Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273330 | XP_003626941.2 | 99.555 | 449 | 2 | 0 | 1 | 449 | 254 | 702 | 0.0 | 923 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273330 | sp|Q9SRT3|CSLC6_ARATH | 83.742 | 449 | 72 | 1 | 1 | 449 | 235 | 682 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273330 | G7LF59 | 99.555 | 449 | 2 | 0 | 1 | 449 | 254 | 702 | 0.0 | 923 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630940 | Msa1273330 | 0.802806 | 4.711423e-49 | -8.615850e-47 |
| Msa0669180 | Msa1273330 | 0.802712 | 4.924834e-49 | -8.615850e-47 |
| Msa1261070 | Msa1273330 | 0.802652 | 5.068339e-49 | -8.615850e-47 |
| Msa1273330 | Msa1311390 | 0.862417 | 5.143936e-64 | -8.615850e-47 |
| Msa1213810 | Msa1273330 | 0.820583 | 6.353691e-53 | -8.615850e-47 |
| Msa1214320 | Msa1273330 | 0.817962 | 2.512013e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273330 | MtrunA17_Chr8g0339101 | 99.555 | 449 | 2 | 0 | 1 | 449 | 254 | 702 | 0.0 | 923 |
| Msa1273330 | MtrunA17_Chr4g0000581 | 78.222 | 450 | 96 | 2 | 1 | 449 | 251 | 699 | 0.0 | 717 |
| Msa1273330 | MtrunA17_Chr3g0139081 | 75.442 | 452 | 108 | 1 | 1 | 449 | 236 | 687 | 0.0 | 705 |
| Msa1273330 | MtrunA17_Chr6g0451381 | 76.444 | 450 | 105 | 1 | 1 | 449 | 217 | 666 | 0.0 | 700 |
| Msa1273330 | MtrunA17_Chr3g0135191 | 75.330 | 454 | 99 | 2 | 1 | 448 | 251 | 697 | 0.0 | 683 |
| Msa1273330 | MtrunA17_Chr1g0198111 | 43.722 | 446 | 221 | 3 | 1 | 445 | 108 | 524 | 9.50e-131 | 388 |
| Msa1273330 | MtrunA17_Chr1g0179441 | 42.825 | 446 | 225 | 4 | 1 | 445 | 101 | 517 | 2.96e-128 | 381 |
| Msa1273330 | MtrunA17_Chr1g0179381 | 42.601 | 446 | 225 | 5 | 1 | 445 | 101 | 516 | 3.11e-127 | 379 |
| Msa1273330 | MtrunA17_Chr4g0027221 | 41.425 | 449 | 246 | 2 | 1 | 448 | 110 | 542 | 4.48e-127 | 379 |
| Msa1273330 | MtrunA17_Chr1g0179421 | 41.834 | 447 | 228 | 4 | 1 | 445 | 101 | 517 | 7.08e-127 | 377 |
| Msa1273330 | MtrunA17_Chr7g0265711 | 42.058 | 447 | 227 | 4 | 1 | 445 | 110 | 526 | 1.03e-125 | 375 |
| Msa1273330 | MtrunA17_Chr7g0264621 | 43.333 | 450 | 225 | 5 | 1 | 448 | 106 | 527 | 1.16e-124 | 372 |
| Msa1273330 | MtrunA17_Chr1g0179391 | 48.265 | 317 | 163 | 1 | 32 | 347 | 1 | 317 | 5.80e-113 | 335 |
| Msa1273330 | MtrunA17_Chr4g0064791 | 58.427 | 89 | 37 | 0 | 1 | 89 | 112 | 200 | 5.02e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273330 | AT3G07330.1 | 83.742 | 449 | 72 | 1 | 1 | 449 | 235 | 682 | 0.0 | 798 |
| Msa1273330 | AT3G07330.2 | 83.742 | 449 | 72 | 1 | 1 | 449 | 235 | 682 | 0.0 | 798 |
| Msa1273330 | AT3G28180.1 | 72.805 | 467 | 103 | 3 | 1 | 449 | 213 | 673 | 0.0 | 694 |
| Msa1273330 | AT2G24630.1 | 75.442 | 452 | 106 | 3 | 1 | 449 | 241 | 690 | 0.0 | 693 |
| Msa1273330 | AT2G24630.2 | 75.442 | 452 | 106 | 3 | 1 | 449 | 241 | 690 | 0.0 | 693 |
| Msa1273330 | AT4G31590.1 | 76.380 | 453 | 102 | 2 | 1 | 449 | 241 | 692 | 0.0 | 686 |
| Msa1273330 | AT4G07960.1 | 75.000 | 448 | 108 | 1 | 1 | 448 | 255 | 698 | 0.0 | 670 |
| Msa1273330 | AT4G07960.2 | 75.000 | 448 | 108 | 1 | 1 | 448 | 255 | 698 | 0.0 | 670 |
| Msa1273330 | AT5G22740.1 | 41.871 | 449 | 233 | 3 | 1 | 448 | 111 | 532 | 2.68e-126 | 377 |
| Msa1273330 | AT5G03760.1 | 42.762 | 449 | 227 | 3 | 1 | 448 | 111 | 530 | 1.68e-124 | 372 |
| Msa1273330 | AT1G23480.3 | 49.008 | 353 | 179 | 1 | 5 | 356 | 66 | 418 | 7.41e-122 | 363 |
| Msa1273330 | AT4G13410.1 | 41.031 | 446 | 228 | 3 | 1 | 445 | 125 | 536 | 7.75e-122 | 365 |
| Msa1273330 | AT1G23480.1 | 48.739 | 357 | 182 | 1 | 1 | 356 | 134 | 490 | 6.35e-121 | 364 |
| Msa1273330 | AT1G23480.2 | 48.739 | 357 | 182 | 1 | 1 | 356 | 134 | 490 | 6.35e-121 | 364 |
| Msa1273330 | AT1G24070.1 | 40.807 | 446 | 233 | 4 | 1 | 445 | 136 | 551 | 6.69e-120 | 361 |
| Msa1273330 | AT2G35650.4 | 47.753 | 356 | 185 | 1 | 1 | 355 | 61 | 416 | 1.78e-119 | 358 |
| Msa1273330 | AT2G35650.2 | 47.753 | 356 | 185 | 1 | 1 | 355 | 61 | 416 | 1.78e-119 | 358 |
| Msa1273330 | AT2G35650.1 | 47.753 | 356 | 185 | 1 | 1 | 355 | 133 | 488 | 1.11e-118 | 358 |
| Msa1273330 | AT5G16190.1 | 40.583 | 446 | 234 | 3 | 1 | 445 | 27 | 442 | 4.17e-118 | 353 |
| Msa1273330 | AT5G16190.3 | 40.583 | 446 | 234 | 3 | 1 | 445 | 88 | 503 | 4.28e-117 | 352 |
| Msa1273330 | AT3G56000.1 | 39.780 | 455 | 233 | 6 | 1 | 448 | 106 | 526 | 2.65e-114 | 346 |
| Msa1273330 | AT5G16190.2 | 46.910 | 356 | 188 | 1 | 1 | 355 | 88 | 443 | 5.15e-114 | 343 |
| Msa1273330 | AT1G23480.4 | 41.546 | 414 | 212 | 3 | 33 | 445 | 21 | 405 | 1.86e-112 | 337 |
| Msa1273330 | AT4G13410.3 | 40.686 | 408 | 207 | 3 | 39 | 445 | 2 | 375 | 1.21e-110 | 331 |
| Msa1273330 | AT4G16590.1 | 41.505 | 412 | 207 | 5 | 36 | 445 | 140 | 519 | 2.93e-110 | 335 |
| Msa1273330 | AT5G16190.4 | 37.787 | 479 | 234 | 4 | 1 | 445 | 88 | 536 | 5.85e-110 | 335 |
| Msa1273330 | AT2G35650.3 | 48.137 | 322 | 166 | 1 | 35 | 355 | 9 | 330 | 9.55e-109 | 327 |
| Msa1273330 | AT1G24070.2 | 46.931 | 277 | 136 | 2 | 1 | 277 | 136 | 401 | 2.78e-85 | 267 |
| Msa1273330 | AT4G13410.2 | 51.046 | 239 | 117 | 0 | 1 | 239 | 125 | 363 | 2.69e-84 | 265 |
Find 131 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGATAAGGCACTATAAA+TGG | 0.168879 | 8_3:-7070208 | None:intergenic |
| TATTGAGACACTCAGATTTC+TGG | 0.202791 | 8_3:+7071098 | Msa1273330:three_prime_UTR |
