Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409320 | XP_003609879.2 | 91.202 | 341 | 10 | 2 | 1 | 340 | 2 | 323 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409320 | sp|Q6MEE7|TRUA1_PARUW | 37.545 | 277 | 146 | 6 | 43 | 317 | 4 | 255 | 6.41e-60 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409320 | A0A396IFU3 | 91.202 | 341 | 10 | 2 | 1 | 340 | 2 | 323 | 0.0 | 636 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027030 | Msa1409320 | 0.801687 | 8.006001e-49 | -8.615850e-47 |
| Msa0029280 | Msa1409320 | 0.800850 | 1.187884e-48 | -8.615850e-47 |
| Msa0076100 | Msa1409320 | 0.821089 | 4.859342e-53 | -8.615850e-47 |
| Msa1373570 | Msa1409320 | 0.800985 | 1.114699e-48 | -8.615850e-47 |
| Msa1375980 | Msa1409320 | 0.804231 | 2.385344e-49 | -8.615850e-47 |
| Msa1376010 | Msa1409320 | 0.802653 | 5.065065e-49 | -8.615850e-47 |
| Msa1409320 | Msa1415160 | 0.891465 | 3.875422e-74 | -8.615850e-47 |
| Msa1409320 | Msa1418840 | 0.806181 | 9.319046e-50 | -8.615850e-47 |
| Msa1409320 | Msa1436660 | 0.803144 | 4.010165e-49 | -8.615850e-47 |
| Msa0628440 | Msa1409320 | 0.804210 | 2.409951e-49 | -8.615850e-47 |
| Msa0662670 | Msa1409320 | 0.805034 | 1.622322e-49 | -8.615850e-47 |
| Msa0708870 | Msa1409320 | 0.801930 | 7.135790e-49 | -8.615850e-47 |
| Msa0133390 | Msa1409320 | 0.819634 | 1.047527e-52 | -8.615850e-47 |
| Msa0181560 | Msa1409320 | 0.810879 | 9.256133e-51 | -8.615850e-47 |
| Msa0184800 | Msa1409320 | 0.818526 | 1.872041e-52 | -8.615850e-47 |
| Msa0184900 | Msa1409320 | 0.809239 | 2.087717e-50 | -8.615850e-47 |
| Msa0199160 | Msa1409320 | 0.809820 | 1.566034e-50 | -8.615850e-47 |
| Msa1225140 | Msa1409320 | 0.802986 | 4.324348e-49 | -8.615850e-47 |
| Msa1266820 | Msa1409320 | 0.917412 | 5.477339e-86 | -8.615850e-47 |
| Msa1342110 | Msa1409320 | 0.800657 | 1.300467e-48 | -8.615850e-47 |
| Msa0450230 | Msa1409320 | 0.801351 | 9.380191e-49 | -8.615850e-47 |
| Msa1056790 | Msa1409320 | 0.802069 | 6.682934e-49 | -8.615850e-47 |
| Msa1128230 | Msa1409320 | 0.803884 | 2.817393e-49 | -8.615850e-47 |
| Msa1143860 | Msa1409320 | 0.801621 | 8.258363e-49 | -8.615850e-47 |
| Msa1191960 | Msa1409320 | 0.819651 | 1.038223e-52 | -8.615850e-47 |
| Msa1219480 | Msa1409320 | 0.911576 | 5.200716e-83 | -8.615850e-47 |
| Msa1219490 | Msa1409320 | 0.943561 | 9.638724e-103 | -8.615850e-47 |
| Msa0528830 | Msa1409320 | 0.819607 | 1.062895e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409320 | MtrunA17_Chr4g0069331 | 91.202 | 341 | 10 | 2 | 1 | 340 | 2 | 323 | 0.0 | 636 |
| Msa1409320 | MtrunA17_Chr1g0201101 | 28.425 | 292 | 153 | 12 | 23 | 286 | 67 | 330 | 1.48e-16 | 80.1 |
| Msa1409320 | MtrunA17_Chr2g0277101 | 25.854 | 205 | 108 | 6 | 42 | 228 | 43 | 221 | 1.73e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409320 | AT3G06950.1 | 64.110 | 326 | 91 | 4 | 17 | 340 | 21 | 322 | 7.71e-148 | 419 |
| Msa1409320 | AT1G34150.1 | 30.736 | 231 | 116 | 8 | 83 | 287 | 114 | 326 | 8.95e-16 | 78.6 |
Find 87 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATTGTTCCACATATTT+TGG | 0.121197 | tig0023518:-48621 | Msa1409320:CDS |
| GTGATCATTGAACTAAATTT+TGG | 0.137694 | tig0023518:+48224 | None:intergenic |
| GTCTAAAATTTAAATATTAA+TGG | 0.143383 | tig0023518:-48401 | Msa1409320:three_prime_UTR |
| TATTGAGTTTATACATATTA+TGG | 0.228707 | tig0023518:+49108 | None:intergenic |
| ACCGTTTAATTACGACAATT+TGG | 0.242990 | tig0023518:-49300 | Msa1409320:CDS |
| AAAATATGTGGAACAATATT+AGG | 0.254864 | tig0023518:+48623 | None:intergenic |
