AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1214320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1214320 MtrunA17_Chr4g0062811 98.792 414 5 0 1 414 1 414 0.0 849
Msa1214320 MtrunA17_Chr2g0306391 78.520 419 81 5 1 414 1 415 0.0 660
Msa1214320 MtrunA17_Chr3g0132041 53.025 281 124 4 126 398 103 383 2.23e-103 311
Msa1214320 MtrunA17_Chr7g0235761 46.179 301 140 6 119 398 67 366 4.01e-84 261
Msa1214320 MtrunA17_Chr1g0208941 43.631 314 118 4 119 398 75 363 3.46e-81 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1214320 AT1G08510.1 74.010 404 97 3 1 398 1 402 0.0 609
Msa1214320 AT3G25110.1 48.814 295 135 7 119 399 68 360 3.93e-90 277
Msa1214320 AT4G13050.1 46.667 300 134 7 121 398 69 364 1.90e-87 270

Find 175 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGACTTCTTCCGGAATTT+TGG 0.170299 8_1:+74849376 None:intergenic
ATTTAATTGTTTGATTAAAA+TGG 0.175992 8_1:-74847631 Msa1214320:three_prime_UTR
CCCTGTTACTTCATCCTTGC+CGG 0.219883 8_1:-74850935 Msa1214320:CDS
TCTATCAGATCGTATGAAAT+TGG 0.224730 8_1:-74850544 Msa1214320:CDS
CTGTCATCTTCTTCCAGAAT+TGG 0.234599 8_1:+74849320 None:intergenic
ACGTCCCACATGGGAATTAT+TGG 0.238051 8_1:-74847454 Msa1214320:three_prime_UTR
ACCAGAAAATAAATGAAATT+TGG 0.239522 8_1:+74847684 None:intergenic
TGTGGAATCTGCACCAATTC+TGG 0.245449 8_1:-74849333 Msa1214320:CDS
TTGGAGTAGTGATTGATTAT+AGG 0.248424 8_1:+74852385 None:intergenic
ATGATTCATTATTGTATCTA+TGG 0.249215 8_1:+74850504 None:intergenic
TATTATTATAACATGCTTAA+AGG 0.258827 8_1:+74847413 None:intergenic
CCACTTTGATATTGTGAATC+AGG 0.261585 8_1:-74847936 Msa1214320:CDS
AAGAAAATTGCATCTTTAGA+AGG 0.262385 8_1:+74847572 None:intergenic
CATGCCCCTCCCAAGATTAA+TGG 0.282466 8_1:-74850817 Msa1214320:CDS
ATCAAAGTGGTTCACAGGTT+TGG 0.283485 8_1:+74847949 None:intergenic
GTTAAAACTGCGGGGCTTCT+TGG 0.293306 8_1:-74850319 Msa1214320:CDS
GTGTTGCTTTGGTGCGTAAA+AGG 0.296067 8_1:-74847768 Msa1214320:three_prime_UTR
GACTCTGGTGGCAACAAAAT+TGG 0.296666 8_1:-74850913 Msa1214320:CDS
TCAAAGTGGTTCACAGGTTT+GGG 0.298152 8_1:+74847950 None:intergenic
GGAAATGAGATTATTTAAAC+AGG 0.315443 8_1:+74852318 None:intergenic
AACTTTGGTTCCATTAATCT+TGG 0.321274 8_1:+74850807 None:intergenic
CCTTCTAATTTGTGTTGCTT+TGG 0.321827 8_1:-74847779 Msa1214320:three_prime_UTR
TGGAGTAGTGATTGATTATA+GGG 0.334581 8_1:+74852386 None:intergenic
TGGTATAGGCAAAATTGTTC+AGG 0.344538 8_1:-74850593 Msa1214320:CDS
ATCTCTCCTCTGACTTCTTC+CGG 0.345295 8_1:+74849368 None:intergenic
GAAGTACATTGGCTGGATTC+TGG 0.345569 8_1:-74849096 Msa1214320:CDS
GTCTGTGCTTTCAGCCTAGA+TGG 0.356485 8_1:-74849154 Msa1214320:intron
GGGCTTCTTGGTGATGGCTT+TGG 0.357333 8_1:-74850307 Msa1214320:CDS
GCTAATTACAATGAGATATA+TGG 0.358437 8_1:+74847735 None:intergenic
TACAATAATGAATCATTTGC+AGG 0.359879 8_1:-74850497 Msa1214320:intron
CAGAAAGCTGTCCAAAATTC+CGG 0.364635 8_1:-74849387 Msa1214320:CDS
CAGCATCAGATACAGAAGTT+AGG 0.369505 8_1:+74848071 None:intergenic
GAAACTTGGGTTTCTGCATC+AGG 0.376424 8_1:-74849903 Msa1214320:CDS
TCTCTTCCCTAGGGTTAAAC+TGG 0.377506 8_1:-74847859 Msa1214320:three_prime_UTR
GTGCTATGACTTTGGAGTAT+AGG 0.377990 8_1:-74848126 Msa1214320:CDS
CATTTGCTTCGACTTGAAGA+TGG 0.382701 8_1:-74848007 Msa1214320:CDS
TGTTGCTTTGGTGCGTAAAA+GGG 0.382744 8_1:-74847767 Msa1214320:three_prime_UTR
TGAGCTTTGTGCTATGACTT+TGG 0.385914 8_1:-74848134 Msa1214320:CDS
TTTCGTGATCGACAGTGTTT+GGG 0.391693 8_1:-74849429 Msa1214320:intron
TCCGGCAAGGATGAAGTAAC+AGG 0.392133 8_1:+74850934 None:intergenic
GAAGAAGTCAGAGGAGAGAT+AGG 0.399585 8_1:-74849365 Msa1214320:CDS
CCAAAGCAACACAAATTAGA+AGG 0.409398 8_1:+74847779 None:intergenic
AAACCTTAGGTGCTTCCTGC+TGG 0.412033 8_1:+74847911 None:intergenic
GGTGGGAATGCGAACCTTGG+AGG 0.413247 8_1:-74850889 Msa1214320:CDS
GGAAGAAGATGACAGAAAAC+TGG 0.423587 8_1:-74849312 Msa1214320:CDS
TTCTACAGATGTAGAAACTT+TGG 0.428061 8_1:+74850792 None:intergenic
ATAATAACGTGTTCAGTTCA+AGG 0.429745 8_1:-74847220 Msa1214320:three_prime_UTR
ATTAATCTTGGGAGGGGCAT+GGG 0.432092 8_1:+74850819 None:intergenic
GACATGCTGATTGACCCTTT+TGG 0.434816 8_1:-74850613 Msa1214320:CDS
CGTCCCACATGGGAATTATT+GGG 0.436232 8_1:-74847453 Msa1214320:three_prime_UTR
TTTCTGGTTGCTATAGTGCT+AGG 0.437871 8_1:-74847669 Msa1214320:three_prime_UTR
GCATGCTCCAGTCAGGTAAC+TGG 0.441878 8_1:+74850713 None:intergenic
GGTTCCATTAATCTTGGGAG+GGG 0.445528 8_1:+74850813 None:intergenic
CATTAATCTTGGGAGGGGCA+TGG 0.448502 8_1:+74850818 None:intergenic
GCAAATGCTGGCACTCAATC+CGG 0.451066 8_1:+74848023 None:intergenic
ACTTCATCCTTGCCGGACTC+TGG 0.452399 8_1:-74850928 Msa1214320:CDS
CTTAATCATGTTAAAACTGC+GGG 0.456249 8_1:-74850328 Msa1214320:CDS
ACTTTGGTTCCATTAATCTT+GGG 0.456944 8_1:+74850808 None:intergenic
TGCCGTCGTCGCAATCCTCT+AGG 0.464686 8_1:-74850747 Msa1214320:CDS
CTAACTTCTGTATCTGATGC+TGG 0.466418 8_1:-74848070 Msa1214320:CDS
ATCGAGAATGAGAAGAAGGA+AGG 0.473005 8_1:+74852213 None:intergenic
ATTTGCTTCGACTTGAAGAT+GGG 0.475110 8_1:-74848006 Msa1214320:CDS
TATAACATGCTTAAAGGAGA+AGG 0.476987 8_1:+74847419 None:intergenic
ATATTATAAGACATGTAGAT+TGG 0.477574 8_1:+74847803 None:intergenic
GCAAGAAGCATGCTCCAGTC+AGG 0.478605 8_1:+74850706 None:intergenic
ACAATGTGAAGTACATTGGC+TGG 0.478806 8_1:-74849103 Msa1214320:CDS
GTTTCTGCATCAGGCAAGAA+TGG 0.481956 8_1:-74849894 Msa1214320:CDS
ATGTTGTTCATGTAGAAACT+TGG 0.487017 8_1:-74849917 Msa1214320:CDS
TGGTTGCTATAGTGCTAGGC+TGG 0.490240 8_1:-74847665 Msa1214320:three_prime_UTR
AGCATCAGATACAGAAGTTA+GGG 0.491194 8_1:+74848072 None:intergenic
