AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1313600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313600 MtrunA17_Chr8g0339861 62.769 325 119 1 1 323 1 325 8.12e-151 432
Msa1313600 MtrunA17_Chr4g0000171 60.991 323 126 0 1 323 1 323 9.77e-151 426
Msa1313600 MtrunA17_Chr4g0013471 59.752 323 130 0 1 323 1 323 1.55e-146 418
Msa1313600 MtrunA17_Chr4g0000161 59.752 323 130 0 1 323 1 323 9.52e-146 414
Msa1313600 MtrunA17_Chr8g0381551 55.488 328 140 3 1 323 1 327 1.15e-134 385
Msa1313600 MtrunA17_Chr8g0381541 55.488 328 140 3 1 323 1 327 1.44e-132 386
Msa1313600 MtrunA17_Chr8g0381571 55.488 328 140 3 1 323 1 327 1.56e-132 385
Msa1313600 MtrunA17_Chr1g0161671 53.354 328 132 6 1 323 1 312 6.20e-110 322
Msa1313600 MtrunA17_Chr5g0400421 46.462 325 165 6 4 323 8 328 8.97e-85 263
Msa1313600 MtrunA17_Chr1g0161651 45.652 322 128 6 1 278 1 319 1.34e-84 258
Msa1313600 MtrunA17_Chr2g0293421 40.367 327 189 3 1 323 3 327 1.36e-83 261
Msa1313600 MtrunA17_Chr2g0293411 40.123 324 186 4 6 323 4 325 1.84e-81 255
Msa1313600 MtrunA17_Chr5g0400411 41.768 328 175 8 4 323 8 327 4.78e-68 220
Msa1313600 MtrunA17_Chr1g0161691 46.715 137 68 2 102 234 1 136 1.72e-37 130
Msa1313600 MtrunA17_Chr3g0089361 28.659 328 212 8 3 323 6 318 8.43e-35 132
Msa1313600 MtrunA17_Chr4g0044851 30.420 286 181 8 43 323 37 309 2.43e-34 130
Msa1313600 MtrunA17_Chr8g0388921 29.655 290 198 4 31 316 22 309 7.44e-31 121
Msa1313600 MtrunA17_Chr1g0153371 29.352 293 193 6 35 323 27 309 1.14e-30 120
Msa1313600 MtrunA17_Chr5g0408181 28.041 296 184 11 27 315 19 292 6.49e-28 112
Msa1313600 MtrunA17_Chr6g0455461 27.667 300 187 10 33 323 25 303 1.52e-27 111
Msa1313600 MtrunA17_Chr3g0078411 27.667 300 187 10 33 323 25 303 6.64e-27 110
Msa1313600 MtrunA17_Chr8g0373441 28.188 298 194 11 35 323 25 311 1.10e-26 108
Msa1313600 MtrunA17_Chr7g0219961 26.073 303 187 11 33 323 25 302 2.90e-26 108
Msa1313600 MtrunA17_Chr4g0044841 27.891 294 195 7 35 323 29 310 6.90e-26 107
Msa1313600 MtrunA17_Chr8g0369791 25.926 324 211 10 1 320 1 299 7.74e-26 107
Msa1313600 MtrunA17_Chr3g0113321 28.333 300 187 11 35 323 21 303 2.27e-25 105
Msa1313600 MtrunA17_Chr5g0443401 26.582 316 217 9 13 321 8 315 1.08e-24 103
Msa1313600 MtrunA17_Chr5g0397971 25.914 301 201 9 30 321 18 305 1.41e-24 103
Msa1313600 MtrunA17_Chr8g0341951 25.455 330 217 12 1 321 1 310 2.51e-24 102
Msa1313600 MtrunA17_Chr7g0226771 26.298 289 198 8 41 323 31 310 2.91e-24 102
Msa1313600 MtrunA17_Chr6g0478161 26.224 286 191 10 43 321 50 322 2.31e-22 97.4
Msa1313600 MtrunA17_Chr5g0403931 26.855 283 187 11 43 316 36 307 2.39e-22 97.1
Msa1313600 MtrunA17_Chr5g0443731 24.028 283 208 4 38 316 24 303 3.80e-22 96.7
Msa1313600 MtrunA17_Chr1g0164371 25.267 281 191 8 37 312 38 304 3.89e-21 93.6
Msa1313600 MtrunA17_Chr3g0089291 26.337 243 167 5 84 322 1 235 4.54e-21 90.1
Msa1313600 MtrunA17_Chr8g0380471 27.972 286 197 6 35 316 28 308 1.40e-20 92.0
Msa1313600 MtrunA17_Chr8g0372411 27.241 290 185 11 44 321 40 315 1.69e-20 91.7
Msa1313600 MtrunA17_Chr3g0089351 26.033 242 171 4 84 323 1 236 1.89e-20 90.9
Msa1313600 MtrunA17_Chr3g0107511 26.978 278 191 7 43 314 33 304 1.10e-19 89.4
