGAA+GGG | 0.565961 | 8_1:-82408736 | Msa1219480:five_prime_UTR |
| ATCTGACCTGACCCCAAGCA+TGG | 0.568094 | 8_1:+82407260 | None:intergenic |
| TATGTGGAACAATATTAGGA+GGG | 0.569490 | 8_1:+82406466 | None:intergenic |
| TCATTATATTGCTGGAGCAG+TGG | 0.572054 | 8_1:-82406170 | Msa1219480:three_prime_UTR |
| ATATGTGGAACAATATTAGG+AGG | 0.574988 | 8_1:+82406465 | None:intergenic |
| TTCCATCGTAAGACAAAAGG+AGG | 0.577863 | 8_1:+82408402 | None:intergenic |
| AGAGTTCACGCTGCTTTGAA+CGG | 0.578649 | 8_1:-82407114 | Msa1219480:CDS |
| CGTGGAATTCAGCTGATGCA+GGG | 0.588035 | 8_1:+82407055 | None:intergenic |
| TCTCTAACTCGTATATCAGA+AGG | 0.591774 | 8_1:+82407084 | None:intergenic |
| GATCTGGTACGCGATCATTG+TGG | 0.593882 | 8_1:+82406854 | None:intergenic |
| AGGAAGGATCTCCAGTTGGT+TGG | 0.596611 | 8_1:-82407307 | Msa1219480:CDS |
| GCGCTGGAACGGGTCCATGA+TGG | 0.598181 | 8_1:+82406981 | None:intergenic |
| TGCTATTATCTGCCACCACA+TGG | 0.601083 | 8_1:-82406405 | Msa1219480:CDS |
| GAATTCTTCAAGTGATGTTG+TGG | 0.605338 | 8_1:-82408459 | Msa1219480:CDS |
| GAAGTGAAGCCCAACCAAGA+TGG | 0.606632 | 8_1:-82408437 | Msa1219480:CDS |
| AATGAATGATGCCTGCATAA+CGG | 0.610145 | 8_1:+82408378 | None:intergenic |
| ATTGTTGCTTCAGATTGGAA+AGG | 0.610327 | 8_1:-82406496 | Msa1219480:CDS |
| GATTTACAGTGATACCATCA+TGG | 0.611998 | 8_1:-82406995 | Msa1219480:CDS |
| TCATACCATAAGAAAATGCA+AGG | 0.613094 | 8_1:-82406301 | Msa1219480:CDS |
| TCAAAGGAAGGATCTCCAGT+TGG | 0.617658 | 8_1:-82407311 | Msa1219480:CDS |
| AGCAGCAGCAACAACGTCAG+TGG | 0.636505 | 8_1:-82408606 | Msa1219480:CDS |
| GATGCAGGAGTCCATGCTTG+GGG | 0.645475 | 8_1:-82407271 | Msa1219480:CDS |
| TACGGCGCATTGTACAGTAG+GGG | 0.655013 | 8_1:+82407363 | None:intergenic |
| ATGTGGAACAATATTAGGAG+GGG | 0.656496 | 8_1:+82406467 | None:intergenic |
| GTATAGACAAGTCCGAAACA+TGG | 0.664436 | 8_1:-82406604 | Msa1219480:intron |
| ACGGCGCATTGTACAGTAGG+GGG | 0.692690 | 8_1:+82407364 | None:intergenic |
| GAAACAAGACAAAGACCATG+TGG | 0.703286 | 8_1:+82406390 | None:intergenic |
| ACAAGACAAAGACCATGTGG+TGG | 0.708267 | 8_1:+82406393 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAAAAAACTTGAT+GGG | + | chr8_1:82406108-82406127 | None:intergenic | 10.0% |
| !! | AATAAAAATAAAAAACTTGA+TGG | + | chr8_1:82406109-82406128 | None:intergenic | 10.0% |
| !!! | GTCTAAAATTTAAATATTAA+TGG | - | chr8_1:82408563-82408582 | Msa1219480:intron | 10.0% |
| !! | AACTAAAATAAGTATAGTAT+AGG | - | chr8_1:82406515-82406534 | Msa1219480:intron | 15.0% |
| !! | CCAAATATAAAAATCTAATA+TGG | + | chr8_1:82406663-82406682 | None:intergenic | 15.0% |