GGTTGATGTTCTTTGCCGCT+TGG 0.491363 8_1:-74847250 Msa1214320:three_prime_UTR
GTATACAATCACAGTTGTAT+TGG 0.492198 8_1:+74847497 None:intergenic
ACAATATCAAAGTGGTTCAC+AGG 0.493409 8_1:+74847944 None:intergenic
AACAGTGGATGATGCTCGAT+TGG 0.493658 8_1:-74850651 Msa1214320:CDS
GCAGAGAGATAGAGTAGAGC+AGG 0.497228 8_1:+74847711 None:intergenic
ACTGCGGGGCTTCTTGGTGA+TGG 0.497472 8_1:-74850313 Msa1214320:CDS
AGAAAATTGCATCTTTAGAA+GGG 0.502651 8_1:+74847573 None:intergenic
AGAATGGTATGCGTCGTGAT+TGG 0.502971 8_1:-74849878 Msa1214320:CDS
ACATCTAGATCACTCCATCT+AGG 0.503730 8_1:+74849140 None:intergenic
GTTCCAGCAGGAAGCACCTA+AGG 0.506583 8_1:-74847914 Msa1214320:exon
TCGAGAATGAGAAGAAGGAA+GGG 0.507050 8_1:+74852214 None:intergenic
ATTGGACTATGGTGTTGGAT+TGG 0.509250 8_1:+74852366 None:intergenic
GTGGGAATGCGAACCTTGGA+GGG 0.511900 8_1:-74850888 Msa1214320:CDS
TGCCATGTCTAGGATATATG+TGG 0.513209 8_1:-74847374 Msa1214320:three_prime_UTR
GTCCTAGAGGATTGCGACGA+CGG 0.514658 8_1:+74850745 None:intergenic
AGAAATCGAGAATGAGAAGA+AGG 0.515121 8_1:+74852209 None:intergenic
GTGAAATCAGAGGAAGAAGA+AGG 0.517956 8_1:+74852240 None:intergenic
ATCAGAGGAAGAAGAAGGAA+AGG 0.518581 8_1:+74852245 None:intergenic
GTAATCTAGCTCAAAGCGGC+CGG 0.520723 8_1:-74848042 Msa1214320:CDS
CTTTCTTCTCTTCTTCACTC+TGG 0.520960 8_1:-74852172 Msa1214320:intron
TTATCAACCAGTTACCTGAC+TGG 0.521390 8_1:-74850720 Msa1214320:CDS
AAATCTAAACATGCGTCTGC+GGG 0.521491 8_1:-74850862 Msa1214320:CDS
CTATGACTTTGGAGTATAGG+AGG 0.523086 8_1:-74848123 Msa1214320:CDS
CATGAACCATTCAAAACCTT+AGG 0.524151 8_1:+74847898 None:intergenic
GTTAGAACCAGTTTAACCCT+AGG 0.525979 8_1:+74847852 None:intergenic
ATCATATCAGTCTCTTCCCT+AGG 0.526127 8_1:-74847869 Msa1214320:three_prime_UTR
TTTGTCTCATCTAAAGTGAA+GGG 0.529235 8_1:-74847187 Msa1214320:three_prime_UTR
ATTGTTTGATTAAAATGGCT+AGG 0.529717 8_1:-74847626 Msa1214320:three_prime_UTR
CTTCAAGTCGAAGCAAATGC+TGG 0.533924 8_1:+74848011 None:intergenic
TGGTTCCATTAATCTTGGGA+GGG 0.538281 8_1:+74850812 None:intergenic
ATTTGTCTCATCTAAAGTGA+AGG 0.539866 8_1:-74847188 Msa1214320:three_prime_UTR
TGTTGTTCATGTAGAAACTT+GGG 0.541342 8_1:-74849916 Msa1214320:CDS
ACAGCGGATTATATCCGCTC+GGG 0.549430 8_1:-74849272 Msa1214320:CDS
TTGGTTCCATTAATCTTGGG+AGG 0.550365 8_1:+74850811 None:intergenic
GTCTGCGGGCTTGCAAGTAA+AGG 0.550821 8_1:-74850848 Msa1214320:CDS
GGAAGGGAAGGTGAAATCAG+AGG 0.552484 8_1:+74852230 None:intergenic
CAGATACAGAAGTTAGGGAC+TGG 0.555844 8_1:+74848077 None:intergenic
TAAATCTAAACATGCGTCTG+CGG 0.556057 8_1:-74850863 Msa1214320:CDS
GCCATGTCTAGGATATATGT+GGG 0.557762 8_1:-74847373 Msa1214320:three_prime_UTR
ATAACATGCTTAAAGGAGAA+GGG 0.557867 8_1:+74847420 None:intergenic
GGTGGCAACAAAATTGGTGG+TGG 0.558849 8_1:-74850907 Msa1214320:CDS
TTGTGAGGGGTAGAACTAAG+TGG 0.561099 8_1:-74847976 Msa1214320:CDS
AAATCTTGACGAGAGCCTCC+AGG 0.565088 8_1:-74849830 Msa1214320:intron
GAATGAGAAGAAGGAAGGGA+AGG 0.566032 8_1:+74852218 None:intergenic
TGCTCGATTGGAAGCCAAGA+CGG 0.569855 8_1:-74850639 Msa1214320:CDS
TCTGTATCTGATGCTGGTGT+TGG 0.570023 8_1:-74848064 Msa1214320:CDS
GTTGCTTTGGTGCGTAAAAG+GGG 0.571711 8_1:-74847766 Msa1214320:three_prime_UTR
TGAAATTGGTGCGGATCGAA+CGG 0.573921 8_1:-74850530 Msa1214320:CDS
GGTGGTGGGAATGCGAACCT+TGG 0.574054 8_1:-74850892 Msa1214320:CDS
ATCAGCATGTCAGACCGTCT+TGG 0.574490 8_1:+74850625 None:intergenic
ATGTATACAAACGTCCCACA+TGG 0.576326 8_1:-74847464 Msa1214320:three_prime_UTR
AGACACGATAGCACATGTAA+AGG 0.578428 8_1:+74847348 None:intergenic
CACAGCGGATTATATCCGCT+CGG 0.579496 8_1:-74849273 Msa1214320:CDS
CATAGGTACCAAGCAAAATG+TGG 0.584997 8_1:+74847322 None:intergenic
GTTTAGATTTAAGCCCTCCA+AGG 0.590994 8_1:+74850875 None:intergenic
TCATCCTTGCCGGACTCTGG+TGG 0.592944 8_1:-74850925 Msa1214320:CDS
ATTGTGAATCAGGTTCCAGC+AGG 0.595303 8_1:-74847926 Msa1214320:CDS
TCAGAGGAAGAAGAAGGAAA+GGG 0.596772 8_1:+74852246 None:intergenic
TTAGAACCAGTTTAACCCTA+GGG 0.601322 8_1:+74847853 None:intergenic
AAAATAGAATCTCATTATGG+TGG 0.602507 8_1:-74850977 Msa1214320:exon
ACGTTTGTATACATACAAGC+TGG 0.609142 8_1:+74847473 None:intergenic
TCATATCAGTCTCTTCCCTA+GGG 0.611662 8_1:-74847868 Msa1214320:three_prime_UTR
TCTGGTGGCAACAAAATTGG+TGG 0.617307 8_1:-74850910 Msa1214320:CDS
TGCTTTGGTGCGTAAAAGGG+GGG 0.617854 8_1:-74847764 Msa1214320:three_prime_UTR
GTTAACAATGTGAAGTACAT+TGG 0.619008 8_1:-74849107 Msa1214320:CDS
CCCCACATATATCCTAGACA+TGG 0.620563 8_1:+74847372 None:intergenic
AGATGGGGCTGAAATTGTGA+GGG 0.620618 8_1:-74847990 Msa1214320:CDS
TTGTCTCATCTAAAGTGAAG+GGG 0.621484 8_1:-74847186 Msa1214320:three_prime_UTR
GAAATGAGATTATTTAAACA+GGG 0.622857 8_1:+74852319 None:intergenic
GTATAGGAGGGAGTGTGGCA+AGG 0.625777 8_1:-74848110 Msa1214320:CDS
CTGGTTGATAAAAGTCCTAG+AGG 0.628361 8_1:+74850732 None:intergenic
TTTGCTTCGACTTGAAGATG+GGG 0.629398 8_1:-74848005 Msa1214320:CDS
TTGGAGTATAGGAGGGAGTG+TGG 0.631407 8_1:-74848115 Msa1214320:CDS
CCTGATTCACAATATCAAAG+TGG 0.634270 8_1:+74847936 None:intergenic
CACAAAGCTCATGACTCTCG+AGG 0.634653 8_1:+74848146 None:intergenic
TGTAGAAAACTATAAGCATG+AGG 0.636729 8_1:-74850776 Msa1214320:CDS
TTTACGTGATTATAATACTG+GGG 0.636769 8_1:-74849853 Msa1214320:CDS
AAGATGGGGCTGAAATTGTG+AGG 0.638157 8_1:-74847991 Msa1214320:CDS
GTTGCCACCAGAGTCCGGCA+AGG 0.642093 8_1:+74850921 None:intergenic
TGCACCCAATAATTCCCATG+TGG 0.645028 8_1:+74847449 None:intergenic
GTGGCAACAAAATTGGTGGT+GGG 0.645115 8_1:-74850906 Msa1214320:CDS
ACACAAGCAAAACTCTTCAG+AGG 0.647990 8_1:+74847830 None:intergenic