| GGCTGTTTCAGAGATGTAAT+TGG | 0.268432 | tig0023518:-48281 | Msa1409320:three_prime_UTR |
| ACATATTATGGTAAGCAAAA+TGG | 0.289437 | tig0023518:+49120 | None:intergenic |
| CACTTATAGCCATCTTGGTT+GGG | 0.298483 | tig0023518:+50620 | None:intergenic |
| CTTCATAATCATTATATTGC+TGG | 0.339093 | tig0023518:-48339 | Msa1409320:three_prime_UTR |
| TGTGGATAAAGAAGAAGAAT+AGG | 0.372393 | tig0023518:-50845 | Msa1409320:five_prime_UTR |
| CCGATTTGATGTGAAAGAAA+TGG | 0.378687 | tig0023518:-48976 | Msa1409320:intron |
| GGAGCAGTGGAGCCTAAAAT+AGG | 0.386174 | tig0023518:-48318 | Msa1409320:three_prime_UTR |
| TCCTGCTTGCACCAACCAAC+TGG | 0.392400 | tig0023518:+49457 | None:intergenic |
| TCCAAATTGTCGTAATTAAA+CGG | 0.394286 | tig0023518:+49299 | None:intergenic |
| GATATGATTGCCTGCATAAC+GGG | 0.394519 | tig0023518:+50571 | None:intergenic |
| TGATGCAGGAGTCCATGCTT+GGG | 0.401400 | tig0023518:-49433 | Msa1409320:CDS |
| GTCGCATTGTTGCTTCAGAT+TGG | 0.418270 | tig0023518:-48662 | Msa1409320:CDS |
| AAAATATGCTTCACTGGATC+TGG | 0.422038 | tig0023518:+48999 | None:intergenic |
| CCACTTATAGCCATCTTGGT+TGG | 0.431380 | tig0023518:+50619 | None:intergenic |
| GAAGATTGAATACCATGTTT+CGG | 0.438346 | tig0023518:+48753 | None:intergenic |
| ATCTGGTACGCGATCATTGT+GGG | 0.445378 | tig0023518:+49016 | None:intergenic |
| GCTGTTTCAGAGATGTAATT+GGG | 0.445502 | tig0023518:-48280 | Msa1409320:three_prime_UTR |
| AAGCAAAATGGCGCTGGAAC+GGG | 0.448936 | tig0023518:+49132 | None:intergenic |
| AGGGAAGTTGGAGATGGAAT+CGG | 0.449511 | tig0023518:+50773 | None:intergenic |
| GCGTGGAATTCAGCTGATGC+AGG | 0.451298 | tig0023518:+49215 | None:intergenic |
| CCATTTCTTTCACATCAAAT+CGG | 0.454616 | tig0023518:+48976 | None:intergenic |
| GGCGCCACTTATAGCCATCT+TGG | 0.459785 | tig0023518:+50615 | None:intergenic |
| CTGATGCAGGAGTCCATGCT+TGG | 0.463793 | tig0023518:-49434 | Msa1409320:CDS |
| AATCGGAAAATATGCTTCAC+TGG | 0.470992 | tig0023518:+48993 | None:intergenic |
| AGGAGTCCATGCTTGGGGTC+AGG | 0.479875 | tig0023518:-49427 | Msa1409320:intron |
| TCCAGTTGGTTGGTGCAAGC+AGG | 0.481534 | tig0023518:-49458 | Msa1409320:CDS |
| TACGATGGAACCCGTTATGC+AGG | 0.483247 | tig0023518:-50581 | Msa1409320:CDS |
| AATTTGTTATCGTGTGAGGA+AGG | 0.488875 | tig0023518:-50929 | Msa1409320:five_prime_UTR |
| CATACAGAAAGAAGGGAAGT+TGG | 0.491033 | tig0023518:+50761 | None:intergenic |
| ACAATAGAATTGAATAAGTG+TGG | 0.492623 | tig0023518:-50863 | Msa1409320:five_prime_UTR |
| CAGCTAGAAGTTGAAGGCTC+GGG | 0.495832 | tig0023518:-48794 | Msa1409320:CDS |
| GAATAGGCAGTGAAATGAGT+TGG | 0.498812 | tig0023518:-50829 | Msa1409320:exon |
| CATTCATACATACAGAAAGA+AGG | 0.507840 | tig0023518:+50753 | None:intergenic |
| GAATGAATGAAAAGAGAAGA+AGG | 0.515802 | tig0023518:+50545 | None:intergenic |
| AATAGGCAGTGAAATGAGTT+GGG | 0.520368 | tig0023518:-50828 | Msa1409320:exon |
| TATGGTAAGCAAAATGGCGC+TGG | 0.522963 | tig0023518:+49126 | None:intergenic |
| TTAGAGCAACAAAGCTTCAA+AGG | 0.523117 | tig0023518:-49488 | Msa1409320:CDS |
| GCAGCTAGAAGTTGAAGGCT+CGG | 0.527801 | tig0023518:-48795 | Msa1409320:CDS |
| GGGTTCCATCGTAAGACAAA+AGG | 0.528252 | tig0023518:+50591 | None:intergenic |
| AGTCACTTGTTGCCTCCACC+AGG | 0.529491 | tig0023518:-48512 | Msa1409320:CDS |
| TGAAAATTTGTTATCGTGTG+AGG | 0.530930 | tig0023518:-50933 | Msa1409320:five_prime_UTR |
| GGTGCAAGCAGGACTGATGC+AGG | 0.533920 | tig0023518:-49447 | Msa1409320:CDS |
| GAAAGAAGGGAAGTTGGAGA+TGG | 0.534216 | tig0023518:+50767 | None:intergenic |
| AGCAACAAAGCTTCAAAGGA+AGG | 0.536541 | tig0023518:-49484 | Msa1409320:CDS |