| GGTATCTTTATTGACTTCTT+TGG | 0.223575 | 8_3:+7067731 | Msa1273330:CDS |
| AGCAAACAGTACTGCAAATT+TGG | 0.231974 | 8_3:-7070809 | None:intergenic |
| GCAACTGATTTGCTGTAAAT+TGG | 0.240412 | 8_3:-7070777 | None:intergenic |
| AGAACTGTATATAGCTTTAT+AGG | 0.258281 | 8_3:-7070954 | None:intergenic |
| GGACTTGTTACCTTGAAATA+AGG | 0.259806 | 8_3:-7066850 | None:intergenic |
| CATAGATCTTCCTCAGATTC+AGG | 0.261105 | 8_3:+7070400 | Msa1273330:CDS |
| TAAGATGTTCTCAGTGGTTT+TGG | 0.282366 | 8_3:+7070751 | Msa1273330:three_prime_UTR |
| TCAAGGCAGAAGTGCATAAA+TGG | 0.284235 | 8_3:+7066659 | Msa1273330:CDS |
| ATCGTCTTCTTTAAGAAATC+TGG | 0.286592 | 8_3:-7066826 | None:intergenic |
| CTTCTGCCTTGATAAGGTTT+TGG | 0.286898 | 8_3:-7066648 | None:intergenic |
| CAACAGCACCGCTGGCATTC+TGG | 0.296682 | 8_3:+7068018 | Msa1273330:CDS |
| TGGGTTGTTTGTTACATTCC+TGG | 0.297643 | 8_3:+7070142 | Msa1273330:CDS |
| ATTGACTTCTTTGGTTTCAA+TGG | 0.343119 | 8_3:+7067740 | Msa1273330:CDS |
| TTACAAATGCCCACCTTGCC+TGG | 0.343213 | 8_3:-7067631 | None:intergenic |
| AACATGCTTGCTAACAATCT+TGG | 0.347068 | 8_3:-7071127 | None:intergenic |
| TTCTATTTGTACAGGTTAGT+TGG | 0.354494 | 8_3:+7069990 | Msa1273330:intron |
| TATGTTCCAAGATAGGTTTA+AGG | 0.358919 | 8_3:-7070715 | None:intergenic |
| TCCATTGACCATGTTCCTTC+CGG | 0.362707 | 8_3:+7070102 | Msa1273330:CDS |
| AAATAAGTATGTTCCAAGAT+AGG | 0.371858 | 8_3:-7070722 | None:intergenic |
| CAGGCTGGGAGCTCAGCTTC+CGG | 0.372617 | 8_3:-7070121 | None:intergenic |
| CAATTTATCGTTCCACTTTG+AGG | 0.373287 | 8_3:+7067691 | Msa1273330:CDS |
| GTTGTTGGTCTTGATTTGAT+TGG | 0.373538 | 8_3:+7070601 | Msa1273330:CDS |
| ATTGAAGGGAAGGGATGATT+TGG | 0.384482 | 8_3:+7067601 | Msa1273330:intron |
| AAGAGCGTGAATGAATAAAA+TGG | 0.386686 | 8_3:-7070067 | None:intergenic |
| TGTACAAGCATTCTCTCCTT+TGG | 0.387277 | 8_3:-7066595 | None:intergenic |
| ACTTGAAGAAGATAGGTTTC+TGG | 0.389198 | 8_3:+7070931 | Msa1273330:three_prime_UTR |
| AACTTACCCCTTGAAATAAT+AGG | 0.392282 | 8_3:-7070573 | None:intergenic |
| TTCTACTTCCTATTATTTCA+AGG | 0.392356 | 8_3:+7070565 | Msa1273330:CDS |
| AGACTATTAGATCGCATTAG+AGG | 0.393143 | 8_3:-7070376 | None:intergenic |
| GCCAAACCTTAAACCTATCT+TGG | 0.394889 | 8_3:+7070709 | Msa1273330:three_prime_UTR |
| AATGAGTTGTGATTATGTTA+AGG | 0.406396 | 8_3:+7066759 | Msa1273330:CDS |
| TCTATTTGTACAGGTTAGTT+GGG | 0.412695 | 8_3:+7069991 | Msa1273330:intron |
| GAAGACGATACCTTATTTCA+AGG | 0.414787 | 8_3:+7066840 | Msa1273330:CDS |
| TATGCACTTCTGCCTTGATA+AGG | 0.420288 | 8_3:-7066654 | None:intergenic |
| TTTGGTTTCAATGGAACTGC+TGG | 0.420392 | 8_3:+7067749 | Msa1273330:CDS |
| TGTTGACACTTGAAGAAGAT+AGG | 0.420926 | 8_3:+7070924 | Msa1273330:three_prime_UTR |
| TTAAGAAATCTGGTGTTGGC+TGG | 0.423624 | 8_3:-7066816 | None:intergenic |
| TCAATGGAACTGCTGGTGTC+TGG | 0.424551 | 8_3:+7067756 | Msa1273330:CDS |
| TAACTGCTGCAATAGATTGA+TGG | 0.425260 | 8_3:-7066558 | None:intergenic |
| ATTAGATCGCATTAGAGGTT+CGG | 0.426256 | 8_3:-7070371 | None:intergenic |
| CGGAAGCTGAGCTCCCAGCC+TGG | 0.426639 | 8_3:+7070122 | Msa1273330:CDS |
| TTCTCTCCTTTGGCCAATCC+AGG | 0.431518 | 8_3:-7066585 | None:intergenic |
| CTTTGGAAGTTCTTACGAAT+GGG | 0.432489 | 8_3:+7070288 | Msa1273330:CDS |
| TCCAAGATAGGTTTAAGGTT+TGG | 0.433090 | 8_3:-7070710 | None:intergenic |
| AAGTTTAATGCAATGATATC+CGG | 0.439589 | 8_3:+7070256 | Msa1273330:CDS |
| AATGGGAATGACCGTGGGGC+TGG | 0.440805 | 8_3:-7070190 | None:intergenic |
| CCTCATTGATTCATGATAAA+CGG | 0.441399 | 8_3:+7070678 | Msa1273330:three_prime_UTR |
| AAGGTCATCAGAGACAGATT+TGG | 0.442220 | 8_3:+7070330 | Msa1273330:CDS |
| TGTACAAGTTCTTGATGATT+CGG | 0.442769 | 8_3:+7066612 | Msa1273330:CDS |
| TCTTGATTTGATTGGAGAGC+AGG | 0.447596 | 8_3:+7070609 | Msa1273330:CDS |
| CCACTTTGAGGTTGAACAGC+AGG | 0.453694 | 8_3:+7067703 | Msa1273330:CDS |
| AAAGTTGTTTCAGTTCTGAA+TGG | 0.457136 | 8_3:+7070894 | Msa1273330:three_prime_UTR |
| ACCAGCCGCCACTCTCCTCT+AGG | 0.460033 | 8_3:-7067790 | None:intergenic |
| TGCTGGTGTCTGGAGAATAA+AGG | 0.463477 | 8_3:+7067766 | Msa1273330:CDS |
| TTCTTTAAGAAATCTGGTGT+TGG | 0.467471 | 8_3:-7066820 | None:intergenic |
| ACTTCCAAAGCGAAATAATC+CGG | 0.468385 | 8_3:-7070275 | None:intergenic |
| AATGGCAACAAAGGGGTGTT+CGG | 0.468454 | 8_3:+7066677 | Msa1273330:CDS |
| GAAGATAAGGCACTATAAAT+GGG | 0.469507 | 8_3:-7070207 | None:intergenic |
| TTATACGCCTCGTAAGTCTC+TGG | 0.481256 | 8_3:-7067991 | None:intergenic |
| CACATACGAAACAATTGCAT+TGG | 0.483298 | 8_3:-7068042 | None:intergenic |
| AAAACCACTGAGAACATCTT+AGG | 0.484602 | 8_3:-7070749 | None:intergenic |
| GAGGTTGAACAGCAGGTGAA+TGG | 0.487037 | 8_3:+7067710 | Msa1273330:CDS |
| GCTTTGGAAGTTCTTACGAA+TGG | 0.487566 | 8_3:+7070287 | Msa1273330:CDS |
| AGATTTGGTTGCCTATGAAA+AGG | 0.488795 | 8_3:+7070345 | Msa1273330:CDS |
| TATTGCAGCAGTTAGTATCC+TGG | 0.489169 | 8_3:+7066567 | Msa1273330:CDS |
| ATGTAACAAACAACCCAGGC+TGG | 0.491766 | 8_3:-7070136 | None:intergenic |
| AGTGCATAAATGGCAACAAA+GGG | 0.493869 | 8_3:+7066669 | Msa1273330:CDS |
| ATATCCGGATTATTTCGCTT+TGG | 0.495428 | 8_3:+7070271 | Msa1273330:CDS |
| TGTTGATGTACTTCGTTCAA+AGG | 0.501646 | 8_3:+7068068 | Msa1273330:CDS |
| TGTTAAGGATTATGACTTCG+TGG | 0.502026 | 8_3:+7066774 | Msa1273330:CDS |
| GGAAGCTGAGCTCCCAGCCT+GGG | 0.505831 | 8_3:+7070123 | Msa1273330:CDS |
