AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1275400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1275400 MtrunA17_Chr8g0339861 62.462 325 120 1 1 323 1 325 5.07e-150 430
Msa1275400 MtrunA17_Chr4g0000171 60.681 323 127 0 1 323 1 323 6.99e-150 424
Msa1275400 MtrunA17_Chr4g0013471 59.443 323 131 0 1 323 1 323 8.61e-146 416
Msa1275400 MtrunA17_Chr4g0000161 59.443 323 131 0 1 323 1 323 6.24e-145 412
Msa1275400 MtrunA17_Chr8g0381551 55.183 328 141 3 1 323 1 327 7.37e-134 384
Msa1275400 MtrunA17_Chr8g0381571 55.183 328 141 3 1 323 1 327 1.17e-131 383
Msa1275400 MtrunA17_Chr8g0381541 55.183 328 141 3 1 323 1 327 1.27e-131 384
Msa1275400 MtrunA17_Chr1g0161671 53.049 328 133 6 1 323 1 312 4.00e-109 320
Msa1275400 MtrunA17_Chr5g0400421 46.462 325 165 6 4 323 8 328 4.81e-85 264
Msa1275400 MtrunA17_Chr2g0293421 40.367 327 189 3 1 323 3 327 7.96e-84 261
Msa1275400 MtrunA17_Chr1g0161651 45.342 322 129 6 1 278 1 319 1.10e-83 256
Msa1275400 MtrunA17_Chr2g0293411 40.123 324 186 4 6 323 4 325 1.35e-81 255
Msa1275400 MtrunA17_Chr5g0400411 42.073 328 174 8 4 323 8 327 7.73e-69 222
Msa1275400 MtrunA17_Chr1g0161691 46.715 137 68 2 102 234 1 136 1.58e-37 130
Msa1275400 MtrunA17_Chr3g0089361 28.659 328 212 8 3 323 6 318 4.15e-35 132
Msa1275400 MtrunA17_Chr4g0044851 30.420 286 181 8 43 323 37 309 1.54e-34 131
Msa1275400 MtrunA17_Chr1g0153371 29.352 293 193 6 35 323 27 309 6.80e-31 121
Msa1275400 MtrunA17_Chr8g0388921 29.310 290 199 4 31 316 22 309 5.17e-30 119
Msa1275400 MtrunA17_Chr5g0408181 28.041 296 184 11 27 315 19 292 3.28e-28 113
Msa1275400 MtrunA17_Chr6g0455461 27.667 300 187 10 33 323 25 303 1.55e-27 111
Msa1275400 MtrunA17_Chr8g0373441 28.188 298 194 11 35 323 25 311 4.97e-27 109
Msa1275400 MtrunA17_Chr3g0078411 27.425 299 189 10 33 323 25 303 7.32e-27 109
Msa1275400 MtrunA17_Chr7g0219961 26.073 303 187 11 33 323 25 302 3.01e-26 108
Msa1275400 MtrunA17_Chr4g0044841 27.891 294 195 7 35 323 29 310 4.32e-26 107
Msa1275400 MtrunA17_Chr8g0369791 25.926 324 211 10 1 320 1 299 4.84e-26 107
Msa1275400 MtrunA17_Chr3g0113321 28.333 300 187 11 35 323 21 303 1.95e-25 106
Msa1275400 MtrunA17_Chr5g0443401 26.582 316 217 9 13 321 8 315 6.53e-25 104
Msa1275400 MtrunA17_Chr5g0397971 25.914 301 201 9 30 321 18 305 9.58e-25 103
Msa1275400 MtrunA17_Chr8g0341951 25.455 330 217 12 1 321 1 310 2.13e-24 103
Msa1275400 MtrunA17_Chr7g0226771 26.298 289 198 8 41 323 31 310 2.16e-24 103
Msa1275400 MtrunA17_Chr6g0478161 26.573 286 190 10 43 321 50 322 6.68e-23 99.0
Msa1275400 MtrunA17_Chr5g0403931 26.855 283 187 11 43 316 36 307 9.27e-23 98.2
Msa1275400 MtrunA17_Chr5g0443731 24.028 283 208 4 38 316 24 303 2.72e-22 97.1
Msa1275400 MtrunA17_Chr1g0164371 25.267 281 191 8 37 312 38 304 2.73e-21 94.0
Msa1275400 MtrunA17_Chr8g0372411 27.586 290 184 11 44 321 40 315 4.56e-21 93.6
Msa1275400 MtrunA17_Chr3g0089291 26.337 243 167 5 84 322 1 235 4.88e-21 90.1
Msa1275400 MtrunA17_Chr3g0089351 26.033 242 171 4 84 323 1 236 1.60e-20 91.3
Msa1275400 MtrunA17_Chr3g0107511 26.978 278 191 7 43 314 33 304 8.16e-20 89.7
