AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1261070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1261070 MtrunA17_Chr4g0062811 98.792 414 5 0 1 414 1 414 0.0 849
Msa1261070 MtrunA17_Chr2g0306391 78.520 419 81 5 1 414 1 415 0.0 660
Msa1261070 MtrunA17_Chr3g0132041 53.025 281 124 4 126 398 103 383 2.23e-103 311
Msa1261070 MtrunA17_Chr7g0235761 46.179 301 140 6 119 398 67 366 4.01e-84 261
Msa1261070 MtrunA17_Chr1g0208941 43.631 314 118 4 119 398 75 363 3.46e-81 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1261070 AT1G08510.1 74.010 404 97 3 1 398 1 402 0.0 609
Msa1261070 AT3G25110.1 48.814 295 135 7 119 399 68 360 3.93e-90 277
Msa1261070 AT4G13050.1 46.667 300 134 7 121 398 69 364 1.90e-87 270

Find 175 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGACTTCTTCCGGAATTT+TGG 0.170299 8_2:-63363071 None:intergenic
ATTTAATTGTTTGATTAAAA+TGG 0.175992 8_2:+63364816 Msa1261070:three_prime_UTR
CCCTGTTACTTCATCCTTGC+CGG 0.219883 8_2:+63361512 Msa1261070:CDS
TCTATCAGATCGTATGAAAT+TGG 0.224730 8_2:+63361903 Msa1261070:CDS
CTGTCATCTTCTTCCAGAAT+TGG 0.234599 8_2:-63363127 None:intergenic
ACGTCCCACATGGGAATTAT+TGG 0.238051 8_2:+63364993 Msa1261070:three_prime_UTR
ACCAGAAAATAAATGAAATT+TGG 0.239522 8_2:-63364763 None:intergenic
TGTGGAATCTGCACCAATTC+TGG 0.245449 8_2:+63363114 Msa1261070:CDS
TTGGAGTAGTGATTGATTAT+AGG 0.248424 8_2:-63360032 None:intergenic
ATGATTCATTATTGTATCTA+TGG 0.249215 8_2:-63361943 None:intergenic
TATTATTATAACATGCTTAA+AGG 0.258827 8_2:-63365034 None:intergenic
CCACTTTGATATTGTGAATC+AGG 0.261585 8_2:+63364511 Msa1261070:CDS
AAGAAAATTGCATCTTTAGA+AGG 0.262385 8_2:-63364875 None:intergenic
CATGCCCCTCCCAAGATTAA+TGG 0.282466 8_2:+63361630 Msa1261070:CDS
ATCAAAGTGGTTCACAGGTT+TGG 0.283485 8_2:-63364498 None:intergenic
GTTAAAACTGCGGGGCTTCT+TGG 0.293306 8_2:+63362128 Msa1261070:CDS
GTGTTGCTTTGGTGCGTAAA+AGG 0.296067 8_2:+63364679 Msa1261070:three_prime_UTR
GACTCTGGTGGCAACAAAAT+TGG 0.296666 8_2:+63361534 Msa1261070:CDS
TCAAAGTGGTTCACAGGTTT+GGG 0.298152 8_2:-63364497 None:intergenic
GGAAATGAGATTATTTAAAC+AGG 0.315443 8_2:-63360103 None:intergenic
AACTTTGGTTCCATTAATCT+TGG 0.321274 8_2:-63361640 None:intergenic
CCTTCTAATTTGTGTTGCTT+TGG 0.321827 8_2:+63364668 Msa1261070:three_prime_UTR
TGGAGTAGTGATTGATTATA+GGG 0.334581 8_2:-63360031 None:intergenic
TGGTATAGGCAAAATTGTTC+AGG 0.344538 8_2:+63361854 Msa1261070:CDS
ATCTCTCCTCTGACTTCTTC+CGG 0.345295 8_2:-63363079 None:intergenic
GAAGTACATTGGCTGGATTC+TGG 0.345569 8_2:+63363351 Msa1261070:CDS
GTCTGTGCTTTCAGCCTAGA+TGG 0.356485 8_2:+63363293 Msa1261070:intron
GGGCTTCTTGGTGATGGCTT+TGG 0.357333 8_2:+63362140 Msa1261070:CDS
GCTAATTACAATGAGATATA+TGG 0.358437 8_2:-63364712 None:intergenic
TACAATAATGAATCATTTGC+AGG 0.359879 8_2:+63361950 Msa1261070:CDS
CAGAAAGCTGTCCAAAATTC+CGG 0.364635 8_2:+63363060 Msa1261070:CDS
CGGCATCAGATACAGAAGTT+AGG 0.372365 8_2:-63364376 None:intergenic
GAAACTTGGGTTTCTGCATC+AGG 0.376424 8_2:+63362544 Msa1261070:CDS
TCTCTTCCCTAGGGTTAAAC+TGG 0.377506 8_2:+63364588 Msa1261070:three_prime_UTR
GTGCTATGACTTTGGAGTAT+AGG 0.377990 8_2:+63364321 Msa1261070:CDS
CATTTGCTTCGACTTGAAGA+TGG 0.382701 8_2:+63364440 Msa1261070:CDS
TGTTGCTTTGGTGCGTAAAA+GGG 0.382744 8_2:+63364680 Msa1261070:three_prime_UTR
TGAGCTTTGTGCTATGACTT+TGG 0.385914 8_2:+63364313 Msa1261070:CDS
TTTCGTGATCGACAGTGTTT+GGG 0.391693 8_2:+63363018 Msa1261070:intron
TCCGGCAAGGATGAAGTAAC+AGG 0.392133 8_2:-63361513 None:intergenic
GAAGAAGTCAGAGGAGAGAT+AGG 0.399585 8_2:+63363082 Msa1261070:CDS
CCAAAGCAACACAAATTAGA+AGG 0.409398 8_2:-63364668 None:intergenic
AAACCTTAGGTGCTTCCTGC+TGG 0.412033 8_2:-63364536 None:intergenic
GGTGGGAATGCGAACCTTGG+AGG 0.413247 8_2:+63361558 Msa1261070:CDS
GGAAGAAGATGACAGAAAAC+TGG 0.423587 8_2:+63363135 Msa1261070:CDS
TTCTACAGATGTAGAAACTT+TGG 0.428061 8_2:-63361655 None:intergenic
ATTAATCTTGGGAGGGGCAT+GGG 0.432092 8_2:-63361628 None:intergenic
GACATGCTGATTGACCCTTT+TGG 0.434816 8_2:+63361834 Msa1261070:CDS
CGTCCCACATGGGAATTATT+GGG 0.436232 8_2:+63364994 Msa1261070:three_prime_UTR
TTTCTGGTTGCTATAGTGCT+AGG 0.437871 8_2:+63364778 Msa1261070:three_prime_UTR
GCATGCTCCAGTCAGGTAAC+TGG 0.441878 8_2:-63361734 None:intergenic
ATCAGAGGAAGAAGAAGTAA+AGG 0.444224 8_2:-63360176 None:intergenic
GGTTCCATTAATCTTGGGAG+GGG 0.445528 8_2:-63361634 None:intergenic
ACAATAACGTGTTCAGTTCA+AGG 0.446973 8_2:+63365227 Msa1261070:three_prime_UTR
CATTAATCTTGGGAGGGGCA+TGG 0.448502 8_2:-63361629 None:intergenic
GCAAATGCTGGCACTCAATC+CGG 0.451066 8_2:-63364424 None:intergenic
ACTTCATCCTTGCCGGACTC+TGG 0.452399 8_2:+63361519 Msa1261070:CDS
CTTAATCATGTTAAAACTGC+GGG 0.456249 8_2:+63362119 Msa1261070:CDS
ACTTTGGTTCCATTAATCTT+GGG 0.456944 8_2:-63361639 None:intergenic
TGCCGTCGTCGCAATCCTCT+AGG 0.464686 8_2:+63361700 Msa1261070:CDS
ATCGAGAATGAGAAGAAGGA+AGG 0.473005 8_2:-63360208 None:intergenic
ATTTGCTTCGACTTGAAGAT+GGG 0.475110 8_2:+63364441 Msa1261070:CDS
TATAACATGCTTAAAGGAGA+AGG 0.476987 8_2:-63365028 None:intergenic
ATATTATAAGACATGTAGAT+TGG 0.477574 8_2:-63364644 None:intergenic
GCAAGAAGCATGCTCCAGTC+AGG 0.478605 8_2:-63361741 None:intergenic
ACAATGTGAAGTACATTGGC+TGG 0.478806 8_2:+63363344 Msa1261070:CDS
GTTTCTGCATCAGGCAAGAA+TGG 0.481956 8_2:+63362553 Msa1261070:CDS
ATGTTGTTCATGTAGAAACT+TGG 0.487017 8_2:+63362530 Msa1261070:CDS
TGGTTGCTATAGTGCTAGGC+TGG 0.490240 8_2:+63364782 Msa1261070:three_prime_UTR