ATAGGCAAAATTGTTCAGGA+TGG 0.648420 8_1:-74850589 Msa1214320:CDS
TTGCTTTGGTGCGTAAAAGG+GGG 0.650036 8_1:-74847765 Msa1214320:three_prime_UTR
TTGTTGATCGTTATCCTACG+TGG 0.650683 8_1:-74850225 Msa1214320:intron
GCACCCAATAATTCCCATGT+GGG 0.652186 8_1:+74847450 None:intergenic
CCATGTCTAGGATATATGTG+GGG 0.652456 8_1:-74847372 Msa1214320:three_prime_UTR
TGTATACAAACGTCCCACAT+GGG 0.658845 8_1:-74847463 Msa1214320:three_prime_UTR
ACTTAATATGGGTAGTTGCG+CGG 0.660135 8_1:-74850258 Msa1214320:CDS
CATGTCTAGGATATATGTGG+GGG 0.663903 8_1:-74847371 Msa1214320:three_prime_UTR
GTACATTGGCTGGATTCTGG+AGG 0.665676 8_1:-74849093 Msa1214320:intron
GTTATTATGCATGTACCAAG+CGG 0.668404 8_1:+74847235 None:intergenic
TATGACTTTGGAGTATAGGA+GGG 0.670410 8_1:-74848122 Msa1214320:CDS
ACTTAATCATGTTAAAACTG+CGG 0.670918 8_1:-74850329 Msa1214320:CDS
CCGGCAAGGATGAAGTAACA+GGG 0.676128 8_1:+74850935 None:intergenic
AAAATTCCGGAAGAAGTCAG+AGG 0.678251 8_1:-74849374 Msa1214320:CDS
TTAATCATGTTAAAACTGCG+GGG 0.691366 8_1:-74850327 Msa1214320:CDS
GATGGGGCTGAAATTGTGAG+GGG 0.696909 8_1:-74847989 Msa1214320:CDS
TGACTCTCGAGGATTGACTG+TGG 0.701079 8_1:+74848157 None:intergenic
TGAGGGGTAGAACTAAGTGG+AGG 0.718786 8_1:-74847973 Msa1214320:CDS
CAGATCGTATGAAATTGGTG+CGG 0.718974 8_1:-74850539 Msa1214320:CDS
GACATACACTTAAACCCGAG+CGG 0.720447 8_1:+74849258 None:intergenic
GTTGGTAATCTAGCTCAAAG+CGG 0.743042 8_1:-74848046 Msa1214320:CDS
GTATGGATGACTTACCACGT+AGG 0.760670 8_1:+74850211 None:intergenic
TAAACTTGATGACAGCACAG+CGG 0.795237 8_1:-74849288 Msa1214320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATGAATCTTTATTTA+TGG - chr8_1:74849106-74849125 Msa1214320:CDS 10.0%
!! AAATTAAATAAAATTCTTGA+TGG - chr8_1:74850596-74850615 Msa1214320:CDS 10.0%
!! ATTTAATTGTTTGATTAAAA+TGG - chr8_1:74851947-74851966 Msa1214320:intron 10.0%
!!! GTATTTTTTTGGAAAAAAAT+TGG + chr8_1:74847233-74847252 None:intergenic 15.0%
!! AAATTCTAGATAATCTAAAA+TGG + chr8_1:74847885-74847904 None:intergenic 15.0%
!!! TTTTTATTAGTATTGGAATT+AGG - chr8_1:74848117-74848136 Msa1214320:CDS 15.0%
!! TAAAAAATAGAATCTCATTA+TGG - chr8_1:74848598-74848617 Msa1214320:intron 15.0%
!!! TTATTCTACAGATTTTAATA+TGG + chr8_1:74850022-74850041 None:intergenic 15.0%
!! TACTAACATTATATTGTTTA+GGG - chr8_1:74850834-74850853 Msa1214320:CDS 15.0%
!! AATATGTGACTAATTAATTA+GGG + chr8_1:74851293-74851312 None:intergenic 15.0%
!!! ATATTATTATTCTTTTCTCT+TGG - chr8_1:74851982-74852001 Msa1214320:intron 15.0%
!! TATTATTATAACATGCTTAA+AGG + chr8_1:74852168-74852187 None:intergenic 15.0%
!! GAAATGAGATTATTTAAACA+GGG + chr8_1:74847262-74847281 None:intergenic 20.0%
!!! ATTGTGTAATTTTAGATCAT+AGG + chr8_1:74847310-74847329 None:intergenic 20.0%
!!! TTAATTTTGAAATTATCGAG+AGG - chr8_1:74847595-74847614 Msa1214320:three_prime_UTR 20.0%
!!! TTTTTACTTTTCTTGTTTTG+CGG - chr8_1:74847728-74847747 Msa1214320:three_prime_UTR 20.0%
!!! AGTTGTTATTTGTTTACTTT+TGG - chr8_1:74847781-74847800 Msa1214320:three_prime_UTR 20.0%
!! ATGATTCATTATTGTATCTA+TGG + chr8_1:74849077-74849096 None:intergenic 20.0%
!!! ACAATTATTTGTTTGATAAC+AGG - chr8_1:74849219-74849238 Msa1214320:intron 20.0%
!!! TAGTTGTTTTGATCTTTATA+AGG - chr8_1:74849450-74849469 Msa1214320:intron 20.0%
!!! TCAAGTATCTATATTTTTTC+AGG - chr8_1:74849634-74849653 Msa1214320:intron 20.0%
!!! CAAGTATCTATATTTTTTCA+GGG - chr8_1:74849635-74849654 Msa1214320:intron 20.0%
!!! AAGTATCTATATTTTTTCAG+GGG - chr8_1:74849636-74849655 Msa1214320:intron 20.0%
!!! TTTTACGTGATTATAATACT+GGG - chr8_1:74849724-74849743 Msa1214320:intron 20.0%
!! AGAGAAAAGACAAAAATAAT+TGG + chr8_1:74850542-74850561 None:intergenic 20.0%
!! GTACTAACATTATATTGTTT+AGG - chr8_1:74850833-74850852 Msa1214320:CDS 20.0%
!! AAATGAAACATGATATAACT+TGG - chr8_1:74851163-74851182 Msa1214320:intron 20.0%
!! ATATGTGACTAATTAATTAG+GGG + chr8_1:74851292-74851311 None:intergenic 20.0%
!! CAATATGTGACTAATTAATT+AGG + chr8_1:74851294-74851313 None:intergenic 20.0%
!! ATATTATAAGACATGTAGAT+TGG + chr8_1:74851778-74851797 None:intergenic 20.0%
!!! TCCAAATTTCATTTATTTTC+TGG - chr8_1:74851893-74851912 Msa1214320:intron 20.0%
!! ACCAGAAAATAAATGAAATT+TGG + chr8_1:74851897-74851916 None:intergenic 20.0%
!!! TTTTGTTGGACTTAAAAAAA+AGG - chr8_1:74852300-74852319 Msa1214320:five_prime_UTR 20.0%
! TTTGGAAAAAAATTGGACTA+TGG + chr8_1:74847226-74847245 None:intergenic 25.0%
! GGAAATGAGATTATTTAAAC+AGG + chr8_1:74847263-74847282 None:intergenic 25.0%
!!! TCTCTTCTTTTCTTAATTTG+TGG + chr8_1:74847284-74847303 None:intergenic 25.0%
!! TAAATTTGAAAAGCACGTTA+AGG + chr8_1:74847469-74847488 None:intergenic 25.0%
! GATGAAAAATGCAGAAAAAA+CGG + chr8_1:74847539-74847558 None:intergenic 25.0%
! GCAAAACAAGAAAAGTAAAA+AGG + chr8_1:74847729-74847748 None:intergenic 25.0%
!! AGTGATAGTGAAAAAAACAA+AGG + chr8_1:74847920-74847939 None:intergenic 25.0%
!!! TTTGTTTTTTTCACTATCAC+TGG - chr8_1:74847919-74847938 Msa1214320:CDS 25.0%
!!! TTGTTTTTTTCACTATCACT+GGG - chr8_1:74847920-74847939 Msa1214320:CDS 25.0%
! CAGAAGTTGCAAATATTATA+TGG - chr8_1:74848066-74848085 Msa1214320:CDS 25.0%
!! TGAGAGAAAAGGTATAATAA+AGG + chr8_1:74848147-74848166 None:intergenic 25.0%
!! TTATACCTTTTCTCTCATTT+AGG - chr8_1:74848150-74848169 Msa1214320:CDS 25.0%
! TACAAAGAGAAACATAAGTT+TGG + chr8_1:74848447-74848466 None:intergenic 25.0%
!!! ATGTTGCTATTGTTTGTTAT+TGG - chr8_1:74848490-74848509 Msa1214320:intron 25.0%
!!! TGTTGCTATTGTTTGTTATT+GGG - chr8_1:74848491-74848510 Msa1214320:intron 25.0%