| TGATATGATTGCCTGCATAA+CGG | 0.539705 | tig0023518:+50570 | None:intergenic |
| TAAGCAAAATGGCGCTGGAA+CGG | 0.543419 | tig0023518:+49131 | None:intergenic |
| TGTATTCTAATGATAATACT+AGG | 0.545844 | tig0023518:-48438 | Msa1409320:exon |
| TTTGCAGGGCAACCTGGTGG+AGG | 0.546040 | tig0023518:+48500 | None:intergenic |
| CTACGGCGCATTGTACAGTA+GGG | 0.547422 | tig0023518:+49523 | None:intergenic |
| CATCAGCTGAATTCCACGCT+CGG | 0.550432 | tig0023518:-49211 | Msa1409320:CDS |
| ATTCATACATACAGAAAGAA+GGG | 0.552512 | tig0023518:+50754 | None:intergenic |
| CCAACCAAGATGGCTATAAG+TGG | 0.555642 | tig0023518:-50619 | Msa1409320:CDS |
| TTTGGAGAGTCGTGATCGCA+AGG | 0.562237 | tig0023518:-48603 | Msa1409320:CDS |
| TCACGACTCTCCAAAATATG+TGG | 0.564125 | tig0023518:+48611 | None:intergenic |
| ATTTGTTATCGTGTGAGGAA+GGG | 0.565961 | tig0023518:-50928 | Msa1409320:five_prime_UTR |
| ATCTGACCTGACCCCAAGCA+TGG | 0.568094 | tig0023518:+49421 | None:intergenic |
| TATGTGGAACAATATTAGGA+GGG | 0.569490 | tig0023518:+48627 | None:intergenic |
| TCATTATATTGCTGGAGCAG+TGG | 0.572054 | tig0023518:-48331 | Msa1409320:three_prime_UTR |
| ATATGTGGAACAATATTAGG+AGG | 0.574988 | tig0023518:+48626 | None:intergenic |
| TTCCATCGTAAGACAAAAGG+AGG | 0.577863 | tig0023518:+50594 | None:intergenic |
| AGAGTTCACGCTGCTTTGAA+CGG | 0.578649 | tig0023518:-49275 | Msa1409320:CDS |
| CGTGGAATTCAGCTGATGCA+GGG | 0.588035 | tig0023518:+49216 | None:intergenic |
| TCTCTAACTCGTATATCAGA+AGG | 0.591774 | tig0023518:+49245 | None:intergenic |
| GATCTGGTACGCGATCATTG+TGG | 0.593882 | tig0023518:+49015 | None:intergenic |
| AGGAAGGATCTCCAGTTGGT+TGG | 0.596611 | tig0023518:-49468 | Msa1409320:CDS |
| GCGCTGGAACGGGTCCATGA+TGG | 0.598181 | tig0023518:+49142 | None:intergenic |
| TGCTATTATCTGCCACCACA+TGG | 0.601083 | tig0023518:-48566 | Msa1409320:CDS |
| GAATTCTTCAAGTGATGTTG+TGG | 0.605338 | tig0023518:-50651 | Msa1409320:CDS |
| GAAGTGAAGCCCAACCAAGA+TGG | 0.606632 | tig0023518:-50629 | Msa1409320:CDS |
| ATTGTTGCTTCAGATTGGAA+AGG | 0.610327 | tig0023518:-48657 | Msa1409320:CDS |
| GATTTACAGTGATACCATCA+TGG | 0.611998 | tig0023518:-49156 | Msa1409320:CDS |
| TCATACCATAAGAAAATGCA+AGG | 0.613094 | tig0023518:-48462 | Msa1409320:CDS |
| TCAAAGGAAGGATCTCCAGT+TGG | 0.617658 | tig0023518:-49472 | Msa1409320:CDS |
| GATGCAGGAGTCCATGCTTG+GGG | 0.645475 | tig0023518:-49432 | Msa1409320:CDS |
| TACGGCGCATTGTACAGTAG+GGG | 0.655013 | tig0023518:+49524 | None:intergenic |
| ATGTGGAACAATATTAGGAG+GGG | 0.656496 | tig0023518:+48628 | None:intergenic |
| AGCAGCAGCAACAACATCAG+TGG | 0.661577 | tig0023518:-50801 | Msa1409320:CDS |
| GTATAGACAAGTCCGAAACA+TGG | 0.664436 | tig0023518:-48765 | Msa1409320:intron |
| ACGGCGCATTGTACAGTAGG+GGG | 0.692690 | tig0023518:+49525 | None:intergenic |
| GAAACAAGACAAAGACCATG+TGG | 0.703286 | tig0023518:+48551 | None:intergenic |
| ACAAGACAAAGACCATGTGG+TGG | 0.708267 | tig0023518:+48554 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATAAAAAACTTGA+TGG | + | tig0023518:48270-48289 | None:intergenic | 10.0% |
| !!! | GTCTAAAATTTAAATATTAA+TGG | - | tig0023518:50755-50774 | Msa1409320:intron | 10.0% |
| !! | AACTAAAATAAGTATAGTAT+AGG | - | tig0023518:48704-48723 | Msa1409320:intron | 15.0% |
| !! | CCAAATATAAAAATCTAATA+TGG | + | tig0023518:48852-48871 | None:intergenic | 15.0% |
| !!! | CCATATTAGATTTTTATATT+TGG | - | tig0023518:48849-48868 | Msa1409320:intron | 15.0% |
| !! | CCTAATATAAAAATCTAATA+CGG | + | tig0023518:49023-49042 | None:intergenic | 15.0% |