GGTTGATGTTCTTTGCCGCT+TGG 0.491363 8_2:+63365197 Msa1261070:three_prime_UTR
GTATACAATCACAGTTGTAT+TGG 0.492198 8_2:-63364950 None:intergenic
ACAATATCAAAGTGGTTCAC+AGG 0.493409 8_2:-63364503 None:intergenic
AACAGTGGATGATGCTCGAT+TGG 0.493658 8_2:+63361796 Msa1261070:CDS
GCAGAGAGATAGAGTAGAGC+AGG 0.497228 8_2:-63364736 None:intergenic
ACTGCGGGGCTTCTTGGTGA+TGG 0.497472 8_2:+63362134 Msa1261070:CDS
TCAGAGGAAGAAGAAGTAAA+GGG 0.499026 8_2:-63360175 None:intergenic
AGAAAATTGCATCTTTAGAA+GGG 0.502651 8_2:-63364874 None:intergenic
AGAATGGTATGCGTCGTGAT+TGG 0.502971 8_2:+63362569 Msa1261070:CDS
ACATCTAGATCACTCCATCT+AGG 0.503730 8_2:-63363307 None:intergenic
GTTCCAGCAGGAAGCACCTA+AGG 0.506583 8_2:+63364533 Msa1261070:CDS
TCGAGAATGAGAAGAAGGAA+GGG 0.507050 8_2:-63360207 None:intergenic
ATTGGACTATGGTGTTGGAT+TGG 0.509250 8_2:-63360051 None:intergenic
GGCATCAGATACAGAAGTTA+GGG 0.510988 8_2:-63364375 None:intergenic
GTGGGAATGCGAACCTTGGA+GGG 0.511900 8_2:+63361559 Msa1261070:CDS
TGCCATGTCTAGGATATATG+TGG 0.513209 8_2:+63365073 Msa1261070:three_prime_UTR
GTCCTAGAGGATTGCGACGA+CGG 0.514658 8_2:-63361702 None:intergenic
AGAAATCGAGAATGAGAAGA+AGG 0.515121 8_2:-63360212 None:intergenic
GTAATCTAGCTCAAAGCGGC+CGG 0.520723 8_2:+63364405 Msa1261070:CDS
CTTTCTTCTCTTCTTCACTC+TGG 0.520960 8_2:+63360249 Msa1261070:five_prime_UTR
TTATCAACCAGTTACCTGAC+TGG 0.521390 8_2:+63361727 Msa1261070:CDS
AAATCTAAACATGCGTCTGC+GGG 0.521491 8_2:+63361585 Msa1261070:CDS
CTATGACTTTGGAGTATAGG+AGG 0.523086 8_2:+63364324 Msa1261070:CDS
CATGAACCATTCAAAACCTT+AGG 0.524151 8_2:-63364549 None:intergenic
GTTAGAACCAGTTTAACCCT+AGG 0.525979 8_2:-63364595 None:intergenic
ATCATATCAGTCTCTTCCCT+AGG 0.526127 8_2:+63364578 Msa1261070:three_prime_UTR
TTTGTCTCATCTAAAGTGAA+GGG 0.529235 8_2:+63365260 Msa1261070:three_prime_UTR
ATTGTTTGATTAAAATGGCT+AGG 0.529717 8_2:+63364821 Msa1261070:three_prime_UTR
CTAACTTCTGTATCTGATGC+CGG 0.532444 8_2:+63364377 Msa1261070:CDS
CTTCAAGTCGAAGCAAATGC+TGG 0.533924 8_2:-63364436 None:intergenic
TGGTTCCATTAATCTTGGGA+GGG 0.538281 8_2:-63361635 None:intergenic
ATTTGTCTCATCTAAAGTGA+AGG 0.539866 8_2:+63365259 Msa1261070:three_prime_UTR
TGTTGTTCATGTAGAAACTT+GGG 0.541342 8_2:+63362531 Msa1261070:CDS
ACAGCGGATTATATCCGCTC+GGG 0.549430 8_2:+63363175 Msa1261070:CDS
TTGGTTCCATTAATCTTGGG+AGG 0.550365 8_2:-63361636 None:intergenic
GTCTGCGGGCTTGCAAGTAA+AGG 0.550821 8_2:+63361599 Msa1261070:CDS
GGAAGGGAAGGTGAAATCAG+AGG 0.552484 8_2:-63360191 None:intergenic
CAGATACAGAAGTTAGGGAC+TGG 0.555844 8_2:-63364370 None:intergenic
TAAATCTAAACATGCGTCTG+CGG 0.556057 8_2:+63361584 Msa1261070:CDS
GCCATGTCTAGGATATATGT+GGG 0.557762 8_2:+63365074 Msa1261070:three_prime_UTR
ATAACATGCTTAAAGGAGAA+GGG 0.557867 8_2:-63365027 None:intergenic
GGTGGCAACAAAATTGGTGG+TGG 0.558849 8_2:+63361540 Msa1261070:CDS
TCTGTATCTGATGCCGGTGT+TGG 0.560011 8_2:+63364383 Msa1261070:CDS
TTGTGAGGGGTAGAACTAAG+TGG 0.561099 8_2:+63364471 Msa1261070:CDS
AAATCTTGACGAGAGCCTCC+AGG 0.565088 8_2:+63362617 Msa1261070:CDS
GAATGAGAAGAAGGAAGGGA+AGG 0.566032 8_2:-63360203 None:intergenic
TGCTCGATTGGAAGCCAAGA+CGG 0.569855 8_2:+63361808 Msa1261070:CDS
GTTGCTTTGGTGCGTAAAAG+GGG 0.571711 8_2:+63364681 Msa1261070:three_prime_UTR
TGAAATTGGTGCGGATCGAA+CGG 0.573921 8_2:+63361917 Msa1261070:CDS
GGTGGTGGGAATGCGAACCT+TGG 0.574054 8_2:+63361555 Msa1261070:CDS
ATCAGCATGTCAGACCGTCT+TGG 0.574490 8_2:-63361822 None:intergenic
ATGTATACAAACGTCCCACA+TGG 0.576326 8_2:+63364983 Msa1261070:three_prime_UTR
AGACACGATAGCACATGTAA+AGG 0.578428 8_2:-63365099 None:intergenic
CACAGCGGATTATATCCGCT+CGG 0.579496 8_2:+63363174 Msa1261070:CDS
CATAGGTACCAAGCAAAATG+TGG 0.584997 8_2:-63365125 None:intergenic
GTTTAGATTTAAGCCCTCCA+AGG 0.590994 8_2:-63361572 None:intergenic
TCATCCTTGCCGGACTCTGG+TGG 0.592944 8_2:+63361522 Msa1261070:CDS
ATTGTGAATCAGGTTCCAGC+AGG 0.595303 8_2:+63364521 Msa1261070:CDS
TTAGAACCAGTTTAACCCTA+GGG 0.601322 8_2:-63364594 None:intergenic
AAAATAGAATCTCATTATGG+TGG 0.602507 8_2:+63361470 Msa1261070:exon
ACGTTTGTATACATACAAGC+TGG 0.609142 8_2:-63364974 None:intergenic
TCATATCAGTCTCTTCCCTA+GGG 0.611662 8_2:+63364579 Msa1261070:three_prime_UTR
TCTGGTGGCAACAAAATTGG+TGG 0.617307 8_2:+63361537 Msa1261070:CDS
TGCTTTGGTGCGTAAAAGGG+GGG 0.617854 8_2:+63364683 Msa1261070:three_prime_UTR
GTTAACAATGTGAAGTACAT+TGG 0.619008 8_2:+63363340 Msa1261070:CDS
CCCCACATATATCCTAGACA+TGG 0.620563 8_2:-63365075 None:intergenic
AGATGGGGCTGAAATTGTGA+GGG 0.620618 8_2:+63364457 Msa1261070:CDS
TTGTCTCATCTAAAGTGAAG+GGG 0.621484 8_2:+63365261 Msa1261070:three_prime_UTR
GAAATGAGATTATTTAAACA+GGG 0.622857 8_2:-63360102 None:intergenic
GTATAGGAGGGAGTGTGGCA+AGG 0.625777 8_2:+63364337 Msa1261070:CDS
CTGGTTGATAAAAGTCCTAG+AGG 0.628361 8_2:-63361715 None:intergenic
TTTGCTTCGACTTGAAGATG+GGG 0.629398 8_2:+63364442 Msa1261070:CDS
TTGGAGTATAGGAGGGAGTG+TGG 0.631407 8_2:+63364332 Msa1261070:CDS
CCTGATTCACAATATCAAAG+TGG 0.634270 8_2:-63364511 None:intergenic
CACAAAGCTCATGACTCTCG+AGG 0.634653 8_2:-63364301 None:intergenic
TGTAGAAAACTATAAGCATG+AGG 0.636729 8_2:+63361671 Msa1261070:CDS
TTTACGTGATTATAATACTG+GGG 0.636769 8_2:+63362594 Msa1261070:CDS
AAGATGGGGCTGAAATTGTG+AGG 0.638157 8_2:+63364456 Msa1261070:CDS
GTTGCCACCAGAGTCCGGCA+AGG 0.642093 8_2:-63361526 None:intergenic
TGCACCCAATAATTCCCATG+TGG 0.645028 8_2:-63364998 None:intergenic
GTGGCAACAAAATTGGTGGT+GGG 0.645115 8_2:+63361541 Msa1261070:CDS
ACACAAGCAAAACTCTTCAG+AGG 0.647990 8_2:-63364617 None:intergenic
