Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415160 | sp|Q6MEE7|TRUA1_PARUW | 37.545 | 277 | 146 | 6 | 43 | 317 | 4 | 255 | 6.41e-60 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415160 | A0A396IFU3 | 91.202 | 341 | 10 | 2 | 1 | 340 | 2 | 323 | 0.0 | 636 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1409320 | Msa1415160 | 0.891465 | 3.875422e-74 | -8.615850e-47 |
| Msa1266820 | Msa1415160 | 0.848948 | 4.425221e-60 | -8.615850e-47 |
| Msa1040390 | Msa1415160 | 0.802117 | 6.533188e-49 | -8.615850e-47 |
| Msa1219480 | Msa1415160 | 0.875862 | 2.205351e-68 | -8.615850e-47 |
| Msa1219490 | Msa1415160 | 0.893118 | 8.460181e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415160 | MtrunA17_Chr4g0069331 | 91.202 | 341 | 10 | 2 | 1 | 340 | 2 | 323 | 0.0 | 636 |
| Msa1415160 | MtrunA17_Chr1g0201101 | 28.425 | 292 | 153 | 12 | 23 | 286 | 67 | 330 | 1.48e-16 | 80.1 |
| Msa1415160 | MtrunA17_Chr2g0277101 | 25.854 | 205 | 108 | 6 | 42 | 228 | 43 | 221 | 1.73e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415160 | AT3G06950.1 | 64.110 | 326 | 91 | 4 | 17 | 340 | 21 | 322 | 7.71e-148 | 419 |
| Msa1415160 | AT1G34150.1 | 30.736 | 231 | 116 | 8 | 83 | 287 | 114 | 326 | 8.95e-16 | 78.6 |
Find 85 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATTGTTCCACATATTT+TGG | 0.121197 | tig0024176:+32845 | Msa1415160:CDS |
| GTGATCATTGAACTAAATTT+TGG | 0.137694 | tig0024176:-33242 | None:intergenic |
| GTCTAAAATTTAAATATTAA+TGG | 0.143383 | tig0024176:+33065 | Msa1415160:three_prime_UTR |
| TATTGAGTTTATACATATTA+TGG | 0.228707 | tig0024176:-32358 | None:intergenic |
| ACCGTTTAATTACGACAATT+TGG | 0.242990 | tig0024176:+32166 | Msa1415160:CDS |
| AAAATATGTGGAACAATATT+AGG | 0.254864 | tig0024176:-32843 | None:intergenic |
| GGCTGTTTCAGAGATGTAAT+TGG | 0.268432 | tig0024176:+33185 | Msa1415160:three_prime_UTR |
| ACATATTATGGTAAGCAAAA+TGG | 0.289437 | tig0024176:-32346 | None:intergenic |
| CACTTATAGCCATCTTGGTT+GGG | 0.298483 | tig0024176:-30850 | None:intergenic |
| CTTCATAATCATTATATTGC+TGG | 0.339093 | tig0024176:+33127 | Msa1415160:three_prime_UTR |
| CCGATTTGATGTGAAAGAAA+TGG | 0.378687 | tig0024176:+32490 | Msa1415160:CDS |
| GGAGCAGTGGAGCCTAAAAT+AGG | 0.386174 | tig0024176:+33148 | Msa1415160:three_prime_UTR |
| TCCTGCTTGCACCAACCAAC+TGG | 0.392400 | tig0024176:-32009 | None:intergenic |
| TCCAAATTGTCGTAATTAAA+CGG | 0.394286 | tig0024176:-32167 | None:intergenic |
| GATATGATTGCCTGCATAAC+GGG | 0.394519 | tig0024176:-30899 | None:intergenic |
| TGATGCAGGAGTCCATGCTT+GGG | 0.401400 | tig0024176:+32033 | Msa1415160:CDS |
| GTCGCATTGTTGCTTCAGAT+TGG | 0.418270 | tig0024176:+32804 | Msa1415160:CDS |
| AAAATATGCTTCACTGGATC+TGG | 0.422038 | tig0024176:-32467 | None:intergenic |
| CCACTTATAGCCATCTTGGT+TGG | 0.431380 | tig0024176:-30851 | None:intergenic |
| GAAGATTGAATACCATGTTT+CGG | 0.438346 | tig0024176:-32713 | None:intergenic |
| ATCTGGTACGCGATCATTGT+GGG | 0.445378 | tig0024176:-32450 | None:intergenic |
| GCTGTTTCAGAGATGTAATT+GGG | 0.445502 | tig0024176:+33186 | Msa1415160:three_prime_UTR |
| AAGCAAAATGGCGCTGGAAC+GGG | 0.448936 | tig0024176:-32334 | None:intergenic |
| AGGGAAGTTGGAGATGGAAT+CGG | 0.449511 | tig0024176:-30703 | None:intergenic |
| GCGTGGAATTCAGCTGATGC+AGG | 0.451298 | tig0024176:-32251 | None:intergenic |