! AAAATAGAATCTCATTATGG+TGG - chr8_1:74848601-74848620 Msa1214320:intron 25.0%
! TACAATAATGAATCATTTGC+AGG - chr8_1:74849081-74849100 Msa1214320:intron 25.0%
!! GAATCTTTATTTATGGTCTT+AGG - chr8_1:74849113-74849132 Msa1214320:CDS 25.0%
! ACTTAATCATGTTAAAACTG+CGG - chr8_1:74849249-74849268 Msa1214320:intron 25.0%
! TGTGCAAAAAGAACTTAATA+TGG - chr8_1:74849308-74849327 Msa1214320:CDS 25.0%
! GTGCAAAAAGAACTTAATAT+GGG - chr8_1:74849309-74849328 Msa1214320:CDS 25.0%
!!! GTTTTGATCTTTATAAGGAA+TGG - chr8_1:74849455-74849474 Msa1214320:intron 25.0%
! AAGTTAGATAATCTGTTATG+TGG - chr8_1:74849574-74849593 Msa1214320:intron 25.0%
!! CTTTTACGTGATTATAATAC+TGG - chr8_1:74849723-74849742 Msa1214320:intron 25.0%
! TTTACGTGATTATAATACTG+GGG - chr8_1:74849725-74849744 Msa1214320:intron 25.0%
! TTTCAAAACAAGTTTATTGC+TGG + chr8_1:74849817-74849836 None:intergenic 25.0%
!!! AGCAATAAACTTGTTTTGAA+AGG - chr8_1:74849816-74849835 Msa1214320:intron 25.0%
!!! CATCTATCATTTTTTGATCT+TGG - chr8_1:74850119-74850138 Msa1214320:intron 25.0%
! ATACCAATAACAACAAAGAA+TGG + chr8_1:74850345-74850364 None:intergenic 25.0%
! ACACAGTATGTAATCTAATT+AGG + chr8_1:74850406-74850425 None:intergenic 25.0%
!!! ATCATAATTTGACTAGCTTA+AGG - chr8_1:74850633-74850652 Msa1214320:CDS 25.0%
! TAACATTATATTGTTTAGGG+TGG - chr8_1:74850837-74850856 Msa1214320:CDS 25.0%
!! AACATTATATTGTTTAGGGT+GGG - chr8_1:74850838-74850857 Msa1214320:CDS 25.0%
! GCTGATGAAAATTATTGATA+TGG - chr8_1:74850762-74850781 Msa1214320:CDS 25.0%
! TTAGAAAAGAACTTTATCGT+AGG + chr8_1:74850927-74850946 None:intergenic 25.0%
!!! ATCTTAGACTTTGAGATATA+AGG + chr8_1:74851053-74851072 None:intergenic 25.0%
!!! AAGTATTTTATTTGCCATAG+TGG - chr8_1:74851074-74851093 Msa1214320:intron 25.0%
! TTACAGAAAGTTAAACAACA+CGG - chr8_1:74851230-74851249 Msa1214320:intron 25.0%
! TATGTGACTAATTAATTAGG+GGG + chr8_1:74851291-74851310 None:intergenic 25.0%
!!! TTAGTCACATATTGATTTCT+TGG - chr8_1:74851300-74851319 Msa1214320:intron 25.0%
!!! TTGTTTAGTTTGTTATGTGA+TGG - chr8_1:74851340-74851359 Msa1214320:intron 25.0%
!!! TGTTTAGTTTGTTATGTGAT+GGG - chr8_1:74851341-74851360 Msa1214320:intron 25.0%
! GCTAATTACAATGAGATATA+TGG + chr8_1:74851846-74851865 None:intergenic 25.0%
! ATTGTTTGATTAAAATGGCT+AGG - chr8_1:74851952-74851971 Msa1214320:intron 25.0%
!! AGAAAATTGCATCTTTAGAA+GGG + chr8_1:74852008-74852027 None:intergenic 25.0%
! AAGAAAATTGCATCTTTAGA+AGG + chr8_1:74852009-74852028 None:intergenic 25.0%
! GGACTTAAAAAAAAGGTTTA+AGG - chr8_1:74852307-74852326 Msa1214320:five_prime_UTR 25.0%
TGGAGTAGTGATTGATTATA+GGG + chr8_1:74847195-74847214 None:intergenic 30.0%
TTGGAGTAGTGATTGATTAT+AGG + chr8_1:74847196-74847215 None:intergenic 30.0%
AAAAAATTGGACTATGGTGT+TGG + chr8_1:74847220-74847239 None:intergenic 30.0%
!!! CAGGGTGTATAGTATTTTTT+TGG + chr8_1:74847244-74847263 None:intergenic 30.0%
!!! ATTTTGAAATTATCGAGAGG+TGG - chr8_1:74847598-74847617 Msa1214320:three_prime_UTR 30.0%
TCCAAAGGAAAATTGTAGAA+CGG + chr8_1:74847842-74847861 None:intergenic 30.0%
! GATACGTTTTTACTCAAAGT+GGG + chr8_1:74847952-74847971 None:intergenic 30.0%
! TGATACGTTTTTACTCAAAG+TGG + chr8_1:74847953-74847972 None:intergenic 30.0%
!! TTTGTTCTCCTTTGAAATTG+AGG - chr8_1:74848021-74848040 Msa1214320:CDS 30.0%
TTAAGCTACTTATCCAAACA+AGG + chr8_1:74848176-74848195 None:intergenic 30.0%
!!! CTGTTTTTATGAGCTAATCT+TGG - chr8_1:74848306-74848325 Msa1214320:intron 30.0%
GGGTGAAATATGATTATGTA+TGG - chr8_1:74848511-74848530 Msa1214320:intron 30.0%
!!! GGCGTTGATACATTTTTTTT+AGG - chr8_1:74848532-74848551 Msa1214320:intron 30.0%
! ACTTTGGTTCCATTAATCTT+GGG + chr8_1:74848773-74848792 None:intergenic 30.0%
! AACTTTGGTTCCATTAATCT+TGG + chr8_1:74848774-74848793 None:intergenic 30.0%
TTCTACAGATGTAGAAACTT+TGG + chr8_1:74848789-74848808 None:intergenic 30.0%
TGTAGAAAACTATAAGCATG+AGG - chr8_1:74848802-74848821 Msa1214320:intron 30.0%
! TGCTATAACAACGATTTTCT+TGG - chr8_1:74848895-74848914 Msa1214320:intron 30.0%
! CAATTTTGCCTATACCAAAA+GGG + chr8_1:74848982-74849001 None:intergenic 30.0%
! ACAATTTTGCCTATACCAAA+AGG + chr8_1:74848983-74849002 None:intergenic 30.0%
TCTATCAGATCGTATGAAAT+TGG - chr8_1:74849034-74849053 Msa1214320:intron 30.0%
! TAGGAGATAAAAAGTTGGTT+AGG - chr8_1:74849132-74849151 Msa1214320:CDS 30.0%
TATACATATAAGCTTGTACG+AGG + chr8_1:74849197-74849216 None:intergenic 30.0%
CTTAATCATGTTAAAACTGC+GGG - chr8_1:74849250-74849269 Msa1214320:intron 30.0%
TTAATCATGTTAAAACTGCG+GGG - chr8_1:74849251-74849270 Msa1214320:intron 30.0%
! AAGTTCTTTTTGCACATTTC+AGG + chr8_1:74849304-74849323 None:intergenic 30.0%
AACTGCTAAATAAATGCAGA+AGG + chr8_1:74849512-74849531 None:intergenic 30.0%
ATGTTGTTCATGTAGAAACT+TGG - chr8_1:74849661-74849680 Msa1214320:intron 30.0%
TGTTGTTCATGTAGAAACTT+GGG - chr8_1:74849662-74849681 Msa1214320:intron 30.0%
TTCATTACTAAGTATAAGCC+CGG - chr8_1:74850057-74850076 Msa1214320:intron 30.0%
!!! CTATCATTTTTTGATCTTGG+TGG - chr8_1:74850122-74850141 Msa1214320:intron 30.0%
!!! AGAGATAGGTTCTTATTTTG+TGG - chr8_1:74850227-74850246 Msa1214320:CDS 30.0%
!! TGTCCATTCTTTGTTGTTAT+TGG - chr8_1:74850339-74850358 Msa1214320:CDS 30.0%
TAATTAGGAAACAGCATCTA+GGG + chr8_1:74850391-74850410 None:intergenic 30.0%
GTTAACAATGTGAAGTACAT+TGG - chr8_1:74850471-74850490 Msa1214320:intron 30.0%
!!! GACTAAAGACTAGGTTTTTT+TGG + chr8_1:74850699-74850718 None:intergenic 30.0%
! ATCAATAATTTTCATCAGCC+TGG + chr8_1:74850761-74850780 None:intergenic 30.0%