| TCTACTTCCTATTATTTCAA+GGG | 0.507497 | 8_3:+7070566 | Msa1273330:CDS |
| AGAAGCTTACTTTCTGCTCA+AGG | 0.508396 | 8_3:+7070535 | Msa1273330:CDS |
| GTGTTCTCAAATAGAAGATA+AGG | 0.510492 | 8_3:-7070220 | None:intergenic |
| AAGATCGAATTTAATTTACA+AGG | 0.511733 | 8_3:-7071210 | None:intergenic |
| GGATGATTTGGCATTAGTCC+AGG | 0.519366 | 8_3:+7067613 | Msa1273330:CDS |
| TCCGGAAGGAACATGGTCAA+TGG | 0.522315 | 8_3:-7070103 | None:intergenic |
| CTTGCATGCCTGAACTGAAA+AGG | 0.523256 | 8_3:+7070975 | Msa1273330:three_prime_UTR |
| ACAGCAAATCAGTTGCTGCT+TGG | 0.523373 | 8_3:+7070784 | Msa1273330:three_prime_UTR |
| CAGCAGTTAGTATCCTGGAT+TGG | 0.527759 | 8_3:+7066572 | Msa1273330:CDS |
| TTCGTGCTCATCTCTGCGGA+TGG | 0.530530 | 8_3:+7067849 | Msa1273330:CDS |
| CTCAGCTTCCGGAAGGAACA+TGG | 0.534805 | 8_3:-7070110 | None:intergenic |
| GCTTATACGCACAGGATACA+AGG | 0.535795 | 8_3:+7066717 | Msa1273330:CDS |
| GCAGAATAAGCTTCCTCAGA+AGG | 0.541637 | 8_3:-7070045 | None:intergenic |
| CCAGCCGCCACTCTCCTCTA+GGG | 0.542535 | 8_3:-7067789 | None:intergenic |
| AGATATCCAAAACCTTATCA+AGG | 0.543821 | 8_3:+7066642 | Msa1273330:CDS |
| CCCTAGAGGAGAGTGGCGGC+TGG | 0.547077 | 8_3:+7067789 | Msa1273330:CDS |
| CTATAAATGGGAATGACCGT+GGG | 0.571531 | 8_3:-7070195 | None:intergenic |
| ACGAACAACTGTTGAGGACA+TGG | 0.575504 | 8_3:+7067817 | Msa1273330:CDS |
| CTTAGGATAGACATGACTCC+AGG | 0.581702 | 8_3:-7070160 | None:intergenic |
| CTCTTCAATACCTGAATCTG+AGG | 0.585854 | 8_3:-7070410 | None:intergenic |
| CCTGCTGTTCAACCTCAAAG+TGG | 0.586676 | 8_3:-7067703 | None:intergenic |
| AAGTGCATAAATGGCAACAA+AGG | 0.590116 | 8_3:+7066668 | Msa1273330:CDS |
| AACTTATAAAGCATATGACT+TGG | 0.590845 | 8_3:-7070866 | None:intergenic |
| TGTAACAAACAACCCAGGCT+GGG | 0.590964 | 8_3:-7070135 | None:intergenic |
| CTGGGAGCTCAGCTTCCGGA+AGG | 0.591836 | 8_3:-7070117 | None:intergenic |
| CTACTTCCTATTATTTCAAG+GGG | 0.597338 | 8_3:+7070567 | Msa1273330:CDS |
| TGGAAGTTCTTACGAATGGG+TGG | 0.600212 | 8_3:+7070291 | Msa1273330:CDS |
| AACATAATCACAACTCATTG+CGG | 0.600523 | 8_3:-7066755 | None:intergenic |
| GGCATTAGTCCAGGCAAGGT+GGG | 0.601187 | 8_3:+7067622 | Msa1273330:CDS |
| ATTTGGCATTAGTCCAGGCA+AGG | 0.610560 | 8_3:+7067618 | Msa1273330:CDS |
| TTCGGATCATATATAGACAT+AGG | 0.611176 | 8_3:+7066695 | Msa1273330:CDS |
| ACTATAAATGGGAATGACCG+TGG | 0.616670 | 8_3:-7070196 | None:intergenic |
| AGACATAGGCTTATACGCAC+AGG | 0.619431 | 8_3:+7066709 | Msa1273330:CDS |
| AAGGTGGGCATTTGTAAACA+AGG | 0.624666 | 8_3:+7067637 | Msa1273330:CDS |
| CTGGAGAATAAAGGCCCTAG+AGG | 0.626735 | 8_3:+7067775 | Msa1273330:CDS |
| TAGTATCCTGGATTGGCCAA+AGG | 0.628007 | 8_3:+7066579 | Msa1273330:CDS |
| GCATGCCTGAACTGAAAAGG+TGG | 0.628244 | 8_3:+7070978 | Msa1273330:three_prime_UTR |
| ATACGCACAGGATACAAGGC+AGG | 0.634354 | 8_3:+7066721 | Msa1273330:CDS |
| TGGCATTAGTCCAGGCAAGG+TGG | 0.635723 | 8_3:+7067621 | Msa1273330:CDS |
| GTGGGGCTGGAAGAACACTT+AGG | 0.639853 | 8_3:-7070177 | None:intergenic |
| TAAGTGTTCTTCCAGCCCCA+CGG | 0.640158 | 8_3:+7070179 | Msa1273330:CDS |
| CCGTTTATCATGAATCAATG+AGG | 0.640950 | 8_3:-7070678 | None:intergenic |
| TGAATCAATGAGGATCTGAA+AGG | 0.643970 | 8_3:-7070668 | None:intergenic |
| ATCAATGAGGATCTGAAAGG+AGG | 0.649243 | 8_3:-7070665 | None:intergenic |
| TGAGCCTAAGATGTTCTCAG+TGG | 0.656236 | 8_3:+7070745 | Msa1273330:three_prime_UTR |
| AGAAAGTAAGCTTCTAACCG+AGG | 0.657953 | 8_3:-7070527 | None:intergenic |
| ATAAAGGCCCTAGAGGAGAG+TGG | 0.659042 | 8_3:+7067782 | Msa1273330:CDS |
| GTTAGAACGAACAACTGTTG+AGG | 0.664120 | 8_3:+7067811 | Msa1273330:CDS |
| GCTGTTCGTGCTCATCTCTG+CGG | 0.669570 | 8_3:+7067845 | Msa1273330:CDS |
| GCATTGGACCAGAATGCCAG+CGG | 0.701429 | 8_3:-7068026 | None:intergenic |
| GTGCATAAATGGCAACAAAG+GGG | 0.706412 | 8_3:+7066670 | Msa1273330:CDS |
| AAGGCCCTAGAGGAGAGTGG+CGG | 0.718388 | 8_3:+7067785 | Msa1273330:CDS |
| TATAAATGGGAATGACCGTG+GGG | 0.731407 | 8_3:-7070194 | None:intergenic |
| AGGAATGTAACAAACAACCC+AGG | 0.737741 | 8_3:-7070140 | None:intergenic |
| TTCATGATAAACGGTCACAG+TGG | 0.742556 | 8_3:+7070687 | Msa1273330:three_prime_UTR |
| TGAGCTTCCAGAGACTTACG+AGG | 0.750157 | 8_3:+7067984 | Msa1273330:CDS |
| AAGTCTCTGGAAGCTCACAG+AGG | 0.767051 | 8_3:-7067978 | None:intergenic |
| ATGACTTGGCAACAACAACG+AGG | 0.769623 | 8_3:-7070852 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATTATTAATTA+AGG | - | chr8_3:7069401-7069420 | None:intergenic | 0.0% |
| !! | AATAAAGATAAGAAAAATAA+AGG | - | chr8_3:7069573-7069592 | None:intergenic | 10.0% |
| !!! | AATCTCAACTTTAATTTATA+AGG | - | chr8_3:7066975-7066994 | None:intergenic | 15.0% |
| !! | TATAAATTAAAGTTGAGATT+AGG | + | chr8_3:7066975-7066994 | Msa1273330:intron | 15.0% |
| !! | ATAAATTAAAGTTGAGATTA+GGG | + | chr8_3:7066976-7066995 | Msa1273330:intron | 15.0% |
| !!! | CTATTAAATGAATATTTTCT+TGG | + | chr8_3:7068451-7068470 | Msa1273330:intron | 15.0% |
| !! | AATAAATTTAGTTATATGTC+AGG | + | chr8_3:7068721-7068740 | Msa1273330:intron | 15.0% |
| !! | TTTACAAAAAATAAACGAAA+AGG | + | chr8_3:7069707-7069726 | Msa1273330:intron | 15.0% |
| !! | TTACAAAAAATAAACGAAAA+GGG | + | chr8_3:7069708-7069727 | Msa1273330:intron | 15.0% |
| !!! | TTATATTTGTATGAAACTTT+TGG | + | chr8_3:7069820-7069839 | Msa1273330:intron | 15.0% |
| !! | TACTTTCAACTTTGAATTTA+TGG | - | chr8_3:7066874-7066893 | None:intergenic | 20.0% |