| CCATTTCTTTCACATCAAAT+CGG | 0.454616 | tig0024176:-32490 | None:intergenic |
| GGCGCCACTTATAGCCATCT+TGG | 0.459785 | tig0024176:-30855 | None:intergenic |
| CTGATGCAGGAGTCCATGCT+TGG | 0.463793 | tig0024176:+32032 | Msa1415160:CDS |
| AATCGGAAAATATGCTTCAC+TGG | 0.470992 | tig0024176:-32473 | None:intergenic |
| AGGAGTCCATGCTTGGGGTC+AGG | 0.479875 | tig0024176:+32039 | Msa1415160:CDS |
| TCCAGTTGGTTGGTGCAAGC+AGG | 0.481534 | tig0024176:+32008 | Msa1415160:CDS |
| TACGATGGAACCCGTTATGC+AGG | 0.483247 | tig0024176:+30889 | Msa1415160:CDS |
| CATACAGAAAGAAGGGAAGT+TGG | 0.491033 | tig0024176:-30715 | None:intergenic |
| CAGCTAGAAGTTGAAGGCTC+GGG | 0.495832 | tig0024176:+32672 | Msa1415160:CDS |
| GAATAGGCAGTGAAATGAGT+TGG | 0.498812 | tig0024176:+30647 | Msa1415160:exon |
| CATTCATACATACAGAAAGA+AGG | 0.507840 | tig0024176:-30723 | None:intergenic |
| AATTTCTTATCGTGTGAGGA+AGG | 0.513271 | tig0024176:+30523 | Msa1415160:five_prime_UTR |
| GAATGAATGAAAAGAGAAGA+AGG | 0.515802 | tig0024176:-30925 | None:intergenic |
| AATAGGCAGTGAAATGAGTT+GGG | 0.520368 | tig0024176:+30648 | Msa1415160:exon |
| TATGGTAAGCAAAATGGCGC+TGG | 0.522963 | tig0024176:-32340 | None:intergenic |
| TTAGAGCAACAAAGCTTCAA+AGG | 0.523117 | tig0024176:+31978 | Msa1415160:CDS |
| GCAGCTAGAAGTTGAAGGCT+CGG | 0.527801 | tig0024176:+32671 | Msa1415160:CDS |
| GGGTTCCATCGTAAGACAAA+AGG | 0.528252 | tig0024176:-30879 | None:intergenic |
| AGTCACTTGTTGCCTCCACC+AGG | 0.529491 | tig0024176:+32954 | Msa1415160:CDS |
| GGTGCAAGCAGGACTGATGC+AGG | 0.533920 | tig0024176:+32019 | Msa1415160:CDS |
| GAAAGAAGGGAAGTTGGAGA+TGG | 0.534216 | tig0024176:-30709 | None:intergenic |
| AGCAACAAAGCTTCAAAGGA+AGG | 0.536541 | tig0024176:+31982 | Msa1415160:CDS |
| TGATATGATTGCCTGCATAA+CGG | 0.539705 | tig0024176:-30900 | None:intergenic |
| TAAGCAAAATGGCGCTGGAA+CGG | 0.543419 | tig0024176:-32335 | None:intergenic |
| TGTATTCTAATGATAATACT+AGG | 0.545844 | tig0024176:+33028 | Msa1415160:exon |
| TTTGCAGGGCAACCTGGTGG+AGG | 0.546040 | tig0024176:-32966 | None:intergenic |
| CTACGGCGCATTGTACAGTA+GGG | 0.547422 | tig0024176:-31943 | None:intergenic |
| TGAAAATTTCTTATCGTGTG+AGG | 0.549187 | tig0024176:+30519 | None:intergenic |
| CATCAGCTGAATTCCACGCT+CGG | 0.550432 | tig0024176:+32255 | Msa1415160:CDS |
| ATTCATACATACAGAAAGAA+GGG | 0.552512 | tig0024176:-30722 | None:intergenic |
| CCAACCAAGATGGCTATAAG+TGG | 0.555642 | tig0024176:+30851 | Msa1415160:CDS |
| TTTGGAGAGTCGTGATCGCA+AGG | 0.562237 | tig0024176:+32863 | Msa1415160:CDS |
| TCACGACTCTCCAAAATATG+TGG | 0.564125 | tig0024176:-32855 | None:intergenic |
| ATCTGACCTGACCCCAAGCA+TGG | 0.568094 | tig0024176:-32045 | None:intergenic |
| TATGTGGAACAATATTAGGA+GGG | 0.569490 | tig0024176:-32839 | None:intergenic |
| TCATTATATTGCTGGAGCAG+TGG | 0.572054 | tig0024176:+33135 | Msa1415160:three_prime_UTR |
| ATATGTGGAACAATATTAGG+AGG | 0.574988 | tig0024176:-32840 | None:intergenic |
| TTCCATCGTAAGACAAAAGG+AGG | 0.577863 | tig0024176:-30876 | None:intergenic |
| ATTTCTTATCGTGTGAGGAA+GGG | 0.578271 | tig0024176:+30524 | Msa1415160:five_prime_UTR |
| AGAGTTCACGCTGCTTTGAA+CGG | 0.578649 | tig0024176:+32191 | Msa1415160:CDS |
| CGTGGAATTCAGCTGATGCA+GGG | 0.588035 | tig0024176:-32250 | None:intergenic |