AGTTTCATTAGTGTTGTGTT+CGG - chr8_1:74850959-74850978 Msa1214320:CDS 30.0%
!! TAGACTTTGAGATATAAGGT+GGG + chr8_1:74851049-74851068 None:intergenic 30.0%
!! TTAGACTTTGAGATATAAGG+TGG + chr8_1:74851050-74851069 None:intergenic 30.0%
TGAAACATGATATAACTTGG+TGG - chr8_1:74851166-74851185 Msa1214320:intron 30.0%
GTATACAATCACAGTTGTAT+TGG + chr8_1:74852084-74852103 None:intergenic 30.0%
ATAACATGCTTAAAGGAGAA+GGG + chr8_1:74852161-74852180 None:intergenic 30.0%
TATAACATGCTTAAAGGAGA+AGG + chr8_1:74852162-74852181 None:intergenic 30.0%
! TATCTTTTAATGCCATGTCT+AGG - chr8_1:74852194-74852213 Msa1214320:five_prime_UTR 30.0%
ATAATAACGTGTTCAGTTCA+AGG - chr8_1:74852358-74852377 Msa1214320:five_prime_UTR 30.0%
! ATTTGTCTCATCTAAAGTGA+AGG - chr8_1:74852390-74852409 Msa1214320:five_prime_UTR 30.0%
! TTTGTCTCATCTAAAGTGAA+GGG - chr8_1:74852391-74852410 Msa1214320:five_prime_UTR 30.0%
AGAAATCGAGAATGAGAAGA+AGG + chr8_1:74847372-74847391 None:intergenic 35.0%
! TTTGCGGTGTTTTCTAGATT+CGG - chr8_1:74847744-74847763 Msa1214320:three_prime_UTR 35.0%
! TCCGTTCTACAATTTTCCTT+TGG - chr8_1:74847838-74847857 Msa1214320:three_prime_UTR 35.0%
! TCATTTTCTCACGTTTCCAA+AGG + chr8_1:74847857-74847876 None:intergenic 35.0%
CTAGTGAACCTCAATTTCAA+AGG + chr8_1:74848032-74848051 None:intergenic 35.0%
!! GTAGCTTAATTTGCAGCTTA+TGG - chr8_1:74848187-74848206 Msa1214320:intron 35.0%
!!! TATTTTTTACAGCAGCTGCA+TGG + chr8_1:74848587-74848606 None:intergenic 35.0%
TAAATCTAAACATGCGTCTG+CGG - chr8_1:74848715-74848734 Msa1214320:intron 35.0%
TGGTATAGGCAAAATTGTTC+AGG - chr8_1:74848985-74849004 Msa1214320:intron 35.0%
ATAGGCAAAATTGTTCAGGA+TGG - chr8_1:74848989-74849008 Msa1214320:intron 35.0%
GGTCTTAGGAGATAAAAAGT+TGG - chr8_1:74849127-74849146 Msa1214320:CDS 35.0%
CATACAACAAGTGATGAGTA+TGG + chr8_1:74849387-74849406 None:intergenic 35.0%
CAAAACAACTAGCAGAGAAA+TGG + chr8_1:74849441-74849460 None:intergenic 35.0%
! TGTACCTTGTTTATCAGAGT+TGG - chr8_1:74849534-74849553 Msa1214320:intron 35.0%
! ACGACTTCATAAAAGTGTGT+AGG + chr8_1:74849883-74849902 None:intergenic 35.0%
AACGTGTGATTTATATGCAC+CGG + chr8_1:74850079-74850098 None:intergenic 35.0%
!!! TCATTTTTTGATCTTGGTGG+TGG - chr8_1:74850125-74850144 Msa1214320:intron 35.0%
CTAATTAGGAAACAGCATCT+AGG + chr8_1:74850392-74850411 None:intergenic 35.0%
TCAAGATATTTGTCCGTGAA+AGG + chr8_1:74850567-74850586 None:intergenic 35.0%
!!! AAGACTAGGTTTTTTTGGTG+AGG + chr8_1:74850694-74850713 None:intergenic 35.0%
! AAACCTAGTCTTTAGTCTGT+TGG - chr8_1:74850702-74850721 Msa1214320:CDS 35.0%
! AACCTAGTCTTTAGTCTGTT+GGG - chr8_1:74850703-74850722 Msa1214320:CDS 35.0%
GTCTTTAGTCTGCAAAGTAA+GGG - chr8_1:74850725-74850744 Msa1214320:CDS 35.0%
! TGGTAATGATACTAGAGAGA+GGG + chr8_1:74850871-74850890 None:intergenic 35.0%
TCAAATGTCAATGACCACTA+TGG + chr8_1:74851091-74851110 None:intergenic 35.0%
! ATCTGGGATTCTTAACCAAA+GGG - chr8_1:74851372-74851391 Msa1214320:intron 35.0%
AAAATCAAAACACAGCCCTT+TGG + chr8_1:74851390-74851409 None:intergenic 35.0%
!! TATGACTTTGGAGTATAGGA+GGG - chr8_1:74851456-74851475 Msa1214320:intron 35.0%
AGCATCAGATACAGAAGTTA+GGG + chr8_1:74851509-74851528 None:intergenic 35.0%
! ATTTGCTTCGACTTGAAGAT+GGG - chr8_1:74851572-74851591 Msa1214320:intron 35.0%
ACAATATCAAAGTGGTTCAC+AGG + chr8_1:74851637-74851656 None:intergenic 35.0%
CCTGATTCACAATATCAAAG+TGG + chr8_1:74851645-74851664 None:intergenic 35.0%
CCACTTTGATATTGTGAATC+AGG - chr8_1:74851642-74851661 Msa1214320:intron 35.0%
CATGAACCATTCAAAACCTT+AGG + chr8_1:74851683-74851702 None:intergenic 35.0%
!!! CTAAGGTTTTGAATGGTTCA+TGG - chr8_1:74851681-74851700 Msa1214320:intron 35.0%
TTAGAACCAGTTTAACCCTA+GGG + chr8_1:74851728-74851747 None:intergenic 35.0%
CCAAAGCAACACAAATTAGA+AGG + chr8_1:74851802-74851821 None:intergenic 35.0%
!! CCTTCTAATTTGTGTTGCTT+TGG - chr8_1:74851799-74851818 Msa1214320:intron 35.0%
ACGTTTGTATACATACAAGC+TGG + chr8_1:74852108-74852127 None:intergenic 35.0%
GTTATTATGCATGTACCAAG+CGG + chr8_1:74852346-74852365 None:intergenic 35.0%
! TTGTCTCATCTAAAGTGAAG+GGG - chr8_1:74852392-74852411 Msa1214320:five_prime_UTR 35.0%
! ATTGGACTATGGTGTTGGAT+TGG + chr8_1:74847215-74847234 None:intergenic 40.0%
TCAGAGGAAGAAGAAGGAAA+GGG + chr8_1:74847335-74847354 None:intergenic 40.0%
ATCAGAGGAAGAAGAAGGAA+AGG + chr8_1:74847336-74847355 None:intergenic 40.0%
GTGAAATCAGAGGAAGAAGA+AGG + chr8_1:74847341-74847360 None:intergenic 40.0%
TCGAGAATGAGAAGAAGGAA+GGG + chr8_1:74847367-74847386 None:intergenic 40.0%
ATCGAGAATGAGAAGAAGGA+AGG + chr8_1:74847368-74847387 None:intergenic 40.0%
CTTTCTTCTCTTCTTCACTC+TGG - chr8_1:74847406-74847425 Msa1214320:three_prime_UTR 40.0%
TAAGGTGAAGTGTAGATCAG+AGG + chr8_1:74847451-74847470 None:intergenic 40.0%
CAAGGCCTAAATGAGAGAAA+AGG + chr8_1:74848158-74848177 None:intergenic 40.0%
!! TCTCTCATTTAGGCCTTGTT+TGG - chr8_1:74848160-74848179 Msa1214320:CDS 40.0%
GAGCGCTAACAATACTGTTT+AGG + chr8_1:74848394-74848413 None:intergenic 40.0%
AGTAACAGGGAAAAAAGCAG+CGG + chr8_1:74848633-74848652 None:intergenic 40.0%
GTTTAGATTTAAGCCCTCCA+AGG + chr8_1:74848706-74848725 None:intergenic 40.0%
AAATCTAAACATGCGTCTGC+GGG - chr8_1:74848716-74848735 Msa1214320:intron 40.0%
TGGTTCCATTAATCTTGGGA+GGG + chr8_1:74848769-74848788 None:intergenic 40.0%
TTGGTTCCATTAATCTTGGG+AGG + chr8_1:74848770-74848789 None:intergenic 40.0%
!! CTGGTTGATAAAAGTCCTAG+AGG + chr8_1:74848849-74848868 None:intergenic 40.0%
TTATCAACCAGTTACCTGAC+TGG - chr8_1:74848858-74848877 Msa1214320:intron 40.0%