Msa1275400 MtrunA17_Chr8g0380471 27.622 286 198 6 35 316 28 308 1.02e-19 89.4
Msa1275400 MtrunA17_Chr8g0372711 23.381 278 197 9 45 315 48 316 1.08e-19 89.4
Msa1275400 MtrunA17_Chr3g0107501 25.795 283 186 8 43 313 33 303 2.29e-19 88.6
Msa1275400 MtrunA17_Chr3g0089381 29.286 140 95 2 184 323 2 137 1.86e-15 74.3
Msa1275400 MtrunA17_Chr5g0436991 36.111 108 62 3 216 323 55 155 2.36e-13 67.0
Msa1275400 MtrunA17_Chr3g0089371 45.238 84 44 2 34 115 31 114 6.84e-13 67.0
Msa1275400 MtrunA17_Chr8g0380931 22.222 297 184 11 43 316 62 334 1.90e-12 67.8
Msa1275400 MtrunA17_Chr4g0076161 25.000 320 203 16 29 323 23 330 5.03e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1275400 AT2G32440.2 40.328 305 176 3 23 323 24 326 1.42e-81 256
Msa1275400 AT2G32440.1 40.328 305 176 3 23 323 24 326 1.42e-81 256
Msa1275400 AT1G05160.2 39.506 324 188 5 5 323 7 327 4.19e-80 252
Msa1275400 AT1G05160.1 39.506 324 188 5 5 323 7 327 4.19e-80 252
Msa1275400 AT5G36110.2 31.786 280 179 6 43 316 34 307 1.73e-36 135
Msa1275400 AT5G36110.1 31.228 285 184 6 43 321 34 312 2.04e-35 134
Msa1275400 AT5G36140.1 30.935 278 181 6 43 316 33 303 1.52e-34 128
Msa1275400 AT3G19270.1 28.671 286 185 9 43 323 34 305 1.75e-28 114
Msa1275400 AT3G19270.2 28.671 286 185 9 43 323 34 305 2.62e-28 114
Msa1275400 AT1G73340.1 27.304 293 192 10 37 321 37 316 1.80e-26 109
Msa1275400 AT4G36380.2 27.368 285 195 8 43 321 69 347 1.02e-25 106
Msa1275400 AT4G19230.1 27.622 286 179 12 42 320 35 299 1.62e-25 106
Msa1275400 AT4G19230.2 27.622 286 179 12 42 320 35 299 1.62e-25 106
Msa1275400 AT4G36380.1 27.368 285 195 8 43 321 69 347 1.79e-25 106
Msa1275400 AT1G12740.3 28.239 301 194 10 30 321 18 305 1.03e-24 103
Msa1275400 AT2G29090.4 28.070 285 185 10 43 321 49 319 1.15e-24 102
Msa1275400 AT1G12740.1 28.239 301 194 10 30 321 18 305 3.25e-24 102
Msa1275400 AT1G12740.4 28.239 301 194 10 30 321 18 305 3.83e-24 102
Msa1275400 AT2G29090.2 28.070 285 185 10 43 321 49 319 3.96e-24 102
Msa1275400 AT2G29090.1 28.070 285 185 10 43 321 49 319 3.96e-24 102
Msa1275400 AT3G13730.2 25.784 287 199 7 40 319 48 327 7.68e-24 101
Msa1275400 AT3G13730.1 25.784 287 199 7 40 319 48 327 8.98e-24 101
Msa1275400 AT5G45340.2 26.408 284 185 11 42 320 35 299 5.26e-23 99.4
Msa1275400 AT5G45340.1 26.056 284 186 11 42 320 35 299 6.84e-23 99.0
Msa1275400 AT5G05690.2 28.814 295 176 12 43 323 31 305 9.15e-23 98.2
Msa1275400 AT5G05690.1 28.814 295 176 12 43 323 31 305 1.51e-22 98.2
Msa1275400 AT5G38970.3 22.973 296 204 8 35 323 26 304 2.50e-22 97.1
Msa1275400 AT5G38970.1 22.973 296 204 8 35 323 26 304 3.51e-22 97.1
Msa1275400 AT1G12740.2 27.687 307 194 12 30 321 18 311 3.68e-22 97.1
Msa1275400 AT3G30180.1 26.351 296 196 11 33 323 26 304 3.59e-21 94.0
Msa1275400 AT1G19630.2 23.264 288 209 9 34 315 25 306 1.82e-20 91.7
Msa1275400 AT1G19630.1 22.917 288 210 9 34 315 25 306 2.03e-20 92.0
Msa1275400 AT1G19630.3 22.917 288 210 9 34 315 25 306 2.17e-20 91.7
Msa1275400 AT1G65670.1 25.490 306 203 8 23 321 15 302 6.96e-20 90.5