| !!! | CCATATTAGATTTTTATATT+TGG | - | chr8_1:82406660-82406679 | Msa1219480:intron | 15.0% |
| !! | CCTAATATAAAAATCTAATA+CGG | + | chr8_1:82406831-82406850 | None:intergenic | 15.0% |
| !! | TATTGAGTTTATACATATTA+TGG | + | chr8_1:82407859-82407878 | None:intergenic | 15.0% |
| !!! | CAACAATAACTTTTTTAATT+TGG | + | chr8_1:82408241-82408260 | None:intergenic | 15.0% |
| !!! | CCGTATTAGATTTTTATATT+AGG | - | chr8_1:82406828-82406847 | Msa1219480:CDS | 20.0% |
| !!! | TGTTTTTATTCATTAAATGC+TGG | + | chr8_1:82407340-82407359 | None:intergenic | 20.0% |
| !!! | TCTAATTAAAGCTTTTTCTA+CGG | + | chr8_1:82407461-82407480 | None:intergenic | 20.0% |
| !! | TTTCAAAAAATAAACCAAGA+AGG | + | chr8_1:82408094-82408113 | None:intergenic | 20.0% |
| !! | AAAATATGTGGAACAATATT+AGG | + | chr8_1:82408344-82408363 | None:intergenic | 20.0% |
| !!! | TAATATTGTTCCACATATTT+TGG | - | chr8_1:82408343-82408362 | Msa1219480:intron | 20.0% |
| !! | TGTATTCTAATGATAATACT+AGG | - | chr8_1:82408526-82408545 | Msa1219480:intron | 20.0% |
| ! | ACAATAGAATTGAATAAGTG+TGG | - | chr8_1:82406132-82406151 | Msa1219480:three_prime_UTR | 25.0% |
| ! | ATTCATACATACAGAAAGAA+GGG | + | chr8_1:82406247-82406266 | None:intergenic | 25.0% |
| ! | AAGTTTCGGATAAAAAAGAT+AGG | + | chr8_1:82406924-82406943 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTATCCGAAACTT+AGG | - | chr8_1:82406924-82406943 | Msa1219480:CDS | 25.0% |
| ! | TGCAATATGCAAGTAATATT+GGG | + | chr8_1:82406956-82406975 | None:intergenic | 25.0% |
| ! | ATGCAATATGCAAGTAATAT+TGG | + | chr8_1:82406957-82406976 | None:intergenic | 25.0% |
| !!! | ACTTGGATTTGGTATTTTTA+AGG | + | chr8_1:82407196-82407215 | None:intergenic | 25.0% |
| ! | TAAAAATACCAAATCCAAGT+TGG | - | chr8_1:82407196-82407215 | Msa1219480:intron | 25.0% |
| !!! | TTTTTCTCCATTATTTTGAC+TGG | - | chr8_1:82407383-82407402 | Msa1219480:CDS | 25.0% |
| ! | TTATAACTTATTGTGACTGT+AGG | - | chr8_1:82407625-82407644 | Msa1219480:intron | 25.0% |
| ! | TCCAAATTGTCGTAATTAAA+CGG | + | chr8_1:82407668-82407687 | None:intergenic | 25.0% |
| ! | ACATATTATGGTAAGCAAAA+TGG | + | chr8_1:82407847-82407866 | None:intergenic | 25.0% |
| !! | AAGCTGCAAGATATTTTATT+GGG | - | chr8_1:82407894-82407913 | Msa1219480:intron | 25.0% |
| !! | ATATATCTGTTTGCATTTTC+AGG | - | chr8_1:82408280-82408299 | Msa1219480:intron | 25.0% |
| ! | CTTCATAATCATTATATTGC+TGG | - | chr8_1:82408625-82408644 | Msa1219480:exon | 25.0% |
| !! | AAAAGCTAAACTCCTATTTT+AGG | + | chr8_1:82408661-82408680 | None:intergenic | 25.0% |
| !!! | AAAATAGGAGTTTAGCTTTT+AGG | - | chr8_1:82408661-82408680 | Msa1219480:five_prime_UTR | 25.0% |
