Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1275400 | BAG68925.1 | 63.077 | 325 | 118 | 1 | 1 | 323 | 1 | 325 | 1.04e-147 | 434 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1275400 | sp|B5BSX1|BAMO_GLYUR | 59.878 | 329 | 125 | 3 | 1 | 323 | 1 | 328 | 8.44e-143 | 415 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1275400 | B5BSW7 | 63.077 | 325 | 118 | 1 | 1 | 323 | 1 | 325 | 4.97e-148 | 434 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1233060 | Msa1275400 | 0.831839 | 1.329181e-55 | -8.615850e-47 |
Msa1275400 | Msa1275410 | 0.820574 | 6.383454e-53 | -8.615850e-47 |
Msa1275400 | Msa1313600 | 0.883686 | 3.637017e-71 | -8.615850e-47 |
Msa1200090 | Msa1275400 | 0.828990 | 6.611368e-55 | -8.615850e-47 |
Msa0512870 | Msa1275400 | 0.802179 | 6.343104e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1275400 | MtrunA17_Chr8g0339861 | 62.462 | 325 | 120 | 1 | 1 | 323 | 1 | 325 | 5.07e-150 | 430 |
Msa1275400 | MtrunA17_Chr4g0000171 | 60.681 | 323 | 127 | 0 | 1 | 323 | 1 | 323 | 6.99e-150 | 424 |
Msa1275400 | MtrunA17_Chr4g0013471 | 59.443 | 323 | 131 | 0 | 1 | 323 | 1 | 323 | 8.61e-146 | 416 |
Msa1275400 | MtrunA17_Chr4g0000161 | 59.443 | 323 | 131 | 0 | 1 | 323 | 1 | 323 | 6.24e-145 | 412 |
Msa1275400 | MtrunA17_Chr8g0381551 | 55.183 | 328 | 141 | 3 | 1 | 323 | 1 | 327 | 7.37e-134 | 384 |
Msa1275400 | MtrunA17_Chr8g0381571 | 55.183 | 328 | 141 | 3 | 1 | 323 | 1 | 327 | 1.17e-131 | 383 |
Msa1275400 | MtrunA17_Chr8g0381541 | 55.183 | 328 | 141 | 3 | 1 | 323 | 1 | 327 | 1.27e-131 | 384 |
Msa1275400 | MtrunA17_Chr1g0161671 | 53.049 | 328 | 133 | 6 | 1 | 323 | 1 | 312 | 4.00e-109 | 320 |
Msa1275400 | MtrunA17_Chr5g0400421 | 46.462 | 325 | 165 | 6 | 4 | 323 | 8 | 328 | 4.81e-85 | 264 |
Msa1275400 | MtrunA17_Chr2g0293421 | 40.367 | 327 | 189 | 3 | 1 | 323 | 3 | 327 | 7.96e-84 | 261 |
Msa1275400 | MtrunA17_Chr1g0161651 | 45.342 | 322 | 129 | 6 | 1 | 278 | 1 | 319 | 1.10e-83 | 256 |
Msa1275400 | MtrunA17_Chr2g0293411 | 40.123 | 324 | 186 | 4 | 6 | 323 | 4 | 325 | 1.35e-81 | 255 |
Msa1275400 | MtrunA17_Chr5g0400411 | 42.073 | 328 | 174 | 8 | 4 | 323 | 8 | 327 | 7.73e-69 | 222 |
Msa1275400 | MtrunA17_Chr1g0161691 | 46.715 | 137 | 68 | 2 | 102 | 234 | 1 | 136 | 1.58e-37 | 130 |
Msa1275400 | MtrunA17_Chr3g0089361 | 28.659 | 328 | 212 | 8 | 3 | 323 | 6 | 318 | 4.15e-35 | 132 |
Msa1275400 | MtrunA17_Chr4g0044851 | 30.420 | 286 | 181 | 8 | 43 | 323 | 37 | 309 | 1.54e-34 | 131 |
Msa1275400 | MtrunA17_Chr1g0153371 | 29.352 | 293 | 193 | 6 | 35 | 323 | 27 | 309 | 6.80e-31 | 121 |
Msa1275400 | MtrunA17_Chr8g0388921 | 29.310 | 290 | 199 | 4 | 31 | 316 | 22 | 309 | 5.17e-30 | 119 |
Msa1275400 | MtrunA17_Chr5g0408181 | 28.041 | 296 | 184 | 11 | 27 | 315 | 19 | 292 | 3.28e-28 | 113 |
Msa1275400 | MtrunA17_Chr6g0455461 | 27.667 | 300 | 187 | 10 | 33 | 323 | 25 | 303 | 1.55e-27 | 111 |
Msa1275400 | MtrunA17_Chr8g0373441 | 28.188 | 298 | 194 | 11 | 35 | 323 | 25 | 311 | 4.97e-27 | 109 |
Msa1275400 | MtrunA17_Chr3g0078411 | 27.425 | 299 | 189 | 10 | 33 | 323 | 25 | 303 | 7.32e-27 | 109 |
Msa1275400 | MtrunA17_Chr7g0219961 | 26.073 | 303 | 187 | 11 | 33 | 323 | 25 | 302 | 3.01e-26 | 108 |
Msa1275400 | MtrunA17_Chr4g0044841 | 27.891 | 294 | 195 | 7 | 35 | 323 | 29 | 310 | 4.32e-26 | 107 |
Msa1275400 | MtrunA17_Chr8g0369791 | 25.926 | 324 | 211 | 10 | 1 | 320 | 1 | 299 | 4.84e-26 | 107 |
Msa1275400 | MtrunA17_Chr3g0113321 | 28.333 | 300 | 187 | 11 | 35 | 323 | 21 | 303 | 1.95e-25 | 106 |
Msa1275400 | MtrunA17_Chr5g0443401 | 26.582 | 316 | 217 | 9 | 13 | 321 | 8 | 315 | 6.53e-25 | 104 |