| !! | TATTATAAATCCTCAATTGA+GGG | - | chr8_3:7067010-7067029 | None:intergenic | 20.0% |
| !!! | TTACAAACTTTGTTTTGAAT+GGG | - | chr8_3:7067372-7067391 | None:intergenic | 20.0% |
| !!! | ATTTCTTTCATTTTTCAAAG+TGG | - | chr8_3:7067457-7067476 | None:intergenic | 20.0% |
| !! | TAGAGTAAAACAAGAAAATT+TGG | - | chr8_3:7067581-7067600 | None:intergenic | 20.0% |
| !!! | TATTTTTCTCAATGATGTTA+AGG | + | chr8_3:7067877-7067896 | Msa1273330:CDS | 20.0% |
| !! | ATAGCAAAAATAACAGAATA+AGG | - | chr8_3:7068165-7068184 | None:intergenic | 20.0% |
| !! | AACAAAAATTTCATAGTTGT+TGG | - | chr8_3:7068813-7068832 | None:intergenic | 20.0% |
| !!! | TCATTTTGACTGTAAAAAAA+AGG | - | chr8_3:7069233-7069252 | None:intergenic | 20.0% |
| !!! | AAATAATTTGACTTCTAGAA+AGG | + | chr8_3:7069941-7069960 | Msa1273330:intron | 20.0% |
| !!! | AAGATCGAATTTAATTTACA+AGG | - | chr8_3:7071213-7071232 | None:intergenic | 20.0% |
| ! | AATGAGTTGTGATTATGTTA+AGG | + | chr8_3:7066759-7066778 | Msa1273330:CDS | 25.0% |
| ! | CTATTATAAATCCTCAATTG+AGG | - | chr8_3:7067011-7067030 | None:intergenic | 25.0% |
| ! | AAATTCAAAGAACACTGAAT+TGG | - | chr8_3:7067277-7067296 | None:intergenic | 25.0% |
| ! | TTAATTACACAATCATTCAG+AGG | + | chr8_3:7067304-7067323 | Msa1273330:intron | 25.0% |
| !!! | GTTACAAACTTTGTTTTGAA+TGG | - | chr8_3:7067373-7067392 | None:intergenic | 25.0% |
| ! | CAAAACAAAGTTTGTAACAT+TGG | + | chr8_3:7067375-7067394 | Msa1273330:intron | 25.0% |
| !! | AAGAAATTTTCCACTATTTC+TGG | + | chr8_3:7067470-7067489 | Msa1273330:intron | 25.0% |
| !!! | AGAAATTTTCCACTATTTCT+GGG | + | chr8_3:7067471-7067490 | Msa1273330:intron | 25.0% |
| !!! | TCTTGTTTTACTCTAATTGA+AGG | + | chr8_3:7067586-7067605 | Msa1273330:intron | 25.0% |
| !!! | CTTGTTTTACTCTAATTGAA+GGG | + | chr8_3:7067587-7067606 | Msa1273330:intron | 25.0% |
| !! | AGTTGAATTCTTTTGAATCT+AGG | + | chr8_3:7068124-7068143 | Msa1273330:intron | 25.0% |
| !!! | CTGACTTTAAAATACTTACA+GGG | - | chr8_3:7068224-7068243 | None:intergenic | 25.0% |
| !!! | TCTGACTTTAAAATACTTAC+AGG | - | chr8_3:7068225-7068244 | None:intergenic | 25.0% |
| ! | ATGCTAATAATAATCACAAC+AGG | - | chr8_3:7068347-7068366 | None:intergenic | 25.0% |
| ! | ACATTCAGATTTGTATAAGA+AGG | + | chr8_3:7068394-7068413 | Msa1273330:intron | 25.0% |
| !!! | TTTTAACCTCCATTTTTTTC+CGG | - | chr8_3:7068782-7068801 | None:intergenic | 25.0% |
| !! | TTTGTAAACTGTGCAATTTT+TGG | + | chr8_3:7068832-7068851 | Msa1273330:intron | 25.0% |
| ! | TACGTCTCAAATTACATTAA+CGG | + | chr8_3:7068921-7068940 | Msa1273330:intron | 25.0% |
| ! | TGATTGAATTCTATTTGTAC+AGG | + | chr8_3:7069982-7070001 | Msa1273330:intron | 25.0% |
| ! | AAGTTTAATGCAATGATATC+CGG | + | chr8_3:7070256-7070275 | Msa1273330:CDS | 25.0% |
| !!! | ATTTATTTTGTTAACTGCCT+CGG | + | chr8_3:7070510-7070529 | Msa1273330:CDS | 25.0% |
| ! | TTCTACTTCCTATTATTTCA+AGG | + | chr8_3:7070565-7070584 | Msa1273330:CDS | 25.0% |
| ! | TCTACTTCCTATTATTTCAA+GGG | + | chr8_3:7070566-7070585 | Msa1273330:CDS | 25.0% |
| ! | AAATAAGTATGTTCCAAGAT+AGG | - | chr8_3:7070725-7070744 | None:intergenic | 25.0% |
| ! | AACTTATAAAGCATATGACT+TGG | - | chr8_3:7070869-7070888 | None:intergenic | 25.0% |
| !!! | AGAACTGTATATAGCTTTAT+AGG | - | chr8_3:7070957-7070976 | None:intergenic | 25.0% |
| ! | GATGAAGATAACAACAAAAA+TGG | - | chr8_3:7071168-7071187 | None:intergenic | 25.0% |
| ! | TGTACAAGTTCTTGATGATT+CGG | + | chr8_3:7066612-7066631 | Msa1273330:CDS | 30.0% |
| AGATATCCAAAACCTTATCA+AGG | + | chr8_3:7066642-7066661 | Msa1273330:CDS | 30.0% | |
| TTCGGATCATATATAGACAT+AGG | + | chr8_3:7066695-7066714 | Msa1273330:CDS | 30.0% | |
| AACATAATCACAACTCATTG+CGG | - | chr8_3:7066758-7066777 | None:intergenic | 30.0% | |
| ! | TTCTTTAAGAAATCTGGTGT+TGG | - | chr8_3:7066823-7066842 | None:intergenic | 30.0% |
| ! | ATCGTCTTCTTTAAGAAATC+TGG | - | chr8_3:7066829-7066848 | None:intergenic | 30.0% |
| ATTAAAGTTGAGATTAGGGA+AGG | + | chr8_3:7066980-7066999 | Msa1273330:intron | 30.0% | |
| TAAAAAACAAACGACACAGA+TGG | - | chr8_3:7067088-7067107 | None:intergenic | 30.0% | |
| GTGAATTACACTATCAACTA+AGG | - | chr8_3:7067498-7067517 | None:intergenic | 30.0% | |
| ! | TTTTACTCTAATTGAAGGGA+AGG | + | chr8_3:7067591-7067610 | Msa1273330:intron | 30.0% |
| TTTACTCTAATTGAAGGGAA+GGG | + | chr8_3:7067592-7067611 | Msa1273330:intron | 30.0% | |
| !! | GGTATCTTTATTGACTTCTT+TGG | + | chr8_3:7067731-7067750 | Msa1273330:CDS | 30.0% |
| ! | ATTGACTTCTTTGGTTTCAA+TGG | + | chr8_3:7067740-7067759 | Msa1273330:CDS | 30.0% |
| GTGCTATATTTCAAATCTTG+AGG | + | chr8_3:7067901-7067920 | Msa1273330:intron | 30.0% | |
| ! | CTTTCAACACCAATTTTTGT+TGG | + | chr8_3:7068263-7068282 | Msa1273330:intron | 30.0% |
| CAAATCTTGCCAACAAAAAT+TGG | - | chr8_3:7068275-7068294 | None:intergenic | 30.0% | |
| AGTCACTTACTAAAATACAC+AGG | + | chr8_3:7068311-7068330 | Msa1273330:intron | 30.0% | |
| TAAGTTATTAACCCTTCATC+AGG | - | chr8_3:7068526-7068545 | None:intergenic | 30.0% | |
| ! | TTGATAACAAATTGAACAGC+AGG | - | chr8_3:7068649-7068668 | None:intergenic | 30.0% |
| ! | GTAGTATGTTTTCAATTTCC+CGG | + | chr8_3:7068760-7068779 | Msa1273330:intron | 30.0% |
| TTCAATTTCCCGGAAAAAAA+TGG | + | chr8_3:7068770-7068789 | Msa1273330:intron | 30.0% | |
| !!! | TTTAACCTCCATTTTTTTCC+GGG | - | chr8_3:7068781-7068800 | None:intergenic | 30.0% |