ATAGGCAAAATTGTTCAGGA+TGG 0.648420 8_2:+63361858 Msa1261070:CDS
TTGCTTTGGTGCGTAAAAGG+GGG 0.650036 8_2:+63364682 Msa1261070:three_prime_UTR
TTGTTGATCGTTATCCTACG+TGG 0.650683 8_2:+63362222 Msa1261070:CDS
GCACCCAATAATTCCCATGT+GGG 0.652186 8_2:-63364997 None:intergenic
CCATGTCTAGGATATATGTG+GGG 0.652456 8_2:+63365075 Msa1261070:three_prime_UTR
TTGAGCTAGATTACCAACAC+CGG 0.657992 8_2:-63364396 None:intergenic
TGTATACAAACGTCCCACAT+GGG 0.658845 8_2:+63364984 Msa1261070:three_prime_UTR
ACTTAATATGGGTAGTTGCG+CGG 0.660135 8_2:+63362189 Msa1261070:CDS
CATGTCTAGGATATATGTGG+GGG 0.663903 8_2:+63365076 Msa1261070:three_prime_UTR
GTACATTGGCTGGATTCTGG+AGG 0.665676 8_2:+63363354 Msa1261070:CDS
TATGACTTTGGAGTATAGGA+GGG 0.670410 8_2:+63364325 Msa1261070:CDS
ACTTAATCATGTTAAAACTG+CGG 0.670918 8_2:+63362118 Msa1261070:CDS
CCGGCAAGGATGAAGTAACA+GGG 0.676128 8_2:-63361512 None:intergenic
AAAATTCCGGAAGAAGTCAG+AGG 0.678251 8_2:+63363073 Msa1261070:CDS
GTTATTGTGCATGTACCAAG+CGG 0.684909 8_2:-63365212 None:intergenic
TTAATCATGTTAAAACTGCG+GGG 0.691366 8_2:+63362120 Msa1261070:CDS
GATGGGGCTGAAATTGTGAG+GGG 0.696909 8_2:+63364458 Msa1261070:CDS
TGACTCTCGAGGATTGACTG+TGG 0.701079 8_2:-63364290 None:intergenic
TGAGGGGTAGAACTAAGTGG+AGG 0.718786 8_2:+63364474 Msa1261070:CDS
CAGATCGTATGAAATTGGTG+CGG 0.718974 8_2:+63361908 Msa1261070:CDS
GACATACACTTAAACCCGAG+CGG 0.720447 8_2:-63363189 None:intergenic
GTTGGTAATCTAGCTCAAAG+CGG 0.758811 8_2:+63364401 Msa1261070:CDS
GTATGGATGACTTACCACGT+AGG 0.760670 8_2:-63362236 None:intergenic
TAAACTTGATGACAGCACAG+CGG 0.795237 8_2:+63363159 Msa1261070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATGAATCTTTATTTA+TGG + chr8_2:63361975-63361994 Msa1261070:intron 10.0%
!! ATTTAATTGTTTGATTAAAA+TGG + chr8_2:63364816-63364835 Msa1261070:three_prime_UTR 10.0%
!!! GTATTTTTTTGGAAAAAAAT+TGG - chr8_2:63360072-63360091 None:intergenic 15.0%
!! AAATTCTACATAATCTAAAA+TGG - chr8_2:63360755-63360774 None:intergenic 15.0%
!!! TTTTTATTAGTATTGGAATT+AGG + chr8_2:63360986-63361005 Msa1261070:intron 15.0%
!! TAAAAAATAGAATCTCATTA+TGG + chr8_2:63361467-63361486 Msa1261070:exon 15.0%
!!! TTATTCTACAGATTTTAATA+TGG - chr8_2:63362891-63362910 None:intergenic 15.0%
!! AAATTAAATAAAATTCTCGA+TGG + chr8_2:63363465-63363484 Msa1261070:intron 15.0%
!! TACTAACATTATATTGTTTA+GGG + chr8_2:63363703-63363722 Msa1261070:intron 15.0%
!! AATATGTGACTAATTAATTA+GGG - chr8_2:63364162-63364181 None:intergenic 15.0%
!!! ATATTATTATTCTTTTCTCT+TGG + chr8_2:63364851-63364870 Msa1261070:three_prime_UTR 15.0%
!! TATTATTATAACATGCTTAA+AGG - chr8_2:63365037-63365056 None:intergenic 15.0%
!!! GTGTATGTATAGTATTTTTT+TGG - chr8_2:63360083-63360102 None:intergenic 20.0%
!! GAAATGAGATTATTTAAACA+GGG - chr8_2:63360105-63360124 None:intergenic 20.0%
!!! ATTGTGTAATTTTAGATCAT+AGG - chr8_2:63360153-63360172 None:intergenic 20.0%
!!! TTAATTTTGAAATTATCGAG+AGG + chr8_2:63360465-63360484 Msa1261070:intron 20.0%
!!! TTTTTACTTTTCTTGTTTTG+CGG + chr8_2:63360598-63360617 Msa1261070:intron 20.0%
!!! AGTTGTTATTTGTTTACTTT+TGG + chr8_2:63360651-63360670 Msa1261070:intron 20.0%
!! ATGATTCATTATTGTATCTA+TGG - chr8_2:63361946-63361965 None:intergenic 20.0%
!!! ACAATTATTTGTTTGATAAC+AGG + chr8_2:63362088-63362107 Msa1261070:intron 20.0%
!!! TAGTTGTTTTGATCTTTATA+AGG + chr8_2:63362319-63362338 Msa1261070:intron 20.0%
!!! TCAAGTATCTATATTTTTTC+AGG + chr8_2:63362503-63362522 Msa1261070:intron 20.0%
!!! CAAGTATCTATATTTTTTCA+GGG + chr8_2:63362504-63362523 Msa1261070:intron 20.0%
!!! AAGTATCTATATTTTTTCAG+GGG + chr8_2:63362505-63362524 Msa1261070:intron 20.0%
!!! TTTTACGTGATTATAATACT+GGG + chr8_2:63362593-63362612 Msa1261070:CDS 20.0%
!! AGAGAAAAGACAAAAATAAT+TGG - chr8_2:63363411-63363430 None:intergenic 20.0%
!! GTACTAACATTATATTGTTT+AGG + chr8_2:63363702-63363721 Msa1261070:intron 20.0%
!! AAATGAAACATGATATAACT+TGG + chr8_2:63364032-63364051 Msa1261070:intron 20.0%
!! ATATGTGACTAATTAATTAG+GGG - chr8_2:63364161-63364180 None:intergenic 20.0%
!! CAATATGTGACTAATTAATT+AGG - chr8_2:63364163-63364182 None:intergenic 20.0%
!! ATATTATAAGACATGTAGAT+TGG - chr8_2:63364647-63364666 None:intergenic 20.0%
!!! TCCAAATTTCATTTATTTTC+TGG + chr8_2:63364762-63364781 Msa1261070:three_prime_UTR 20.0%
!! ACCAGAAAATAAATGAAATT+TGG - chr8_2:63364766-63364785 None:intergenic 20.0%
! TTTGGAAAAAAATTGGACTA+TGG - chr8_2:63360065-63360084 None:intergenic 25.0%
! GGAAATGAGATTATTTAAAC+AGG - chr8_2:63360106-63360125 None:intergenic 25.0%
!!! TCTCTTCTTTTCTTAATTTG+TGG - chr8_2:63360127-63360146 None:intergenic 25.0%
!! TTAATTTGAAAAGCACGTTA+AGG - chr8_2:63360312-63360331 None:intergenic 25.0%
! GATGAAAAATGCAGAAAAAA+CGG - chr8_2:63360409-63360428 None:intergenic 25.0%
! GCAAAACAAGAAAAGTAAAA+AGG - chr8_2:63360599-63360618 None:intergenic 25.0%
!! AGTGATAGTGAAAAAAACAA+AGG - chr8_2:63360790-63360809 None:intergenic 25.0%
!!! TTTGTTTTTTTCACTATCAC+TGG + chr8_2:63360789-63360808 Msa1261070:intron 25.0%
!!! TTGTTTTTTTCACTATCACT+GGG + chr8_2:63360790-63360809 Msa1261070:intron 25.0%
! CAGAAGTTGCAAATATTATA+TGG + chr8_2:63360935-63360954 Msa1261070:intron 25.0%
!! TGAGAGAAAAGGTATAATAA+AGG - chr8_2:63361016-63361035 None:intergenic 25.0%
!! TTATACCTTTTCTCTCATTT+AGG + chr8_2:63361019-63361038 Msa1261070:intron 25.0%
! TACAAAGAGAAACATAAGTT+TGG - chr8_2:63361316-63361335 None:intergenic 25.0%
!!! ATGTTGCTATTGTTTGTTAT+TGG + chr8_2:63361359-63361378 Msa1261070:intron 25.0%