Msa1275400 AT4G15300.3 25.850 294 197 8 30 316 12 291 2.03e-19 89.0
Msa1275400 AT4G15300.2 25.850 294 197 8 30 316 22 301 2.34e-19 89.0
Msa1275400 AT3G50660.2 24.688 320 194 14 37 323 33 338 3.64e-19 88.2
Msa1275400 AT3G50660.1 24.062 320 196 14 37 323 33 338 5.27e-19 87.8
Msa1275400 AT1G55940.2 21.698 318 218 11 23 323 25 328 5.13e-16 79.0
Msa1275400 AT1G55940.1 21.519 316 221 10 23 323 25 328 5.16e-16 79.0
Msa1275400 AT4G15396.4 21.843 293 215 6 32 321 24 305 8.01e-16 78.2
Msa1275400 AT4G15396.1 21.843 293 215 6 32 321 24 305 1.02e-15 78.2
Msa1275400 AT4G15396.3 21.843 293 215 6 32 321 24 305 1.21e-15 77.8
Msa1275400 AT4G15396.2 21.843 293 215 6 32 321 24 305 1.25e-15 77.8
Msa1275400 AT1G78490.2 20.588 306 230 5 23 323 15 312 1.32e-15 77.4
Msa1275400 AT1G78490.1 20.588 306 230 5 23 323 15 312 1.47e-15 77.4
Msa1275400 AT4G15300.1 23.885 314 200 9 30 316 12 313 2.96e-14 73.6
Msa1275400 AT2G42850.2 25.436 287 190 12 43 318 45 318 4.25e-14 72.8
Msa1275400 AT2G29090.3 26.293 232 157 8 96 321 1 224 9.77e-14 71.6
Msa1275400 AT2G42850.1 25.436 287 190 12 43 318 45 318 1.03e-13 72.0
Msa1275400 AT4G15393.2 20.795 327 232 8 1 323 2 305 3.27e-13 70.5
Msa1275400 AT4G15393.1 20.795 327 232 8 1 323 2 305 3.50e-13 70.1
Msa1275400 AT3G44970.2 22.654 309 220 7 23 323 15 312 5.04e-12 66.6
Msa1275400 AT3G44970.1 22.654 309 220 7 23 323 15 312 7.45e-12 66.2
Msa1275400 AT3G53280.1 23.453 307 197 11 43 321 28 324 9.71e-12 65.9
Msa1275400 AT2G45560.1 23.457 324 198 15 35 323 30 338 1.62e-11 65.5
Msa1275400 AT2G45550.1 22.468 316 203 11 39 323 34 338 4.19e-11 64.3
Msa1275400 AT3G26170.1 23.416 363 206 15 1 323 1 331 5.53e-11 63.9

Find 51 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGCTTAGTGATCGATTT+TGG 0.175863 8_3:-9321538 None:intergenic
TGTACATAACTAATGTATTT+TGG 0.219074 8_3:-9321627 None:intergenic
AGCAAAACCAGGTGCCTTTA+TGG 0.221809 8_3:-9321851 None:intergenic
AAATGGAAATACATTGGATT+TGG 0.256548 8_3:+9320944 None:intergenic
AGATGAAAAGTGTTTGAAAA+AGG 0.264720 8_3:-9321118 None:intergenic
GACATGGGATGGCCTATTAT+TGG 0.274318 8_3:+9321084 Msa1275400:CDS
AAACATTCTTCATCTCATTA+AGG 0.297114 8_3:-9321720 None:intergenic
CCGGTCATCGTCAATAAATT+TGG 0.306182 8_3:+9321784 Msa1275400:CDS
TGGAGATTCATTTAACGTTA+TGG 0.314929 8_3:+9321804 Msa1275400:CDS
AATCGATCACTAAGCTAGTA+TGG 0.334069 8_3:+9321542 Msa1275400:CDS
ATCTCATTAAGGAACTCAAC+AGG 0.376829 8_3:-9321709 None:intergenic
CTGATAGCGCTATTGCTTAG+TGG 0.378215 8_3:+9322151 Msa1275400:CDS
GCAAAACCAGGTGCCTTTAT+GGG 0.400526 8_3:-9321850 None:intergenic
ACATGGGATGGCCTATTATT+GGG 0.401969 8_3:+9321085 Msa1275400:CDS
ATGTCATTGACAAATTCATC+AGG 0.411182 8_3:-9321147 None:intergenic
GGCCACATGTTCCCAATAAT+AGG 0.413146 8_3:-9321096 None:intergenic
TCATTTAACGTTATGGCTGC+TGG 0.422801 8_3:+9321811 Msa1275400:CDS
TTTGGAAATAAACGACGAAA+AGG 0.428658 8_3:+9322093 Msa1275400:CDS
ATGTACAAGACACACTTGTA+TGG 0.428727 8_3:+9321436 Msa1275400:CDS
CCCATGTCACCAGGAGGTAG+TGG 0.466764 8_3:-9321069 None:intergenic
CCAAATTTATTGACGATGAC+CGG 0.477081 8_3:-9321784 None:intergenic