| ATTAATGAAAACGCATGGAA+GGG | + | chr8_3:7068882-7068901 | Msa1273330:intron | 30.0% | |
| ATTACATTAACGGAGCAATT+AGG | + | chr8_3:7068931-7068950 | Msa1273330:intron | 30.0% | |
| ACAGTCAAAATGAAGAAGAA+AGG | + | chr8_3:7069240-7069259 | Msa1273330:intron | 30.0% | |
| CAGTCAAAATGAAGAAGAAA+GGG | + | chr8_3:7069241-7069260 | Msa1273330:intron | 30.0% | |
| ATGACCTAATTGTTAGATTC+AGG | + | chr8_3:7069640-7069659 | Msa1273330:intron | 30.0% | |
| AACACCTGAATCTAACAATT+AGG | - | chr8_3:7069647-7069666 | None:intergenic | 30.0% | |
| !! | TCACAATGTTCTCTAGAATA+AGG | + | chr8_3:7069674-7069693 | Msa1273330:intron | 30.0% |
| TTGTCGTTAATTACTTCATG+CGG | - | chr8_3:7069749-7069768 | None:intergenic | 30.0% | |
| CATACAATGAATGAAGTATG+TGG | - | chr8_3:7069892-7069911 | None:intergenic | 30.0% | |
| TTCTATTTGTACAGGTTAGT+TGG | + | chr8_3:7069990-7070009 | Msa1273330:intron | 30.0% | |
| ! | TCTATTTGTACAGGTTAGTT+GGG | + | chr8_3:7069991-7070010 | Msa1273330:intron | 30.0% |
| ! | AAGAGCGTGAATGAATAAAA+TGG | - | chr8_3:7070070-7070089 | None:intergenic | 30.0% |
| ! | GAAGATAAGGCACTATAAAT+GGG | - | chr8_3:7070210-7070229 | None:intergenic | 30.0% |
| ! | AGAAGATAAGGCACTATAAA+TGG | - | chr8_3:7070211-7070230 | None:intergenic | 30.0% |
| GTGTTCTCAAATAGAAGATA+AGG | - | chr8_3:7070223-7070242 | None:intergenic | 30.0% | |
| TGGTTACAAAAAAACTAGGA+AGG | + | chr8_3:7070311-7070330 | Msa1273330:CDS | 30.0% | |
| CTACTTCCTATTATTTCAAG+GGG | + | chr8_3:7070567-7070586 | Msa1273330:CDS | 30.0% | |
| AACTTACCCCTTGAAATAAT+AGG | - | chr8_3:7070576-7070595 | None:intergenic | 30.0% | |
| !! | CCTCATTGATTCATGATAAA+CGG | + | chr8_3:7070678-7070697 | Msa1273330:three_prime_UTR | 30.0% |
| TATGTTCCAAGATAGGTTTA+AGG | - | chr8_3:7070718-7070737 | None:intergenic | 30.0% | |
| !! | AAAGTTGTTTCAGTTCTGAA+TGG | + | chr8_3:7070894-7070913 | Msa1273330:three_prime_UTR | 30.0% |
| TAACTGCTGCAATAGATTGA+TGG | - | chr8_3:7066561-7066580 | None:intergenic | 35.0% | |
| AAGTGCATAAATGGCAACAA+AGG | + | chr8_3:7066668-7066687 | Msa1273330:CDS | 35.0% | |
| AGTGCATAAATGGCAACAAA+GGG | + | chr8_3:7066669-7066688 | Msa1273330:CDS | 35.0% | |
| TGTTAAGGATTATGACTTCG+TGG | + | chr8_3:7066774-7066793 | Msa1273330:CDS | 35.0% | |
| ! | GAAGACGATACCTTATTTCA+AGG | + | chr8_3:7066840-7066859 | Msa1273330:CDS | 35.0% |
| !! | GGACTTGTTACCTTGAAATA+AGG | - | chr8_3:7066853-7066872 | None:intergenic | 35.0% |
| ACCTACCAATTGCAGAATTT+CGG | + | chr8_3:7067043-7067062 | Msa1273330:intron | 35.0% | |
| TGCAGAATCTTCACATACTT+TGG | + | chr8_3:7067181-7067200 | Msa1273330:intron | 35.0% | |
| TGAGTCACTTATGTAACTTG+AGG | - | chr8_3:7067434-7067453 | None:intergenic | 35.0% | |
| !! | TTGATAGTGTAATTCACCCA+AGG | + | chr8_3:7067501-7067520 | Msa1273330:intron | 35.0% |
| CGTTGCAGTTTATAATCCTT+GGG | - | chr8_3:7067520-7067539 | None:intergenic | 35.0% | |
| ACGTTGCAGTTTATAATCCT+TGG | - | chr8_3:7067521-7067540 | None:intergenic | 35.0% | |
| CAATTTATCGTTCCACTTTG+AGG | + | chr8_3:7067691-7067710 | Msa1273330:CDS | 35.0% | |
| CACATACGAAACAATTGCAT+TGG | - | chr8_3:7068045-7068064 | None:intergenic | 35.0% | |
| TGTTGATGTACTTCGTTCAA+AGG | + | chr8_3:7068068-7068087 | Msa1273330:CDS | 35.0% | |
| !! | ATAAGAAGGCGTTGATTCAA+TGG | + | chr8_3:7068408-7068427 | Msa1273330:intron | 35.0% |
| ACTTATTAGTGACCTGATGA+AGG | + | chr8_3:7068511-7068530 | Msa1273330:intron | 35.0% | |
| CTTATTAGTGACCTGATGAA+GGG | + | chr8_3:7068512-7068531 | Msa1273330:intron | 35.0% | |
| GTCAGGCAAGACAATATTAT+AGG | + | chr8_3:7068738-7068757 | Msa1273330:intron | 35.0% | |
| AATTTCCCGGAAAAAAATGG+AGG | + | chr8_3:7068773-7068792 | Msa1273330:intron | 35.0% | |
| ! | CATGCGTTTTCATTAATGCA+GGG | - | chr8_3:7068879-7068898 | None:intergenic | 35.0% |
| CATTAATGAAAACGCATGGA+AGG | + | chr8_3:7068881-7068900 | Msa1273330:intron | 35.0% | |
| TTAATGAAAACGCATGGAAG+GGG | + | chr8_3:7068883-7068902 | Msa1273330:intron | 35.0% | |
| TAAACCTCTGTTGTCAATAG+CGG | + | chr8_3:7068997-7069016 | Msa1273330:intron | 35.0% | |
| ! | AGAACAGAGATGAGATTTTG+TGG | - | chr8_3:7069199-7069218 | None:intergenic | 35.0% |
| GATTAGAGATCTAGAGATCT+AGG | + | chr8_3:7069279-7069298 | Msa1273330:intron | 35.0% | |
| TTAGACCATAGTTGTCAAAG+CGG | - | chr8_3:7069516-7069535 | None:intergenic | 35.0% | |
| AACTATGGTCTAAACTGTTG+TGG | + | chr8_3:7069523-7069542 | Msa1273330:intron | 35.0% | |
| TCTAAACTGTTGTGGAATAG+TGG | + | chr8_3:7069531-7069550 | Msa1273330:intron | 35.0% | |
| ATACCGTGTAAGCATATACA+CGG | - | chr8_3:7069865-7069884 | None:intergenic | 35.0% | |
| CATTCATTGTATGCAATGCT+TGG | + | chr8_3:7069899-7069918 | Msa1273330:intron | 35.0% | |
| ! | TCTTTCTTTTCTTCCTTCTG+AGG | + | chr8_3:7070032-7070051 | Msa1273330:CDS | 35.0% |
| ATATCCGGATTATTTCGCTT+TGG | + | chr8_3:7070271-7070290 | Msa1273330:CDS | 35.0% | |
| ACTTCCAAAGCGAAATAATC+CGG | - | chr8_3:7070278-7070297 | None:intergenic | 35.0% | |
| ! | CTTTGGAAGTTCTTACGAAT+GGG | + | chr8_3:7070288-7070307 | Msa1273330:CDS | 35.0% |
| TGGGTGGTTACAAAAAAACT+AGG | + | chr8_3:7070307-7070326 | Msa1273330:CDS | 35.0% | |
| ! | AGATTTGGTTGCCTATGAAA+AGG | + | chr8_3:7070345-7070364 | Msa1273330:CDS | 35.0% |
| ATTAGATCGCATTAGAGGTT+CGG | - | chr8_3:7070374-7070393 | None:intergenic | 35.0% | |