| !!! | AAATAGGAGTTTAGCTTTTA+GGG | - | chr8_1:82408662-82408681 | Msa1219480:five_prime_UTR | 25.0% |
| !! | GTGATCATTGAACTAAATTT+TGG | + | chr8_1:82408743-82408762 | None:intergenic | 25.0% |
| GGATAAAGAAGAAGAAGAAT+AGG | - | chr8_1:82406153-82406172 | Msa1219480:three_prime_UTR | 30.0% | |
| CATTCATACATACAGAAAGA+AGG | + | chr8_1:82406248-82406267 | None:intergenic | 30.0% | |
| GAAGAGAAAGAGAAAAAAGA+GGG | + | chr8_1:82406281-82406300 | None:intergenic | 30.0% | |
| AGAAGAGAAAGAGAAAAAAG+AGG | + | chr8_1:82406282-82406301 | None:intergenic | 30.0% | |
| ATAGTATAGGCTCTTAATGT+TGG | - | chr8_1:82406528-82406547 | Msa1219480:intron | 30.0% | |
| CACTCTTTATGAACTCTTAT+TGG | - | chr8_1:82406726-82406745 | Msa1219480:intron | 30.0% | |
| TGGTGCATGTATATAAATAG+TGG | - | chr8_1:82406780-82406799 | Msa1219480:intron | 30.0% | |
| GGTGCATGTATATAAATAGT+GGG | - | chr8_1:82406781-82406800 | Msa1219480:intron | 30.0% | |
| AAAATCTAATACGGTATCTG+AGG | + | chr8_1:82406822-82406841 | None:intergenic | 30.0% | |
| TTGGGAAAAAACCTAAGTTT+CGG | + | chr8_1:82406938-82406957 | None:intergenic | 30.0% | |
| GCATTTCTCTCAAAGTAAAT+AGG | + | chr8_1:82407055-82407074 | None:intergenic | 30.0% | |
| !! | AAAATGGTGTCACAAACTTA+AGG | + | chr8_1:82407124-82407143 | None:intergenic | 30.0% |
| !! | ATTTTGAGCTTTATCCAACT+TGG | + | chr8_1:82407213-82407232 | None:intergenic | 30.0% |
| !! | GGGATTTGGTATTCTTTTTA+TGG | + | chr8_1:82407279-82407298 | None:intergenic | 30.0% |
| GAAAACTACACCTTTCTATA+TGG | + | chr8_1:82407318-82407337 | None:intergenic | 30.0% | |
| ACCGTTTAATTACGACAATT+TGG | - | chr8_1:82407664-82407683 | Msa1219480:intron | 30.0% | |
| ! | GAAGCTGCAAGATATTTTAT+TGG | - | chr8_1:82407893-82407912 | Msa1219480:intron | 30.0% |
| CCATTTCTTTCACATCAAAT+CGG | + | chr8_1:82407991-82408010 | None:intergenic | 30.0% | |
| TAATAATGTTCACAGCAGTA+CGG | + | chr8_1:82408041-82408060 | None:intergenic | 30.0% | |
| TTACCATGTTTATACCTTCT+TGG | - | chr8_1:82408077-82408096 | Msa1219480:intron | 30.0% | |
| ! | AAACCAAGAAGGTATAAACA+TGG | + | chr8_1:82408083-82408102 | None:intergenic | 30.0% |
| GAAGATTGAATACCATGTTT+CGG | + | chr8_1:82408214-82408233 | None:intergenic | 30.0% | |
| TATGTGGAACAATATTAGGA+GGG | + | chr8_1:82408340-82408359 | None:intergenic | 30.0% | |
| ATATGTGGAACAATATTAGG+AGG | + | chr8_1:82408341-82408360 | None:intergenic | 30.0% | |
| TCATACCATAAGAAAATGCA+AGG | - | chr8_1:82408502-82408521 | Msa1219480:intron | 30.0% | |
| ! | TACAACCTTGCATTTTCTTA+TGG | + | chr8_1:82408510-82408529 | None:intergenic | 30.0% |