AATACCTATGTTCACCACTT+AGG 0.479455 8_3:-9321573 None:intergenic
TCCACTACCTCCTGGTGACA+TGG 0.483202 8_3:+9321068 Msa1275400:CDS
TACCTCCTGGTGACATGGGA+TGG 0.489770 8_3:+9321073 Msa1275400:CDS
TACAATCTATTGTTGATGAA+AGG 0.498853 8_3:+9322014 Msa1275400:CDS
TGCTTTCAACAAAGCACTCA+AGG 0.500116 8_3:+9321870 Msa1275400:CDS
AATTTAGGCACGTAAGAAGT+TGG 0.501299 8_3:+9321982 Msa1275400:intron
GACAGATGATGTGAACTTTG+AGG 0.520859 8_3:+9321507 Msa1275400:CDS
TTGGAAATAAACGACGAAAA+GGG 0.523297 8_3:+9322094 Msa1275400:CDS
GCAGAAGTGACTATGATGCT+TGG 0.539245 8_3:-9321463 None:intergenic
TTGGCTTTCTTCAAACAAAG+TGG 0.553244 8_3:-9322229 None:intergenic
CAAGTGTGTCTTGTACATAA+CGG 0.560883 8_3:-9321431 None:intergenic
ATAGGCCATCCCATGTCACC+AGG 0.570615 8_3:-9321078 None:intergenic
TTTATGCCCATAAAGGCACC+TGG 0.571604 8_3:+9321844 Msa1275400:CDS
TTCTGCTGCTATGTGCAAGA+AGG 0.579434 8_3:+9321480 Msa1275400:CDS
GATACCTAAGTGGTGAACAT+AGG 0.581047 8_3:+9321569 Msa1275400:CDS
CCACTACCTCCTGGTGACAT+GGG 0.587904 8_3:+9321069 Msa1275400:CDS
GGCCTATTATTGGGAACATG+TGG 0.591942 8_3:+9321094 Msa1275400:CDS
TTGTGAGGAATTTGAATGTG+TGG 0.606895 8_3:+9321013 Msa1275400:CDS
CTAGTCACTTCTCCTATCGT+TGG 0.613545 8_3:+9321604 Msa1275400:CDS
GATGATGTGAACTTTGAGGA+AGG 0.613821 8_3:+9321511 Msa1275400:CDS
AAAGGACATCCACTACCTCC+TGG 0.616462 8_3:+9321060 Msa1275400:CDS
GCTTTGTTGAAAGCAAAACC+AGG 0.621354 8_3:-9321862 None:intergenic
ATTGTAGCATCCTAGCAAAG+TGG 0.639328 8_3:-9320977 None:intergenic
CATTAGCAACTGCTATGATG+TGG 0.640407 8_3:+9322182 Msa1275400:CDS
TCTCATTAAGGAACTCAACA+GGG 0.659553 8_3:-9321708 None:intergenic
TGTCATTGACAAATTCATCA+GGG 0.660537 8_3:-9321146 None:intergenic
ACTTTGTTTGAAGAAAGCCA+AGG 0.670445 8_3:+9322231 Msa1275400:CDS
TATGTACATACAACGCATTG+AGG 0.680590 8_3:+9321642 Msa1275400:CDS
GTATGGACTAGATACCTAAG+TGG 0.682431 8_3:+9321559 Msa1275400:CDS
GGCCATCCCATGTCACCAGG+AGG 0.688276 8_3:-9321075 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAGGAAAAAAGTA+GGG - chr8_3:9321198-9321217 None:intergenic 20.0%
!! AAAAGAAAAAGGAAAAAAGT+AGG - chr8_3:9321199-9321218 None:intergenic 20.0%
!! AGGATTAAAGAAAAAGAAAA+AGG - chr8_3:9321210-9321229 None:intergenic 20.0%
!!! AATCCTTTTTCTATAATAGT+TGG + chr8_3:9321224-9321243 Msa1275400:intron 20.0%
!!! TGTACATAACTAATGTATTT+TGG - chr8_3:9321630-9321649 None:intergenic 20.0%
!!! AATGTGAAAGATGATTTTAA+AGG - chr8_3:9321746-9321765 None:intergenic 20.0%
!!! AATCATCTTTCACATTTTTT+TGG + chr8_3:9321750-9321769 Msa1275400:CDS 20.0%
!!! ATCATCTTTCACATTTTTTT+GGG + chr8_3:9321751-9321770 Msa1275400:CDS 20.0%
!! AAGAAGAATGAGAAAATAAA+AGG - chr8_3:9321918-9321937 None:intergenic 20.0%
!!! AGATCTTTTAGATATTCTTT+TGG + chr8_3:9322075-9322094 Msa1275400:CDS 20.0%
!! AAAGAAAAAGGAAAAAAGTA+GGG - chr8_3:9321198-9321217 None:intergenic 20.0%
!! AAAAGAAAAAGGAAAAAAGT+AGG - chr8_3:9321199-9321218 None:intergenic 20.0%
!! AGGATTAAAGAAAAAGAAAA+AGG - chr8_3:9321210-9321229 None:intergenic 20.0%
!!! AATCCTTTTTCTATAATAGT+TGG + chr8_3:9321224-9321243 Msa1275400:intron 20.0%