| AGACTATTAGATCGCATTAG+AGG | - | chr8_3:7070379-7070398 | None:intergenic | 35.0% | |
| !! | AGACGATTTTTCTTGGTCTT+TGG | - | chr8_3:7070466-7070485 | None:intergenic | 35.0% |
| !! | GTTGTTGGTCTTGATTTGAT+TGG | + | chr8_3:7070601-7070620 | Msa1273330:CDS | 35.0% |
| ! | GTTTTGCATCCACTAAAAGT+TGG | - | chr8_3:7070646-7070665 | None:intergenic | 35.0% |
| TGAATCAATGAGGATCTGAA+AGG | - | chr8_3:7070671-7070690 | None:intergenic | 35.0% | |
| CCGTTTATCATGAATCAATG+AGG | - | chr8_3:7070681-7070700 | None:intergenic | 35.0% | |
| ! | TCCAAGATAGGTTTAAGGTT+TGG | - | chr8_3:7070713-7070732 | None:intergenic | 35.0% |
| AAAACCACTGAGAACATCTT+AGG | - | chr8_3:7070752-7070771 | None:intergenic | 35.0% | |
| ! | TAAGATGTTCTCAGTGGTTT+TGG | + | chr8_3:7070751-7070770 | Msa1273330:three_prime_UTR | 35.0% |
| !! | GCAACTGATTTGCTGTAAAT+TGG | - | chr8_3:7070780-7070799 | None:intergenic | 35.0% |
| AGCAAACAGTACTGCAAATT+TGG | - | chr8_3:7070812-7070831 | None:intergenic | 35.0% | |
| TGTTGACACTTGAAGAAGAT+AGG | + | chr8_3:7070924-7070943 | Msa1273330:three_prime_UTR | 35.0% | |
| ACTTGAAGAAGATAGGTTTC+TGG | + | chr8_3:7070931-7070950 | Msa1273330:three_prime_UTR | 35.0% | |
| TATTGAGACACTCAGATTTC+TGG | + | chr8_3:7071098-7071117 | Msa1273330:three_prime_UTR | 35.0% | |
| ! | AACATGCTTGCTAACAATCT+TGG | - | chr8_3:7071130-7071149 | None:intergenic | 35.0% |
| TATTGCAGCAGTTAGTATCC+TGG | + | chr8_3:7066567-7066586 | Msa1273330:CDS | 40.0% | |
| TGTACAAGCATTCTCTCCTT+TGG | - | chr8_3:7066598-7066617 | None:intergenic | 40.0% | |
| ! | CTTCTGCCTTGATAAGGTTT+TGG | - | chr8_3:7066651-7066670 | None:intergenic | 40.0% |
| TATGCACTTCTGCCTTGATA+AGG | - | chr8_3:7066657-7066676 | None:intergenic | 40.0% | |
| ! | TCAAGGCAGAAGTGCATAAA+TGG | + | chr8_3:7066659-7066678 | Msa1273330:CDS | 40.0% |
| GTGCATAAATGGCAACAAAG+GGG | + | chr8_3:7066670-7066689 | Msa1273330:CDS | 40.0% | |
| !! | TTAAGAAATCTGGTGTTGGC+TGG | - | chr8_3:7066819-7066838 | None:intergenic | 40.0% |
| TCCGAAATTCTGCAATTGGT+AGG | - | chr8_3:7067047-7067066 | None:intergenic | 40.0% | |
| CAAGTCCGAAATTCTGCAAT+TGG | - | chr8_3:7067051-7067070 | None:intergenic | 40.0% | |
| ATGTGCATCAGTCTCAACTT+TGG | - | chr8_3:7067239-7067258 | None:intergenic | 40.0% | |
| ATGGGAGAATAGTAGATGAC+AGG | - | chr8_3:7067354-7067373 | None:intergenic | 40.0% | |
| AACTAAGGTCCCAGAAATAG+TGG | - | chr8_3:7067483-7067502 | None:intergenic | 40.0% | |
| ATTGAAGGGAAGGGATGATT+TGG | + | chr8_3:7067601-7067620 | Msa1273330:intron | 40.0% | |
| AAGGTGGGCATTTGTAAACA+AGG | + | chr8_3:7067637-7067656 | Msa1273330:CDS | 40.0% | |
| ! | TTTGGTTTCAATGGAACTGC+TGG | + | chr8_3:7067749-7067768 | Msa1273330:CDS | 40.0% |
| GTTAGAACGAACAACTGTTG+AGG | + | chr8_3:7067811-7067830 | Msa1273330:CDS | 40.0% | |
| ATAAAAAACAACAGCACCGC+TGG | + | chr8_3:7068010-7068029 | Msa1273330:CDS | 40.0% | |
| TTTGGTCTGAGTAGTGTTCA+TGG | + | chr8_3:7068850-7068869 | Msa1273330:intron | 40.0% | |
| ! | CCATGCGTTTTCATTAATGC+AGG | - | chr8_3:7068880-7068899 | None:intergenic | 40.0% |
| CCTGCATTAATGAAAACGCA+TGG | + | chr8_3:7068877-7068896 | Msa1273330:intron | 40.0% | |
| TAATGAAAACGCATGGAAGG+GGG | + | chr8_3:7068884-7068903 | Msa1273330:intron | 40.0% | |
| TGAGACGTATTAAGTTCCTC+CGG | - | chr8_3:7068910-7068929 | None:intergenic | 40.0% | |
| TCGTTAATTACTTCATGCGG+AGG | - | chr8_3:7069746-7069765 | None:intergenic | 40.0% | |
| ACGGCATATGAGCATTTCAA+TGG | - | chr8_3:7069846-7069865 | None:intergenic | 40.0% | |
| ATGCCGTGTATATGCTTACA+CGG | + | chr8_3:7069859-7069878 | Msa1273330:intron | 40.0% | |
| AGGAATGTAACAAACAACCC+AGG | - | chr8_3:7070143-7070162 | None:intergenic | 40.0% | |
| ! | TGGGTTGTTTGTTACATTCC+TGG | + | chr8_3:7070142-7070161 | Msa1273330:CDS | 40.0% |
| TATAAATGGGAATGACCGTG+GGG | - | chr8_3:7070197-7070216 | None:intergenic | 40.0% | |
| CTATAAATGGGAATGACCGT+GGG | - | chr8_3:7070198-7070217 | None:intergenic | 40.0% | |
| ACTATAAATGGGAATGACCG+TGG | - | chr8_3:7070199-7070218 | None:intergenic | 40.0% | |
| !! | GCTTTGGAAGTTCTTACGAA+TGG | + | chr8_3:7070287-7070306 | Msa1273330:CDS | 40.0% |
| AAGGTCATCAGAGACAGATT+TGG | + | chr8_3:7070330-7070349 | Msa1273330:CDS | 40.0% | |
| ! | AGGTTCGGATTCCTTTTCAT+AGG | - | chr8_3:7070359-7070378 | None:intergenic | 40.0% |
| CATAGATCTTCCTCAGATTC+AGG | + | chr8_3:7070400-7070419 | Msa1273330:CDS | 40.0% | |
| CTCTTCAATACCTGAATCTG+AGG | - | chr8_3:7070413-7070432 | None:intergenic | 40.0% | |
| ! | CCTGTAGAGACGATTTTTCT+TGG | - | chr8_3:7070473-7070492 | None:intergenic | 40.0% |
| CCAAGAAAAATCGTCTCTAC+AGG | + | chr8_3:7070470-7070489 | Msa1273330:CDS | 40.0% | |
| AGAAAGTAAGCTTCTAACCG+AGG | - | chr8_3:7070530-7070549 | None:intergenic | 40.0% | |
| AGAAGCTTACTTTCTGCTCA+AGG | + | chr8_3:7070535-7070554 | Msa1273330:CDS | 40.0% | |
| !! | GGGGTAAGTTTTCTTGTTGT+TGG | + | chr8_3:7070586-7070605 | Msa1273330:CDS | 40.0% |
| ! | TCTTGATTTGATTGGAGAGC+AGG | + | chr8_3:7070609-7070628 | Msa1273330:CDS | 40.0% |
| ! | AGTTGAGCTCCAACTTTTAG+TGG | + | chr8_3:7070634-7070653 | Msa1273330:exon | 40.0% |
| ATCAATGAGGATCTGAAAGG+AGG | - | chr8_3:7070668-7070687 | None:intergenic | 40.0% | |
| TTCATGATAAACGGTCACAG+TGG | + | chr8_3:7070687-7070706 | Msa1273330:three_prime_UTR | 40.0% | |
| GCCAAACCTTAAACCTATCT+TGG | + | chr8_3:7070709-7070728 | Msa1273330:three_prime_UTR | 40.0% | |