!!! TGTTGCTATTGTTTGTTATT+GGG + chr8_2:63361360-63361379 Msa1261070:intron 25.0%
! AAAATAGAATCTCATTATGG+TGG + chr8_2:63361470-63361489 Msa1261070:exon 25.0%
! TACAATAATGAATCATTTGC+AGG + chr8_2:63361950-63361969 Msa1261070:CDS 25.0%
!! TGAATCTTTATTTATGGTCT+TGG + chr8_2:63361981-63362000 Msa1261070:intron 25.0%
!! GAATCTTTATTTATGGTCTT+GGG + chr8_2:63361982-63362001 Msa1261070:intron 25.0%
! TATACATATAAGCTTGTATG+AGG - chr8_2:63362066-63362085 None:intergenic 25.0%
! ACTTAATCATGTTAAAACTG+CGG + chr8_2:63362118-63362137 Msa1261070:CDS 25.0%
! TGTGCAAAAAGAACTTAATA+TGG + chr8_2:63362177-63362196 Msa1261070:CDS 25.0%
! GTGCAAAAAGAACTTAATAT+GGG + chr8_2:63362178-63362197 Msa1261070:CDS 25.0%
!!! GTTTTGATCTTTATAAGGAA+TGG + chr8_2:63362324-63362343 Msa1261070:intron 25.0%
! AAGTTAGATAATCTGTTATG+TGG + chr8_2:63362443-63362462 Msa1261070:intron 25.0%
!! CTTTTACGTGATTATAATAC+TGG + chr8_2:63362592-63362611 Msa1261070:CDS 25.0%
! TTTACGTGATTATAATACTG+GGG + chr8_2:63362594-63362613 Msa1261070:CDS 25.0%
! TTTCAAAACAAGTTTATTGC+TGG - chr8_2:63362686-63362705 None:intergenic 25.0%
!!! AGCAATAAACTTGTTTTGAA+AGG + chr8_2:63362685-63362704 Msa1261070:intron 25.0%
!!! CATCTATCATTTTTTGATCT+TGG + chr8_2:63362988-63363007 Msa1261070:intron 25.0%
! ATACCAATAACAACAAAGAA+TGG - chr8_2:63363214-63363233 None:intergenic 25.0%
! ACACAGTATGTAATCTAATT+AGG - chr8_2:63363275-63363294 None:intergenic 25.0%
!!! ATCATAATTTGACTAGCTTA+AGG + chr8_2:63363502-63363521 Msa1261070:intron 25.0%
! TAACATTATATTGTTTAGGG+TGG + chr8_2:63363706-63363725 Msa1261070:intron 25.0%
!! AACATTATATTGTTTAGGGT+GGG + chr8_2:63363707-63363726 Msa1261070:intron 25.0%
! GCTGATGAAAATTATTGATA+TGG + chr8_2:63363631-63363650 Msa1261070:intron 25.0%
! TTAGAAAAGAACTTTATCGT+AGG - chr8_2:63363796-63363815 None:intergenic 25.0%
!!! ATCTTAGACTTTGAGATATA+AGG - chr8_2:63363922-63363941 None:intergenic 25.0%
!!! AAGTATTTTATTTGCCATAG+TGG + chr8_2:63363943-63363962 Msa1261070:intron 25.0%
! TTACAGAAAGTTAAACAACA+CGG + chr8_2:63364099-63364118 Msa1261070:intron 25.0%
! TATGTGACTAATTAATTAGG+GGG - chr8_2:63364160-63364179 None:intergenic 25.0%
!!! TTAGTCACATATTGATTTCT+TGG + chr8_2:63364169-63364188 Msa1261070:intron 25.0%
!!! TTGTTTAGTTTGTTATGTGA+TGG + chr8_2:63364209-63364228 Msa1261070:intron 25.0%
!!! TGTTTAGTTTGTTATGTGAT+GGG + chr8_2:63364210-63364229 Msa1261070:intron 25.0%
! GCTAATTACAATGAGATATA+TGG - chr8_2:63364715-63364734 None:intergenic 25.0%
! ATTGTTTGATTAAAATGGCT+AGG + chr8_2:63364821-63364840 Msa1261070:three_prime_UTR 25.0%
!! AGAAAATTGCATCTTTAGAA+GGG - chr8_2:63364877-63364896 None:intergenic 25.0%
! AAGAAAATTGCATCTTTAGA+AGG - chr8_2:63364878-63364897 None:intergenic 25.0%
!! TTTTGTTGGACTTAAAAAGA+AGG + chr8_2:63365169-63365188 Msa1261070:intron 25.0%
TGGAGTAGTGATTGATTATA+GGG - chr8_2:63360034-63360053 None:intergenic 30.0%
TTGGAGTAGTGATTGATTAT+AGG - chr8_2:63360035-63360054 None:intergenic 30.0%
AAAAAATTGGACTATGGTGT+TGG - chr8_2:63360059-63360078 None:intergenic 30.0%
!!! ATTTTGAAATTATCGAGAGG+TGG + chr8_2:63360468-63360487 Msa1261070:intron 30.0%
TCCTAAGGAAAATTGTAGAA+CGG - chr8_2:63360712-63360731 None:intergenic 30.0%
! GATACGTTTTTACTCAAAGT+GGG - chr8_2:63360822-63360841 None:intergenic 30.0%
! TGATACGTTTTTACTCAAAG+TGG - chr8_2:63360823-63360842 None:intergenic 30.0%
!! TTTGTTCTCCTTTGAAATTG+AGG + chr8_2:63360890-63360909 Msa1261070:intron 30.0%
TTAAGCTACTTATCCAAACA+AGG - chr8_2:63361045-63361064 None:intergenic 30.0%
!!! CTGTTTTTATGAGCTAATCT+TGG + chr8_2:63361175-63361194 Msa1261070:intron 30.0%
GGGTGAAATATGATTATGTA+TGG + chr8_2:63361380-63361399 Msa1261070:intron 30.0%
!!! GGCGTTGATACATTTTTTTT+AGG + chr8_2:63361401-63361420 Msa1261070:intron 30.0%
! ACTTTGGTTCCATTAATCTT+GGG - chr8_2:63361642-63361661 None:intergenic 30.0%
! AACTTTGGTTCCATTAATCT+TGG - chr8_2:63361643-63361662 None:intergenic 30.0%
TTCTACAGATGTAGAAACTT+TGG - chr8_2:63361658-63361677 None:intergenic 30.0%
TGTAGAAAACTATAAGCATG+AGG + chr8_2:63361671-63361690 Msa1261070:CDS 30.0%
! TGCTATAACAACGATTTTCT+TGG + chr8_2:63361764-63361783 Msa1261070:CDS 30.0%
! CAATTTTGCCTATACCAAAA+GGG - chr8_2:63361851-63361870 None:intergenic 30.0%
! ACAATTTTGCCTATACCAAA+AGG - chr8_2:63361852-63361871 None:intergenic 30.0%
TCTATCAGATCGTATGAAAT+TGG + chr8_2:63361903-63361922 Msa1261070:CDS 30.0%
CTTAATCATGTTAAAACTGC+GGG + chr8_2:63362119-63362138 Msa1261070:CDS 30.0%
TTAATCATGTTAAAACTGCG+GGG + chr8_2:63362120-63362139 Msa1261070:CDS 30.0%
! AAGTTCTTTTTGCACATTTC+AGG - chr8_2:63362173-63362192 None:intergenic 30.0%
AACTGCTAAATAAATGCAGA+AGG - chr8_2:63362381-63362400 None:intergenic 30.0%
ATGTTGTTCATGTAGAAACT+TGG + chr8_2:63362530-63362549 Msa1261070:CDS 30.0%
TGTTGTTCATGTAGAAACTT+GGG + chr8_2:63362531-63362550 Msa1261070:CDS 30.0%
TTCATTACTAAGTATAAGCC+CGG + chr8_2:63362926-63362945 Msa1261070:intron 30.0%
!!! CTATCATTTTTTGATCTTGG+TGG + chr8_2:63362991-63363010 Msa1261070:intron 30.0%
!!! AGAGATAGGTTCTTATTTTG+TGG + chr8_2:63363096-63363115 Msa1261070:CDS 30.0%
!! TGTCCATTCTTTGTTGTTAT+TGG + chr8_2:63363208-63363227 Msa1261070:intron 30.0%
TAATTAGGAAACAGCATCTA+GGG - chr8_2:63363260-63363279 None:intergenic 30.0%
GTTAACAATGTGAAGTACAT+TGG + chr8_2:63363340-63363359 Msa1261070:CDS 30.0%
!!! AAGACTAGGTTTTTTTTGTG+AGG - chr8_2:63363563-63363582 None:intergenic 30.0%
! ATCAATAATTTTCATCAGCC+TGG - chr8_2:63363630-63363649 None:intergenic 30.0%
AGTTTCATTAGTGTTGTGTT+CGG + chr8_2:63363828-63363847 Msa1261070:intron 30.0%