| TCTCTAACTCGTATATCAGA+AGG | 0.591774 | tig0024176:-32221 | None:intergenic |
| GATCTGGTACGCGATCATTG+TGG | 0.593882 | tig0024176:-32451 | None:intergenic |
| AGGAAGGATCTCCAGTTGGT+TGG | 0.596611 | tig0024176:+31998 | Msa1415160:CDS |
| GCGCTGGAACGGGTCCATGA+TGG | 0.598181 | tig0024176:-32324 | None:intergenic |
| TGCTATTATCTGCCACCACA+TGG | 0.601083 | tig0024176:+32900 | Msa1415160:CDS |
| GAATTCTTCAAGTGATGTTG+TGG | 0.605338 | tig0024176:+30819 | Msa1415160:CDS |
| GAAGTGAAGCCCAACCAAGA+TGG | 0.606632 | tig0024176:+30841 | Msa1415160:CDS |
| ATTGTTGCTTCAGATTGGAA+AGG | 0.610327 | tig0024176:+32809 | Msa1415160:CDS |
| GATTTACAGTGATACCATCA+TGG | 0.611998 | tig0024176:+32310 | Msa1415160:CDS |
| TCATACCATAAGAAAATGCA+AGG | 0.613094 | tig0024176:+33004 | Msa1415160:CDS |
| TCAAAGGAAGGATCTCCAGT+TGG | 0.617658 | tig0024176:+31994 | Msa1415160:CDS |
| GATGCAGGAGTCCATGCTTG+GGG | 0.645475 | tig0024176:+32034 | Msa1415160:CDS |
| TACGGCGCATTGTACAGTAG+GGG | 0.655013 | tig0024176:-31942 | None:intergenic |
| ATGTGGAACAATATTAGGAG+GGG | 0.656496 | tig0024176:-32838 | None:intergenic |
| AGCAGCAGCAACAACATCAG+TGG | 0.661577 | tig0024176:+30675 | Msa1415160:CDS |
| GTATAGACAAGTCCGAAACA+TGG | 0.664436 | tig0024176:+32701 | Msa1415160:CDS |
| ACGGCGCATTGTACAGTAGG+GGG | 0.692690 | tig0024176:-31941 | None:intergenic |
| GAAACAAGACAAAGACCATG+TGG | 0.703286 | tig0024176:-32915 | None:intergenic |
| ACAAGACAAAGACCATGTGG+TGG | 0.708267 | tig0024176:-32912 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAAAAAACTTGAT+GGG | - | tig0024176:30565-30584 | None:intergenic | 10.0% |
| !! | AATAAAAATAAAAAACTTGA+TGG | - | tig0024176:30566-30585 | None:intergenic | 10.0% |
| !!! | GTCTAAAATTTAAATATTAA+TGG | + | tig0024176:33065-33084 | Msa1415160:three_prime_UTR | 10.0% |
| !! | AACTAAAATAAGTATAGTAT+AGG | + | tig0024176:31018-31037 | Msa1415160:intron | 15.0% |
| !! | CCAAATATAAAAATCTAATA+TGG | - | tig0024176:31166-31185 | None:intergenic | 15.0% |
| !!! | CCATATTAGATTTTTATATT+TGG | + | tig0024176:31163-31182 | Msa1415160:intron | 15.0% |
| !! | CCTAATATAAAAATCTAATA+CGG | - | tig0024176:31333-31352 | None:intergenic | 15.0% |
| !! | TATTGAGTTTATACATATTA+TGG | - | tig0024176:32361-32380 | None:intergenic | 15.0% |
| !!! | CAACAATAACTTTTTTAATT+TGG | - | tig0024176:32743-32762 | None:intergenic | 15.0% |
| !!! | CCGTATTAGATTTTTATATT+AGG | + | tig0024176:31330-31349 | Msa1415160:intron | 20.0% |
| !!! | TGTTTTTATTCATTAAATGC+TGG | - | tig0024176:31842-31861 | None:intergenic | 20.0% |
| !!! | TCTAATTAAAGCTTTTTCTA+CGG | - | tig0024176:31963-31982 | None:intergenic | 20.0% |
| !! | TTTCAAAAAATAAACCAAGA+AGG | - | tig0024176:32596-32615 | None:intergenic | 20.0% |
| !! | AAAATATGTGGAACAATATT+AGG | - | tig0024176:32846-32865 | None:intergenic | 20.0% |
| !!! | TAATATTGTTCCACATATTT+TGG | + | tig0024176:32845-32864 | Msa1415160:CDS | 20.0% |
| !! | TGTATTCTAATGATAATACT+AGG | + | tig0024176:33028-33047 | Msa1415160:exon | 20.0% |
| ! | ACAATAGAATTGAATAAGTG+TGG | + | tig0024176:30589-30608 | Msa1415160:intron | 25.0% |
| ! | ATTCATACATACAGAAAGAA+GGG | - | tig0024176:30725-30744 | None:intergenic | 25.0% |
| ! | AAGTTTCGGATAAAAAAGAT+AGG | - | tig0024176:31426-31445 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTATCCGAAACTT+AGG | + | tig0024176:31426-31445 | Msa1415160:intron | 25.0% |