| !! | AATTTGTTATCGTGTGAGGA+AGG | - | chr8_1:82406066-82406085 | Msa1219480:three_prime_UTR | 35.0% |
| !! | ATTTGTTATCGTGTGAGGAA+GGG | - | chr8_1:82406067-82406086 | Msa1219480:three_prime_UTR | 35.0% |
| AATAGGCAGTGAAATGAGTT+GGG | - | chr8_1:82406170-82406189 | Msa1219480:three_prime_UTR | 35.0% | |
| GAATTCTTCAAGTGATGTTG+TGG | - | chr8_1:82406344-82406363 | Msa1219480:CDS | 35.0% | |
| AATGAATGATGCCTGCATAA+CGG | + | chr8_1:82406428-82406447 | None:intergenic | 35.0% | |
| AATCTCACGTTCAATGCTAT+TGG | - | chr8_1:82406754-82406773 | Msa1219480:intron | 35.0% | |
| ATCTCACGTTCAATGCTATT+GGG | - | chr8_1:82406755-82406774 | Msa1219480:intron | 35.0% | |
| CTTTACGAAAACGACTTGTA+AGG | - | chr8_1:82406861-82406880 | Msa1219480:CDS | 35.0% | |
| GAAAACGACTTGTAAGGTAA+GGG | - | chr8_1:82406867-82406886 | Msa1219480:CDS | 35.0% | |
| AAAACGACTTGTAAGGTAAG+GGG | - | chr8_1:82406868-82406887 | Msa1219480:CDS | 35.0% | |
| TCTCAAACATTGTAACCATG+AGG | - | chr8_1:82407005-82407024 | Msa1219480:CDS | 35.0% | |
| !! | TTTGTGACACCATTTTTGTG+AGG | - | chr8_1:82407128-82407147 | Msa1219480:CDS | 35.0% |
| ! | AGCTTTATCCAACTTGGATT+TGG | + | chr8_1:82407207-82407226 | None:intergenic | 35.0% |
| ! | TGAATGAAGTTTTCAGCTTG+AGG | - | chr8_1:82407243-82407262 | Msa1219480:intron | 35.0% |
| GACTCTTGATCCATATAGAA+AGG | - | chr8_1:82407305-82407324 | Msa1219480:CDS | 35.0% | |
| ACAGTCACCAGTCAAAATAA+TGG | + | chr8_1:82407393-82407412 | None:intergenic | 35.0% | |
| TTAGAGCAACAAAGCTTCAA+AGG | - | chr8_1:82407476-82407495 | Msa1219480:intron | 35.0% | |
| TCTCTAACTCGTATATCAGA+AGG | + | chr8_1:82407722-82407741 | None:intergenic | 35.0% | |
| GATTTACAGTGATACCATCA+TGG | - | chr8_1:82407808-82407827 | Msa1219480:intron | 35.0% | |
| AAAATATGCTTCACTGGATC+TGG | + | chr8_1:82407968-82407987 | None:intergenic | 35.0% | |
| AATCGGAAAATATGCTTCAC+TGG | + | chr8_1:82407974-82407993 | None:intergenic | 35.0% | |
| ! | CCGATTTGATGTGAAAGAAA+TGG | - | chr8_1:82407988-82408007 | Msa1219480:intron | 35.0% |
| ! | ATTGTTGCTTCAGATTGGAA+AGG | - | chr8_1:82408307-82408326 | Msa1219480:intron | 35.0% |
| ATGTGGAACAATATTAGGAG+GGG | + | chr8_1:82408339-82408358 | None:intergenic | 35.0% | |
| ! | GCTGTTTCAGAGATGTAATT+GGG | - | chr8_1:82408684-82408703 | Msa1219480:five_prime_UTR | 35.0% |
| GAATAGGCAGTGAAATGAGT+TGG | - | chr8_1:82406169-82406188 | Msa1219480:three_prime_UTR | 40.0% | |
| CATACAGAAAGAAGGGAAGT+TGG | + | chr8_1:82406240-82406259 | None:intergenic | 40.0% | |
| CACTTATAGCCATCTTGGTT+GGG | + | chr8_1:82406378-82406397 | None:intergenic | 40.0% | |