Msa1275400 | MtrunA17_Chr5g0397971 | 25.914 | 301 | 201 | 9 | 30 | 321 | 18 | 305 | 9.58e-25 | 103 |
Msa1275400 | MtrunA17_Chr8g0341951 | 25.455 | 330 | 217 | 12 | 1 | 321 | 1 | 310 | 2.13e-24 | 103 |
Msa1275400 | MtrunA17_Chr7g0226771 | 26.298 | 289 | 198 | 8 | 41 | 323 | 31 | 310 | 2.16e-24 | 103 |
Msa1275400 | MtrunA17_Chr6g0478161 | 26.573 | 286 | 190 | 10 | 43 | 321 | 50 | 322 | 6.68e-23 | 99.0 |
Msa1275400 | MtrunA17_Chr5g0403931 | 26.855 | 283 | 187 | 11 | 43 | 316 | 36 | 307 | 9.27e-23 | 98.2 |
Msa1275400 | MtrunA17_Chr5g0443731 | 24.028 | 283 | 208 | 4 | 38 | 316 | 24 | 303 | 2.72e-22 | 97.1 |
Msa1275400 | MtrunA17_Chr1g0164371 | 25.267 | 281 | 191 | 8 | 37 | 312 | 38 | 304 | 2.73e-21 | 94.0 |
Msa1275400 | MtrunA17_Chr8g0372411 | 27.586 | 290 | 184 | 11 | 44 | 321 | 40 | 315 | 4.56e-21 | 93.6 |
Msa1275400 | MtrunA17_Chr3g0089291 | 26.337 | 243 | 167 | 5 | 84 | 322 | 1 | 235 | 4.88e-21 | 90.1 |
Msa1275400 | MtrunA17_Chr3g0089351 | 26.033 | 242 | 171 | 4 | 84 | 323 | 1 | 236 | 1.60e-20 | 91.3 |
Msa1275400 | MtrunA17_Chr3g0107511 | 26.978 | 278 | 191 | 7 | 43 | 314 | 33 | 304 | 8.16e-20 | 89.7 |
Msa1275400 | MtrunA17_Chr8g0380471 | 27.622 | 286 | 198 | 6 | 35 | 316 | 28 | 308 | 1.02e-19 | 89.4 |
Msa1275400 | MtrunA17_Chr8g0372711 | 23.381 | 278 | 197 | 9 | 45 | 315 | 48 | 316 | 1.08e-19 | 89.4 |
Msa1275400 | MtrunA17_Chr3g0107501 | 25.795 | 283 | 186 | 8 | 43 | 313 | 33 | 303 | 2.29e-19 | 88.6 |
Msa1275400 | MtrunA17_Chr3g0089381 | 29.286 | 140 | 95 | 2 | 184 | 323 | 2 | 137 | 1.86e-15 | 74.3 |
Msa1275400 | MtrunA17_Chr5g0436991 | 36.111 | 108 | 62 | 3 | 216 | 323 | 55 | 155 | 2.36e-13 | 67.0 |
Msa1275400 | MtrunA17_Chr3g0089371 | 45.238 | 84 | 44 | 2 | 34 | 115 | 31 | 114 | 6.84e-13 | 67.0 |
Msa1275400 | MtrunA17_Chr8g0380931 | 22.222 | 297 | 184 | 11 | 43 | 316 | 62 | 334 | 1.90e-12 | 67.8 |
Msa1275400 | MtrunA17_Chr4g0076161 | 25.000 | 320 | 203 | 16 | 29 | 323 | 23 | 330 | 5.03e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1275400 | AT2G32440.2 | 40.328 | 305 | 176 | 3 | 23 | 323 | 24 | 326 | 1.42e-81 | 256 |
Msa1275400 | AT2G32440.1 | 40.328 | 305 | 176 | 3 | 23 | 323 | 24 | 326 | 1.42e-81 | 256 |
Msa1275400 | AT1G05160.2 | 39.506 | 324 | 188 | 5 | 5 | 323 | 7 | 327 | 4.19e-80 | 252 |
Msa1275400 | AT1G05160.1 | 39.506 | 324 | 188 | 5 | 5 | 323 | 7 | 327 | 4.19e-80 | 252 |
Msa1275400 | AT5G36110.2 | 31.786 | 280 | 179 | 6 | 43 | 316 | 34 | 307 | 1.73e-36 | 135 |
Msa1275400 | AT5G36110.1 | 31.228 | 285 | 184 | 6 | 43 | 321 | 34 | 312 | 2.04e-35 | 134 |
Msa1275400 | AT5G36140.1 | 30.935 | 278 | 181 | 6 | 43 | 316 | 33 | 303 | 1.52e-34 | 128 |
Msa1275400 | AT3G19270.1 | 28.671 | 286 | 185 | 9 | 43 | 323 | 34 | 305 | 1.75e-28 | 114 |
Msa1275400 | AT3G19270.2 | 28.671 | 286 | 185 | 9 | 43 | 323 | 34 | 305 | 2.62e-28 | 114 |
Msa1275400 | AT1G73340.1 | 27.304 | 293 | 192 | 10 | 37 | 321 | 37 | 316 | 1.80e-26 | 109 |
Msa1275400 | AT4G36380.2 | 27.368 | 285 | 195 | 8 | 43 | 321 | 69 | 347 | 1.02e-25 | 106 |
Msa1275400 | AT4G19230.1 | 27.622 | 286 | 179 | 12 | 42 | 320 | 35 | 299 | 1.62e-25 | 106 |
Msa1275400 | AT4G19230.2 | 27.622 | 286 | 179 | 12 | 42 | 320 | 35 | 299 | 1.62e-25 | 106 |
Msa1275400 | AT4G36380.1 | 27.368 | 285 | 195 | 8 | 43 | 321 | 69 | 347 | 1.79e-25 | 106 |
Msa1275400 | AT1G12740.3 | 28.239 | 301 | 194 | 10 | 30 | 321 | 18 | 305 | 1.03e-24 | 103 |
Msa1275400 | AT2G29090.4 | 28.070 | 285 | 185 | 10 | 43 | 321 | 49 | 319 | 1.15e-24 | 102 |
Msa1275400 | AT1G12740.1 | 28.239 | 301 | 194 | 10 | 30 | 321 | 18 | 305 | 3.25e-24 | 102 |