!! TAGACTTTGAGATATAAGGT+GGG - chr8_2:63363918-63363937 None:intergenic 30.0%
!! TTAGACTTTGAGATATAAGG+TGG - chr8_2:63363919-63363938 None:intergenic 30.0%
TGAAACATGATATAACTTGG+TGG + chr8_2:63364035-63364054 Msa1261070:intron 30.0%
GTATACAATCACAGTTGTAT+TGG - chr8_2:63364953-63364972 None:intergenic 30.0%
ATAACATGCTTAAAGGAGAA+GGG - chr8_2:63365030-63365049 None:intergenic 30.0%
TATAACATGCTTAAAGGAGA+AGG - chr8_2:63365031-63365050 None:intergenic 30.0%
! TATCTTTTAATGCCATGTCT+AGG + chr8_2:63365063-63365082 Msa1261070:three_prime_UTR 30.0%
GGACTTAAAAAGAAGGTTTA+AGG + chr8_2:63365176-63365195 Msa1261070:three_prime_UTR 30.0%
! ATTTGTCTCATCTAAAGTGA+AGG + chr8_2:63365259-63365278 Msa1261070:three_prime_UTR 30.0%
! TTTGTCTCATCTAAAGTGAA+GGG + chr8_2:63365260-63365279 Msa1261070:three_prime_UTR 30.0%
TCAGAGGAAGAAGAAGTAAA+GGG - chr8_2:63360178-63360197 None:intergenic 35.0%
ATCAGAGGAAGAAGAAGTAA+AGG - chr8_2:63360179-63360198 None:intergenic 35.0%
AGAAATCGAGAATGAGAAGA+AGG - chr8_2:63360215-63360234 None:intergenic 35.0%
! TTTGCGGTGTTTTCTAGATT+CGG + chr8_2:63360614-63360633 Msa1261070:intron 35.0%
! TCCGTTCTACAATTTTCCTT+AGG + chr8_2:63360708-63360727 Msa1261070:intron 35.0%
! TCATTTTCTCACGTTTCCTA+AGG - chr8_2:63360727-63360746 None:intergenic 35.0%
CTAGTGAACCTCAATTTCAA+AGG - chr8_2:63360901-63360920 None:intergenic 35.0%
!! GTAGCTTAATTTGCAGCTTA+TGG + chr8_2:63361056-63361075 Msa1261070:intron 35.0%
TAAATCTAAACATGCGTCTG+CGG + chr8_2:63361584-63361603 Msa1261070:CDS 35.0%
TGGTATAGGCAAAATTGTTC+AGG + chr8_2:63361854-63361873 Msa1261070:CDS 35.0%
ATAGGCAAAATTGTTCAGGA+TGG + chr8_2:63361858-63361877 Msa1261070:CDS 35.0%
! TGGGAGATAAAAAGTTGGTT+AGG + chr8_2:63362001-63362020 Msa1261070:intron 35.0%
CATACAACAAGTGATGAGTA+TGG - chr8_2:63362256-63362275 None:intergenic 35.0%
CAAAACAACTAGCAGAGAAA+TGG - chr8_2:63362310-63362329 None:intergenic 35.0%
! TGTACCTTGTTTATCAGAGT+TGG + chr8_2:63362403-63362422 Msa1261070:intron 35.0%
AACGTGTGATTTATATGCAC+CGG - chr8_2:63362948-63362967 None:intergenic 35.0%
!!! TCATTTTTTGATCTTGGTGG+TGG + chr8_2:63362994-63363013 Msa1261070:intron 35.0%
CTAATTAGGAAACAGCATCT+AGG - chr8_2:63363261-63363280 None:intergenic 35.0%
TCAAGATATTTGTCCGTGAA+AGG - chr8_2:63363436-63363455 None:intergenic 35.0%
! AAACCTAGTCTTTAGTCTGT+TGG + chr8_2:63363571-63363590 Msa1261070:intron 35.0%
! AACCTAGTCTTTAGTCTGTT+GGG + chr8_2:63363572-63363591 Msa1261070:intron 35.0%
GTCTTTAGTCTGCAAAGTAA+GGG + chr8_2:63363594-63363613 Msa1261070:intron 35.0%
! TGGTAATGATACTAGAGAGA+GGG - chr8_2:63363740-63363759 None:intergenic 35.0%
TCAAATGTCAATGACCACTA+TGG - chr8_2:63363960-63363979 None:intergenic 35.0%
! ATCTGGGATTCTTAACCAAA+GGG + chr8_2:63364241-63364260 Msa1261070:intron 35.0%
AAAATCAAAACACAGCCCTT+TGG - chr8_2:63364259-63364278 None:intergenic 35.0%
!! TATGACTTTGGAGTATAGGA+GGG + chr8_2:63364325-63364344 Msa1261070:CDS 35.0%
! ATTTGCTTCGACTTGAAGAT+GGG + chr8_2:63364441-63364460 Msa1261070:CDS 35.0%
ACAATATCAAAGTGGTTCAC+AGG - chr8_2:63364506-63364525 None:intergenic 35.0%
CCTGATTCACAATATCAAAG+TGG - chr8_2:63364514-63364533 None:intergenic 35.0%
CCACTTTGATATTGTGAATC+AGG + chr8_2:63364511-63364530 Msa1261070:CDS 35.0%
CATGAACCATTCAAAACCTT+AGG - chr8_2:63364552-63364571 None:intergenic 35.0%
!!! CTAAGGTTTTGAATGGTTCA+TGG + chr8_2:63364550-63364569 Msa1261070:exon 35.0%
TTAGAACCAGTTTAACCCTA+GGG - chr8_2:63364597-63364616 None:intergenic 35.0%
CCAAAGCAACACAAATTAGA+AGG - chr8_2:63364671-63364690 None:intergenic 35.0%
!! CCTTCTAATTTGTGTTGCTT+TGG + chr8_2:63364668-63364687 Msa1261070:three_prime_UTR 35.0%
ACGTTTGTATACATACAAGC+TGG - chr8_2:63364977-63364996 None:intergenic 35.0%
ACAATAACGTGTTCAGTTCA+AGG + chr8_2:63365227-63365246 Msa1261070:three_prime_UTR 35.0%
! TTGTCTCATCTAAAGTGAAG+GGG + chr8_2:63365261-63365280 Msa1261070:three_prime_UTR 35.0%
! ATTGGACTATGGTGTTGGAT+TGG - chr8_2:63360054-63360073 None:intergenic 40.0%
TCGAGAATGAGAAGAAGGAA+GGG - chr8_2:63360210-63360229 None:intergenic 40.0%
ATCGAGAATGAGAAGAAGGA+AGG - chr8_2:63360211-63360230 None:intergenic 40.0%
CTTTCTTCTCTTCTTCACTC+TGG + chr8_2:63360249-63360268 Msa1261070:five_prime_UTR 40.0%
TAAGGTGAAGTGTAGATCAG+AGG - chr8_2:63360294-63360313 None:intergenic 40.0%
CAAGGCCTAAATGAGAGAAA+AGG - chr8_2:63361027-63361046 None:intergenic 40.0%
!! TCTCTCATTTAGGCCTTGTT+TGG + chr8_2:63361029-63361048 Msa1261070:intron 40.0%
GAGCGCTAACAATACTGTTT+AGG - chr8_2:63361263-63361282 None:intergenic 40.0%
GCTGCATGTTAAATTGAAGC+AGG - chr8_2:63361442-63361461 None:intergenic 40.0%
AGTAACAGGGAAAAAAGCAG+CGG - chr8_2:63361502-63361521 None:intergenic 40.0%
GTTTAGATTTAAGCCCTCCA+AGG - chr8_2:63361575-63361594 None:intergenic 40.0%
AAATCTAAACATGCGTCTGC+GGG + chr8_2:63361585-63361604 Msa1261070:CDS 40.0%
TGGTTCCATTAATCTTGGGA+GGG - chr8_2:63361638-63361657 None:intergenic 40.0%
TTGGTTCCATTAATCTTGGG+AGG - chr8_2:63361639-63361658 None:intergenic 40.0%
!! CTGGTTGATAAAAGTCCTAG+AGG - chr8_2:63361718-63361737 None:intergenic 40.0%
TTATCAACCAGTTACCTGAC+TGG + chr8_2:63361727-63361746 Msa1261070:CDS 40.0%
! CTGATTGACCCTTTTGGTAT+AGG + chr8_2:63361840-63361859 Msa1261070:CDS 40.0%
CAGATCGTATGAAATTGGTG+CGG + chr8_2:63361908-63361927 Msa1261070:CDS 40.0%
GGTCTTGGGAGATAAAAAGT+TGG + chr8_2:63361996-63362015 Msa1261070:intron 40.0%
TCGTTGTGCAGAATAGATAG+TGG + chr8_2:63362037-63362056 Msa1261070:intron 40.0%