| ! | TGCAATATGCAAGTAATATT+GGG | - | tig0024176:31458-31477 | None:intergenic | 25.0% |
| ! | ATGCAATATGCAAGTAATAT+TGG | - | tig0024176:31459-31478 | None:intergenic | 25.0% |
| !!! | ACTTGGATTTGGTATTTTTA+AGG | - | tig0024176:31698-31717 | None:intergenic | 25.0% |
| ! | TAAAAATACCAAATCCAAGT+TGG | + | tig0024176:31698-31717 | Msa1415160:intron | 25.0% |
| !!! | TTTTTCTCCATTATTTTGAC+TGG | + | tig0024176:31885-31904 | Msa1415160:intron | 25.0% |
| ! | TTATAACTTATTGTGACTGT+AGG | + | tig0024176:32127-32146 | Msa1415160:intron | 25.0% |
| ! | TCCAAATTGTCGTAATTAAA+CGG | - | tig0024176:32170-32189 | None:intergenic | 25.0% |
| ! | ACATATTATGGTAAGCAAAA+TGG | - | tig0024176:32349-32368 | None:intergenic | 25.0% |
| !! | AAGCTGCAAGATATTTTATT+GGG | + | tig0024176:32396-32415 | Msa1415160:CDS | 25.0% |
| !! | ATATATCTGTTTGCATTTTC+AGG | + | tig0024176:32782-32801 | Msa1415160:intron | 25.0% |
| ! | CTTCATAATCATTATATTGC+TGG | + | tig0024176:33127-33146 | Msa1415160:three_prime_UTR | 25.0% |
| !! | AAAAGCTAAACTCCTATTTT+AGG | - | tig0024176:33163-33182 | None:intergenic | 25.0% |
| !!! | AAAATAGGAGTTTAGCTTTT+AGG | + | tig0024176:33163-33182 | Msa1415160:three_prime_UTR | 25.0% |
| !!! | AAATAGGAGTTTAGCTTTTA+GGG | + | tig0024176:33164-33183 | Msa1415160:three_prime_UTR | 25.0% |
| !! | GTGATCATTGAACTAAATTT+TGG | - | tig0024176:33245-33264 | None:intergenic | 25.0% |
| AGAAGAAGAAGAAGAAGAAT+AGG | + | tig0024176:30631-30650 | Msa1415160:five_prime_UTR | 30.0% | |
| CATTCATACATACAGAAAGA+AGG | - | tig0024176:30726-30745 | None:intergenic | 30.0% | |
| GAAGAGAAAGAGAAAAAAGA+GGG | - | tig0024176:30759-30778 | None:intergenic | 30.0% | |
| AGAAGAGAAAGAGAAAAAAG+AGG | - | tig0024176:30760-30779 | None:intergenic | 30.0% | |
| GAATGAATGAAAAGAGAAGA+AGG | - | tig0024176:30928-30947 | None:intergenic | 30.0% | |
| ATAGTATAGGCTCTTAATGT+TGG | + | tig0024176:31031-31050 | Msa1415160:intron | 30.0% | |
| CACTCTTTATGAACTCTTAT+TGG | + | tig0024176:31228-31247 | Msa1415160:intron | 30.0% | |
| TGGTGCATGTATATAAATAG+TGG | + | tig0024176:31282-31301 | Msa1415160:intron | 30.0% | |
| GGTGCATGTATATAAATAGT+GGG | + | tig0024176:31283-31302 | Msa1415160:intron | 30.0% | |
| AAAATCTAATACGGTATCTG+AGG | - | tig0024176:31324-31343 | None:intergenic | 30.0% | |
| TTGGGAAAAAACCTAAGTTT+CGG | - | tig0024176:31440-31459 | None:intergenic | 30.0% | |
| GCATTTCTCTCAAAGTAAAT+AGG | - | tig0024176:31557-31576 | None:intergenic | 30.0% | |
| !! | AAAATGGTGTCACAAACTTA+AGG | - | tig0024176:31626-31645 | None:intergenic | 30.0% |
| !! | ATTTTGAGCTTTATCCAACT+TGG | - | tig0024176:31715-31734 | None:intergenic | 30.0% |
| !! | GGGATTTGGTATTCTTTTTA+TGG | - | tig0024176:31781-31800 | None:intergenic | 30.0% |
| GAAAACTACACCTTTCTATA+TGG | - | tig0024176:31820-31839 | None:intergenic | 30.0% | |
| ACCGTTTAATTACGACAATT+TGG | + | tig0024176:32166-32185 | Msa1415160:CDS | 30.0% | |
| ! | GAAGCTGCAAGATATTTTAT+TGG | + | tig0024176:32395-32414 | Msa1415160:CDS | 30.0% |
| CCATTTCTTTCACATCAAAT+CGG | - | tig0024176:32493-32512 | None:intergenic | 30.0% | |
| TAATAATGTTCACAGCAGTA+CGG | - | tig0024176:32543-32562 | None:intergenic | 30.0% | |
| TTACCATGTTTATACCTTCT+TGG | + | tig0024176:32579-32598 | Msa1415160:intron | 30.0% | |