!!! TGTACATAACTAATGTATTT+TGG - chr8_3:9321630-9321649 None:intergenic 20.0%
!!! AATGTGAAAGATGATTTTAA+AGG - chr8_3:9321746-9321765 None:intergenic 20.0%
!!! AATCATCTTTCACATTTTTT+TGG + chr8_3:9321750-9321769 Msa1275400:CDS 20.0%
!!! ATCATCTTTCACATTTTTTT+GGG + chr8_3:9321751-9321770 Msa1275400:CDS 20.0%
!! AAGAAGAATGAGAAAATAAA+AGG - chr8_3:9321918-9321937 None:intergenic 20.0%
!!! AGATCTTTTAGATATTCTTT+TGG + chr8_3:9322075-9322094 Msa1275400:CDS 20.0%
!! GATTTTAAACTGAGAAAGAA+AGG + chr8_3:9321042-9321061 Msa1275400:CDS 25.0%
!!! GATGAAAAGTGTTTGAAAAA+GGG - chr8_3:9321120-9321139 None:intergenic 25.0%
!!! AGATGAAAAGTGTTTGAAAA+AGG - chr8_3:9321121-9321140 None:intergenic 25.0%
! AGACCAACTATTATAGAAAA+AGG - chr8_3:9321230-9321249 None:intergenic 25.0%
! CATCAACAACAAGTTAATAT+TGG - chr8_3:9321394-9321413 None:intergenic 25.0%
! AAACATTCTTCATCTCATTA+AGG - chr8_3:9321723-9321742 None:intergenic 25.0%
! TCACTTTGTATACCTAATTT+AGG + chr8_3:9321967-9321986 Msa1275400:intron 25.0%
!! TACAATCTATTGTTGATGAA+AGG + chr8_3:9322014-9322033 Msa1275400:CDS 25.0%
!! GATTTTAAACTGAGAAAGAA+AGG + chr8_3:9321042-9321061 Msa1275400:CDS 25.0%
!!! GATGAAAAGTGTTTGAAAAA+GGG - chr8_3:9321120-9321139 None:intergenic 25.0%
!!! AGATGAAAAGTGTTTGAAAA+AGG - chr8_3:9321121-9321140 None:intergenic 25.0%
! AGACCAACTATTATAGAAAA+AGG - chr8_3:9321230-9321249 None:intergenic 25.0%
! CATCAACAACAAGTTAATAT+TGG - chr8_3:9321394-9321413 None:intergenic 25.0%
! AAACATTCTTCATCTCATTA+AGG - chr8_3:9321723-9321742 None:intergenic 25.0%
! TCACTTTGTATACCTAATTT+AGG + chr8_3:9321967-9321986 Msa1275400:intron 25.0%
!! TACAATCTATTGTTGATGAA+AGG + chr8_3:9322014-9322033 Msa1275400:CDS 25.0%
! ATTTTGCTGACAAAATTGTG+AGG + chr8_3:9320998-9321017 Msa1275400:CDS 30.0%
TGTCATTGACAAATTCATCA+GGG - chr8_3:9321149-9321168 None:intergenic 30.0%
ATGTCATTGACAAATTCATC+AGG - chr8_3:9321150-9321169 None:intergenic 30.0%
ACGAAGAAAGTAAATAGCAA+AGG - chr8_3:9321257-9321276 None:intergenic 30.0%
TGTTGTTGATGTTTCAGATA+TGG + chr8_3:9321403-9321422 Msa1275400:intron 30.0%
TGGAGATTCATTTAACGTTA+TGG + chr8_3:9321804-9321823 Msa1275400:CDS 30.0%
! ATTCTCTTTTATGCCCATAA+AGG + chr8_3:9321837-9321856 Msa1275400:CDS 30.0%
TTTGGAAATAAACGACGAAA+AGG + chr8_3:9322093-9322112 Msa1275400:CDS 30.0%
TTGGAAATAAACGACGAAAA+GGG + chr8_3:9322094-9322113 Msa1275400:CDS 30.0%
! ATTTTGCTGACAAAATTGTG+AGG + chr8_3:9320998-9321017 Msa1275400:CDS 30.0%
TGTCATTGACAAATTCATCA+GGG - chr8_3:9321149-9321168 None:intergenic 30.0%
ATGTCATTGACAAATTCATC+AGG - chr8_3:9321150-9321169 None:intergenic 30.0%
ACGAAGAAAGTAAATAGCAA+AGG - chr8_3:9321257-9321276 None:intergenic 30.0%
TGTTGTTGATGTTTCAGATA+TGG + chr8_3:9321403-9321422 Msa1275400:intron 30.0%
TGGAGATTCATTTAACGTTA+TGG + chr8_3:9321804-9321823 Msa1275400:CDS 30.0%
! ATTCTCTTTTATGCCCATAA+AGG + chr8_3:9321837-9321856 Msa1275400:CDS 30.0%
TTTGGAAATAAACGACGAAA+AGG + chr8_3:9322093-9322112 Msa1275400:CDS 30.0%
TTGGAAATAAACGACGAAAA+GGG + chr8_3:9322094-9322113 Msa1275400:CDS 30.0%
!!! ATTTTTGTTGCCACTTTGCT+AGG + chr8_3:9320967-9320986 Msa1275400:CDS 35.0%