| !! | TATTGAGTTTATACATATTA+TGG | + | tig0023518:50051-50070 | None:intergenic | 15.0% |
| !!! | CAACAATAACTTTTTTAATT+TGG | + | tig0023518:50433-50452 | None:intergenic | 15.0% |
| !!! | CCGTATTAGATTTTTATATT+AGG | - | tig0023518:49020-49039 | Msa1409320:CDS | 20.0% |
| !!! | TGTTTTTATTCATTAAATGC+TGG | + | tig0023518:49532-49551 | None:intergenic | 20.0% |
| !!! | TCTAATTAAAGCTTTTTCTA+CGG | + | tig0023518:49653-49672 | None:intergenic | 20.0% |
| !! | TTTCAAAAAATAAACCAAGA+AGG | + | tig0023518:50286-50305 | None:intergenic | 20.0% |
| !! | AAAATATGTGGAACAATATT+AGG | + | tig0023518:50536-50555 | None:intergenic | 20.0% |
| !!! | TAATATTGTTCCACATATTT+TGG | - | tig0023518:50535-50554 | Msa1409320:CDS | 20.0% |
| !! | TGTATTCTAATGATAATACT+AGG | - | tig0023518:50718-50737 | Msa1409320:intron | 20.0% |
| ! | ACAATAGAATTGAATAAGTG+TGG | - | tig0023518:48293-48312 | Msa1409320:three_prime_UTR | 25.0% |
| ! | ATTCATACATACAGAAAGAA+GGG | + | tig0023518:48405-48424 | None:intergenic | 25.0% |
| ! | AAGTTTCGGATAAAAAAGAT+AGG | + | tig0023518:49116-49135 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTATCCGAAACTT+AGG | - | tig0023518:49116-49135 | Msa1409320:CDS | 25.0% |
| ! | TGCAATATGCAAGTAATATT+GGG | + | tig0023518:49148-49167 | None:intergenic | 25.0% |
| ! | ATGCAATATGCAAGTAATAT+TGG | + | tig0023518:49149-49168 | None:intergenic | 25.0% |
| !!! | ACTTGGATTTGGTATTTTTA+AGG | + | tig0023518:49388-49407 | None:intergenic | 25.0% |
| ! | TAAAAATACCAAATCCAAGT+TGG | - | tig0023518:49388-49407 | Msa1409320:intron | 25.0% |
| !!! | TTTTTCTCCATTATTTTGAC+TGG | - | tig0023518:49575-49594 | Msa1409320:intron | 25.0% |
| ! | TTATAACTTATTGTGACTGT+AGG | - | tig0023518:49817-49836 | Msa1409320:intron | 25.0% |
| ! | TCCAAATTGTCGTAATTAAA+CGG | + | tig0023518:49860-49879 | None:intergenic | 25.0% |
| ! | ACATATTATGGTAAGCAAAA+TGG | + | tig0023518:50039-50058 | None:intergenic | 25.0% |
| !! | AAGCTGCAAGATATTTTATT+GGG | - | tig0023518:50086-50105 | Msa1409320:intron | 25.0% |
| !! | ATATATCTGTTTGCATTTTC+AGG | - | tig0023518:50472-50491 | Msa1409320:intron | 25.0% |
| ! | CTTCATAATCATTATATTGC+TGG | - | tig0023518:50817-50836 | Msa1409320:CDS | 25.0% |
| !! | AAAAGCTAAACTCCTATTTT+AGG | + | tig0023518:50853-50872 | None:intergenic | 25.0% |
| !!! | AAAATAGGAGTTTAGCTTTT+AGG | - | tig0023518:50853-50872 | Msa1409320:five_prime_UTR | 25.0% |
| !!! | AAATAGGAGTTTAGCTTTTA+GGG | - | tig0023518:50854-50873 | Msa1409320:five_prime_UTR | 25.0% |
| !! | GTGATCATTGAACTAAATTT+TGG | + | tig0023518:50935-50954 | None:intergenic | 25.0% |
| TGTGGATAAAGAAGAAGAAT+AGG | - | tig0023518:48311-48330 | Msa1409320:three_prime_UTR | 30.0% | |
| CATTCATACATACAGAAAGA+AGG | + | tig0023518:48406-48425 | None:intergenic | 30.0% | |
| GAAGAGAAAGAGAAAAAAGA+GGG | + | tig0023518:48439-48458 | None:intergenic | 30.0% | |
| AGAAGAGAAAGAGAAAAAAG+AGG | + | tig0023518:48440-48459 | None:intergenic | 30.0% | |
| GAATGAATGAAAAGAGAAGA+AGG | + | tig0023518:48614-48633 | None:intergenic | 30.0% | |
| ATAGTATAGGCTCTTAATGT+TGG | - | tig0023518:48717-48736 | Msa1409320:intron | 30.0% | |
| CACTCTTTATGAACTCTTAT+TGG | - | tig0023518:48914-48933 | Msa1409320:intron | 30.0% | |
| GGTGCATGTATATAAATAGT+GGG | - | tig0023518:48973-48992 | Msa1409320:intron | 30.0% | |
| AAAATCTAATACGGTATCTG+AGG | + | tig0023518:49014-49033 | None:intergenic | 30.0% | |
| TTGGGAAAAAACCTAAGTTT+CGG | + | tig0023518:49130-49149 | None:intergenic | 30.0% | |
| GCATTTCTCTCAAAGTAAAT+AGG | + | tig0023518:49247-49266 | None:intergenic | 30.0% | |