Msa1275400 | AT1G12740.4 | 28.239 | 301 | 194 | 10 | 30 | 321 | 18 | 305 | 3.83e-24 | 102 |
Msa1275400 | AT2G29090.2 | 28.070 | 285 | 185 | 10 | 43 | 321 | 49 | 319 | 3.96e-24 | 102 |
Msa1275400 | AT2G29090.1 | 28.070 | 285 | 185 | 10 | 43 | 321 | 49 | 319 | 3.96e-24 | 102 |
Msa1275400 | AT3G13730.2 | 25.784 | 287 | 199 | 7 | 40 | 319 | 48 | 327 | 7.68e-24 | 101 |
Msa1275400 | AT3G13730.1 | 25.784 | 287 | 199 | 7 | 40 | 319 | 48 | 327 | 8.98e-24 | 101 |
Msa1275400 | AT5G45340.2 | 26.408 | 284 | 185 | 11 | 42 | 320 | 35 | 299 | 5.26e-23 | 99.4 |
Msa1275400 | AT5G45340.1 | 26.056 | 284 | 186 | 11 | 42 | 320 | 35 | 299 | 6.84e-23 | 99.0 |
Msa1275400 | AT5G05690.2 | 28.814 | 295 | 176 | 12 | 43 | 323 | 31 | 305 | 9.15e-23 | 98.2 |
Msa1275400 | AT5G05690.1 | 28.814 | 295 | 176 | 12 | 43 | 323 | 31 | 305 | 1.51e-22 | 98.2 |
Msa1275400 | AT5G38970.3 | 22.973 | 296 | 204 | 8 | 35 | 323 | 26 | 304 | 2.50e-22 | 97.1 |
Msa1275400 | AT5G38970.1 | 22.973 | 296 | 204 | 8 | 35 | 323 | 26 | 304 | 3.51e-22 | 97.1 |
Msa1275400 | AT1G12740.2 | 27.687 | 307 | 194 | 12 | 30 | 321 | 18 | 311 | 3.68e-22 | 97.1 |
Msa1275400 | AT3G30180.1 | 26.351 | 296 | 196 | 11 | 33 | 323 | 26 | 304 | 3.59e-21 | 94.0 |
Msa1275400 | AT1G19630.2 | 23.264 | 288 | 209 | 9 | 34 | 315 | 25 | 306 | 1.82e-20 | 91.7 |
Msa1275400 | AT1G19630.1 | 22.917 | 288 | 210 | 9 | 34 | 315 | 25 | 306 | 2.03e-20 | 92.0 |
Msa1275400 | AT1G19630.3 | 22.917 | 288 | 210 | 9 | 34 | 315 | 25 | 306 | 2.17e-20 | 91.7 |
Msa1275400 | AT1G65670.1 | 25.490 | 306 | 203 | 8 | 23 | 321 | 15 | 302 | 6.96e-20 | 90.5 |
Msa1275400 | AT4G15300.3 | 25.850 | 294 | 197 | 8 | 30 | 316 | 12 | 291 | 2.03e-19 | 89.0 |
Msa1275400 | AT4G15300.2 | 25.850 | 294 | 197 | 8 | 30 | 316 | 22 | 301 | 2.34e-19 | 89.0 |
Msa1275400 | AT3G50660.2 | 24.688 | 320 | 194 | 14 | 37 | 323 | 33 | 338 | 3.64e-19 | 88.2 |
Msa1275400 | AT3G50660.1 | 24.062 | 320 | 196 | 14 | 37 | 323 | 33 | 338 | 5.27e-19 | 87.8 |
Msa1275400 | AT1G55940.2 | 21.698 | 318 | 218 | 11 | 23 | 323 | 25 | 328 | 5.13e-16 | 79.0 |
Msa1275400 | AT1G55940.1 | 21.519 | 316 | 221 | 10 | 23 | 323 | 25 | 328 | 5.16e-16 | 79.0 |
Msa1275400 | AT4G15396.4 | 21.843 | 293 | 215 | 6 | 32 | 321 | 24 | 305 | 8.01e-16 | 78.2 |
Msa1275400 | AT4G15396.1 | 21.843 | 293 | 215 | 6 | 32 | 321 | 24 | 305 | 1.02e-15 | 78.2 |
Msa1275400 | AT4G15396.3 | 21.843 | 293 | 215 | 6 | 32 | 321 | 24 | 305 | 1.21e-15 | 77.8 |
Msa1275400 | AT4G15396.2 | 21.843 | 293 | 215 | 6 | 32 | 321 | 24 | 305 | 1.25e-15 | 77.8 |
Msa1275400 | AT1G78490.2 | 20.588 | 306 | 230 | 5 | 23 | 323 | 15 | 312 | 1.32e-15 | 77.4 |
Msa1275400 | AT1G78490.1 | 20.588 | 306 | 230 | 5 | 23 | 323 | 15 | 312 | 1.47e-15 | 77.4 |
Msa1275400 | AT4G15300.1 | 23.885 | 314 | 200 | 9 | 30 | 316 | 12 | 313 | 2.96e-14 | 73.6 |
Msa1275400 | AT2G42850.2 | 25.436 | 287 | 190 | 12 | 43 | 318 | 45 | 318 | 4.25e-14 | 72.8 |
Msa1275400 | AT2G29090.3 | 26.293 | 232 | 157 | 8 | 96 | 321 | 1 | 224 | 9.77e-14 | 71.6 |
Msa1275400 | AT2G42850.1 | 25.436 | 287 | 190 | 12 | 43 | 318 | 45 | 318 | 1.03e-13 | 72.0 |
Msa1275400 | AT4G15393.2 | 20.795 | 327 | 232 | 8 | 1 | 323 | 2 | 305 | 3.27e-13 | 70.5 |
Msa1275400 | AT4G15393.1 | 20.795 | 327 | 232 | 8 | 1 | 323 | 2 | 305 | 3.50e-13 | 70.1 |
Msa1275400 | AT3G44970.2 | 22.654 | 309 | 220 | 7 | 23 | 323 | 15 | 312 | 5.04e-12 | 66.6 |
Msa1275400 | AT3G44970.1 | 22.654 | 309 | 220 | 7 | 23 | 323 | 15 | 312 | 7.45e-12 | 66.2 |
Msa1275400 | AT3G53280.1 | 23.453 | 307 | 197 | 11 | 43 | 321 | 28 | 324 | 9.71e-12 | 65.9 |