ACTTAATATGGGTAGTTGCG+CGG + chr8_2:63362189-63362208 Msa1261070:CDS 40.0%
TTGTTGATCGTTATCCTACG+TGG + chr8_2:63362222-63362241 Msa1261070:CDS 40.0%
GAAGCCAACTCTGATAAACA+AGG - chr8_2:63362410-63362429 None:intergenic 40.0%
! GTTTATCAGAGTTGGCTTCT+TGG + chr8_2:63362411-63362430 Msa1261070:intron 40.0%
AGAGAATGATTTCTACCTGG+AGG - chr8_2:63362635-63362654 None:intergenic 40.0%
TCCAGGTAGAAATCATTCTC+TGG + chr8_2:63362634-63362653 Msa1261070:intron 40.0%
TCCAGAGAATGATTTCTACC+TGG - chr8_2:63362638-63362657 None:intergenic 40.0%
! AGTTTATTGCTGGCTGCAAA+AGG - chr8_2:63362676-63362695 None:intergenic 40.0%
! GGTTTTCTGAATGTGCATGA+AGG + chr8_2:63362706-63362725 Msa1261070:intron 40.0%
ACGTGTGATTTATATGCACC+GGG - chr8_2:63362947-63362966 None:intergenic 40.0%
! TTTTCGTGATCGACAGTGTT+TGG + chr8_2:63363017-63363036 Msa1261070:intron 40.0%
TTTCGTGATCGACAGTGTTT+GGG + chr8_2:63363018-63363037 Msa1261070:intron 40.0%
CAGAAAGCTGTCCAAAATTC+CGG + chr8_2:63363060-63363079 Msa1261070:CDS 40.0%
! TCTGACTTCTTCCGGAATTT+TGG - chr8_2:63363074-63363093 None:intergenic 40.0%
AAAATTCCGGAAGAAGTCAG+AGG + chr8_2:63363073-63363092 Msa1261070:CDS 40.0%
CTGTCATCTTCTTCCAGAAT+TGG - chr8_2:63363130-63363149 None:intergenic 40.0%
GGAAGAAGATGACAGAAAAC+TGG + chr8_2:63363135-63363154 Msa1261070:CDS 40.0%
! TAAACTTGATGACAGCACAG+CGG + chr8_2:63363159-63363178 Msa1261070:CDS 40.0%
ACATCTAGATCACTCCATCT+AGG - chr8_2:63363310-63363329 None:intergenic 40.0%
ACAATGTGAAGTACATTGGC+TGG + chr8_2:63363344-63363363 Msa1261070:CDS 40.0%
! GTCTTTTCTCTCTCCTTTCA+CGG + chr8_2:63363420-63363439 Msa1261070:intron 40.0%
!!! GACTAGCTTAAGGTCTTTTG+CGG + chr8_2:63363512-63363531 Msa1261070:intron 40.0%
!! ACTAGCTTAAGGTCTTTTGC+GGG + chr8_2:63363513-63363532 Msa1261070:intron 40.0%
GGTCTTTAGTCTGCAAAGTA+AGG + chr8_2:63363593-63363612 Msa1261070:intron 40.0%
! CTGGTAATGATACTAGAGAG+AGG - chr8_2:63363741-63363760 None:intergenic 40.0%
CTCTCTCTAGTATCATTACC+AGG + chr8_2:63363739-63363758 Msa1261070:intron 40.0%
ATTGACATTTGATGCCTCAC+AGG + chr8_2:63363968-63363987 Msa1261070:intron 40.0%
! CATCTGGGATTCTTAACCAA+AGG + chr8_2:63364240-63364259 Msa1261070:intron 40.0%
! TGAGCTTTGTGCTATGACTT+TGG + chr8_2:63364313-63364332 Msa1261070:CDS 40.0%
!! GTGCTATGACTTTGGAGTAT+AGG + chr8_2:63364321-63364340 Msa1261070:CDS 40.0%
!! CTATGACTTTGGAGTATAGG+AGG + chr8_2:63364324-63364343 Msa1261070:CDS 40.0%
GGCATCAGATACAGAAGTTA+GGG - chr8_2:63364378-63364397 None:intergenic 40.0%
CTAACTTCTGTATCTGATGC+CGG + chr8_2:63364377-63364396 Msa1261070:CDS 40.0%
TTGAGCTAGATTACCAACAC+CGG - chr8_2:63364399-63364418 None:intergenic 40.0%
!! GTTGGTAATCTAGCTCAAAG+CGG + chr8_2:63364401-63364420 Msa1261070:CDS 40.0%
! CATTTGCTTCGACTTGAAGA+TGG + chr8_2:63364440-63364459 Msa1261070:CDS 40.0%
! TTTGCTTCGACTTGAAGATG+GGG + chr8_2:63364442-63364461 Msa1261070:CDS 40.0%
TCAAAGTGGTTCACAGGTTT+GGG - chr8_2:63364500-63364519 None:intergenic 40.0%
ATCAAAGTGGTTCACAGGTT+TGG - chr8_2:63364501-63364520 None:intergenic 40.0%
!!! GAAGCACCTAAGGTTTTGAA+TGG + chr8_2:63364543-63364562 Msa1261070:exon 40.0%
!!! GGTTTTGAATGGTTCATGGT+TGG + chr8_2:63364554-63364573 Msa1261070:three_prime_UTR 40.0%
ATCATATCAGTCTCTTCCCT+AGG + chr8_2:63364578-63364597 Msa1261070:three_prime_UTR 40.0%
TCATATCAGTCTCTTCCCTA+GGG + chr8_2:63364579-63364598 Msa1261070:three_prime_UTR 40.0%
GTTAGAACCAGTTTAACCCT+AGG - chr8_2:63364598-63364617 None:intergenic 40.0%
ACACAAGCAAAACTCTTCAG+AGG - chr8_2:63364620-63364639 None:intergenic 40.0%
!! TGTTGCTTTGGTGCGTAAAA+GGG + chr8_2:63364680-63364699 Msa1261070:three_prime_UTR 40.0%
!! TTTCTGGTTGCTATAGTGCT+AGG + chr8_2:63364778-63364797 Msa1261070:three_prime_UTR 40.0%
ATGTATACAAACGTCCCACA+TGG + chr8_2:63364983-63365002 Msa1261070:three_prime_UTR 40.0%
TGTATACAAACGTCCCACAT+GGG + chr8_2:63364984-63365003 Msa1261070:three_prime_UTR 40.0%
! TGCCATGTCTAGGATATATG+TGG + chr8_2:63365073-63365092 Msa1261070:three_prime_UTR 40.0%
! GCCATGTCTAGGATATATGT+GGG + chr8_2:63365074-63365093 Msa1261070:three_prime_UTR 40.0%
! CCATGTCTAGGATATATGTG+GGG + chr8_2:63365075-63365094 Msa1261070:three_prime_UTR 40.0%
! CATGTCTAGGATATATGTGG+GGG + chr8_2:63365076-63365095 Msa1261070:three_prime_UTR 40.0%
AGACACGATAGCACATGTAA+AGG - chr8_2:63365102-63365121 None:intergenic 40.0%
! TGTCTAGTCCACATTTTGCT+TGG + chr8_2:63365117-63365136 Msa1261070:three_prime_UTR 40.0%
CATAGGTACCAAGCAAAATG+TGG - chr8_2:63365128-63365147 None:intergenic 40.0%
TTGCTTGGTACCTATGATTG+TGG + chr8_2:63365132-63365151 Msa1261070:intron 40.0%
! TCGTCATTCGTGTCTTTTGT+TGG + chr8_2:63365155-63365174 Msa1261070:intron 40.0%
GTTATTGTGCATGTACCAAG+CGG - chr8_2:63365215-63365234 None:intergenic 40.0%
GAATGAGAAGAAGGAAGGGA+AGG - chr8_2:63360206-63360225 None:intergenic 45.0%
TTGCGAGCTTCGATCTTTGA+AGG - chr8_2:63360366-63360385 None:intergenic 45.0%
! ATTTTGTTGCCACCAGAGTC+CGG - chr8_2:63361534-63361553 None:intergenic 45.0%
GACTCTGGTGGCAACAAAAT+TGG + chr8_2:63361534-63361553 Msa1261070:CDS 45.0%
TCTGGTGGCAACAAAATTGG+TGG + chr8_2:63361537-63361556 Msa1261070:CDS 45.0%
! GTGGCAACAAAATTGGTGGT+GGG + chr8_2:63361541-63361560 Msa1261070:CDS 45.0%
! ATTAATCTTGGGAGGGGCAT+GGG - chr8_2:63361631-63361650 None:intergenic 45.0%
GGTTCCATTAATCTTGGGAG+GGG - chr8_2:63361637-63361656 None:intergenic 45.0%
TCTTGGCAGCTGAAAAACAG+TGG + chr8_2:63361781-63361800 Msa1261070:CDS 45.0%
AACAGTGGATGATGCTCGAT+TGG + chr8_2:63361796-63361815 Msa1261070:CDS 45.0%