| !! | AAAATGGTGTCACAAACTTA+AGG | + | tig0023518:49316-49335 | None:intergenic | 30.0% |
| !! | ATTTTGAGCTTTATCCAACT+TGG | + | tig0023518:49405-49424 | None:intergenic | 30.0% |
| !! | GGGATTTGGTATTCTTTTTA+TGG | + | tig0023518:49471-49490 | None:intergenic | 30.0% |
| GAAAACTACACCTTTCTATA+TGG | + | tig0023518:49510-49529 | None:intergenic | 30.0% | |
| ACCGTTTAATTACGACAATT+TGG | - | tig0023518:49856-49875 | Msa1409320:intron | 30.0% | |
| ! | GAAGCTGCAAGATATTTTAT+TGG | - | tig0023518:50085-50104 | Msa1409320:intron | 30.0% |
| CCATTTCTTTCACATCAAAT+CGG | + | tig0023518:50183-50202 | None:intergenic | 30.0% | |
| TAATAATGTTCACAGCAGTA+CGG | + | tig0023518:50233-50252 | None:intergenic | 30.0% | |
| TTACCATGTTTATACCTTCT+TGG | - | tig0023518:50269-50288 | Msa1409320:intron | 30.0% | |
| ! | AAACCAAGAAGGTATAAACA+TGG | + | tig0023518:50275-50294 | None:intergenic | 30.0% |
| GAAGATTGAATACCATGTTT+CGG | + | tig0023518:50406-50425 | None:intergenic | 30.0% | |
| TATGTGGAACAATATTAGGA+GGG | + | tig0023518:50532-50551 | None:intergenic | 30.0% | |
| ATATGTGGAACAATATTAGG+AGG | + | tig0023518:50533-50552 | None:intergenic | 30.0% | |
| TCATACCATAAGAAAATGCA+AGG | - | tig0023518:50694-50713 | Msa1409320:intron | 30.0% | |
| ! | TACAACCTTGCATTTTCTTA+TGG | + | tig0023518:50702-50721 | None:intergenic | 30.0% |
| !! | AATTTGTTATCGTGTGAGGA+AGG | - | tig0023518:48227-48246 | Msa1409320:three_prime_UTR | 35.0% |
| !! | ATTTGTTATCGTGTGAGGAA+GGG | - | tig0023518:48228-48247 | Msa1409320:three_prime_UTR | 35.0% |
| AATAGGCAGTGAAATGAGTT+GGG | - | tig0023518:48328-48347 | Msa1409320:three_prime_UTR | 35.0% | |
| GAATTCTTCAAGTGATGTTG+TGG | - | tig0023518:48505-48524 | Msa1409320:CDS | 35.0% | |
| TGATATGATTGCCTGCATAA+CGG | + | tig0023518:48589-48608 | None:intergenic | 35.0% | |
| AATCTCACGTTCAATGCTAT+TGG | - | tig0023518:48942-48961 | Msa1409320:intron | 35.0% | |
| ATCTCACGTTCAATGCTATT+GGG | - | tig0023518:48943-48962 | Msa1409320:intron | 35.0% | |
| GGGTGCATGTATATAAATAG+TGG | - | tig0023518:48972-48991 | Msa1409320:intron | 35.0% | |
| CTTTACGAAAACGACTTGTA+AGG | - | tig0023518:49053-49072 | Msa1409320:CDS | 35.0% | |
| GAAAACGACTTGTAAGGTAA+GGG | - | tig0023518:49059-49078 | Msa1409320:CDS | 35.0% | |
| AAAACGACTTGTAAGGTAAG+GGG | - | tig0023518:49060-49079 | Msa1409320:CDS | 35.0% | |
| TCTCAAACATTGTAACCATG+AGG | - | tig0023518:49197-49216 | Msa1409320:CDS | 35.0% | |
| !! | TTTGTGACACCATTTTTGTG+AGG | - | tig0023518:49320-49339 | Msa1409320:CDS | 35.0% |
| ! | AGCTTTATCCAACTTGGATT+TGG | + | tig0023518:49399-49418 | None:intergenic | 35.0% |
| ! | TGAATGAAGTTTTCAGCTTG+AGG | - | tig0023518:49435-49454 | Msa1409320:CDS | 35.0% |
| GACTCTTGATCCATATAGAA+AGG | - | tig0023518:49497-49516 | Msa1409320:CDS | 35.0% | |
| ACAGTCACCAGTCAAAATAA+TGG | + | tig0023518:49585-49604 | None:intergenic | 35.0% | |
| TTAGAGCAACAAAGCTTCAA+AGG | - | tig0023518:49668-49687 | Msa1409320:intron | 35.0% | |
| TCTCTAACTCGTATATCAGA+AGG | + | tig0023518:49914-49933 | None:intergenic | 35.0% | |
| GATTTACAGTGATACCATCA+TGG | - | tig0023518:50000-50019 | Msa1409320:intron | 35.0% | |
| AAAATATGCTTCACTGGATC+TGG | + | tig0023518:50160-50179 | None:intergenic | 35.0% | |
| AATCGGAAAATATGCTTCAC+TGG | + | tig0023518:50166-50185 | None:intergenic | 35.0% | |
| ! | CCGATTTGATGTGAAAGAAA+TGG | - | tig0023518:50180-50199 | Msa1409320:intron | 35.0% |
| ! | ATTGTTGCTTCAGATTGGAA+AGG | - | tig0023518:50499-50518 | Msa1409320:intron | 35.0% |