TTGTGAGGAATTTGAATGTG+TGG + chr8_3:9321013-9321032 Msa1275400:CDS 35.0%
CAAGTGTGTCTTGTACATAA+CGG - chr8_3:9321434-9321453 None:intergenic 35.0%
ATGTACAAGACACACTTGTA+TGG + chr8_3:9321436-9321455 Msa1275400:CDS 35.0%
!! ACTAGCTTAGTGATCGATTT+TGG - chr8_3:9321541-9321560 None:intergenic 35.0%
AATCGATCACTAAGCTAGTA+TGG + chr8_3:9321542-9321561 Msa1275400:CDS 35.0%
AATACCTATGTTCACCACTT+AGG - chr8_3:9321576-9321595 None:intergenic 35.0%
!!! AATGTATTTTGGCCAACGAT+AGG - chr8_3:9321619-9321638 None:intergenic 35.0%
TATGTACATACAACGCATTG+AGG + chr8_3:9321642-9321661 Msa1275400:CDS 35.0%
TCTCATTAAGGAACTCAACA+GGG - chr8_3:9321711-9321730 None:intergenic 35.0%
ATCTCATTAAGGAACTCAAC+AGG - chr8_3:9321712-9321731 None:intergenic 35.0%
CCAAATTTATTGACGATGAC+CGG - chr8_3:9321787-9321806 None:intergenic 35.0%
ACTTCTTACGTGCCTAAATT+AGG - chr8_3:9321982-9322001 None:intergenic 35.0%
AATTTAGGCACGTAAGAAGT+TGG + chr8_3:9321982-9322001 Msa1275400:intron 35.0%
CGAAAAGGGTGAAAAATTAG+AGG + chr8_3:9322108-9322127 Msa1275400:CDS 35.0%
! TTGGCTTTCTTCAAACAAAG+TGG - chr8_3:9322232-9322251 None:intergenic 35.0%
!!! ATTTTTGTTGCCACTTTGCT+AGG + chr8_3:9320967-9320986 Msa1275400:CDS 35.0%
TTGTGAGGAATTTGAATGTG+TGG + chr8_3:9321013-9321032 Msa1275400:CDS 35.0%
CAAGTGTGTCTTGTACATAA+CGG - chr8_3:9321434-9321453 None:intergenic 35.0%
ATGTACAAGACACACTTGTA+TGG + chr8_3:9321436-9321455 Msa1275400:CDS 35.0%
!! ACTAGCTTAGTGATCGATTT+TGG - chr8_3:9321541-9321560 None:intergenic 35.0%
AATCGATCACTAAGCTAGTA+TGG + chr8_3:9321542-9321561 Msa1275400:CDS 35.0%
AATACCTATGTTCACCACTT+AGG - chr8_3:9321576-9321595 None:intergenic 35.0%
!!! AATGTATTTTGGCCAACGAT+AGG - chr8_3:9321619-9321638 None:intergenic 35.0%
TATGTACATACAACGCATTG+AGG + chr8_3:9321642-9321661 Msa1275400:CDS 35.0%
TCTCATTAAGGAACTCAACA+GGG - chr8_3:9321711-9321730 None:intergenic 35.0%
ATCTCATTAAGGAACTCAAC+AGG - chr8_3:9321712-9321731 None:intergenic 35.0%
CCAAATTTATTGACGATGAC+CGG - chr8_3:9321787-9321806 None:intergenic 35.0%
ACTTCTTACGTGCCTAAATT+AGG - chr8_3:9321982-9322001 None:intergenic 35.0%
AATTTAGGCACGTAAGAAGT+TGG + chr8_3:9321982-9322001 Msa1275400:intron 35.0%
CGAAAAGGGTGAAAAATTAG+AGG + chr8_3:9322108-9322127 Msa1275400:CDS 35.0%
! TTGGCTTTCTTCAAACAAAG+TGG - chr8_3:9322232-9322251 None:intergenic 35.0%
ATTGTAGCATCCTAGCAAAG+TGG - chr8_3:9320980-9320999 None:intergenic 40.0%
ACATGGGATGGCCTATTATT+GGG + chr8_3:9321085-9321104 Msa1275400:CDS 40.0%
GACAGATGATGTGAACTTTG+AGG + chr8_3:9321507-9321526 Msa1275400:CDS 40.0%
! GATGATGTGAACTTTGAGGA+AGG + chr8_3:9321511-9321530 Msa1275400:CDS 40.0%
!! GTATGGACTAGATACCTAAG+TGG + chr8_3:9321559-9321578 Msa1275400:CDS 40.0%
GATACCTAAGTGGTGAACAT+AGG + chr8_3:9321569-9321588 Msa1275400:CDS 40.0%
!!! TTTTTTGGGATCTTGCGATC+CGG + chr8_3:9321765-9321784 Msa1275400:CDS 40.0%
CCGGTCATCGTCAATAAATT+TGG + chr8_3:9321784-9321803 Msa1275400:CDS 40.0%
TCATTTAACGTTATGGCTGC+TGG + chr8_3:9321811-9321830 Msa1275400:CDS 40.0%
! GCTTTGTTGAAAGCAAAACC+AGG - chr8_3:9321865-9321884 None:intergenic 40.0%