| ! | AAACCAAGAAGGTATAAACA+TGG | - | tig0024176:32585-32604 | None:intergenic | 30.0% |
| GAAGATTGAATACCATGTTT+CGG | - | tig0024176:32716-32735 | None:intergenic | 30.0% | |
| TATGTGGAACAATATTAGGA+GGG | - | tig0024176:32842-32861 | None:intergenic | 30.0% | |
| ATATGTGGAACAATATTAGG+AGG | - | tig0024176:32843-32862 | None:intergenic | 30.0% | |
| TCATACCATAAGAAAATGCA+AGG | + | tig0024176:33004-33023 | Msa1415160:CDS | 30.0% | |
| ! | TACAACCTTGCATTTTCTTA+TGG | - | tig0024176:33012-33031 | None:intergenic | 30.0% |
| AATTTCTTATCGTGTGAGGA+AGG | + | tig0024176:30523-30542 | Msa1415160:five_prime_UTR | 35.0% | |
| ATTTCTTATCGTGTGAGGAA+GGG | + | tig0024176:30524-30543 | Msa1415160:five_prime_UTR | 35.0% | |
| AATAGGCAGTGAAATGAGTT+GGG | + | tig0024176:30648-30667 | Msa1415160:exon | 35.0% | |
| GAATTCTTCAAGTGATGTTG+TGG | + | tig0024176:30819-30838 | Msa1415160:CDS | 35.0% | |
| TGATATGATTGCCTGCATAA+CGG | - | tig0024176:30903-30922 | None:intergenic | 35.0% | |
| AATCTCACGTTCAATGCTAT+TGG | + | tig0024176:31256-31275 | Msa1415160:intron | 35.0% | |
| ATCTCACGTTCAATGCTATT+GGG | + | tig0024176:31257-31276 | Msa1415160:intron | 35.0% | |
| CTTTACGAAAACGACTTGTA+AGG | + | tig0024176:31363-31382 | Msa1415160:intron | 35.0% | |
| GAAAACGACTTGTAAGGTAA+GGG | + | tig0024176:31369-31388 | Msa1415160:intron | 35.0% | |
| AAAACGACTTGTAAGGTAAG+GGG | + | tig0024176:31370-31389 | Msa1415160:intron | 35.0% | |
| TCTCAAACATTGTAACCATG+AGG | + | tig0024176:31507-31526 | Msa1415160:intron | 35.0% | |
| !! | TTTGTGACACCATTTTTGTG+AGG | + | tig0024176:31630-31649 | Msa1415160:intron | 35.0% |
| ! | AGCTTTATCCAACTTGGATT+TGG | - | tig0024176:31709-31728 | None:intergenic | 35.0% |
| ! | TGAATGAAGTTTTCAGCTTG+AGG | + | tig0024176:31745-31764 | Msa1415160:intron | 35.0% |
| GACTCTTGATCCATATAGAA+AGG | + | tig0024176:31807-31826 | Msa1415160:intron | 35.0% | |
| ACAGTCACCAGTCAAAATAA+TGG | - | tig0024176:31895-31914 | None:intergenic | 35.0% | |
| TTAGAGCAACAAAGCTTCAA+AGG | + | tig0024176:31978-31997 | Msa1415160:CDS | 35.0% | |
| TCTCTAACTCGTATATCAGA+AGG | - | tig0024176:32224-32243 | None:intergenic | 35.0% | |
| GATTTACAGTGATACCATCA+TGG | + | tig0024176:32310-32329 | Msa1415160:CDS | 35.0% | |
| AAAATATGCTTCACTGGATC+TGG | - | tig0024176:32470-32489 | None:intergenic | 35.0% | |
| AATCGGAAAATATGCTTCAC+TGG | - | tig0024176:32476-32495 | None:intergenic | 35.0% | |
| ! | CCGATTTGATGTGAAAGAAA+TGG | + | tig0024176:32490-32509 | Msa1415160:CDS | 35.0% |
| ! | ATTGTTGCTTCAGATTGGAA+AGG | + | tig0024176:32809-32828 | Msa1415160:CDS | 35.0% |
| ATGTGGAACAATATTAGGAG+GGG | - | tig0024176:32841-32860 | None:intergenic | 35.0% | |
| ! | GCTGTTTCAGAGATGTAATT+GGG | + | tig0024176:33186-33205 | Msa1415160:three_prime_UTR | 35.0% |
| GAATAGGCAGTGAAATGAGT+TGG | + | tig0024176:30647-30666 | Msa1415160:exon | 40.0% | |
| CATACAGAAAGAAGGGAAGT+TGG | - | tig0024176:30718-30737 | None:intergenic | 40.0% | |
| CACTTATAGCCATCTTGGTT+GGG | - | tig0024176:30853-30872 | None:intergenic | 40.0% | |
| TTCCATCGTAAGACAAAAGG+AGG | - | tig0024176:30879-30898 | None:intergenic | 40.0% | |
| GATATGATTGCCTGCATAAC+GGG | - | tig0024176:30902-30921 | None:intergenic | 40.0% | |
| GTTGGAGATACTCACTTGTA+AGG | + | tig0024176:31049-31068 | Msa1415160:intron | 40.0% | |
| TCTTATCGCTTCAACACCAT+TGG | + | tig0024176:31089-31108 | Msa1415160:intron | 40.0% | |