| TTCCATCGTAAGACAAAAGG+AGG | + | chr8_1:82406404-82406423 | None:intergenic | 40.0% | |
| ATGAATGATGCCTGCATAAC+GGG | + | chr8_1:82406427-82406446 | None:intergenic | 40.0% | |
| GTTGGAGATACTCACTTGTA+AGG | - | chr8_1:82406546-82406565 | Msa1219480:intron | 40.0% | |
| TCTTATCGCTTCAACACCAT+TGG | - | chr8_1:82406586-82406605 | Msa1219480:intron | 40.0% | |
| !! | ACTTGGTGCGTGTGTATAAA+CGG | - | chr8_1:82406609-82406628 | Msa1219480:CDS | 40.0% |
| TGGTATTCGAGCTTACCAAT+CGG | + | chr8_1:82406643-82406662 | None:intergenic | 40.0% | |
| !! | AGTCACAAGACGGTTTTGTA+AGG | + | chr8_1:82406696-82406715 | None:intergenic | 40.0% |
| AAAACCGTCTTGTGACTTGA+GGG | - | chr8_1:82406699-82406718 | Msa1219480:intron | 40.0% | |
| CGAAAACGACTTGTAAGGTA+AGG | - | chr8_1:82406866-82406885 | Msa1219480:CDS | 40.0% | |
| TGATACGAATCAGAACCTCA+TGG | + | chr8_1:82407023-82407042 | None:intergenic | 40.0% | |
| !! | TGGTGTCACAAACTTAAGGT+TGG | + | chr8_1:82407120-82407139 | None:intergenic | 40.0% |
| CAGACAATGCCTCACAAAAA+TGG | + | chr8_1:82407140-82407159 | None:intergenic | 40.0% | |
| ATGGATCAAGAGTCAAAGCA+GGG | + | chr8_1:82407299-82407318 | None:intergenic | 40.0% | |
| TATGGATCAAGAGTCAAAGC+AGG | + | chr8_1:82407300-82407319 | None:intergenic | 40.0% | |
| ! | TTTGACTGGTGACTGTTTTC+AGG | - | chr8_1:82407397-82407416 | Msa1219480:intron | 40.0% |
| AGCAACAAAGCTTCAAAGGA+AGG | - | chr8_1:82407480-82407499 | Msa1219480:intron | 40.0% | |
| AAGCTGAAATTGCGCACAAA+AGG | + | chr8_1:82407578-82407597 | None:intergenic | 40.0% | |
| ! | AGCTTTCAAGTGGCAAACAT+TGG | - | chr8_1:82407593-82407612 | Msa1219480:intron | 40.0% |
| TCACGTCAATATCAATGTGC+AGG | - | chr8_1:82408136-82408155 | Msa1219480:intron | 40.0% | |
| CACGTCAATATCAATGTGCA+GGG | - | chr8_1:82408137-82408156 | Msa1219480:intron | 40.0% | |
| ! | CTTTTGCAGCTAGAAGTTGA+AGG | - | chr8_1:82408164-82408183 | Msa1219480:intron | 40.0% |
| GTATAGACAAGTCCGAAACA+TGG | - | chr8_1:82408199-82408218 | Msa1219480:intron | 40.0% | |
| TCACGACTCTCCAAAATATG+TGG | + | chr8_1:82408356-82408375 | None:intergenic | 40.0% | |
| GAAACAAGACAAAGACCATG+TGG | + | chr8_1:82408416-82408435 | None:intergenic | 40.0% | |
| TCATTATATTGCTGGAGCAG+TGG | - | chr8_1:82408633-82408652 | Msa1219480:exon | 40.0% | |
| ! | GGCTGTTTCAGAGATGTAAT+TGG | - | chr8_1:82408683-82408702 | Msa1219480:five_prime_UTR | 40.0% |
| AGGGAAGTTGGAGATGGAAT+CGG | + | chr8_1:82406228-82406247 | None:intergenic | 45.0% | |
| GAAAGAAGGGAAGTTGGAGA+TGG | + | chr8_1:82406234-82406253 | None:intergenic | 45.0% | |