| ATGTGGAACAATATTAGGAG+GGG | + | tig0023518:50531-50550 | None:intergenic | 35.0% | |
| ! | GCTGTTTCAGAGATGTAATT+GGG | - | tig0023518:50876-50895 | Msa1409320:five_prime_UTR | 35.0% |
| GAATAGGCAGTGAAATGAGT+TGG | - | tig0023518:48327-48346 | Msa1409320:three_prime_UTR | 40.0% | |
| CATACAGAAAGAAGGGAAGT+TGG | + | tig0023518:48398-48417 | None:intergenic | 40.0% | |
| CACTTATAGCCATCTTGGTT+GGG | + | tig0023518:48539-48558 | None:intergenic | 40.0% | |
| TTCCATCGTAAGACAAAAGG+AGG | + | tig0023518:48565-48584 | None:intergenic | 40.0% | |
| GATATGATTGCCTGCATAAC+GGG | + | tig0023518:48588-48607 | None:intergenic | 40.0% | |
| GTTGGAGATACTCACTTGTA+AGG | - | tig0023518:48735-48754 | Msa1409320:intron | 40.0% | |
| TCTTATCGCTTCAACACCAT+TGG | - | tig0023518:48775-48794 | Msa1409320:CDS | 40.0% | |
| !! | ACTTGGTGCGTGTGTATAAA+CGG | - | tig0023518:48798-48817 | Msa1409320:CDS | 40.0% |
| TGGTATTCGAGCTTACCAAT+CGG | + | tig0023518:48832-48851 | None:intergenic | 40.0% | |
| !! | AGTCACAAGACGGTTTTGTA+AGG | + | tig0023518:48885-48904 | None:intergenic | 40.0% |
| AAAACCGTCTTGTGACTTGA+GGG | - | tig0023518:48888-48907 | Msa1409320:intron | 40.0% | |
| CGAAAACGACTTGTAAGGTA+AGG | - | tig0023518:49058-49077 | Msa1409320:CDS | 40.0% | |
| TGATACGAATCAGAACCTCA+TGG | + | tig0023518:49215-49234 | None:intergenic | 40.0% | |
| !! | TGGTGTCACAAACTTAAGGT+TGG | + | tig0023518:49312-49331 | None:intergenic | 40.0% |
| CAGACAATGCCTCACAAAAA+TGG | + | tig0023518:49332-49351 | None:intergenic | 40.0% | |
| ATGGATCAAGAGTCAAAGCA+GGG | + | tig0023518:49491-49510 | None:intergenic | 40.0% | |
| TATGGATCAAGAGTCAAAGC+AGG | + | tig0023518:49492-49511 | None:intergenic | 40.0% | |
| ! | TTTGACTGGTGACTGTTTTC+AGG | - | tig0023518:49589-49608 | Msa1409320:intron | 40.0% |
| AGCAACAAAGCTTCAAAGGA+AGG | - | tig0023518:49672-49691 | Msa1409320:intron | 40.0% | |
| AAGCTGAAATTGCGCACAAA+AGG | + | tig0023518:49770-49789 | None:intergenic | 40.0% | |
| ! | AGCTTTCAAGTGGCAAACAT+TGG | - | tig0023518:49785-49804 | Msa1409320:intron | 40.0% |
| TCACGTCAATATCAATGTGC+AGG | - | tig0023518:50328-50347 | Msa1409320:intron | 40.0% | |
| CACGTCAATATCAATGTGCA+GGG | - | tig0023518:50329-50348 | Msa1409320:intron | 40.0% | |
| ! | CTTTTGCAGCTAGAAGTTGA+AGG | - | tig0023518:50356-50375 | Msa1409320:intron | 40.0% |
| GTATAGACAAGTCCGAAACA+TGG | - | tig0023518:50391-50410 | Msa1409320:intron | 40.0% | |
| TCACGACTCTCCAAAATATG+TGG | + | tig0023518:50548-50567 | None:intergenic | 40.0% | |
| GAAACAAGACAAAGACCATG+TGG | + | tig0023518:50608-50627 | None:intergenic | 40.0% | |
| TCATTATATTGCTGGAGCAG+TGG | - | tig0023518:50825-50844 | Msa1409320:exon | 40.0% | |
| ! | GGCTGTTTCAGAGATGTAAT+TGG | - | tig0023518:50875-50894 | Msa1409320:five_prime_UTR | 40.0% |
| AGGGAAGTTGGAGATGGAAT+CGG | + | tig0023518:48386-48405 | None:intergenic | 45.0% | |
| GAAAGAAGGGAAGTTGGAGA+TGG | + | tig0023518:48392-48411 | None:intergenic | 45.0% | |
| CCACTTATAGCCATCTTGGT+TGG | + | tig0023518:48540-48559 | None:intergenic | 45.0% | |
| CCAACCAAGATGGCTATAAG+TGG | - | tig0023518:48537-48556 | Msa1409320:CDS | 45.0% | |
| GGGTTCCATCGTAAGACAAA+AGG | + | tig0023518:48568-48587 | None:intergenic | 45.0% | |
| TCACTTGTAAGGTGAGAGAG+AGG | - | tig0023518:48746-48765 | Msa1409320:intron | 45.0% | |
| GGTATTCGAGCTTACCAATC+GGG | + | tig0023518:48831-48850 | None:intergenic | 45.0% | |
| !! | CGGTTTTGTAAGGACGAGTT+TGG | + | tig0023518:48875-48894 | None:intergenic | 45.0% |
| CAAAACCGTCTTGTGACTTG+AGG | - | tig0023518:48887-48906 | Msa1409320:intron | 45.0% | |