! CTGATTGACCCTTTTGGTAT+AGG - chr8_1:74848971-74848990 Msa1214320:intron 40.0%
CAGATCGTATGAAATTGGTG+CGG - chr8_1:74849039-74849058 Msa1214320:intron 40.0%
TCGTTGTGCAGAATAGATAG+TGG - chr8_1:74849168-74849187 Msa1214320:intron 40.0%
ACTTAATATGGGTAGTTGCG+CGG - chr8_1:74849320-74849339 Msa1214320:CDS 40.0%
TTGTTGATCGTTATCCTACG+TGG - chr8_1:74849353-74849372 Msa1214320:CDS 40.0%
GAAGCCAACTCTGATAAACA+AGG + chr8_1:74849541-74849560 None:intergenic 40.0%
! GTTTATCAGAGTTGGCTTCT+TGG - chr8_1:74849542-74849561 Msa1214320:intron 40.0%
AGAGAATGATTTCTACCTGG+AGG + chr8_1:74849766-74849785 None:intergenic 40.0%
TCCAGGTAGAAATCATTCTC+TGG - chr8_1:74849765-74849784 Msa1214320:intron 40.0%
TCCAGAGAATGATTTCTACC+TGG + chr8_1:74849769-74849788 None:intergenic 40.0%
! AGTTTATTGCTGGCTGCAAA+AGG + chr8_1:74849807-74849826 None:intergenic 40.0%
! GGTTTTCTGAATGTGCATGA+AGG - chr8_1:74849837-74849856 Msa1214320:CDS 40.0%
ACGTGTGATTTATATGCACC+GGG + chr8_1:74850078-74850097 None:intergenic 40.0%
! TTTTCGTGATCGACAGTGTT+TGG - chr8_1:74850148-74850167 Msa1214320:intron 40.0%
TTTCGTGATCGACAGTGTTT+GGG - chr8_1:74850149-74850168 Msa1214320:intron 40.0%
CAGAAAGCTGTCCAAAATTC+CGG - chr8_1:74850191-74850210 Msa1214320:intron 40.0%
! TCTGACTTCTTCCGGAATTT+TGG + chr8_1:74850205-74850224 None:intergenic 40.0%
AAAATTCCGGAAGAAGTCAG+AGG - chr8_1:74850204-74850223 Msa1214320:intron 40.0%
CTGTCATCTTCTTCCAGAAT+TGG + chr8_1:74850261-74850280 None:intergenic 40.0%
GGAAGAAGATGACAGAAAAC+TGG - chr8_1:74850266-74850285 Msa1214320:CDS 40.0%
! TAAACTTGATGACAGCACAG+CGG - chr8_1:74850290-74850309 Msa1214320:CDS 40.0%
ACATCTAGATCACTCCATCT+AGG + chr8_1:74850441-74850460 None:intergenic 40.0%
ACAATGTGAAGTACATTGGC+TGG - chr8_1:74850475-74850494 Msa1214320:intron 40.0%
! GTCTTTTCTCTCTCCTTTCA+CGG - chr8_1:74850551-74850570 Msa1214320:CDS 40.0%
!!! GACTAGCTTAAGGTCTTTTG+CGG - chr8_1:74850643-74850662 Msa1214320:CDS 40.0%
!! ACTAGCTTAAGGTCTTTTGC+GGG - chr8_1:74850644-74850663 Msa1214320:CDS 40.0%
GGTCTTTAGTCTGCAAAGTA+AGG - chr8_1:74850724-74850743 Msa1214320:CDS 40.0%
! CTGGTAATGATACTAGAGAG+AGG + chr8_1:74850872-74850891 None:intergenic 40.0%
CTCTCTCTAGTATCATTACC+AGG - chr8_1:74850870-74850889 Msa1214320:CDS 40.0%
ATTGACATTTGATGCCTCAC+AGG - chr8_1:74851099-74851118 Msa1214320:intron 40.0%
! CATCTGGGATTCTTAACCAA+AGG - chr8_1:74851371-74851390 Msa1214320:intron 40.0%
! TGAGCTTTGTGCTATGACTT+TGG - chr8_1:74851444-74851463 Msa1214320:intron 40.0%
!! GTGCTATGACTTTGGAGTAT+AGG - chr8_1:74851452-74851471 Msa1214320:intron 40.0%
!! CTATGACTTTGGAGTATAGG+AGG - chr8_1:74851455-74851474 Msa1214320:intron 40.0%
CAGCATCAGATACAGAAGTT+AGG + chr8_1:74851510-74851529 None:intergenic 40.0%
CTAACTTCTGTATCTGATGC+TGG - chr8_1:74851508-74851527 Msa1214320:intron 40.0%
!! GTTGGTAATCTAGCTCAAAG+CGG - chr8_1:74851532-74851551 Msa1214320:intron 40.0%
! CATTTGCTTCGACTTGAAGA+TGG - chr8_1:74851571-74851590 Msa1214320:intron 40.0%
! TTTGCTTCGACTTGAAGATG+GGG - chr8_1:74851573-74851592 Msa1214320:intron 40.0%
TCAAAGTGGTTCACAGGTTT+GGG + chr8_1:74851631-74851650 None:intergenic 40.0%
ATCAAAGTGGTTCACAGGTT+TGG + chr8_1:74851632-74851651 None:intergenic 40.0%
!!! GAAGCACCTAAGGTTTTGAA+TGG - chr8_1:74851674-74851693 Msa1214320:intron 40.0%
!!! GGTTTTGAATGGTTCATGGT+TGG - chr8_1:74851685-74851704 Msa1214320:intron 40.0%
ATCATATCAGTCTCTTCCCT+AGG - chr8_1:74851709-74851728 Msa1214320:intron 40.0%
TCATATCAGTCTCTTCCCTA+GGG - chr8_1:74851710-74851729 Msa1214320:intron 40.0%
GTTAGAACCAGTTTAACCCT+AGG + chr8_1:74851729-74851748 None:intergenic 40.0%
ACACAAGCAAAACTCTTCAG+AGG + chr8_1:74851751-74851770 None:intergenic 40.0%
!! TGTTGCTTTGGTGCGTAAAA+GGG - chr8_1:74851811-74851830 Msa1214320:intron 40.0%
!! TTTCTGGTTGCTATAGTGCT+AGG - chr8_1:74851909-74851928 Msa1214320:intron 40.0%
ATGTATACAAACGTCCCACA+TGG - chr8_1:74852114-74852133 Msa1214320:intron 40.0%
TGTATACAAACGTCCCACAT+GGG - chr8_1:74852115-74852134 Msa1214320:intron 40.0%
! TGCCATGTCTAGGATATATG+TGG - chr8_1:74852204-74852223 Msa1214320:five_prime_UTR 40.0%
! GCCATGTCTAGGATATATGT+GGG - chr8_1:74852205-74852224 Msa1214320:five_prime_UTR 40.0%
! CCATGTCTAGGATATATGTG+GGG - chr8_1:74852206-74852225 Msa1214320:five_prime_UTR 40.0%
! CATGTCTAGGATATATGTGG+GGG - chr8_1:74852207-74852226 Msa1214320:five_prime_UTR 40.0%
AGACACGATAGCACATGTAA+AGG + chr8_1:74852233-74852252 None:intergenic 40.0%
! TGTCTAGTCCACATTTTGCT+TGG - chr8_1:74852248-74852267 Msa1214320:five_prime_UTR 40.0%
CATAGGTACCAAGCAAAATG+TGG + chr8_1:74852259-74852278 None:intergenic 40.0%
! TCGTCATTCGTGTCTTTTGT+TGG - chr8_1:74852286-74852305 Msa1214320:five_prime_UTR 40.0%
GAATGAGAAGAAGGAAGGGA+AGG + chr8_1:74847363-74847382 None:intergenic 45.0%
CAACGAACACGATGCATCAT+TGG + chr8_1:74847635-74847654 None:intergenic 45.0%
GCTGCATGGTAAATTGAAGC+AGG + chr8_1:74848573-74848592 None:intergenic 45.0%
! ATTTTGTTGCCACCAGAGTC+CGG + chr8_1:74848665-74848684 None:intergenic 45.0%
GACTCTGGTGGCAACAAAAT+TGG - chr8_1:74848665-74848684 Msa1214320:intron 45.0%
TCTGGTGGCAACAAAATTGG+TGG - chr8_1:74848668-74848687 Msa1214320:intron 45.0%
! GTGGCAACAAAATTGGTGGT+GGG - chr8_1:74848672-74848691 Msa1214320:intron 45.0%
! ATTAATCTTGGGAGGGGCAT+GGG + chr8_1:74848762-74848781 None:intergenic 45.0%
GGTTCCATTAATCTTGGGAG+GGG + chr8_1:74848768-74848787 None:intergenic 45.0%
TCTTGGCAGCTGAAAAACAG+TGG - chr8_1:74848912-74848931 Msa1214320:intron 45.0%
AACAGTGGATGATGCTCGAT+TGG - chr8_1:74848927-74848946 Msa1214320:intron 45.0%