| !! | ACTTGGTGCGTGTGTATAAA+CGG | + | tig0024176:31112-31131 | Msa1415160:intron | 40.0% |
| TGGTATTCGAGCTTACCAAT+CGG | - | tig0024176:31146-31165 | None:intergenic | 40.0% | |
| CGAAAACGACTTGTAAGGTA+AGG | + | tig0024176:31368-31387 | Msa1415160:intron | 40.0% | |
| TGATACGAATCAGAACCTCA+TGG | - | tig0024176:31525-31544 | None:intergenic | 40.0% | |
| !! | TGGTGTCACAAACTTAAGGT+TGG | - | tig0024176:31622-31641 | None:intergenic | 40.0% |
| CAGACAATGCCTCACAAAAA+TGG | - | tig0024176:31642-31661 | None:intergenic | 40.0% | |
| ATGGATCAAGAGTCAAAGCA+GGG | - | tig0024176:31801-31820 | None:intergenic | 40.0% | |
| TATGGATCAAGAGTCAAAGC+AGG | - | tig0024176:31802-31821 | None:intergenic | 40.0% | |
| ! | TTTGACTGGTGACTGTTTTC+AGG | + | tig0024176:31899-31918 | Msa1415160:intron | 40.0% |
| AGCAACAAAGCTTCAAAGGA+AGG | + | tig0024176:31982-32001 | Msa1415160:CDS | 40.0% | |
| AAGCTGAAATTGCGCACAAA+AGG | - | tig0024176:32080-32099 | None:intergenic | 40.0% | |
| ! | AGCTTTCAAGTGGCAAACAT+TGG | + | tig0024176:32095-32114 | Msa1415160:intron | 40.0% |
| TCACGTCAATATCAATGTGC+AGG | + | tig0024176:32638-32657 | Msa1415160:intron | 40.0% | |
| CACGTCAATATCAATGTGCA+GGG | + | tig0024176:32639-32658 | Msa1415160:intron | 40.0% | |
| ! | CTTTTGCAGCTAGAAGTTGA+AGG | + | tig0024176:32666-32685 | Msa1415160:CDS | 40.0% |
| GTATAGACAAGTCCGAAACA+TGG | + | tig0024176:32701-32720 | Msa1415160:CDS | 40.0% | |
| TCACGACTCTCCAAAATATG+TGG | - | tig0024176:32858-32877 | None:intergenic | 40.0% | |
| GAAACAAGACAAAGACCATG+TGG | - | tig0024176:32918-32937 | None:intergenic | 40.0% | |
| TCATTATATTGCTGGAGCAG+TGG | + | tig0024176:33135-33154 | Msa1415160:three_prime_UTR | 40.0% | |
| ! | GGCTGTTTCAGAGATGTAAT+TGG | + | tig0024176:33185-33204 | Msa1415160:three_prime_UTR | 40.0% |
| AGGGAAGTTGGAGATGGAAT+CGG | - | tig0024176:30706-30725 | None:intergenic | 45.0% | |
| GAAAGAAGGGAAGTTGGAGA+TGG | - | tig0024176:30712-30731 | None:intergenic | 45.0% | |
| CCACTTATAGCCATCTTGGT+TGG | - | tig0024176:30854-30873 | None:intergenic | 45.0% | |
| CCAACCAAGATGGCTATAAG+TGG | + | tig0024176:30851-30870 | Msa1415160:CDS | 45.0% | |
| GGGTTCCATCGTAAGACAAA+AGG | - | tig0024176:30882-30901 | None:intergenic | 45.0% | |
| TCACTTGTAAGGTGAGAGAG+AGG | + | tig0024176:31060-31079 | Msa1415160:intron | 45.0% | |
| GGTATTCGAGCTTACCAATC+GGG | - | tig0024176:31145-31164 | None:intergenic | 45.0% | |
| !! | CGGTTTTGTAAGGACGAGTT+TGG | - | tig0024176:31189-31208 | None:intergenic | 45.0% |
| !! | AGTCACAGGACGGTTTTGTA+AGG | - | tig0024176:31199-31218 | None:intergenic | 45.0% |
| AAAACCGTCCTGTGACTTGA+GGG | + | tig0024176:31202-31221 | Msa1415160:intron | 45.0% | |
| ACGTTCAATGCTATTGGGCT+TGG | + | tig0024176:31262-31281 | Msa1415160:intron | 45.0% | |
| CAAGAGTCAAAGCAGGGATT+TGG | - | tig0024176:31795-31814 | None:intergenic | 45.0% | |
| !! | GTTTTCAGGCTGGCAATATC+AGG | + | tig0024176:31913-31932 | Msa1415160:intron | 45.0% |
| TCAAAGGAAGGATCTCCAGT+TGG | + | tig0024176:31994-32013 | Msa1415160:CDS | 45.0% | |
| GCGCAATTTCAGCTTTCAAG+TGG | + | tig0024176:32085-32104 | Msa1415160:intron | 45.0% | |
| ! | AGAGTTCACGCTGCTTTGAA+CGG | + | tig0024176:32191-32210 | Msa1415160:CDS | 45.0% |
| ! | TTTTTGCAGAAAACCGAGCG+TGG | - | tig0024176:32271-32290 | None:intergenic | 45.0% |