| CCACTTATAGCCATCTTGGT+TGG | + | chr8_1:82406379-82406398 | None:intergenic | 45.0% | |
| CCAACCAAGATGGCTATAAG+TGG | - | chr8_1:82406376-82406395 | Msa1219480:CDS | 45.0% | |
| GGGTTCCATCGTAAGACAAA+AGG | + | chr8_1:82406407-82406426 | None:intergenic | 45.0% | |
| TCACTTGTAAGGTGAGAGAG+AGG | - | chr8_1:82406557-82406576 | Msa1219480:intron | 45.0% | |
| GGTATTCGAGCTTACCAATC+GGG | + | chr8_1:82406642-82406661 | None:intergenic | 45.0% | |
| !! | CGGTTTTGTAAGGACGAGTT+TGG | + | chr8_1:82406686-82406705 | None:intergenic | 45.0% |
| CAAAACCGTCTTGTGACTTG+AGG | - | chr8_1:82406698-82406717 | Msa1219480:intron | 45.0% | |
| AAACCGTCTTGTGACTTGAG+GGG | - | chr8_1:82406700-82406719 | Msa1219480:intron | 45.0% | |
| ACGTTCAATGCTATTGGGCT+TGG | - | chr8_1:82406760-82406779 | Msa1219480:intron | 45.0% | |
| CAAGAGTCAAAGCAGGGATT+TGG | + | chr8_1:82407293-82407312 | None:intergenic | 45.0% | |
| !! | GTTTTCAGGCTGGCAATATC+AGG | - | chr8_1:82407411-82407430 | Msa1219480:intron | 45.0% |
| TCAAAGGAAGGATCTCCAGT+TGG | - | chr8_1:82407492-82407511 | Msa1219480:intron | 45.0% | |
| GCGCAATTTCAGCTTTCAAG+TGG | - | chr8_1:82407583-82407602 | Msa1219480:intron | 45.0% | |
| ! | AGAGTTCACGCTGCTTTGAA+CGG | - | chr8_1:82407689-82407708 | Msa1219480:intron | 45.0% |
| ! | TTTTTGCAGAAAACCGAGCG+TGG | + | chr8_1:82407769-82407788 | None:intergenic | 45.0% |
| ! | TAAGCAAAATGGCGCTGGAA+CGG | + | chr8_1:82407836-82407855 | None:intergenic | 45.0% |
| TATGGTAAGCAAAATGGCGC+TGG | + | chr8_1:82407841-82407860 | None:intergenic | 45.0% | |
| ATCTGGTACGCGATCATTGT+GGG | + | chr8_1:82407951-82407970 | None:intergenic | 45.0% | |
| ! | GTCGCATTGTTGCTTCAGAT+TGG | - | chr8_1:82408302-82408321 | Msa1219480:intron | 45.0% |
| TGCTATTATCTGCCACCACA+TGG | - | chr8_1:82408398-82408417 | Msa1219480:CDS | 45.0% | |
| ACAAGACAAAGACCATGTGG+TGG | + | chr8_1:82408413-82408432 | None:intergenic | 45.0% | |
| ! | GCATGCCAGAACTTTTTGCA+GGG | + | chr8_1:82408481-82408500 | None:intergenic | 45.0% |
| ! | TGCATGCCAGAACTTTTTGC+AGG | + | chr8_1:82408482-82408501 | None:intergenic | 45.0% |
| GAAGTGAAGCCCAACCAAGA+TGG | - | chr8_1:82406366-82406385 | Msa1219480:CDS | 50.0% | |
| ! | CGCCTCCTTTTGTCTTACGA+TGG | - | chr8_1:82406399-82406418 | Msa1219480:CDS | 50.0% |
| TACGATGGAACCCGTTATGC+AGG | - | chr8_1:82406414-82406433 | Msa1219480:CDS | 50.0% | |
| CGCTTCAACACCATTGGACT+TGG | - | chr8_1:82406592-82406611 | Msa1219480:intron | 50.0% | |
| TACACACGCACCAAGTCCAA+TGG | + | chr8_1:82406605-82406624 | None:intergenic | 50.0% | |
| GGTGCGTGTGTATAAACGGT+TGG | - | chr8_1:82406613-82406632 | Msa1219480:CDS | 50.0% | |