Msa1275400 | AT2G45560.1 | 23.457 | 324 | 198 | 15 | 35 | 323 | 30 | 338 | 1.62e-11 | 65.5 |
Msa1275400 | AT2G45550.1 | 22.468 | 316 | 203 | 11 | 39 | 323 | 34 | 338 | 4.19e-11 | 64.3 |
Msa1275400 | AT3G26170.1 | 23.416 | 363 | 206 | 15 | 1 | 323 | 1 | 331 | 5.53e-11 | 63.9 |
Find 51 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTAGCTTAGTGATCGATTT+TGG | 0.175863 | 8_3:-9321538 | None:intergenic |
TGTACATAACTAATGTATTT+TGG | 0.219074 | 8_3:-9321627 | None:intergenic |
AGCAAAACCAGGTGCCTTTA+TGG | 0.221809 | 8_3:-9321851 | None:intergenic |
AAATGGAAATACATTGGATT+TGG | 0.256548 | 8_3:+9320944 | None:intergenic |
AGATGAAAAGTGTTTGAAAA+AGG | 0.264720 | 8_3:-9321118 | None:intergenic |
GACATGGGATGGCCTATTAT+TGG | 0.274318 | 8_3:+9321084 | Msa1275400:CDS |
AAACATTCTTCATCTCATTA+AGG | 0.297114 | 8_3:-9321720 | None:intergenic |
CCGGTCATCGTCAATAAATT+TGG | 0.306182 | 8_3:+9321784 | Msa1275400:CDS |
TGGAGATTCATTTAACGTTA+TGG | 0.314929 | 8_3:+9321804 | Msa1275400:CDS |
AATCGATCACTAAGCTAGTA+TGG | 0.334069 | 8_3:+9321542 | Msa1275400:CDS |
ATCTCATTAAGGAACTCAAC+AGG | 0.376829 | 8_3:-9321709 | None:intergenic |
CTGATAGCGCTATTGCTTAG+TGG | 0.378215 | 8_3:+9322151 | Msa1275400:CDS |
GCAAAACCAGGTGCCTTTAT+GGG | 0.400526 | 8_3:-9321850 | None:intergenic |
ACATGGGATGGCCTATTATT+GGG | 0.401969 | 8_3:+9321085 | Msa1275400:CDS |
ATGTCATTGACAAATTCATC+AGG | 0.411182 | 8_3:-9321147 | None:intergenic |
GGCCACATGTTCCCAATAAT+AGG | 0.413146 | 8_3:-9321096 | None:intergenic |
TCATTTAACGTTATGGCTGC+TGG | 0.422801 | 8_3:+9321811 | Msa1275400:CDS |
TTTGGAAATAAACGACGAAA+AGG | 0.428658 | 8_3:+9322093 | Msa1275400:CDS |
ATGTACAAGACACACTTGTA+TGG | 0.428727 | 8_3:+9321436 | Msa1275400:CDS |
CCCATGTCACCAGGAGGTAG+TGG | 0.466764 | 8_3:-9321069 | None:intergenic |
CCAAATTTATTGACGATGAC+CGG | 0.477081 | 8_3:-9321784 | None:intergenic |
AATACCTATGTTCACCACTT+AGG | 0.479455 | 8_3:-9321573 | None:intergenic |
TCCACTACCTCCTGGTGACA+TGG | 0.483202 | 8_3:+9321068 | Msa1275400:CDS |
TACCTCCTGGTGACATGGGA+TGG | 0.489770 | 8_3:+9321073 | Msa1275400:CDS |
TACAATCTATTGTTGATGAA+AGG | 0.498853 | 8_3:+9322014 | Msa1275400:CDS |
TGCTTTCAACAAAGCACTCA+AGG | 0.500116 | 8_3:+9321870 | Msa1275400:CDS |
AATTTAGGCACGTAAGAAGT+TGG | 0.501299 | 8_3:+9321982 | Msa1275400:intron |
GACAGATGATGTGAACTTTG+AGG | 0.520859 | 8_3:+9321507 | Msa1275400:CDS |
TTGGAAATAAACGACGAAAA+GGG | 0.523297 | 8_3:+9322094 | Msa1275400:CDS |
GCAGAAGTGACTATGATGCT+TGG | 0.539245 | 8_3:-9321463 | None:intergenic |
TTGGCTTTCTTCAAACAAAG+TGG | 0.553244 | 8_3:-9322229 | None:intergenic |
CAAGTGTGTCTTGTACATAA+CGG | 0.560883 | 8_3:-9321431 | None:intergenic |
ATAGGCCATCCCATGTCACC+AGG | 0.570615 | 8_3:-9321078 | None:intergenic |
TTTATGCCCATAAAGGCACC+TGG | 0.571604 | 8_3:+9321844 | Msa1275400:CDS |
TTCTGCTGCTATGTGCAAGA+AGG | 0.579434 | 8_3:+9321480 | Msa1275400:CDS |
GATACCTAAGTGGTGAACAT+AGG | 0.581047 | 8_3:+9321569 | Msa1275400:CDS |
CCACTACCTCCTGGTGACAT+GGG | 0.587904 | 8_3:+9321069 | Msa1275400:CDS |
GGCCTATTATTGGGAACATG+TGG | 0.591942 | 8_3:+9321094 | Msa1275400:CDS |
TTGTGAGGAATTTGAATGTG+TGG | 0.606895 | 8_3:+9321013 | Msa1275400:CDS |
CTAGTCACTTCTCCTATCGT+TGG | 0.613545 | 8_3:+9321604 | Msa1275400:CDS |
GATGATGTGAACTTTGAGGA+AGG | 0.613821 | 8_3:+9321511 | Msa1275400:CDS |
AAAGGACATCCACTACCTCC+TGG | 0.616462 | 8_3:+9321060 | Msa1275400:CDS |
GCTTTGTTGAAAGCAAAACC+AGG | 0.621354 | 8_3:-9321862 | None:intergenic |
ATTGTAGCATCCTAGCAAAG+TGG | 0.639328 | 8_3:-9320977 | None:intergenic |
CATTAGCAACTGCTATGATG+TGG | 0.640407 | 8_3:+9322182 | Msa1275400:CDS |