| ACGTTCAATGCTATTGGGCT+TGG | - | tig0023518:48948-48967 | Msa1409320:intron | 45.0% | |
| TTCAATGCTATTGGGCTTGG+TGG | - | tig0023518:48951-48970 | Msa1409320:intron | 45.0% | |
| ! | TCAATGCTATTGGGCTTGGT+GGG | - | tig0023518:48952-48971 | Msa1409320:intron | 45.0% |
| CAAGAGTCAAAGCAGGGATT+TGG | + | tig0023518:49485-49504 | None:intergenic | 45.0% | |
| !! | GTTTTCAGGCTGGCAATATC+AGG | - | tig0023518:49603-49622 | Msa1409320:intron | 45.0% |
| TCAAAGGAAGGATCTCCAGT+TGG | - | tig0023518:49684-49703 | Msa1409320:intron | 45.0% | |
| GCGCAATTTCAGCTTTCAAG+TGG | - | tig0023518:49775-49794 | Msa1409320:intron | 45.0% | |
| ! | AGAGTTCACGCTGCTTTGAA+CGG | - | tig0023518:49881-49900 | Msa1409320:intron | 45.0% |
| ! | TTTTTGCAGAAAACCGAGCG+TGG | + | tig0023518:49961-49980 | None:intergenic | 45.0% |
| ! | TAAGCAAAATGGCGCTGGAA+CGG | + | tig0023518:50028-50047 | None:intergenic | 45.0% |
| TATGGTAAGCAAAATGGCGC+TGG | + | tig0023518:50033-50052 | None:intergenic | 45.0% | |
| ATCTGGTACGCGATCATTGT+GGG | + | tig0023518:50143-50162 | None:intergenic | 45.0% | |
| ! | GTCGCATTGTTGCTTCAGAT+TGG | - | tig0023518:50494-50513 | Msa1409320:intron | 45.0% |
| TGCTATTATCTGCCACCACA+TGG | - | tig0023518:50590-50609 | Msa1409320:CDS | 45.0% | |
| ACAAGACAAAGACCATGTGG+TGG | + | tig0023518:50605-50624 | None:intergenic | 45.0% | |
| ! | GCATGCCAGAACTTTTTGCA+GGG | + | tig0023518:50673-50692 | None:intergenic | 45.0% |
| ! | TGCATGCCAGAACTTTTTGC+AGG | + | tig0023518:50674-50693 | None:intergenic | 45.0% |
| AGCAGCAGCAACAACATCAG+TGG | - | tig0023518:48355-48374 | Msa1409320:three_prime_UTR | 50.0% | |
| GAAGTGAAGCCCAACCAAGA+TGG | - | tig0023518:48527-48546 | Msa1409320:CDS | 50.0% | |
| ! | CGCCTCCTTTTGTCTTACGA+TGG | - | tig0023518:48560-48579 | Msa1409320:CDS | 50.0% |
| TACGATGGAACCCGTTATGC+AGG | - | tig0023518:48575-48594 | Msa1409320:CDS | 50.0% | |
| CGCTTCAACACCATTGGACT+TGG | - | tig0023518:48781-48800 | Msa1409320:CDS | 50.0% | |
| TACACACGCACCAAGTCCAA+TGG | + | tig0023518:48794-48813 | None:intergenic | 50.0% | |
| GGTGCGTGTGTATAAACGGT+TGG | - | tig0023518:48802-48821 | Msa1409320:CDS | 50.0% | |
| GCGTGTGTATAAACGGTTGG+TGG | - | tig0023518:48805-48824 | Msa1409320:CDS | 50.0% | |
| GACACCCTCAAGTCACAAGA+CGG | + | tig0023518:48895-48914 | None:intergenic | 50.0% | |
| ! | GGTATCTGAGGCTATCGATC+GGG | + | tig0023518:49002-49021 | None:intergenic | 50.0% |
| ! | CGGTATCTGAGGCTATCGAT+CGG | + | tig0023518:49003-49022 | None:intergenic | 50.0% |
| !! | ACTGGTGACTGTTTTCAGGC+TGG | - | tig0023518:49593-49612 | Msa1409320:intron | 50.0% |
| TACGGCGCATTGTACAGTAG+GGG | + | tig0023518:49635-49654 | None:intergenic | 50.0% | |
| CTACGGCGCATTGTACAGTA+GGG | + | tig0023518:49636-49655 | None:intergenic | 50.0% | |
| TCTACGGCGCATTGTACAGT+AGG | + | tig0023518:49637-49656 | None:intergenic | 50.0% | |
| AGGAAGGATCTCCAGTTGGT+TGG | - | tig0023518:49688-49707 | Msa1409320:intron | 50.0% | |
| TGATGCAGGAGTCCATGCTT+GGG | - | tig0023518:49723-49742 | Msa1409320:intron | 50.0% | |
| CGTGGAATTCAGCTGATGCA+GGG | + | tig0023518:49943-49962 | None:intergenic | 50.0% | |
| CATCAGCTGAATTCCACGCT+CGG | - | tig0023518:49945-49964 | Msa1409320:intron | 50.0% | |
| ! | AAGCAAAATGGCGCTGGAAC+GGG | + | tig0023518:50027-50046 | None:intergenic | 50.0% |
| GATCTGGTACGCGATCATTG+TGG | + | tig0023518:50144-50163 | None:intergenic | 50.0% | |
| GCAGCTAGAAGTTGAAGGCT+CGG | - | tig0023518:50361-50380 | Msa1409320:intron | 50.0% | |