!! GACATGCTGATTGACCCTTT+TGG - chr8_1:74848965-74848984 Msa1214320:intron 45.0%
TGAAATTGGTGCGGATCGAA+CGG - chr8_1:74849048-74849067 Msa1214320:intron 45.0%
GTATGGATGACTTACCACGT+AGG + chr8_1:74849370-74849389 None:intergenic 45.0%
GAAACTTGGGTTTCTGCATC+AGG - chr8_1:74849675-74849694 Msa1214320:intron 45.0%
GTTTCTGCATCAGGCAAGAA+TGG - chr8_1:74849684-74849703 Msa1214320:intron 45.0%
AGAATGGTATGCGTCGTGAT+TGG - chr8_1:74849700-74849719 Msa1214320:intron 45.0%
! CGGAATTTTGGACAGCTTTC+TGG + chr8_1:74850193-74850212 None:intergenic 45.0%
ATCTCTCCTCTGACTTCTTC+CGG + chr8_1:74850213-74850232 None:intergenic 45.0%
GAAGAAGTCAGAGGAGAGAT+AGG - chr8_1:74850213-74850232 Msa1214320:intron 45.0%
TGTGGAATCTGCACCAATTC+TGG - chr8_1:74850245-74850264 Msa1214320:CDS 45.0%
GACATACACTTAAACCCGAG+CGG + chr8_1:74850323-74850342 None:intergenic 45.0%
! GAAGTACATTGGCTGGATTC+TGG - chr8_1:74850482-74850501 Msa1214320:intron 45.0%
GACCCAACAGACTAAAGACT+AGG + chr8_1:74850708-74850727 None:intergenic 45.0%
! AGTAAGGGTGTGCTCTTATG+AGG - chr8_1:74850740-74850759 Msa1214320:CDS 45.0%
CATTAGTGTTGTGTTCGGAG+TGG - chr8_1:74850964-74850983 Msa1214320:CDS 45.0%
AGTGAAGGAGCGAAATGACA+AGG + chr8_1:74851006-74851025 None:intergenic 45.0%
CTCACAAGTCAATACCTGTG+AGG + chr8_1:74851116-74851135 None:intergenic 45.0%
!! TATTGACTTGTGAGCAAGCG+AGG - chr8_1:74851122-74851141 Msa1214320:intron 45.0%
!! ATTGACTTGTGAGCAAGCGA+GGG - chr8_1:74851123-74851142 Msa1214320:intron 45.0%
!! TGTGATGGGTTGATCACATC+TGG - chr8_1:74851355-74851374 Msa1214320:intron 45.0%
!! GTGATGGGTTGATCACATCT+GGG - chr8_1:74851356-74851375 Msa1214320:intron 45.0%
CAGATACAGAAGTTAGGGAC+TGG + chr8_1:74851504-74851523 None:intergenic 45.0%
TCTGTATCTGATGCTGGTGT+TGG - chr8_1:74851514-74851533 Msa1214320:intron 45.0%
CTTCAAGTCGAAGCAAATGC+TGG + chr8_1:74851570-74851589 None:intergenic 45.0%
AAGATGGGGCTGAAATTGTG+AGG - chr8_1:74851587-74851606 Msa1214320:intron 45.0%
AGATGGGGCTGAAATTGTGA+GGG - chr8_1:74851588-74851607 Msa1214320:intron 45.0%
TTGTGAGGGGTAGAACTAAG+TGG - chr8_1:74851602-74851621 Msa1214320:intron 45.0%
ATTGTGAATCAGGTTCCAGC+AGG - chr8_1:74851652-74851671 Msa1214320:intron 45.0%
TCTCTTCCCTAGGGTTAAAC+TGG - chr8_1:74851719-74851738 Msa1214320:intron 45.0%
!! GTGTTGCTTTGGTGCGTAAA+AGG - chr8_1:74851810-74851829 Msa1214320:intron 45.0%
! GTTGCTTTGGTGCGTAAAAG+GGG - chr8_1:74851812-74851831 Msa1214320:intron 45.0%
! TTGCTTTGGTGCGTAAAAGG+GGG - chr8_1:74851813-74851832 Msa1214320:intron 45.0%
ACGTCCCACATGGGAATTAT+TGG - chr8_1:74852124-74852143 Msa1214320:intron 45.0%
CGTCCCACATGGGAATTATT+GGG - chr8_1:74852125-74852144 Msa1214320:intron 45.0%
GCACCCAATAATTCCCATGT+GGG + chr8_1:74852131-74852150 None:intergenic 45.0%
TGCACCCAATAATTCCCATG+TGG + chr8_1:74852132-74852151 None:intergenic 45.0%
CCCCACATATATCCTAGACA+TGG + chr8_1:74852209-74852228 None:intergenic 45.0%
CGAATGACGAGCACAATCAT+AGG + chr8_1:74852276-74852295 None:intergenic 45.0%
!!! TTTTTTTTTTTTATTAGTAT+TGG - chr8_1:74848110-74848129 Msa1214320:CDS 5.0%
GGAAGGGAAGGTGAAATCAG+AGG + chr8_1:74847351-74847370 None:intergenic 50.0%
TTGCGAGCTTCGATCTCTGA+AGG + chr8_1:74847496-74847515 None:intergenic 50.0%
CCGGCAAGGATGAAGTAACA+GGG + chr8_1:74848646-74848665 None:intergenic 50.0%
! CCCTGTTACTTCATCCTTGC+CGG - chr8_1:74848643-74848662 Msa1214320:intron 50.0%
TCCGGCAAGGATGAAGTAAC+AGG + chr8_1:74848647-74848666 None:intergenic 50.0%
GGTGGCAACAAAATTGGTGG+TGG - chr8_1:74848671-74848690 Msa1214320:intron 50.0%
CATTAATCTTGGGAGGGGCA+TGG + chr8_1:74848763-74848782 None:intergenic 50.0%
CATGCCCCTCCCAAGATTAA+TGG - chr8_1:74848761-74848780 Msa1214320:intron 50.0%
TGCTCGATTGGAAGCCAAGA+CGG - chr8_1:74848939-74848958 Msa1214320:intron 50.0%
ATCAGCATGTCAGACCGTCT+TGG + chr8_1:74848956-74848975 None:intergenic 50.0%
GTTAAAACTGCGGGGCTTCT+TGG - chr8_1:74849259-74849278 Msa1214320:intron 50.0%
AAATCTTGACGAGAGCCTCC+AGG - chr8_1:74849748-74849767 Msa1214320:intron 50.0%
! TTGCTGGCTGCAAAAGGAAG+AGG + chr8_1:74849801-74849820 None:intergenic 50.0%
!! CACAGCGGATTATATCCGCT+CGG - chr8_1:74850305-74850324 Msa1214320:CDS 50.0%
!! ACAGCGGATTATATCCGCTC+GGG - chr8_1:74850306-74850325 Msa1214320:CDS 50.0%
GTCTGTGCTTTCAGCCTAGA+TGG - chr8_1:74850424-74850443 Msa1214320:intron 50.0%
! GTACATTGGCTGGATTCTGG+AGG - chr8_1:74850485-74850504 Msa1214320:intron 50.0%
GAGCGAAATGACAAGGAGAG+AGG + chr8_1:74850999-74851018 None:intergenic 50.0%
TAAGGTGGGCCTCATTGTTG+AGG + chr8_1:74851035-74851054 None:intergenic 50.0%
TGACTCTCGAGGATTGACTG+TGG + chr8_1:74851424-74851443 None:intergenic 50.0%
CACAAAGCTCATGACTCTCG+AGG + chr8_1:74851435-74851454 None:intergenic 50.0%
TTGGAGTATAGGAGGGAGTG+TGG - chr8_1:74851463-74851482 Msa1214320:intron 50.0%
! GTAATCTAGCTCAAAGCGGC+CGG - chr8_1:74851536-74851555 Msa1214320:intron 50.0%
GCAAATGCTGGCACTCAATC+CGG + chr8_1:74851558-74851577 None:intergenic 50.0%
GATGGGGCTGAAATTGTGAG+GGG - chr8_1:74851589-74851608 Msa1214320:intron 50.0%
TGAGGGGTAGAACTAAGTGG+AGG - chr8_1:74851605-74851624 Msa1214320:intron 50.0%
AAACCTTAGGTGCTTCCTGC+TGG + chr8_1:74851670-74851689 None:intergenic 50.0%
! TGCTTTGGTGCGTAAAAGGG+GGG - chr8_1:74851814-74851833 Msa1214320:intron 50.0%
GCAGAGAGATAGAGTAGAGC+AGG + chr8_1:74851870-74851889 None:intergenic 50.0%
TGGTTGCTATAGTGCTAGGC+TGG - chr8_1:74851913-74851932 Msa1214320:intron 50.0%
! GGTTGATGTTCTTTGCCGCT+TGG - chr8_1:74852328-74852347 Msa1214320:five_prime_UTR 50.0%
AGGGAAAAAAGCAGCGGCAG+TGG + chr8_1:74848627-74848646 None:intergenic 55.0%