TCTCATTAAGGAACTCAACA+GGG | 0.659553 | 8_3:-9321708 | None:intergenic |
TGTCATTGACAAATTCATCA+GGG | 0.660537 | 8_3:-9321146 | None:intergenic |
ACTTTGTTTGAAGAAAGCCA+AGG | 0.670445 | 8_3:+9322231 | Msa1275400:CDS |
TATGTACATACAACGCATTG+AGG | 0.680590 | 8_3:+9321642 | Msa1275400:CDS |
GTATGGACTAGATACCTAAG+TGG | 0.682431 | 8_3:+9321559 | Msa1275400:CDS |
GGCCATCCCATGTCACCAGG+AGG | 0.688276 | 8_3:-9321075 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGAAAAAGGAAAAAAGTA+GGG | - | chr8_3:9321198-9321217 | None:intergenic | 20.0% |
!! | AAAAGAAAAAGGAAAAAAGT+AGG | - | chr8_3:9321199-9321218 | None:intergenic | 20.0% |
!! | AGGATTAAAGAAAAAGAAAA+AGG | - | chr8_3:9321210-9321229 | None:intergenic | 20.0% |
!!! | AATCCTTTTTCTATAATAGT+TGG | + | chr8_3:9321224-9321243 | Msa1275400:intron | 20.0% |
!!! | TGTACATAACTAATGTATTT+TGG | - | chr8_3:9321630-9321649 | None:intergenic | 20.0% |
!!! | AATGTGAAAGATGATTTTAA+AGG | - | chr8_3:9321746-9321765 | None:intergenic | 20.0% |
!!! | AATCATCTTTCACATTTTTT+TGG | + | chr8_3:9321750-9321769 | Msa1275400:CDS | 20.0% |
!!! | ATCATCTTTCACATTTTTTT+GGG | + | chr8_3:9321751-9321770 | Msa1275400:CDS | 20.0% |
!! | AAGAAGAATGAGAAAATAAA+AGG | - | chr8_3:9321918-9321937 | None:intergenic | 20.0% |
!!! | AGATCTTTTAGATATTCTTT+TGG | + | chr8_3:9322075-9322094 | Msa1275400:CDS | 20.0% |
!! | AAAGAAAAAGGAAAAAAGTA+GGG | - | chr8_3:9321198-9321217 | None:intergenic | 20.0% |
!! | AAAAGAAAAAGGAAAAAAGT+AGG | - | chr8_3:9321199-9321218 | None:intergenic | 20.0% |
!! | AGGATTAAAGAAAAAGAAAA+AGG | - | chr8_3:9321210-9321229 | None:intergenic | 20.0% |
!!! | AATCCTTTTTCTATAATAGT+TGG | + | chr8_3:9321224-9321243 | Msa1275400:intron | 20.0% |
!!! | TGTACATAACTAATGTATTT+TGG | - | chr8_3:9321630-9321649 | None:intergenic | 20.0% |
!!! | AATGTGAAAGATGATTTTAA+AGG | - | chr8_3:9321746-9321765 | None:intergenic | 20.0% |
!!! | AATCATCTTTCACATTTTTT+TGG | + | chr8_3:9321750-9321769 | Msa1275400:CDS | 20.0% |
!!! | ATCATCTTTCACATTTTTTT+GGG | + | chr8_3:9321751-9321770 | Msa1275400:CDS | 20.0% |
!! | AAGAAGAATGAGAAAATAAA+AGG | - | chr8_3:9321918-9321937 | None:intergenic | 20.0% |
!!! | AGATCTTTTAGATATTCTTT+TGG | + | chr8_3:9322075-9322094 | Msa1275400:CDS | 20.0% |
!! | GATTTTAAACTGAGAAAGAA+AGG | + | chr8_3:9321042-9321061 | Msa1275400:CDS | 25.0% |
!!! | GATGAAAAGTGTTTGAAAAA+GGG | - | chr8_3:9321120-9321139 | None:intergenic | 25.0% |
!!! | AGATGAAAAGTGTTTGAAAA+AGG | - | chr8_3:9321121-9321140 | None:intergenic | 25.0% |
! | AGACCAACTATTATAGAAAA+AGG | - | chr8_3:9321230-9321249 | None:intergenic | 25.0% |
! | CATCAACAACAAGTTAATAT+TGG | - | chr8_3:9321394-9321413 | None:intergenic | 25.0% |
! | AAACATTCTTCATCTCATTA+AGG | - | chr8_3:9321723-9321742 | None:intergenic | 25.0% |
! | TCACTTTGTATACCTAATTT+AGG | + | chr8_3:9321967-9321986 | Msa1275400:intron | 25.0% |
!! | TACAATCTATTGTTGATGAA+AGG | + | chr8_3:9322014-9322033 | Msa1275400:CDS | 25.0% |
!! | GATTTTAAACTGAGAAAGAA+AGG | + | chr8_3:9321042-9321061 | Msa1275400:CDS | 25.0% |
!!! | GATGAAAAGTGTTTGAAAAA+GGG | - | chr8_3:9321120-9321139 | None:intergenic | 25.0% |
!!! | AGATGAAAAGTGTTTGAAAA+AGG | - | chr8_3:9321121-9321140 | None:intergenic | 25.0% |
! | AGACCAACTATTATAGAAAA+AGG | - | chr8_3:9321230-9321249 | None:intergenic | 25.0% |
! | CATCAACAACAAGTTAATAT+TGG | - | chr8_3:9321394-9321413 | None:intergenic | 25.0% |
! | AAACATTCTTCATCTCATTA+AGG | - | chr8_3:9321723-9321742 | None:intergenic | 25.0% |
! | TCACTTTGTATACCTAATTT+AGG | + | chr8_3:9321967-9321986 | Msa1275400:intron | 25.0% |