| GCGTGTGTATAAACGGTTGG+TGG | - | chr8_1:82406616-82406635 | Msa1219480:CDS | 50.0% | |
| ACACCCCTCAAGTCACAAGA+CGG | + | chr8_1:82406706-82406725 | None:intergenic | 50.0% | |
| ! | GGTATCTGAGGCTATCGATC+GGG | + | chr8_1:82406810-82406829 | None:intergenic | 50.0% |
| ! | CGGTATCTGAGGCTATCGAT+CGG | + | chr8_1:82406811-82406830 | None:intergenic | 50.0% |
| !! | ACTGGTGACTGTTTTCAGGC+TGG | - | chr8_1:82407401-82407420 | Msa1219480:intron | 50.0% |
| TACGGCGCATTGTACAGTAG+GGG | + | chr8_1:82407443-82407462 | None:intergenic | 50.0% | |
| CTACGGCGCATTGTACAGTA+GGG | + | chr8_1:82407444-82407463 | None:intergenic | 50.0% | |
| TCTACGGCGCATTGTACAGT+AGG | + | chr8_1:82407445-82407464 | None:intergenic | 50.0% | |
| AGGAAGGATCTCCAGTTGGT+TGG | - | chr8_1:82407496-82407515 | Msa1219480:intron | 50.0% | |
| TGATGCAGGAGTCCATGCTT+GGG | - | chr8_1:82407531-82407550 | Msa1219480:intron | 50.0% | |
| CGTGGAATTCAGCTGATGCA+GGG | + | chr8_1:82407751-82407770 | None:intergenic | 50.0% | |
| CATCAGCTGAATTCCACGCT+CGG | - | chr8_1:82407753-82407772 | Msa1219480:intron | 50.0% | |
| ! | AAGCAAAATGGCGCTGGAAC+GGG | + | chr8_1:82407835-82407854 | None:intergenic | 50.0% |
| GATCTGGTACGCGATCATTG+TGG | + | chr8_1:82407952-82407971 | None:intergenic | 50.0% | |
| GCAGCTAGAAGTTGAAGGCT+CGG | - | chr8_1:82408169-82408188 | Msa1219480:intron | 50.0% | |
| CAGCTAGAAGTTGAAGGCTC+GGG | - | chr8_1:82408170-82408189 | Msa1219480:intron | 50.0% | |
| TTTGGAGAGTCGTGATCGCA+AGG | - | chr8_1:82408361-82408380 | Msa1219480:intron | 50.0% | |
| ! | GAACTTTTTGCAGGGCAACC+TGG | + | chr8_1:82408473-82408492 | None:intergenic | 50.0% |
| GGTTGCCCTGCAAAAAGTTC+TGG | - | chr8_1:82408473-82408492 | Msa1219480:intron | 50.0% | |
| GGAGCAGTGGAGCCTAAAAT+AGG | - | chr8_1:82408646-82408665 | Msa1219480:five_prime_UTR | 50.0% | |
| AGCAGCAGCAACAACGTCAG+TGG | - | chr8_1:82406197-82406216 | Msa1219480:three_prime_UTR | 55.0% | |
| GGCGCCACTTATAGCCATCT+TGG | + | chr8_1:82406383-82406402 | None:intergenic | 55.0% | |
| !! | TAAACGGTTGGTGGCCCGAT+TGG | - | chr8_1:82406625-82406644 | Msa1219480:CDS | 55.0% |
| ACGGCGCATTGTACAGTAGG+GGG | + | chr8_1:82407442-82407461 | None:intergenic | 55.0% | |
| ! | TCCAGTTGGTTGGTGCAAGC+AGG | - | chr8_1:82407506-82407525 | Msa1219480:intron | 55.0% |
| TCCTGCTTGCACCAACCAAC+TGG | + | chr8_1:82407510-82407529 | None:intergenic | 55.0% | |
| CTGATGCAGGAGTCCATGCT+TGG | - | chr8_1:82407530-82407549 | Msa1219480:intron | 55.0% | |
| GATGCAGGAGTCCATGCTTG+GGG | - | chr8_1:82407532-82407551 | Msa1219480:intron | 55.0% | |