| ! | TAAGCAAAATGGCGCTGGAA+CGG | - | tig0024176:32338-32357 | None:intergenic | 45.0% |
| TATGGTAAGCAAAATGGCGC+TGG | - | tig0024176:32343-32362 | None:intergenic | 45.0% | |
| ATCTGGTACGCGATCATTGT+GGG | - | tig0024176:32453-32472 | None:intergenic | 45.0% | |
| ! | GTCGCATTGTTGCTTCAGAT+TGG | + | tig0024176:32804-32823 | Msa1415160:CDS | 45.0% |
| TGCTATTATCTGCCACCACA+TGG | + | tig0024176:32900-32919 | Msa1415160:CDS | 45.0% | |
| ACAAGACAAAGACCATGTGG+TGG | - | tig0024176:32915-32934 | None:intergenic | 45.0% | |
| ! | GCATGCCAGAACTTTTTGCA+GGG | - | tig0024176:32983-33002 | None:intergenic | 45.0% |
| ! | TGCATGCCAGAACTTTTTGC+AGG | - | tig0024176:32984-33003 | None:intergenic | 45.0% |
| AGCAGCAGCAACAACATCAG+TGG | + | tig0024176:30675-30694 | Msa1415160:CDS | 50.0% | |
| GAAGTGAAGCCCAACCAAGA+TGG | + | tig0024176:30841-30860 | Msa1415160:CDS | 50.0% | |
| ! | CGCCTCCTTTTGTCTTACGA+TGG | + | tig0024176:30874-30893 | Msa1415160:CDS | 50.0% |
| TACGATGGAACCCGTTATGC+AGG | + | tig0024176:30889-30908 | Msa1415160:CDS | 50.0% | |
| CGCTTCAACACCATTGGACT+TGG | + | tig0024176:31095-31114 | Msa1415160:intron | 50.0% | |
| TACACACGCACCAAGTCCAA+TGG | - | tig0024176:31108-31127 | None:intergenic | 50.0% | |
| GGTGCGTGTGTATAAACGGT+TGG | + | tig0024176:31116-31135 | Msa1415160:intron | 50.0% | |
| GCGTGTGTATAAACGGTTGG+TGG | + | tig0024176:31119-31138 | Msa1415160:intron | 50.0% | |
| CAAAACCGTCCTGTGACTTG+AGG | + | tig0024176:31201-31220 | Msa1415160:intron | 50.0% | |
| ! | GGTATCTGAGGCTATCGATC+GGG | - | tig0024176:31312-31331 | None:intergenic | 50.0% |
| ! | CGGTATCTGAGGCTATCGAT+CGG | - | tig0024176:31313-31332 | None:intergenic | 50.0% |
| !! | ACTGGTGACTGTTTTCAGGC+TGG | + | tig0024176:31903-31922 | Msa1415160:intron | 50.0% |
| TACGGCGCATTGTACAGTAG+GGG | - | tig0024176:31945-31964 | None:intergenic | 50.0% | |
| CTACGGCGCATTGTACAGTA+GGG | - | tig0024176:31946-31965 | None:intergenic | 50.0% | |
| TCTACGGCGCATTGTACAGT+AGG | - | tig0024176:31947-31966 | None:intergenic | 50.0% | |
| AGGAAGGATCTCCAGTTGGT+TGG | + | tig0024176:31998-32017 | Msa1415160:CDS | 50.0% | |
| TGATGCAGGAGTCCATGCTT+GGG | + | tig0024176:32033-32052 | Msa1415160:CDS | 50.0% | |
| CGTGGAATTCAGCTGATGCA+GGG | - | tig0024176:32253-32272 | None:intergenic | 50.0% | |
| CATCAGCTGAATTCCACGCT+CGG | + | tig0024176:32255-32274 | Msa1415160:CDS | 50.0% | |
| ! | AAGCAAAATGGCGCTGGAAC+GGG | - | tig0024176:32337-32356 | None:intergenic | 50.0% |
| GATCTGGTACGCGATCATTG+TGG | - | tig0024176:32454-32473 | None:intergenic | 50.0% | |
| GCAGCTAGAAGTTGAAGGCT+CGG | + | tig0024176:32671-32690 | Msa1415160:CDS | 50.0% | |
| CAGCTAGAAGTTGAAGGCTC+GGG | + | tig0024176:32672-32691 | Msa1415160:CDS | 50.0% | |
| TTTGGAGAGTCGTGATCGCA+AGG | + | tig0024176:32863-32882 | Msa1415160:CDS | 50.0% | |
| ! | GAACTTTTTGCAGGGCAACC+TGG | - | tig0024176:32975-32994 | None:intergenic | 50.0% |
| GGTTGCCCTGCAAAAAGTTC+TGG | + | tig0024176:32975-32994 | Msa1415160:CDS | 50.0% | |
| GGAGCAGTGGAGCCTAAAAT+AGG | + | tig0024176:33148-33167 | Msa1415160:three_prime_UTR | 50.0% | |
| GGCGCCACTTATAGCCATCT+TGG | - | tig0024176:30858-30877 | None:intergenic | 55.0% | |
| !! | TAAACGGTTGGTGGCCCGAT+TGG | + | tig0024176:31128-31147 | Msa1415160:intron | 55.0% |