!! GACATGCTGATTGACCCTTT+TGG + chr8_2:63361834-63361853 Msa1261070:CDS 45.0%
TGAAATTGGTGCGGATCGAA+CGG + chr8_2:63361917-63361936 Msa1261070:CDS 45.0%
GTATGGATGACTTACCACGT+AGG - chr8_2:63362239-63362258 None:intergenic 45.0%
GAAACTTGGGTTTCTGCATC+AGG + chr8_2:63362544-63362563 Msa1261070:CDS 45.0%
GTTTCTGCATCAGGCAAGAA+TGG + chr8_2:63362553-63362572 Msa1261070:CDS 45.0%
AGAATGGTATGCGTCGTGAT+TGG + chr8_2:63362569-63362588 Msa1261070:CDS 45.0%
! CGGAATTTTGGACAGCTTTC+TGG - chr8_2:63363062-63363081 None:intergenic 45.0%
ATCTCTCCTCTGACTTCTTC+CGG - chr8_2:63363082-63363101 None:intergenic 45.0%
GAAGAAGTCAGAGGAGAGAT+AGG + chr8_2:63363082-63363101 Msa1261070:CDS 45.0%
TGTGGAATCTGCACCAATTC+TGG + chr8_2:63363114-63363133 Msa1261070:CDS 45.0%
GACATACACTTAAACCCGAG+CGG - chr8_2:63363192-63363211 None:intergenic 45.0%
! GAAGTACATTGGCTGGATTC+TGG + chr8_2:63363351-63363370 Msa1261070:CDS 45.0%
GACCCAACAGACTAAAGACT+AGG - chr8_2:63363577-63363596 None:intergenic 45.0%
! AGTAAGGGTGTGCTCTTATG+AGG + chr8_2:63363609-63363628 Msa1261070:intron 45.0%
CATTAGTGTTGTGTTCGGAG+TGG + chr8_2:63363833-63363852 Msa1261070:intron 45.0%
AGTGAAGGAGCGAAATGACA+AGG - chr8_2:63363875-63363894 None:intergenic 45.0%
CTCACAAGTCAATACCTGTG+AGG - chr8_2:63363985-63364004 None:intergenic 45.0%
!! TATTGACTTGTGAGCAAGCG+AGG + chr8_2:63363991-63364010 Msa1261070:intron 45.0%
!! ATTGACTTGTGAGCAAGCGA+GGG + chr8_2:63363992-63364011 Msa1261070:intron 45.0%
!! TGTGATGGGTTGATCACATC+TGG + chr8_2:63364224-63364243 Msa1261070:intron 45.0%
!! GTGATGGGTTGATCACATCT+GGG + chr8_2:63364225-63364244 Msa1261070:intron 45.0%
CAGATACAGAAGTTAGGGAC+TGG - chr8_2:63364373-63364392 None:intergenic 45.0%
CGGCATCAGATACAGAAGTT+AGG - chr8_2:63364379-63364398 None:intergenic 45.0%
CTTCAAGTCGAAGCAAATGC+TGG - chr8_2:63364439-63364458 None:intergenic 45.0%
AAGATGGGGCTGAAATTGTG+AGG + chr8_2:63364456-63364475 Msa1261070:CDS 45.0%
AGATGGGGCTGAAATTGTGA+GGG + chr8_2:63364457-63364476 Msa1261070:CDS 45.0%
TTGTGAGGGGTAGAACTAAG+TGG + chr8_2:63364471-63364490 Msa1261070:CDS 45.0%
ATTGTGAATCAGGTTCCAGC+AGG + chr8_2:63364521-63364540 Msa1261070:CDS 45.0%
TCTCTTCCCTAGGGTTAAAC+TGG + chr8_2:63364588-63364607 Msa1261070:three_prime_UTR 45.0%
!! GTGTTGCTTTGGTGCGTAAA+AGG + chr8_2:63364679-63364698 Msa1261070:three_prime_UTR 45.0%
! GTTGCTTTGGTGCGTAAAAG+GGG + chr8_2:63364681-63364700 Msa1261070:three_prime_UTR 45.0%
! TTGCTTTGGTGCGTAAAAGG+GGG + chr8_2:63364682-63364701 Msa1261070:three_prime_UTR 45.0%
ACGTCCCACATGGGAATTAT+TGG + chr8_2:63364993-63365012 Msa1261070:three_prime_UTR 45.0%
CGTCCCACATGGGAATTATT+GGG + chr8_2:63364994-63365013 Msa1261070:three_prime_UTR 45.0%
GCACCCAATAATTCCCATGT+GGG - chr8_2:63365000-63365019 None:intergenic 45.0%
TGCACCCAATAATTCCCATG+TGG - chr8_2:63365001-63365020 None:intergenic 45.0%
CCCCACATATATCCTAGACA+TGG - chr8_2:63365078-63365097 None:intergenic 45.0%
CGAATGACGACCACAATCAT+AGG - chr8_2:63365145-63365164 None:intergenic 45.0%
!!! TTTTTTTTTTTTATTAGTAT+TGG + chr8_2:63360979-63360998 Msa1261070:intron 5.0%
GGAAGGGAAGGTGAAATCAG+AGG - chr8_2:63360194-63360213 None:intergenic 50.0%
CCGGCAAGGATGAAGTAACA+GGG - chr8_2:63361515-63361534 None:intergenic 50.0%
! CCCTGTTACTTCATCCTTGC+CGG + chr8_2:63361512-63361531 Msa1261070:CDS 50.0%
TCCGGCAAGGATGAAGTAAC+AGG - chr8_2:63361516-63361535 None:intergenic 50.0%
GGTGGCAACAAAATTGGTGG+TGG + chr8_2:63361540-63361559 Msa1261070:CDS 50.0%
CATTAATCTTGGGAGGGGCA+TGG - chr8_2:63361632-63361651 None:intergenic 50.0%
CATGCCCCTCCCAAGATTAA+TGG + chr8_2:63361630-63361649 Msa1261070:CDS 50.0%
TGCTCGATTGGAAGCCAAGA+CGG + chr8_2:63361808-63361827 Msa1261070:CDS 50.0%
ATCAGCATGTCAGACCGTCT+TGG - chr8_2:63361825-63361844 None:intergenic 50.0%
GTTAAAACTGCGGGGCTTCT+TGG + chr8_2:63362128-63362147 Msa1261070:CDS 50.0%
AAATCTTGACGAGAGCCTCC+AGG + chr8_2:63362617-63362636 Msa1261070:CDS 50.0%
! TTGCTGGCTGCAAAAGGAAG+AGG - chr8_2:63362670-63362689 None:intergenic 50.0%
!! CACAGCGGATTATATCCGCT+CGG + chr8_2:63363174-63363193 Msa1261070:CDS 50.0%
!! ACAGCGGATTATATCCGCTC+GGG + chr8_2:63363175-63363194 Msa1261070:CDS 50.0%
GTCTGTGCTTTCAGCCTAGA+TGG + chr8_2:63363293-63363312 Msa1261070:intron 50.0%
! GTACATTGGCTGGATTCTGG+AGG + chr8_2:63363354-63363373 Msa1261070:CDS 50.0%
GAGCGAAATGACAAGGAGAG+AGG - chr8_2:63363868-63363887 None:intergenic 50.0%
TAAGGTGGGCCTCATTGTTG+AGG - chr8_2:63363904-63363923 None:intergenic 50.0%
TGACTCTCGAGGATTGACTG+TGG - chr8_2:63364293-63364312 None:intergenic 50.0%
CACAAAGCTCATGACTCTCG+AGG - chr8_2:63364304-63364323 None:intergenic 50.0%
TTGGAGTATAGGAGGGAGTG+TGG + chr8_2:63364332-63364351 Msa1261070:CDS 50.0%
TCTGTATCTGATGCCGGTGT+TGG + chr8_2:63364383-63364402 Msa1261070:CDS 50.0%
! GTAATCTAGCTCAAAGCGGC+CGG + chr8_2:63364405-63364424 Msa1261070:CDS 50.0%
GCAAATGCTGGCACTCAATC+CGG - chr8_2:63364427-63364446 None:intergenic 50.0%
GATGGGGCTGAAATTGTGAG+GGG + chr8_2:63364458-63364477 Msa1261070:CDS 50.0%
TGAGGGGTAGAACTAAGTGG+AGG + chr8_2:63364474-63364493 Msa1261070:CDS 50.0%
AAACCTTAGGTGCTTCCTGC+TGG - chr8_2:63364539-63364558 None:intergenic 50.0%
! TGCTTTGGTGCGTAAAAGGG+GGG + chr8_2:63364683-63364702 Msa1261070:three_prime_UTR 50.0%
GCAGAGAGATAGAGTAGAGC+AGG - chr8_2:63364739-63364758 None:intergenic 50.0%
TGGTTGCTATAGTGCTAGGC+TGG + chr8_2:63364782-63364801 Msa1261070:three_prime_UTR 50.0%
! GGTTGATGTTCTTTGCCGCT+TGG + chr8_2:63365197-63365216 Msa1261070:three_prime_UTR 50.0%