| CAGCTAGAAGTTGAAGGCTC+GGG | - | tig0023518:50362-50381 | Msa1409320:intron | 50.0% | |
| TTTGGAGAGTCGTGATCGCA+AGG | - | tig0023518:50553-50572 | Msa1409320:CDS | 50.0% | |
| ! | GAACTTTTTGCAGGGCAACC+TGG | + | tig0023518:50665-50684 | None:intergenic | 50.0% |
| GGTTGCCCTGCAAAAAGTTC+TGG | - | tig0023518:50665-50684 | Msa1409320:intron | 50.0% | |
| GGAGCAGTGGAGCCTAAAAT+AGG | - | tig0023518:50838-50857 | Msa1409320:five_prime_UTR | 50.0% | |
| GGCGCCACTTATAGCCATCT+TGG | + | tig0023518:48544-48563 | None:intergenic | 55.0% | |
| !! | TAAACGGTTGGTGGCCCGAT+TGG | - | tig0023518:48814-48833 | Msa1409320:intron | 55.0% |
| ACGGCGCATTGTACAGTAGG+GGG | + | tig0023518:49634-49653 | None:intergenic | 55.0% | |
| ! | TCCAGTTGGTTGGTGCAAGC+AGG | - | tig0023518:49698-49717 | Msa1409320:intron | 55.0% |
| TCCTGCTTGCACCAACCAAC+TGG | + | tig0023518:49702-49721 | None:intergenic | 55.0% | |
| CTGATGCAGGAGTCCATGCT+TGG | - | tig0023518:49722-49741 | Msa1409320:intron | 55.0% | |
| GATGCAGGAGTCCATGCTTG+GGG | - | tig0023518:49724-49743 | Msa1409320:intron | 55.0% | |
| ATCTGACCTGACCCCAAGCA+TGG | + | tig0023518:49738-49757 | None:intergenic | 55.0% | |
| GCGTGGAATTCAGCTGATGC+AGG | + | tig0023518:49944-49963 | None:intergenic | 55.0% | |
| ! | AGTCACTTGTTGCCTCCACC+AGG | - | tig0023518:50644-50663 | Msa1409320:CDS | 55.0% |
| ! | CTTTTTGCAGGGCAACCTGG+TGG | + | tig0023518:50662-50681 | None:intergenic | 55.0% |
| GGTGCAAGCAGGACTGATGC+AGG | - | tig0023518:49709-49728 | Msa1409320:intron | 60.0% | |
| AGGAGTCCATGCTTGGGGTC+AGG | - | tig0023518:49729-49748 | Msa1409320:intron | 60.0% | |
| TTTGCAGGGCAACCTGGTGG+AGG | + | tig0023518:50659-50678 | None:intergenic | 60.0% | |
| GCGCTGGAACGGGTCCATGA+TGG | + | tig0023518:50017-50036 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023518 | gene | 48224 | 50954 | 48224 | ID=Msa1409320;Name=Msa1409320 |
| tig0023518 | mRNA | 48224 | 50954 | 48224 | ID=Msa1409320-mRNA-1;Parent=Msa1409320;Name=Msa1409320-mRNA-1;_AED=0.23;_eAED=0.23;_QI=117|0.8|0.83|1|1|1|6|227|340 |
| tig0023518 | exon | 48224 | 48684 | 48224 | ID=Msa1409320-mRNA-1:exon:26010;Parent=Msa1409320-mRNA-1 |
| tig0023518 | exon | 48766 | 48828 | 48766 | ID=Msa1409320-mRNA-1:exon:26009;Parent=Msa1409320-mRNA-1 |
| tig0023518 | exon | 48977 | 49339 | 48977 | ID=Msa1409320-mRNA-1:exon:26008;Parent=Msa1409320-mRNA-1 |
| tig0023518 | exon | 49428 | 49567 | 49428 | ID=Msa1409320-mRNA-1:exon:26007;Parent=Msa1409320-mRNA-1 |
| tig0023518 | exon | 50525 | 50675 | 50525 | ID=Msa1409320-mRNA-1:exon:26006;Parent=Msa1409320-mRNA-1 |
| tig0023518 | exon | 50766 | 50954 | 50766 | ID=Msa1409320-mRNA-1:exon:26005;Parent=Msa1409320-mRNA-1 |
| tig0023518 | five_prime_UTR | 50838 | 50954 | 50838 | ID=Msa1409320-mRNA-1:five_prime_utr;Parent=Msa1409320-mRNA-1 |
| tig0023518 | CDS | 50766 | 50837 | 50766 | ID=Msa1409320-mRNA-1:cds;Parent=Msa1409320-mRNA-1 |
| tig0023518 | CDS | 50525 | 50675 | 50525 | ID=Msa1409320-mRNA-1:cds;Parent=Msa1409320-mRNA-1 |
| tig0023518 | CDS | 49428 | 49567 | 49428 | ID=Msa1409320-mRNA-1:cds;Parent=Msa1409320-mRNA-1 |
| tig0023518 | CDS | 48977 | 49339 | 48977 | ID=Msa1409320-mRNA-1:cds;Parent=Msa1409320-mRNA-1 |
| tig0023518 | CDS | 48766 | 48828 | 48766 | ID=Msa1409320-mRNA-1:cds;Parent=Msa1409320-mRNA-1 |
| tig0023518 | CDS | 48451 | 48684 | 48451 | ID=Msa1409320-mRNA-1:cds;Parent=Msa1409320-mRNA-1 |
| tig0023518 | three_prime_UTR | 48224 | 48450 | 48224 | ID=Msa1409320-mRNA-1:three_prime_utr;Parent=Msa1409320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