| GACACCCTCAAGTCACAGGA+CGG | - | tig0024176:31209-31228 | None:intergenic | 55.0% | |
| GAGTGACACCCTCAAGTCAC+AGG | - | tig0024176:31213-31232 | None:intergenic | 55.0% | |
| ACGGCGCATTGTACAGTAGG+GGG | - | tig0024176:31944-31963 | None:intergenic | 55.0% | |
| ! | TCCAGTTGGTTGGTGCAAGC+AGG | + | tig0024176:32008-32027 | Msa1415160:CDS | 55.0% |
| TCCTGCTTGCACCAACCAAC+TGG | - | tig0024176:32012-32031 | None:intergenic | 55.0% | |
| CTGATGCAGGAGTCCATGCT+TGG | + | tig0024176:32032-32051 | Msa1415160:CDS | 55.0% | |
| GATGCAGGAGTCCATGCTTG+GGG | + | tig0024176:32034-32053 | Msa1415160:CDS | 55.0% | |
| ATCTGACCTGACCCCAAGCA+TGG | - | tig0024176:32048-32067 | None:intergenic | 55.0% | |
| GCGTGGAATTCAGCTGATGC+AGG | - | tig0024176:32254-32273 | None:intergenic | 55.0% | |
| ! | AGTCACTTGTTGCCTCCACC+AGG | + | tig0024176:32954-32973 | Msa1415160:CDS | 55.0% |
| ! | CTTTTTGCAGGGCAACCTGG+TGG | - | tig0024176:32972-32991 | None:intergenic | 55.0% |
| GGTGCAAGCAGGACTGATGC+AGG | + | tig0024176:32019-32038 | Msa1415160:CDS | 60.0% | |
| AGGAGTCCATGCTTGGGGTC+AGG | + | tig0024176:32039-32058 | Msa1415160:CDS | 60.0% | |
| TTTGCAGGGCAACCTGGTGG+AGG | - | tig0024176:32969-32988 | None:intergenic | 60.0% | |
| GCGCTGGAACGGGTCCATGA+TGG | - | tig0024176:32327-32346 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024176 | gene | 30520 | 33264 | 30520 | ID=Msa1415160;Name=Msa1415160 |
| tig0024176 | mRNA | 30520 | 33264 | 30520 | ID=Msa1415160-mRNA-1;Parent=Msa1415160;Name=Msa1415160-mRNA-1;_AED=0.23;_eAED=0.23;_QI=118|0.83|0.85|1|0.83|0.71|7|227|340 |
| tig0024176 | exon | 30520 | 30597 | 30520 | ID=Msa1415160-mRNA-1:exon:22190;Parent=Msa1415160-mRNA-1 |
| tig0024176 | exon | 30621 | 30732 | 30621 | ID=Msa1415160-mRNA-1:exon:22191;Parent=Msa1415160-mRNA-1 |
| tig0024176 | exon | 30817 | 30967 | 30817 | ID=Msa1415160-mRNA-1:exon:22192;Parent=Msa1415160-mRNA-1 |
| tig0024176 | exon | 31921 | 32060 | 31921 | ID=Msa1415160-mRNA-1:exon:22193;Parent=Msa1415160-mRNA-1 |
| tig0024176 | exon | 32149 | 32511 | 32149 | ID=Msa1415160-mRNA-1:exon:22194;Parent=Msa1415160-mRNA-1 |
| tig0024176 | exon | 32660 | 32722 | 32660 | ID=Msa1415160-mRNA-1:exon:22195;Parent=Msa1415160-mRNA-1 |
| tig0024176 | exon | 32804 | 33264 | 32804 | ID=Msa1415160-mRNA-1:exon:22196;Parent=Msa1415160-mRNA-1 |
| tig0024176 | five_prime_UTR | 30520 | 30597 | 30520 | ID=Msa1415160-mRNA-1:five_prime_utr;Parent=Msa1415160-mRNA-1 |
| tig0024176 | five_prime_UTR | 30621 | 30660 | 30621 | ID=Msa1415160-mRNA-1:five_prime_utr;Parent=Msa1415160-mRNA-1 |
| tig0024176 | CDS | 30661 | 30732 | 30661 | ID=Msa1415160-mRNA-1:cds;Parent=Msa1415160-mRNA-1 |
| tig0024176 | CDS | 30817 | 30967 | 30817 | ID=Msa1415160-mRNA-1:cds;Parent=Msa1415160-mRNA-1 |
| tig0024176 | CDS | 31921 | 32060 | 31921 | ID=Msa1415160-mRNA-1:cds;Parent=Msa1415160-mRNA-1 |
| tig0024176 | CDS | 32149 | 32511 | 32149 | ID=Msa1415160-mRNA-1:cds;Parent=Msa1415160-mRNA-1 |
| tig0024176 | CDS | 32660 | 32722 | 32660 | ID=Msa1415160-mRNA-1:cds;Parent=Msa1415160-mRNA-1 |
| tig0024176 | CDS | 32804 | 33037 | 32804 | ID=Msa1415160-mRNA-1:cds;Parent=Msa1415160-mRNA-1 |
| tig0024176 | three_prime_UTR | 33038 | 33264 | 33038 | ID=Msa1415160-mRNA-1:three_prime_utr;Parent=Msa1415160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