| ! | AATCTCCACCTTTTCAGTTC+AGG | - | chr8_3:7070986-7071005 | None:intergenic | 40.0% |
| CAGCAGTTAGTATCCTGGAT+TGG | + | chr8_3:7066572-7066591 | Msa1273330:CDS | 45.0% | |
| !! | TAGTATCCTGGATTGGCCAA+AGG | + | chr8_3:7066579-7066598 | Msa1273330:CDS | 45.0% |
| !! | AATGGCAACAAAGGGGTGTT+CGG | + | chr8_3:7066677-7066696 | Msa1273330:CDS | 45.0% |
| AGACATAGGCTTATACGCAC+AGG | + | chr8_3:7066709-7066728 | Msa1273330:CDS | 45.0% | |
| GCTTATACGCACAGGATACA+AGG | + | chr8_3:7066717-7066736 | Msa1273330:CDS | 45.0% | |
| CGACACAGATGGTTGTGATT+TGG | - | chr8_3:7067077-7067096 | None:intergenic | 45.0% | |
| GCATCAGTCTCAACTTTGGA+GGG | - | chr8_3:7067235-7067254 | None:intergenic | 45.0% | |
| TGCATCAGTCTCAACTTTGG+AGG | - | chr8_3:7067236-7067255 | None:intergenic | 45.0% | |
| ! | GGATGATTTGGCATTAGTCC+AGG | + | chr8_3:7067613-7067632 | Msa1273330:CDS | 45.0% |
| ATTTGGCATTAGTCCAGGCA+AGG | + | chr8_3:7067618-7067637 | Msa1273330:CDS | 45.0% | |
| TGCTGGTGTCTGGAGAATAA+AGG | + | chr8_3:7067766-7067785 | Msa1273330:CDS | 45.0% | |
| ACGAACAACTGTTGAGGACA+TGG | + | chr8_3:7067817-7067836 | Msa1273330:CDS | 45.0% | |
| TTATACGCCTCGTAAGTCTC+TGG | - | chr8_3:7067994-7068013 | None:intergenic | 45.0% | |
| ACAGCATCTTGTCTGCCTTT+AGG | - | chr8_3:7068976-7068995 | None:intergenic | 45.0% | |
| TAGACCGCTATTGACAACAG+AGG | - | chr8_3:7069004-7069023 | None:intergenic | 45.0% | |
| TTGTCAATAGCGGTCTAACG+CGG | + | chr8_3:7069007-7069026 | Msa1273330:intron | 45.0% | |
| AGGCAAAAGCGGAACAAAAG+CGG | + | chr8_3:7069084-7069103 | Msa1273330:intron | 45.0% | |
| TAGTTGTCAAAGCGGAAACG+CGG | - | chr8_3:7069508-7069527 | None:intergenic | 45.0% | |
| CGTTTCCGCTTTGACAACTA+TGG | + | chr8_3:7069508-7069527 | Msa1273330:intron | 45.0% | |
| GCATAACCTTCAGCCAATGA+TGG | - | chr8_3:7069617-7069636 | None:intergenic | 45.0% | |
| GCAGAATAAGCTTCCTCAGA+AGG | - | chr8_3:7070048-7070067 | None:intergenic | 45.0% | |
| TCCATTGACCATGTTCCTTC+CGG | + | chr8_3:7070102-7070121 | Msa1273330:CDS | 45.0% | |
| TGTAACAAACAACCCAGGCT+GGG | - | chr8_3:7070138-7070157 | None:intergenic | 45.0% | |
| ATGTAACAAACAACCCAGGC+TGG | - | chr8_3:7070139-7070158 | None:intergenic | 45.0% | |
| CTTAGGATAGACATGACTCC+AGG | - | chr8_3:7070163-7070182 | None:intergenic | 45.0% | |
| TGGAAGTTCTTACGAATGGG+TGG | + | chr8_3:7070291-7070310 | Msa1273330:CDS | 45.0% | |
| TGAGCCTAAGATGTTCTCAG+TGG | + | chr8_3:7070745-7070764 | Msa1273330:three_prime_UTR | 45.0% | |
| ACAGCAAATCAGTTGCTGCT+TGG | + | chr8_3:7070784-7070803 | Msa1273330:three_prime_UTR | 45.0% | |
| ! | ATGACTTGGCAACAACAACG+AGG | - | chr8_3:7070855-7070874 | None:intergenic | 45.0% |
| CTTGCATGCCTGAACTGAAA+AGG | + | chr8_3:7070975-7070994 | Msa1273330:three_prime_UTR | 45.0% | |
| !!! | TATTATTTTTATTTTAAGAA+TGG | + | chr8_3:7068182-7068201 | Msa1273330:intron | 5.0% |
| TTCTCTCCTTTGGCCAATCC+AGG | - | chr8_3:7066588-7066607 | None:intergenic | 50.0% | |
| ATACGCACAGGATACAAGGC+AGG | + | chr8_3:7066721-7066740 | Msa1273330:CDS | 50.0% | |
| TTACAAATGCCCACCTTGCC+TGG | - | chr8_3:7067634-7067653 | None:intergenic | 50.0% | |
| CCTGCTGTTCAACCTCAAAG+TGG | - | chr8_3:7067706-7067725 | None:intergenic | 50.0% | |
| !! | CCACTTTGAGGTTGAACAGC+AGG | + | chr8_3:7067703-7067722 | Msa1273330:CDS | 50.0% |
| GAGGTTGAACAGCAGGTGAA+TGG | + | chr8_3:7067710-7067729 | Msa1273330:CDS | 50.0% | |
| TCAATGGAACTGCTGGTGTC+TGG | + | chr8_3:7067756-7067775 | Msa1273330:CDS | 50.0% | |
| CTGGAGAATAAAGGCCCTAG+AGG | + | chr8_3:7067775-7067794 | Msa1273330:CDS | 50.0% | |
| ATAAAGGCCCTAGAGGAGAG+TGG | + | chr8_3:7067782-7067801 | Msa1273330:CDS | 50.0% | |
| ! | AAGTCTCTGGAAGCTCACAG+AGG | - | chr8_3:7067981-7068000 | None:intergenic | 50.0% |
| TGAGCTTCCAGAGACTTACG+AGG | + | chr8_3:7067984-7068003 | Msa1273330:CDS | 50.0% | |
| GAGCAATTAGGAGCTCTCTC+TGG | + | chr8_3:7068943-7068962 | Msa1273330:intron | 50.0% | |
| GGCAAAAGCGGAACAAAAGC+GGG | + | chr8_3:7069085-7069104 | Msa1273330:intron | 50.0% | |
| TCCGGAAGGAACATGGTCAA+TGG | - | chr8_3:7070106-7070125 | None:intergenic | 50.0% | |
| TAAGTGTTCTTCCAGCCCCA+CGG | + | chr8_3:7070179-7070198 | Msa1273330:CDS | 50.0% | |
| GCATGCCTGAACTGAAAAGG+TGG | + | chr8_3:7070978-7070997 | Msa1273330:three_prime_UTR | 50.0% | |
| ! | GGAAGGCACACCCTCAATTG+AGG | + | chr8_3:7066997-7067016 | Msa1273330:intron | 55.0% |
| TGGCATTAGTCCAGGCAAGG+TGG | + | chr8_3:7067621-7067640 | Msa1273330:CDS | 55.0% | |
| GGCATTAGTCCAGGCAAGGT+GGG | + | chr8_3:7067622-7067641 | Msa1273330:CDS | 55.0% | |
| GCTGTTCGTGCTCATCTCTG+CGG | + | chr8_3:7067845-7067864 | Msa1273330:CDS | 55.0% | |
| TTCGTGCTCATCTCTGCGGA+TGG | + | chr8_3:7067849-7067868 | Msa1273330:CDS | 55.0% | |
| GCATTGGACCAGAATGCCAG+CGG | - | chr8_3:7068029-7068048 | None:intergenic | 55.0% | |
| TAGGAGCTCTCTCTGGACTC+TGG | + | chr8_3:7068950-7068969 | Msa1273330:intron | 55.0% | |
| CTCTCTGGACTCTGGCCTAA+AGG | + | chr8_3:7068958-7068977 | Msa1273330:intron | 55.0% | |
| ! | CTTTTGCCTAACGCGCGACT+CGG | - | chr8_3:7069073-7069092 | None:intergenic | 55.0% |
| AGTCGCGCGTTAGGCAAAAG+CGG | + | chr8_3:7069073-7069092 | Msa1273330:intron | 55.0% | |
| GGAACAAAAGCGGGTCAACG+CGG | + | chr8_3:7069094-7069113 | Msa1273330:intron | 55.0% | |
| GAACAAAAGCGGGTCAACGC+GGG | + | chr8_3:7069095-7069114 | Msa1273330:intron | 55.0% | |