AGGGAAAAAAGCAGCGGCAG+TGG - chr8_2:63361496-63361515 None:intergenic 55.0%
ACTTCATCCTTGCCGGACTC+TGG + chr8_2:63361519-63361538 Msa1261070:CDS 55.0%
GTGGGAATGCGAACCTTGGA+GGG + chr8_2:63361559-63361578 Msa1261070:CDS 55.0%
GTCTGCGGGCTTGCAAGTAA+AGG + chr8_2:63361599-63361618 Msa1261070:CDS 55.0%
GTCCTAGAGGATTGCGACGA+CGG - chr8_2:63361705-63361724 None:intergenic 55.0%
GCATGCTCCAGTCAGGTAAC+TGG - chr8_2:63361737-63361756 None:intergenic 55.0%
! GCAAGAAGCATGCTCCAGTC+AGG - chr8_2:63361744-63361763 None:intergenic 55.0%
!! GGGCTTCTTGGTGATGGCTT+TGG + chr8_2:63362140-63362159 Msa1261070:CDS 55.0%
TTGTTGAGGTGGGGGAGTGA+AGG - chr8_2:63363890-63363909 None:intergenic 55.0%
ACTCCCCCACCTCAACAATG+AGG + chr8_2:63363892-63363911 Msa1261070:intron 55.0%
TGGGCCTCATTGTTGAGGTG+GGG - chr8_2:63363899-63363918 None:intergenic 55.0%
GTGGGCCTCATTGTTGAGGT+GGG - chr8_2:63363900-63363919 None:intergenic 55.0%
! GTATAGGAGGGAGTGTGGCA+AGG + chr8_2:63364337-63364356 Msa1261070:CDS 55.0%
!! GTTCCAGCAGGAAGCACCTA+AGG + chr8_2:63364533-63364552 Msa1261070:CDS 55.0%
TCATCCTTGCCGGACTCTGG+TGG + chr8_2:63361522-63361541 Msa1261070:CDS 60.0%
!! GGTGGTGGGAATGCGAACCT+TGG + chr8_2:63361555-63361574 Msa1261070:CDS 60.0%
GGTGGGAATGCGAACCTTGG+AGG + chr8_2:63361558-63361577 Msa1261070:CDS 60.0%
TGCCGTCGTCGCAATCCTCT+AGG + chr8_2:63361700-63361719 Msa1261070:CDS 60.0%
ACTGCGGGGCTTCTTGGTGA+TGG + chr8_2:63362134-63362153 Msa1261070:CDS 60.0%
GGGCCTCATTGTTGAGGTGG+GGG - chr8_2:63363898-63363917 None:intergenic 60.0%
GGTGGGCCTCATTGTTGAGG+TGG - chr8_2:63363901-63363920 None:intergenic 60.0%
GTTGCCACCAGAGTCCGGCA+AGG - chr8_2:63361529-63361548 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 63360023 63365285 63360023 ID=Msa1261070;Name=Msa1261070
chr8_2 mRNA 63360023 63365285 63360023 ID=Msa1261070-mRNA-1;Parent=Msa1261070;Name=Msa1261070-mRNA-1;_AED=0.08;_eAED=0.08;_QI=273|1|1|1|0.71|0.5|8|705|414
chr8_2 exon 63360023 63360270 63360023 ID=Msa1261070-mRNA-1:exon:20261;Parent=Msa1261070-mRNA-1
chr8_2 exon 63361461 63361971 63361461 ID=Msa1261070-mRNA-1:exon:20262;Parent=Msa1261070-mRNA-1
chr8_2 exon 63362110 63362243 63362110 ID=Msa1261070-mRNA-1:exon:20263;Parent=Msa1261070-mRNA-1
chr8_2 exon 63362525 63362638 63362525 ID=Msa1261070-mRNA-1:exon:20264;Parent=Msa1261070-mRNA-1
chr8_2 exon 63363033 63363204 63363033 ID=Msa1261070-mRNA-1:exon:20265;Parent=Msa1261070-mRNA-1
chr8_2 exon 63363307 63363375 63363307 ID=Msa1261070-mRNA-1:exon:20266;Parent=Msa1261070-mRNA-1
chr8_2 exon 63364284 63365144 63364284 ID=Msa1261070-mRNA-1:exon:20267;Parent=Msa1261070-mRNA-1
chr8_2 exon 63365172 63365285 63365172 ID=Msa1261070-mRNA-1:exon:20268;Parent=Msa1261070-mRNA-1
chr8_2 five_prime_UTR 63360023 63360270 63360023 ID=Msa1261070-mRNA-1:five_prime_utr;Parent=Msa1261070-mRNA-1
chr8_2 five_prime_UTR 63361461 63361485 63361461 ID=Msa1261070-mRNA-1:five_prime_utr;Parent=Msa1261070-mRNA-1
chr8_2 CDS 63361486 63361971 63361486 ID=Msa1261070-mRNA-1:cds;Parent=Msa1261070-mRNA-1
chr8_2 CDS 63362110 63362243 63362110 ID=Msa1261070-mRNA-1:cds;Parent=Msa1261070-mRNA-1
chr8_2 CDS 63362525 63362638 63362525 ID=Msa1261070-mRNA-1:cds;Parent=Msa1261070-mRNA-1
chr8_2 CDS 63363033 63363204 63363033 ID=Msa1261070-mRNA-1:cds;Parent=Msa1261070-mRNA-1
chr8_2 CDS 63363307 63363375 63363307 ID=Msa1261070-mRNA-1:cds;Parent=Msa1261070-mRNA-1
chr8_2 CDS 63364284 63364553 63364284 ID=Msa1261070-mRNA-1:cds;Parent=Msa1261070-mRNA-1
chr8_2 three_prime_UTR 63364554 63365144 63364554 ID=Msa1261070-mRNA-1:three_prime_utr;Parent=Msa1261070-mRNA-1
chr8_2 three_prime_UTR 63365172 63365285 63365172 ID=Msa1261070-mRNA-1:three_prime_utr;Parent=Msa1261070-mRNA-1
Gene Sequence

>Msa1261070

ATGGTGGCCACTGCCGCTGCTTTTTTCCCTGTTACTTCATCCTTGCCGGACTCTGGTGGCAACAAAATTGGTGGTGGGAATGCGAACCTTGGAGGGCTTAAATCTAAACATGCGTCTGCGGGCTTGCAAGTAAAGGCAAATGCCCATGCCCCTCCCAAGATTAATGGAACCAAAGTTTCTACATCTGTAGAAAACTATAAGCATGAGGATGTTTTGCCGTCGTCGCAATCCTCTAGGACTTTTATCAACCAGTTACCTGACTGGAGCATGCTTCTTGCTGCTATAACAACGATTTTCTTGGCAGCTGAAAAACAGTGGATGATGCTCGATTGGAAGCCAAGACGGTCTGACATGCTGATTGACCCTTTTGGTATAGGCAAAATTGTTCAGGATGGTCTTGTGTTCAGTGAAAACTTTTCTATCAGATCGTATGAAATTGGTGCGGATCGAACGGCGTCCATAGATACAATAATGAATCATTTGCAGGAAACTGCACTTAATCATGTTAAAACTGCGGGGCTTCTTGGTGATGGCTTTGGTTCTACGCCTGAAATGTGCAAAAAGAACTTAATATGGGTAGTTGCGCGGATGCAAGTTGTTGTTGATCGTTATCCTACGTGGGGAGATGTTGTTCATGTAGAAACTTGGGTTTCTGCATCAGGCAAGAATGGTATGCGTCGTGATTGGCTTTTACGTGATTATAATACTGGGGAAATCTTGACGAGAGCCTCCAGTGTTTGGGTCATGATGAATAAACATACCAGAAAGCTGTCCAAAATTCCGGAAGAAGTCAGAGGAGAGATAGGTTCTTATTTTGTGGAATCTGCACCAATTCTGGAAGAAGATGACAGAAAACTGGCTAAACTTGATGACAGCACAGCGGATTATATCCGCTCGGGTTTAAGTCCTAGATGGAGTGATCTAGATGTCAATCAGCATGTTAACAATGTGAAGTACATTGGCTGGATTCTGGAGAGTGCTCCACAGTCAATCCTCGAGAGTCATGAGCTTTGTGCTATGACTTTGGAGTATAGGAGGGAGTGTGGCAAGGACAGTGTGCTCCAGTCCCTAACTTCTGTATCTGATGCCGGTGTTGGTAATCTAGCTCAAAGCGGCCGGATTGAGTGCCAGCATTTGCTTCGACTTGAAGATGGGGCTGAAATTGTGAGGGGTAGAACTAAGTGGAGGCCCAAACCTGTGAACCACTTTGATATTGTGAATCAGGTTCCAGCAGGAAGCACCTAA

Protein sequence

>Msa1261070

MVATAAAFFPVTSSLPDSGGNKIGGGNANLGGLKSKHASAGLQVKANAHAPPKINGTKVSTSVENYKHEDVLPSSQSSRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRSDMLIDPFGIGKIVQDGLVFSENFSIRSYEIGADRTASIDTIMNHLQETALNHVKTAGLLGDGFGSTPEMCKKNLIWVVARMQVVVDRYPTWGDVVHVETWVSASGKNGMRRDWLLRDYNTGEILTRASSVWVMMNKHTRKLSKIPEEVRGEIGSYFVESAPILEEDDRKLAKLDDSTADYIRSGLSPRWSDLDVNQHVNNVKYIGWILESAPQSILESHELCAMTLEYRRECGKDSVLQSLTSVSDAGVGNLAQSGRIECQHLLRLEDGAEIVRGRTKWRPKPVNHFDIVNQVPAGST*