| ATCTGACCTGACCCCAAGCA+TGG | + | chr8_1:82407546-82407565 | None:intergenic | 55.0% | |
| GCGTGGAATTCAGCTGATGC+AGG | + | chr8_1:82407752-82407771 | None:intergenic | 55.0% | |
| ! | AGTCACTTGTTGCCTCCACC+AGG | - | chr8_1:82408452-82408471 | Msa1219480:CDS | 55.0% |
| ! | CTTTTTGCAGGGCAACCTGG+TGG | + | chr8_1:82408470-82408489 | None:intergenic | 55.0% |
| GGTGCAAGCAGGACTGATGC+AGG | - | chr8_1:82407517-82407536 | Msa1219480:intron | 60.0% | |
| AGGAGTCCATGCTTGGGGTC+AGG | - | chr8_1:82407537-82407556 | Msa1219480:intron | 60.0% | |
| TTTGCAGGGCAACCTGGTGG+AGG | + | chr8_1:82408467-82408486 | None:intergenic | 60.0% | |
| GCGCTGGAACGGGTCCATGA+TGG | + | chr8_1:82407825-82407844 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 82406063 | 82408762 | 82406063 | ID=Msa1219480;Name=Msa1219480 |
| chr8_1 | mRNA | 82406063 | 82408762 | 82406063 | ID=Msa1219480-mRNA-1;Parent=Msa1219480;Name=Msa1219480-mRNA-1;_AED=0.34;_eAED=0.34;_QI=120|0.4|0.5|1|1|1|6|227|329 |
| chr8_1 | exon | 82406063 | 82406523 | 82406063 | ID=Msa1219480-mRNA-1:exon:29367;Parent=Msa1219480-mRNA-1 |
| chr8_1 | exon | 82406605 | 82406667 | 82406605 | ID=Msa1219480-mRNA-1:exon:29366;Parent=Msa1219480-mRNA-1 |
| chr8_1 | exon | 82406816 | 82407178 | 82406816 | ID=Msa1219480-mRNA-1:exon:29365;Parent=Msa1219480-mRNA-1 |
| chr8_1 | exon | 82407267 | 82407406 | 82407267 | ID=Msa1219480-mRNA-1:exon:29364;Parent=Msa1219480-mRNA-1 |
| chr8_1 | exon | 82408366 | 82408483 | 82408366 | ID=Msa1219480-mRNA-1:exon:29363;Parent=Msa1219480-mRNA-1 |
| chr8_1 | exon | 82408571 | 82408762 | 82408571 | ID=Msa1219480-mRNA-1:exon:29362;Parent=Msa1219480-mRNA-1 |
| chr8_1 | five_prime_UTR | 82408643 | 82408762 | 82408643 | ID=Msa1219480-mRNA-1:five_prime_utr;Parent=Msa1219480-mRNA-1 |
| chr8_1 | CDS | 82408571 | 82408642 | 82408571 | ID=Msa1219480-mRNA-1:cds;Parent=Msa1219480-mRNA-1 |
| chr8_1 | CDS | 82408366 | 82408483 | 82408366 | ID=Msa1219480-mRNA-1:cds;Parent=Msa1219480-mRNA-1 |
| chr8_1 | CDS | 82407267 | 82407406 | 82407267 | ID=Msa1219480-mRNA-1:cds;Parent=Msa1219480-mRNA-1 |
| chr8_1 | CDS | 82406816 | 82407178 | 82406816 | ID=Msa1219480-mRNA-1:cds;Parent=Msa1219480-mRNA-1 |
| chr8_1 | CDS | 82406605 | 82406667 | 82406605 | ID=Msa1219480-mRNA-1:cds;Parent=Msa1219480-mRNA-1 |
| chr8_1 | CDS | 82406290 | 82406523 | 82406290 | ID=Msa1219480-mRNA-1:cds;Parent=Msa1219480-mRNA-1 |
| chr8_1 | three_prime_UTR | 82406063 | 82406289 | 82406063 | ID=Msa1219480-mRNA-1:three_prime_utr;Parent=Msa1219480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