!! | TACAATCTATTGTTGATGAA+AGG | + | chr8_3:9322014-9322033 | Msa1275400:CDS | 25.0% |
! | ATTTTGCTGACAAAATTGTG+AGG | + | chr8_3:9320998-9321017 | Msa1275400:CDS | 30.0% |
TGTCATTGACAAATTCATCA+GGG | - | chr8_3:9321149-9321168 | None:intergenic | 30.0% | |
ATGTCATTGACAAATTCATC+AGG | - | chr8_3:9321150-9321169 | None:intergenic | 30.0% | |
ACGAAGAAAGTAAATAGCAA+AGG | - | chr8_3:9321257-9321276 | None:intergenic | 30.0% | |
TGTTGTTGATGTTTCAGATA+TGG | + | chr8_3:9321403-9321422 | Msa1275400:intron | 30.0% | |
TGGAGATTCATTTAACGTTA+TGG | + | chr8_3:9321804-9321823 | Msa1275400:CDS | 30.0% | |
! | ATTCTCTTTTATGCCCATAA+AGG | + | chr8_3:9321837-9321856 | Msa1275400:CDS | 30.0% |
TTTGGAAATAAACGACGAAA+AGG | + | chr8_3:9322093-9322112 | Msa1275400:CDS | 30.0% | |
TTGGAAATAAACGACGAAAA+GGG | + | chr8_3:9322094-9322113 | Msa1275400:CDS | 30.0% | |
! | ATTTTGCTGACAAAATTGTG+AGG | + | chr8_3:9320998-9321017 | Msa1275400:CDS | 30.0% |
TGTCATTGACAAATTCATCA+GGG | - | chr8_3:9321149-9321168 | None:intergenic | 30.0% | |
ATGTCATTGACAAATTCATC+AGG | - | chr8_3:9321150-9321169 | None:intergenic | 30.0% | |
ACGAAGAAAGTAAATAGCAA+AGG | - | chr8_3:9321257-9321276 | None:intergenic | 30.0% | |
TGTTGTTGATGTTTCAGATA+TGG | + | chr8_3:9321403-9321422 | Msa1275400:intron | 30.0% | |
TGGAGATTCATTTAACGTTA+TGG | + | chr8_3:9321804-9321823 | Msa1275400:CDS | 30.0% | |
! | ATTCTCTTTTATGCCCATAA+AGG | + | chr8_3:9321837-9321856 | Msa1275400:CDS | 30.0% |
TTTGGAAATAAACGACGAAA+AGG | + | chr8_3:9322093-9322112 | Msa1275400:CDS | 30.0% | |
TTGGAAATAAACGACGAAAA+GGG | + | chr8_3:9322094-9322113 | Msa1275400:CDS | 30.0% | |
!!! | ATTTTTGTTGCCACTTTGCT+AGG | + | chr8_3:9320967-9320986 | Msa1275400:CDS | 35.0% |
TTGTGAGGAATTTGAATGTG+TGG | + | chr8_3:9321013-9321032 | Msa1275400:CDS | 35.0% | |
CAAGTGTGTCTTGTACATAA+CGG | - | chr8_3:9321434-9321453 | None:intergenic | 35.0% | |
ATGTACAAGACACACTTGTA+TGG | + | chr8_3:9321436-9321455 | Msa1275400:CDS | 35.0% | |
!! | ACTAGCTTAGTGATCGATTT+TGG | - | chr8_3:9321541-9321560 | None:intergenic | 35.0% |
AATCGATCACTAAGCTAGTA+TGG | + | chr8_3:9321542-9321561 | Msa1275400:CDS | 35.0% | |
AATACCTATGTTCACCACTT+AGG | - | chr8_3:9321576-9321595 | None:intergenic | 35.0% | |
!!! | AATGTATTTTGGCCAACGAT+AGG | - | chr8_3:9321619-9321638 | None:intergenic | 35.0% |
TATGTACATACAACGCATTG+AGG | + | chr8_3:9321642-9321661 | Msa1275400:CDS | 35.0% | |
TCTCATTAAGGAACTCAACA+GGG | - | chr8_3:9321711-9321730 | None:intergenic | 35.0% | |
ATCTCATTAAGGAACTCAAC+AGG | - | chr8_3:9321712-9321731 | None:intergenic | 35.0% | |
CCAAATTTATTGACGATGAC+CGG | - | chr8_3:9321787-9321806 | None:intergenic | 35.0% | |
ACTTCTTACGTGCCTAAATT+AGG | - | chr8_3:9321982-9322001 | None:intergenic | 35.0% | |
AATTTAGGCACGTAAGAAGT+TGG | + | chr8_3:9321982-9322001 | Msa1275400:intron | 35.0% | |
CGAAAAGGGTGAAAAATTAG+AGG | + | chr8_3:9322108-9322127 | Msa1275400:CDS | 35.0% | |
! | TTGGCTTTCTTCAAACAAAG+TGG | - | chr8_3:9322232-9322251 | None:intergenic | 35.0% |
!!! | ATTTTTGTTGCCACTTTGCT+AGG | + | chr8_3:9320967-9320986 | Msa1275400:CDS | 35.0% |
TTGTGAGGAATTTGAATGTG+TGG | + | chr8_3:9321013-9321032 | Msa1275400:CDS | 35.0% | |
CAAGTGTGTCTTGTACATAA+CGG | - | chr8_3:9321434-9321453 | None:intergenic | 35.0% | |
ATGTACAAGACACACTTGTA+TGG | + | chr8_3:9321436-9321455 | Msa1275400:CDS | 35.0% | |
!! | ACTAGCTTAGTGATCGATTT+TGG | - | chr8_3:9321541-9321560 | None:intergenic | 35.0% |
AATCGATCACTAAGCTAGTA+TGG | + | chr8_3:9321542-9321561 | Msa1275400:CDS | 35.0% | |
AATACCTATGTTCACCACTT+AGG | - | chr8_3:9321576-9321595 | None:intergenic | 35.0% | |