! TGCTTTCAACAAAGCACTCA+AGG + chr8_3:9321870-9321889 Msa1275400:CDS 40.0%
! TTCAACAAAGCACTCAAGGT+TGG + chr8_3:9321874-9321893 Msa1275400:intron 40.0%
!! AGGAAAGCGCTGCTAAAAAA+TGG + chr8_3:9322034-9322053 Msa1275400:CDS 40.0%
!! GGAAAGCGCTGCTAAAAAAT+GGG + chr8_3:9322035-9322054 Msa1275400:CDS 40.0%
CATTAGCAACTGCTATGATG+TGG + chr8_3:9322182-9322201 Msa1275400:CDS 40.0%
ATTGTAGCATCCTAGCAAAG+TGG - chr8_3:9320980-9320999 None:intergenic 40.0%
ACATGGGATGGCCTATTATT+GGG + chr8_3:9321085-9321104 Msa1275400:CDS 40.0%
GACAGATGATGTGAACTTTG+AGG + chr8_3:9321507-9321526 Msa1275400:CDS 40.0%
! GATGATGTGAACTTTGAGGA+AGG + chr8_3:9321511-9321530 Msa1275400:CDS 40.0%
!! GTATGGACTAGATACCTAAG+TGG + chr8_3:9321559-9321578 Msa1275400:CDS 40.0%
GATACCTAAGTGGTGAACAT+AGG + chr8_3:9321569-9321588 Msa1275400:CDS 40.0%
!!! TTTTTTGGGATCTTGCGATC+CGG + chr8_3:9321765-9321784 Msa1275400:CDS 40.0%
CCGGTCATCGTCAATAAATT+TGG + chr8_3:9321784-9321803 Msa1275400:CDS 40.0%
TCATTTAACGTTATGGCTGC+TGG + chr8_3:9321811-9321830 Msa1275400:CDS 40.0%
! GCTTTGTTGAAAGCAAAACC+AGG - chr8_3:9321865-9321884 None:intergenic 40.0%
! TGCTTTCAACAAAGCACTCA+AGG + chr8_3:9321870-9321889 Msa1275400:CDS 40.0%
! TTCAACAAAGCACTCAAGGT+TGG + chr8_3:9321874-9321893 Msa1275400:intron 40.0%
!! AGGAAAGCGCTGCTAAAAAA+TGG + chr8_3:9322034-9322053 Msa1275400:CDS 40.0%
!! GGAAAGCGCTGCTAAAAAAT+GGG + chr8_3:9322035-9322054 Msa1275400:CDS 40.0%
CATTAGCAACTGCTATGATG+TGG + chr8_3:9322182-9322201 Msa1275400:CDS 40.0%
GACATGGGATGGCCTATTAT+TGG + chr8_3:9321084-9321103 Msa1275400:CDS 45.0%
GGCCTATTATTGGGAACATG+TGG + chr8_3:9321094-9321113 Msa1275400:CDS 45.0%
GGCCACATGTTCCCAATAAT+AGG - chr8_3:9321099-9321118 None:intergenic 45.0%
GCAGAAGTGACTATGATGCT+TGG - chr8_3:9321466-9321485 None:intergenic 45.0%
TTCTGCTGCTATGTGCAAGA+AGG + chr8_3:9321480-9321499 Msa1275400:CDS 45.0%
CTAGTCACTTCTCCTATCGT+TGG + chr8_3:9321604-9321623 Msa1275400:CDS 45.0%
!! TTTATGCCCATAAAGGCACC+TGG + chr8_3:9321844-9321863 Msa1275400:CDS 45.0%
GCAAAACCAGGTGCCTTTAT+GGG - chr8_3:9321853-9321872 None:intergenic 45.0%
AGCAAAACCAGGTGCCTTTA+TGG - chr8_3:9321854-9321873 None:intergenic 45.0%
! CTGATAGCGCTATTGCTTAG+TGG + chr8_3:9322151-9322170 Msa1275400:CDS 45.0%
GACATGGGATGGCCTATTAT+TGG + chr8_3:9321084-9321103 Msa1275400:CDS 45.0%
GGCCTATTATTGGGAACATG+TGG + chr8_3:9321094-9321113 Msa1275400:CDS 45.0%
GGCCACATGTTCCCAATAAT+AGG - chr8_3:9321099-9321118 None:intergenic 45.0%
GCAGAAGTGACTATGATGCT+TGG - chr8_3:9321466-9321485 None:intergenic 45.0%
TTCTGCTGCTATGTGCAAGA+AGG + chr8_3:9321480-9321499 Msa1275400:CDS 45.0%
CTAGTCACTTCTCCTATCGT+TGG + chr8_3:9321604-9321623 Msa1275400:CDS 45.0%
!! TTTATGCCCATAAAGGCACC+TGG + chr8_3:9321844-9321863 Msa1275400:CDS 45.0%
GCAAAACCAGGTGCCTTTAT+GGG - chr8_3:9321853-9321872 None:intergenic 45.0%
AGCAAAACCAGGTGCCTTTA+TGG - chr8_3:9321854-9321873 None:intergenic 45.0%
! CTGATAGCGCTATTGCTTAG+TGG + chr8_3:9322151-9322170 Msa1275400:CDS 45.0%
AAAGGACATCCACTACCTCC+TGG + chr8_3:9321060-9321079 Msa1275400:CDS 50.0%
AAAGGACATCCACTACCTCC+TGG + chr8_3:9321060-9321079 Msa1275400:CDS 50.0%