| GGGCAAAAAGCGGGTCAATG+CGG | + | chr8_3:7069115-7069134 | Msa1273330:intron | 55.0% | |
| GGCAAAAAGCGGGTCAATGC+GGG | + | chr8_3:7069116-7069135 | Msa1273330:intron | 55.0% | |
| GGGTCAATGCGGGCAAAAAG+CGG | + | chr8_3:7069126-7069145 | Msa1273330:intron | 55.0% | |
| GGTCAATGCGGGCAAAAAGC+GGG | + | chr8_3:7069127-7069146 | Msa1273330:intron | 55.0% | |
| GGGCAAAAAGCGGGTCAACA+CGG | + | chr8_3:7069136-7069155 | Msa1273330:intron | 55.0% | |
| GGCAAAAAGCGGGTCAACAC+GGG | + | chr8_3:7069137-7069156 | Msa1273330:intron | 55.0% | |
| GGGTCAACACGGGCAAAAAG+CGG | + | chr8_3:7069147-7069166 | Msa1273330:intron | 55.0% | |
| GGTCAACACGGGCAAAAAGC+GGG | + | chr8_3:7069148-7069167 | Msa1273330:intron | 55.0% | |
| ! | TACCGCGCCGCGTCAATTTT+TGG | + | chr8_3:7069467-7069486 | Msa1273330:intron | 55.0% |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | + | chr8_3:7069468-7069487 | Msa1273330:intron | 55.0% |
| GGCCACCCCAAAAATTGACG+CGG | - | chr8_3:7069477-7069496 | None:intergenic | 55.0% | |
| AAGCCACCTTGCGCCATCAT+TGG | + | chr8_3:7069601-7069620 | Msa1273330:intron | 55.0% | |
| ! | CTTCAGCCAATGATGGCGCA+AGG | - | chr8_3:7069610-7069629 | None:intergenic | 55.0% |
| ! | CTTGCGCCATCATTGGCTGA+AGG | + | chr8_3:7069608-7069627 | Msa1273330:intron | 55.0% |
| CTCAGCTTCCGGAAGGAACA+TGG | - | chr8_3:7070113-7070132 | None:intergenic | 55.0% | |
| GTGGGGCTGGAAGAACACTT+AGG | - | chr8_3:7070180-7070199 | None:intergenic | 55.0% | |
| AAGGCCCTAGAGGAGAGTGG+CGG | + | chr8_3:7067785-7067804 | Msa1273330:CDS | 60.0% | |
| CAACAGCACCGCTGGCATTC+TGG | + | chr8_3:7068018-7068037 | Msa1273330:CDS | 60.0% | |
| GAAAACGCATGGAAGGGGGC+CGG | + | chr8_3:7068888-7068907 | Msa1273330:intron | 60.0% | |
| AATAGCGGTCTAACGCGGCG+CGG | + | chr8_3:7069012-7069031 | Msa1273330:intron | 60.0% | |
| GGGTCAACGCGGGCAAAAAG+CGG | + | chr8_3:7069105-7069124 | Msa1273330:intron | 60.0% | |
| GGTCAACGCGGGCAAAAAGC+GGG | + | chr8_3:7069106-7069125 | Msa1273330:intron | 60.0% | |
| ! | GCGGGCGCTTTTACATGACG+CGG | - | chr8_3:7069435-7069454 | None:intergenic | 60.0% |
| AATTGACGCGGCGCGGTAAG+CGG | - | chr8_3:7069465-7069484 | None:intergenic | 60.0% | |
| CCCCAAAAATTGACGCGGCG+CGG | - | chr8_3:7069472-7069491 | None:intergenic | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | + | chr8_3:7069469-7069488 | Msa1273330:intron | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | + | chr8_3:7069472-7069491 | Msa1273330:intron | 60.0% |
| ! | CAGCCAATGATGGCGCAAGG+TGG | - | chr8_3:7069607-7069626 | None:intergenic | 60.0% |
| AATGGGAATGACCGTGGGGC+TGG | - | chr8_3:7070193-7070212 | None:intergenic | 60.0% | |
| CCAGCCGCCACTCTCCTCTA+GGG | - | chr8_3:7067792-7067811 | None:intergenic | 65.0% | |
| ACCAGCCGCCACTCTCCTCT+AGG | - | chr8_3:7067793-7067812 | None:intergenic | 65.0% | |
| ATTGACGCGGCGCGGTAAGC+GGG | - | chr8_3:7069464-7069483 | None:intergenic | 65.0% | |
| GTCAAAGCGGAAACGCGGCG+CGG | - | chr8_3:7069503-7069522 | None:intergenic | 65.0% | |
| CTGGGAGCTCAGCTTCCGGA+AGG | - | chr8_3:7070120-7070139 | None:intergenic | 65.0% | |
| CAGGCTGGGAGCTCAGCTTC+CGG | - | chr8_3:7070124-7070143 | None:intergenic | 65.0% | |
| GGAAGCTGAGCTCCCAGCCT+GGG | + | chr8_3:7070123-7070142 | Msa1273330:CDS | 65.0% | |
| CCCTAGAGGAGAGTGGCGGC+TGG | + | chr8_3:7067789-7067808 | Msa1273330:CDS | 70.0% | |
| AACGCATGGAAGGGGGCCGG+AGG | + | chr8_3:7068891-7068910 | Msa1273330:intron | 70.0% | |
| CGGTCGCGTTCTGACGCGCT+AGG | - | chr8_3:7069053-7069072 | None:intergenic | 70.0% | |
| ACGCGACCGAGTCGCGCGTT+AGG | + | chr8_3:7069064-7069083 | Msa1273330:intron | 70.0% | |
| CGGAAGCTGAGCTCCCAGCC+TGG | + | chr8_3:7070122-7070141 | Msa1273330:CDS | 70.0% | |
| CGGTCTAACGCGGCGCGGAG+CGG | + | chr8_3:7069017-7069036 | Msa1273330:intron | 75.0% | |
| ! | GCGGTAAGCGGGCGCGACGC+GGG | - | chr8_3:7069453-7069472 | None:intergenic | 80.0% |
| ! | CGCGGTAAGCGGGCGCGACG+CGG | - | chr8_3:7069454-7069473 | None:intergenic | 80.0% |
| ! | AGCGGAAACGCGGCGCGGCG+CGG | - | chr8_3:7069498-7069517 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 7066553 | 7071249 | 7066553 | ID=Msa1273330;Name=Msa1273330 |
| chr8_3 | mRNA | 7066553 | 7071249 | 7066553 | ID=Msa1273330-mRNA-1;Parent=Msa1273330;Name=Msa1273330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.75|1|1|1|4|610|449 |
| chr8_3 | exon | 7066553 | 7066861 | 7066553 | ID=Msa1273330-mRNA-1:exon:2735;Parent=Msa1273330-mRNA-1 |
| chr8_3 | exon | 7067608 | 7067898 | 7067608 | ID=Msa1273330-mRNA-1:exon:2736;Parent=Msa1273330-mRNA-1 |
| chr8_3 | exon | 7067976 | 7068089 | 7067976 | ID=Msa1273330-mRNA-1:exon:2737;Parent=Msa1273330-mRNA-1 |
| chr8_3 | exon | 7070004 | 7071249 | 7070004 | ID=Msa1273330-mRNA-1:exon:2738;Parent=Msa1273330-mRNA-1 |
| chr8_3 | CDS | 7066553 | 7066861 | 7066553 | ID=Msa1273330-mRNA-1:cds;Parent=Msa1273330-mRNA-1 |
| chr8_3 | CDS | 7067608 | 7067898 | 7067608 | ID=Msa1273330-mRNA-1:cds;Parent=Msa1273330-mRNA-1 |
| chr8_3 | CDS | 7067976 | 7068089 | 7067976 | ID=Msa1273330-mRNA-1:cds;Parent=Msa1273330-mRNA-1 |
| chr8_3 | CDS | 7070004 | 7070639 | 7070004 | ID=Msa1273330-mRNA-1:cds;Parent=Msa1273330-mRNA-1 |
| chr8_3 | three_prime_UTR | 7070640 | 7071249 | 7070640 | ID=Msa1273330-mRNA-1:three_prime_utr;Parent=Msa1273330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