!!! | AATGTATTTTGGCCAACGAT+AGG | - | chr8_3:9321619-9321638 | None:intergenic | 35.0% |
TATGTACATACAACGCATTG+AGG | + | chr8_3:9321642-9321661 | Msa1275400:CDS | 35.0% | |
TCTCATTAAGGAACTCAACA+GGG | - | chr8_3:9321711-9321730 | None:intergenic | 35.0% | |
ATCTCATTAAGGAACTCAAC+AGG | - | chr8_3:9321712-9321731 | None:intergenic | 35.0% | |
CCAAATTTATTGACGATGAC+CGG | - | chr8_3:9321787-9321806 | None:intergenic | 35.0% | |
ACTTCTTACGTGCCTAAATT+AGG | - | chr8_3:9321982-9322001 | None:intergenic | 35.0% | |
AATTTAGGCACGTAAGAAGT+TGG | + | chr8_3:9321982-9322001 | Msa1275400:intron | 35.0% | |
CGAAAAGGGTGAAAAATTAG+AGG | + | chr8_3:9322108-9322127 | Msa1275400:CDS | 35.0% | |
! | TTGGCTTTCTTCAAACAAAG+TGG | - | chr8_3:9322232-9322251 | None:intergenic | 35.0% |
ATTGTAGCATCCTAGCAAAG+TGG | - | chr8_3:9320980-9320999 | None:intergenic | 40.0% | |
ACATGGGATGGCCTATTATT+GGG | + | chr8_3:9321085-9321104 | Msa1275400:CDS | 40.0% | |
GACAGATGATGTGAACTTTG+AGG | + | chr8_3:9321507-9321526 | Msa1275400:CDS | 40.0% | |
! | GATGATGTGAACTTTGAGGA+AGG | + | chr8_3:9321511-9321530 | Msa1275400:CDS | 40.0% |
!! | GTATGGACTAGATACCTAAG+TGG | + | chr8_3:9321559-9321578 | Msa1275400:CDS | 40.0% |
GATACCTAAGTGGTGAACAT+AGG | + | chr8_3:9321569-9321588 | Msa1275400:CDS | 40.0% | |
!!! | TTTTTTGGGATCTTGCGATC+CGG | + | chr8_3:9321765-9321784 | Msa1275400:CDS | 40.0% |
CCGGTCATCGTCAATAAATT+TGG | + | chr8_3:9321784-9321803 | Msa1275400:CDS | 40.0% | |
TCATTTAACGTTATGGCTGC+TGG | + | chr8_3:9321811-9321830 | Msa1275400:CDS | 40.0% | |
! | GCTTTGTTGAAAGCAAAACC+AGG | - | chr8_3:9321865-9321884 | None:intergenic | 40.0% |
! | TGCTTTCAACAAAGCACTCA+AGG | + | chr8_3:9321870-9321889 | Msa1275400:CDS | 40.0% |
! | TTCAACAAAGCACTCAAGGT+TGG | + | chr8_3:9321874-9321893 | Msa1275400:intron | 40.0% |
!! | AGGAAAGCGCTGCTAAAAAA+TGG | + | chr8_3:9322034-9322053 | Msa1275400:CDS | 40.0% |
!! | GGAAAGCGCTGCTAAAAAAT+GGG | + | chr8_3:9322035-9322054 | Msa1275400:CDS | 40.0% |
CATTAGCAACTGCTATGATG+TGG | + | chr8_3:9322182-9322201 | Msa1275400:CDS | 40.0% | |
ATTGTAGCATCCTAGCAAAG+TGG | - | chr8_3:9320980-9320999 | None:intergenic | 40.0% | |
ACATGGGATGGCCTATTATT+GGG | + | chr8_3:9321085-9321104 | Msa1275400:CDS | 40.0% | |
GACAGATGATGTGAACTTTG+AGG | + | chr8_3:9321507-9321526 | Msa1275400:CDS | 40.0% | |
! | GATGATGTGAACTTTGAGGA+AGG | + | chr8_3:9321511-9321530 | Msa1275400:CDS | 40.0% |
!! | GTATGGACTAGATACCTAAG+TGG | + | chr8_3:9321559-9321578 | Msa1275400:CDS | 40.0% |
GATACCTAAGTGGTGAACAT+AGG | + | chr8_3:9321569-9321588 | Msa1275400:CDS | 40.0% | |
!!! | TTTTTTGGGATCTTGCGATC+CGG | + | chr8_3:9321765-9321784 | Msa1275400:CDS | 40.0% |
CCGGTCATCGTCAATAAATT+TGG | + | chr8_3:9321784-9321803 | Msa1275400:CDS | 40.0% | |
TCATTTAACGTTATGGCTGC+TGG | + | chr8_3:9321811-9321830 | Msa1275400:CDS | 40.0% | |
! | GCTTTGTTGAAAGCAAAACC+AGG | - | chr8_3:9321865-9321884 | None:intergenic | 40.0% |
! | TGCTTTCAACAAAGCACTCA+AGG | + | chr8_3:9321870-9321889 | Msa1275400:CDS | 40.0% |
! | TTCAACAAAGCACTCAAGGT+TGG | + | chr8_3:9321874-9321893 | Msa1275400:intron | 40.0% |
!! | AGGAAAGCGCTGCTAAAAAA+TGG | + | chr8_3:9322034-9322053 | Msa1275400:CDS | 40.0% |
!! | GGAAAGCGCTGCTAAAAAAT+GGG | + | chr8_3:9322035-9322054 | Msa1275400:CDS | 40.0% |
CATTAGCAACTGCTATGATG+TGG | + | chr8_3:9322182-9322201 | Msa1275400:CDS | 40.0% | |
GACATGGGATGGCCTATTAT+TGG | + | chr8_3:9321084-9321103 | Msa1275400:CDS | 45.0% | |
GGCCTATTATTGGGAACATG+TGG | + | chr8_3:9321094-9321113 | Msa1275400:CDS | 45.0% | |
GGCCACATGTTCCCAATAAT+AGG | - | chr8_3:9321099-9321118 | None:intergenic | 45.0% | |