TCCACTACCTCCTGGTGACA+TGG + chr8_3:9321068-9321087 Msa1275400:CDS 55.0%
CCACTACCTCCTGGTGACAT+GGG + chr8_3:9321069-9321088 Msa1275400:CDS 55.0%
TACCTCCTGGTGACATGGGA+TGG + chr8_3:9321073-9321092 Msa1275400:CDS 55.0%
ATAGGCCATCCCATGTCACC+AGG - chr8_3:9321081-9321100 None:intergenic 55.0%
TCCACTACCTCCTGGTGACA+TGG + chr8_3:9321068-9321087 Msa1275400:CDS 55.0%
CCACTACCTCCTGGTGACAT+GGG + chr8_3:9321069-9321088 Msa1275400:CDS 55.0%
TACCTCCTGGTGACATGGGA+TGG + chr8_3:9321073-9321092 Msa1275400:CDS 55.0%
ATAGGCCATCCCATGTCACC+AGG - chr8_3:9321081-9321100 None:intergenic 55.0%
CCCATGTCACCAGGAGGTAG+TGG - chr8_3:9321072-9321091 None:intergenic 60.0%
CCCATGTCACCAGGAGGTAG+TGG - chr8_3:9321072-9321091 None:intergenic 60.0%
GGCCATCCCATGTCACCAGG+AGG - chr8_3:9321078-9321097 None:intergenic 65.0%
GGCCATCCCATGTCACCAGG+AGG - chr8_3:9321078-9321097 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 9320946 9322252 9320946 ID=Msa1275400;Name=Msa1275400
chr8_3 mRNA 9320946 9322252 9320946 ID=Msa1275400-mRNA-1;Parent=Msa1275400;Name=Msa1275400-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.33|1|1|1|3|0|323
chr8_3 exon 9320946 9321178 9320946 ID=Msa1275400-mRNA-1:exon:3922;Parent=Msa1275400-mRNA-1
chr8_3 exon 9321420 9321891 9321420 ID=Msa1275400-mRNA-1:exon:3923;Parent=Msa1275400-mRNA-1
chr8_3 exon 9321989 9322252 9321989 ID=Msa1275400-mRNA-1:exon:3924;Parent=Msa1275400-mRNA-1
chr8_3 CDS 9320946 9321178 9320946 ID=Msa1275400-mRNA-1:cds;Parent=Msa1275400-mRNA-1
chr8_3 CDS 9321420 9321891 9321420 ID=Msa1275400-mRNA-1:cds;Parent=Msa1275400-mRNA-1
chr8_3 CDS 9321989 9322252 9321989 ID=Msa1275400-mRNA-1:cds;Parent=Msa1275400-mRNA-1
Gene Sequence

>Msa1275400

ATGGAAATACATTGGATTTGGATTTTTGTTGCCACTTTGCTAGGATGCTACAATTTTGCTGACAAAATTGTGAGGAATTTGAATGTGTGGTATTATGATTTTAAACTGAGAAAGAAAGGACATCCACTACCTCCTGGTGACATGGGATGGCCTATTATTGGGAACATGTGGCCCTTTTTCAAACACTTTTCATCTAGTCACCCTGATGAATTTGTCAATGACATTGTTCTTAAATATGGACAAACCGTTATGTACAAGACACACTTGTATGGATTTCCAAGCATCATAGTCACTTCTGCTGCTATGTGCAAGAAGGTTATGACAGATGATGTGAACTTTGAGGAAGGTTATCCAAAATCGATCACTAAGCTAGTATGGACTAGATACCTAAGTGGTGAACATAGGTATTTTAAACGACTAGTCACTTCTCCTATCGTTGGCCAAAATACATTAGTTATGTACATACAACGCATTGAGGATATTATAATCGATAAGCTCGAAGAATTGTCTAGCATGAAACACCCTGTTGAGTTCCTTAATGAGATGAAGAATGTTTCCTTTAAAATCATCTTTCACATTTTTTTGGGATCTTGCGATCCGGTCATCGTCAATAAATTTGGAGATTCATTTAACGTTATGGCTGCTGGTATATTCTCTTTTATGCCCATAAAGGCACCTGGTTTTGCTTTCAACAAAGCACTCAAGGCACGTAAGAAGTTGGTCAAAATATTACAATCTATTGTTGATGAAAGGAAAGCGCTGCTAAAAAATGGGCAAATCGAAGAAAAGAAAGATCTTTTAGATATTCTTTTGGAAATAAACGACGAAAAGGGTGAAAAATTAGAGGTTGATGACATTATTGACTTTCTGATAGCGCTATTGCTTAGTGGTCATGAAACATTAGCAACTGCTATGATGTGGTTAATTACATATCTTACAGAACATCCACTTTGTTTGAAGAAAGCCAAG

Protein sequence

>Msa1275400

MEIHWIWIFVATLLGCYNFADKIVRNLNVWYYDFKLRKKGHPLPPGDMGWPIIGNMWPFFKHFSSSHPDEFVNDIVLKYGQTVMYKTHLYGFPSIIVTSAAMCKKVMTDDVNFEEGYPKSITKLVWTRYLSGEHRYFKRLVTSPIVGQNTLVMYIQRIEDIIIDKLEELSSMKHPVEFLNEMKNVSFKIIFHIFLGSCDPVIVNKFGDSFNVMAAGIFSFMPIKAPGFAFNKALKARKKLVKILQSIVDERKALLKNGQIEEKKDLLDILLEINDEKGEKLEVDDIIDFLIALLLSGHETLATAMMWLITYLTEHPLCLKKAK