ACTTCATCCTTGCCGGACTC+TGG - chr8_1:74848650-74848669 Msa1214320:intron 55.0%
GTGGGAATGCGAACCTTGGA+GGG - chr8_1:74848690-74848709 Msa1214320:intron 55.0%
GTCTGCGGGCTTGCAAGTAA+AGG - chr8_1:74848730-74848749 Msa1214320:intron 55.0%
GTCCTAGAGGATTGCGACGA+CGG + chr8_1:74848836-74848855 None:intergenic 55.0%
GCATGCTCCAGTCAGGTAAC+TGG + chr8_1:74848868-74848887 None:intergenic 55.0%
! GCAAGAAGCATGCTCCAGTC+AGG + chr8_1:74848875-74848894 None:intergenic 55.0%
!! GGGCTTCTTGGTGATGGCTT+TGG - chr8_1:74849271-74849290 Msa1214320:CDS 55.0%
TTGTTGAGGTGGGGGAGTGA+AGG + chr8_1:74851021-74851040 None:intergenic 55.0%
ACTCCCCCACCTCAACAATG+AGG - chr8_1:74851023-74851042 Msa1214320:intron 55.0%
TGGGCCTCATTGTTGAGGTG+GGG + chr8_1:74851030-74851049 None:intergenic 55.0%
GTGGGCCTCATTGTTGAGGT+GGG + chr8_1:74851031-74851050 None:intergenic 55.0%
! GTATAGGAGGGAGTGTGGCA+AGG - chr8_1:74851468-74851487 Msa1214320:intron 55.0%
!! GTTCCAGCAGGAAGCACCTA+AGG - chr8_1:74851664-74851683 Msa1214320:intron 55.0%
TCATCCTTGCCGGACTCTGG+TGG - chr8_1:74848653-74848672 Msa1214320:intron 60.0%
!! GGTGGTGGGAATGCGAACCT+TGG - chr8_1:74848686-74848705 Msa1214320:intron 60.0%
GGTGGGAATGCGAACCTTGG+AGG - chr8_1:74848689-74848708 Msa1214320:intron 60.0%
TGCCGTCGTCGCAATCCTCT+AGG - chr8_1:74848831-74848850 Msa1214320:intron 60.0%
ACTGCGGGGCTTCTTGGTGA+TGG - chr8_1:74849265-74849284 Msa1214320:CDS 60.0%
GGGCCTCATTGTTGAGGTGG+GGG + chr8_1:74851029-74851048 None:intergenic 60.0%
GGTGGGCCTCATTGTTGAGG+TGG + chr8_1:74851032-74851051 None:intergenic 60.0%
GTTGCCACCAGAGTCCGGCA+AGG + chr8_1:74848660-74848679 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 74847184 74852416 74847184 ID=Msa1214320;Name=Msa1214320
chr8_1 mRNA 74847184 74852416 74847184 ID=Msa1214320-mRNA-1;Parent=Msa1214320;Name=Msa1214320-mRNA-1;_AED=0.09;_eAED=0.09;_QI=269|1|1|1|0.71|0.5|8|705|414
chr8_1 exon 74847184 74847297 74847184 ID=Msa1214320-mRNA-1:exon:25700;Parent=Msa1214320-mRNA-1
chr8_1 exon 74847325 74848185 74847325 ID=Msa1214320-mRNA-1:exon:25699;Parent=Msa1214320-mRNA-1
chr8_1 exon 74849094 74849162 74849094 ID=Msa1214320-mRNA-1:exon:25698;Parent=Msa1214320-mRNA-1
chr8_1 exon 74849265 74849436 74849265 ID=Msa1214320-mRNA-1:exon:25697;Parent=Msa1214320-mRNA-1
chr8_1 exon 74849831 74849944 74849831 ID=Msa1214320-mRNA-1:exon:25696;Parent=Msa1214320-mRNA-1
chr8_1 exon 74850226 74850359 74850226 ID=Msa1214320-mRNA-1:exon:25695;Parent=Msa1214320-mRNA-1
chr8_1 exon 74850498 74851008 74850498 ID=Msa1214320-mRNA-1:exon:25694;Parent=Msa1214320-mRNA-1
chr8_1 exon 74852173 74852416 74852173 ID=Msa1214320-mRNA-1:exon:25693;Parent=Msa1214320-mRNA-1
chr8_1 five_prime_UTR 74852173 74852416 74852173 ID=Msa1214320-mRNA-1:five_prime_utr;Parent=Msa1214320-mRNA-1
chr8_1 five_prime_UTR 74850984 74851008 74850984 ID=Msa1214320-mRNA-1:five_prime_utr;Parent=Msa1214320-mRNA-1
chr8_1 CDS 74850498 74850983 74850498 ID=Msa1214320-mRNA-1:cds;Parent=Msa1214320-mRNA-1
chr8_1 CDS 74850226 74850359 74850226 ID=Msa1214320-mRNA-1:cds;Parent=Msa1214320-mRNA-1
chr8_1 CDS 74849831 74849944 74849831 ID=Msa1214320-mRNA-1:cds;Parent=Msa1214320-mRNA-1
chr8_1 CDS 74849265 74849436 74849265 ID=Msa1214320-mRNA-1:cds;Parent=Msa1214320-mRNA-1
chr8_1 CDS 74849094 74849162 74849094 ID=Msa1214320-mRNA-1:cds;Parent=Msa1214320-mRNA-1
chr8_1 CDS 74847916 74848185 74847916 ID=Msa1214320-mRNA-1:cds;Parent=Msa1214320-mRNA-1
chr8_1 three_prime_UTR 74847325 74847915 74847325 ID=Msa1214320-mRNA-1:three_prime_utr;Parent=Msa1214320-mRNA-1
chr8_1 three_prime_UTR 74847184 74847297 74847184 ID=Msa1214320-mRNA-1:three_prime_utr;Parent=Msa1214320-mRNA-1
Gene Sequence

>Msa1214320

ATGGTGGCCACTGCCGCTGCTTTTTTCCCTGTTACTTCATCCTTGCCGGACTCTGGTGGCAACAAAATTGGTGGTGGGAATGCGAACCTTGGAGGGCTTAAATCTAAACATGCGTCTGCGGGCTTGCAAGTAAAGGCAAATGCCCATGCCCCTCCCAAGATTAATGGAACCAAAGTTTCTACATCTGTAGAAAACTATAAGCATGAGGATGTTTTGCCGTCGTCGCAATCCTCTAGGACTTTTATCAACCAGTTACCTGACTGGAGCATGCTTCTTGCTGCTATAACAACGATTTTCTTGGCAGCTGAAAAACAGTGGATGATGCTCGATTGGAAGCCAAGACGGTCTGACATGCTGATTGACCCTTTTGGTATAGGCAAAATTGTTCAGGATGGTCTTGTGTTCAGTGAAAACTTTTCTATCAGATCGTATGAAATTGGTGCGGATCGAACGGCGTCCATAGATACAATAATGAATCATTTGCAGGAAACTGCACTTAATCATGTTAAAACTGCGGGGCTTCTTGGTGATGGCTTTGGTTCTACGCCTGAAATGTGCAAAAAGAACTTAATATGGGTAGTTGCGCGGATGCAAGTTGTTGTTGATCGTTATCCTACGTGGGGAGATGTTGTTCATGTAGAAACTTGGGTTTCTGCATCAGGCAAGAATGGTATGCGTCGTGATTGGCTTTTACGTGATTATAATACTGGGGAAATCTTGACGAGAGCCTCCAGTGTTTGGGTCATGATGAATAAACATACCAGAAAGCTGTCCAAAATTCCGGAAGAAGTCAGAGGAGAGATAGGTTCTTATTTTGTGGAATCTGCACCAATTCTGGAAGAAGATGACAGAAAACTGGCTAAACTTGATGACAGCACAGCGGATTATATCCGCTCGGGTTTAAGTCCTAGATGGAGTGATCTAGATGTCAATCAGCATGTTAACAATGTGAAGTACATTGGCTGGATTCTGGAGAGTGCTCCACAGTCAATCCTCGAGAGTCATGAGCTTTGTGCTATGACTTTGGAGTATAGGAGGGAGTGTGGCAAGGACAGTGTGCTCCAGTCCCTAACTTCTGTATCTGATGCTGGTGTTGGTAATCTAGCTCAAAGCGGCCGGATTGAGTGCCAGCATTTGCTTCGACTTGAAGATGGGGCTGAAATTGTGAGGGGTAGAACTAAGTGGAGGCCCAAACCTGTGAACCACTTTGATATTGTGAATCAGGTTCCAGCAGGAAGCACCTAA
Protein sequence

>Msa1214320

MVATAAAFFPVTSSLPDSGGNKIGGGNANLGGLKSKHASAGLQVKANAHAPPKINGTKVSTSVENYKHEDVLPSSQSSRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRSDMLIDPFGIGKIVQDGLVFSENFSIRSYEIGADRTASIDTIMNHLQETALNHVKTAGLLGDGFGSTPEMCKKNLIWVVARMQVVVDRYPTWGDVVHVETWVSASGKNGMRRDWLLRDYNTGEILTRASSVWVMMNKHTRKLSKIPEEVRGEIGSYFVESAPILEEDDRKLAKLDDSTADYIRSGLSPRWSDLDVNQHVNNVKYIGWILESAPQSILESHELCAMTLEYRRECGKDSVLQSLTSVSDAGVGNLAQSGRIECQHLLRLEDGAEIVRGRTKWRPKPVNHFDIVNQVPAGST*