GCAGAAGTGACTATGATGCT+TGG | - | chr8_3:9321466-9321485 | None:intergenic | 45.0% | |
TTCTGCTGCTATGTGCAAGA+AGG | + | chr8_3:9321480-9321499 | Msa1275400:CDS | 45.0% | |
CTAGTCACTTCTCCTATCGT+TGG | + | chr8_3:9321604-9321623 | Msa1275400:CDS | 45.0% | |
!! | TTTATGCCCATAAAGGCACC+TGG | + | chr8_3:9321844-9321863 | Msa1275400:CDS | 45.0% |
GCAAAACCAGGTGCCTTTAT+GGG | - | chr8_3:9321853-9321872 | None:intergenic | 45.0% | |
AGCAAAACCAGGTGCCTTTA+TGG | - | chr8_3:9321854-9321873 | None:intergenic | 45.0% | |
! | CTGATAGCGCTATTGCTTAG+TGG | + | chr8_3:9322151-9322170 | Msa1275400:CDS | 45.0% |
GACATGGGATGGCCTATTAT+TGG | + | chr8_3:9321084-9321103 | Msa1275400:CDS | 45.0% | |
GGCCTATTATTGGGAACATG+TGG | + | chr8_3:9321094-9321113 | Msa1275400:CDS | 45.0% | |
GGCCACATGTTCCCAATAAT+AGG | - | chr8_3:9321099-9321118 | None:intergenic | 45.0% | |
GCAGAAGTGACTATGATGCT+TGG | - | chr8_3:9321466-9321485 | None:intergenic | 45.0% | |
TTCTGCTGCTATGTGCAAGA+AGG | + | chr8_3:9321480-9321499 | Msa1275400:CDS | 45.0% | |
CTAGTCACTTCTCCTATCGT+TGG | + | chr8_3:9321604-9321623 | Msa1275400:CDS | 45.0% | |
!! | TTTATGCCCATAAAGGCACC+TGG | + | chr8_3:9321844-9321863 | Msa1275400:CDS | 45.0% |
GCAAAACCAGGTGCCTTTAT+GGG | - | chr8_3:9321853-9321872 | None:intergenic | 45.0% | |
AGCAAAACCAGGTGCCTTTA+TGG | - | chr8_3:9321854-9321873 | None:intergenic | 45.0% | |
! | CTGATAGCGCTATTGCTTAG+TGG | + | chr8_3:9322151-9322170 | Msa1275400:CDS | 45.0% |
AAAGGACATCCACTACCTCC+TGG | + | chr8_3:9321060-9321079 | Msa1275400:CDS | 50.0% | |
AAAGGACATCCACTACCTCC+TGG | + | chr8_3:9321060-9321079 | Msa1275400:CDS | 50.0% | |
TCCACTACCTCCTGGTGACA+TGG | + | chr8_3:9321068-9321087 | Msa1275400:CDS | 55.0% | |
CCACTACCTCCTGGTGACAT+GGG | + | chr8_3:9321069-9321088 | Msa1275400:CDS | 55.0% | |
TACCTCCTGGTGACATGGGA+TGG | + | chr8_3:9321073-9321092 | Msa1275400:CDS | 55.0% | |
ATAGGCCATCCCATGTCACC+AGG | - | chr8_3:9321081-9321100 | None:intergenic | 55.0% | |
TCCACTACCTCCTGGTGACA+TGG | + | chr8_3:9321068-9321087 | Msa1275400:CDS | 55.0% | |
CCACTACCTCCTGGTGACAT+GGG | + | chr8_3:9321069-9321088 | Msa1275400:CDS | 55.0% | |
TACCTCCTGGTGACATGGGA+TGG | + | chr8_3:9321073-9321092 | Msa1275400:CDS | 55.0% | |
ATAGGCCATCCCATGTCACC+AGG | - | chr8_3:9321081-9321100 | None:intergenic | 55.0% | |
CCCATGTCACCAGGAGGTAG+TGG | - | chr8_3:9321072-9321091 | None:intergenic | 60.0% | |
CCCATGTCACCAGGAGGTAG+TGG | - | chr8_3:9321072-9321091 | None:intergenic | 60.0% | |
GGCCATCCCATGTCACCAGG+AGG | - | chr8_3:9321078-9321097 | None:intergenic | 65.0% | |
GGCCATCCCATGTCACCAGG+AGG | - | chr8_3:9321078-9321097 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 9320946 | 9322252 | 9320946 | ID=Msa1275400;Name=Msa1275400 |
chr8_3 | mRNA | 9320946 | 9322252 | 9320946 | ID=Msa1275400-mRNA-1;Parent=Msa1275400;Name=Msa1275400-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.33|1|1|1|3|0|323 |
chr8_3 | exon | 9320946 | 9321178 | 9320946 | ID=Msa1275400-mRNA-1:exon:3922;Parent=Msa1275400-mRNA-1 |
chr8_3 | exon | 9321420 | 9321891 | 9321420 | ID=Msa1275400-mRNA-1:exon:3923;Parent=Msa1275400-mRNA-1 |
chr8_3 | exon | 9321989 | 9322252 | 9321989 | ID=Msa1275400-mRNA-1:exon:3924;Parent=Msa1275400-mRNA-1 |
chr8_3 | CDS | 9320946 | 9321178 | 9320946 | ID=Msa1275400-mRNA-1:cds;Parent=Msa1275400-mRNA-1 |
chr8_3 | CDS | 9321420 | 9321891 | 9321420 | ID=Msa1275400-mRNA-1:cds;Parent=Msa1275400-mRNA-1 |
chr8_3 | CDS | 9321989 | 9322252 | 9321989 | ID=Msa1275400-mRNA-1:cds;Parent=Msa1275400-mRNA-1 |
Gene Sequence |
Protein sequence |