Msa1313600 MtrunA17_Chr3g0107501 25.795 283 186 8 43 313 33 303 2.64e-19 88.2
Msa1313600 MtrunA17_Chr8g0372711 23.381 278 197 9 45 315 48 316 2.68e-19 88.2
Msa1313600 MtrunA17_Chr3g0089381 29.286 140 95 2 184 323 2 137 2.14e-15 73.9
Msa1313600 MtrunA17_Chr5g0436991 36.111 108 62 3 216 323 55 155 2.45e-13 67.0
Msa1313600 MtrunA17_Chr3g0089371 45.238 84 44 2 34 115 31 114 1.18e-12 66.2
Msa1313600 MtrunA17_Chr8g0380931 22.222 297 184 11 43 316 62 334 1.95e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313600 AT2G32440.2 40.000 305 177 3 23 323 24 326 6.79e-81 254
Msa1313600 AT2G32440.1 40.000 305 177 3 23 323 24 326 6.79e-81 254
Msa1313600 AT1G05160.2 39.198 324 189 5 5 323 7 327 1.53e-79 250
Msa1313600 AT1G05160.1 39.198 324 189 5 5 323 7 327 1.53e-79 250
Msa1313600 AT5G36110.2 32.143 280 178 6 43 316 34 307 2.65e-37 137
Msa1313600 AT5G36110.1 31.579 285 183 6 43 321 34 312 2.42e-36 136
Msa1313600 AT5G36140.1 31.295 278 180 6 43 316 33 303 1.44e-35 131
Msa1313600 AT3G19270.1 28.671 286 185 9 43 323 34 305 2.72e-28 114
Msa1313600 AT3G19270.2 28.671 286 185 9 43 323 34 305 3.60e-28 114
Msa1313600 AT1G73340.1 26.962 293 193 10 37 321 37 316 5.79e-26 107
Msa1313600 AT4G19230.1 27.622 286 179 12 42 320 35 299 2.44e-25 105
Msa1313600 AT4G19230.2 27.622 286 179 12 42 320 35 299 2.88e-25 105
Msa1313600 AT4G36380.2 27.018 285 196 8 43 321 69 347 3.88e-25 105
Msa1313600 AT4G36380.1 27.018 285 196 8 43 321 69 347 8.09e-25 105
Msa1313600 AT2G29090.4 28.070 285 185 10 43 321 49 319 1.75e-24 102
Msa1313600 AT1G12740.3 27.907 301 195 10 30 321 18 305 3.73e-24 101
Msa1313600 AT2G29090.2 28.070 285 185 10 43 321 49 319 5.71e-24 102
Msa1313600 AT2G29090.1 28.070 285 185 10 43 321 49 319 5.71e-24 102
Msa1313600 AT3G13730.2 25.784 287 199 7 40 319 48 327 1.05e-23 101
Msa1313600 AT3G13730.1 25.784 287 199 7 40 319 48 327 1.10e-23 101
Msa1313600 AT1G12740.1 27.907 301 195 10 30 321 18 305 1.11e-23 101
Msa1313600 AT1G12740.4 27.907 301 195 10 30 321 18 305 1.17e-23 101
Msa1313600 AT5G45340.2 26.408 284 185 11 42 320 35 299 7.67e-23 98.6
Msa1313600 AT5G45340.1 26.408 284 185 11 42 320 35 299 1.14e-22 98.2
Msa1313600 AT5G05690.2 28.814 295 176 12 43 323 31 305 1.45e-22 97.4
Msa1313600 AT5G38970.3 22.973 296 204 8 35 323 26 304 2.27e-22 97.1
Msa1313600 AT5G05690.1 28.814 295 176 12 43 323 31 305 2.30e-22 97.4
Msa1313600 AT5G38970.1 22.973 296 204 8 35 323 26 304 3.16e-22 97.1
Msa1313600 AT1G12740.2 27.362 307 195 12 30 321 18 311 1.16e-21 95.5
Msa1313600 AT1G19630.2 23.611 288 208 9 34 315 25 306 2.62e-21 94.4
Msa1313600 AT1G19630.3 23.264 288 209 9 34 315 25 306 2.84e-21 94.4
Msa1313600 AT1G19630.1 23.264 288 209 9 34 315 25 306 2.98e-21 94.4
Msa1313600 AT3G30180.1 26.351 296 196 11 33 323 26 304 3.59e-21 94.0
Msa1313600 AT1G65670.1 25.490 306 203 8 23 321 15 302 7.58e-20 90.1
Msa1313600 AT4G15300.3 25.850 294 197 8 30 316 12 291 3.14e-19 88.6
Msa1313600 AT4G15300.2 25.850 294 197 8 30 316 22 301 3.31e-19 88.2
Msa1313600 AT3G50660.2 24.688 320 194 14 37 323 33 338 7.98e-19 87.0
Msa1313600 AT3G50660.1 24.688 320 194 14 37 323 33 338 1.18e-18 87.0
Msa1313600 AT1G55940.2 21.698 318 218 11 23 323 25 328 5.58e-16 79.0
Msa1313600 AT1G55940.1 21.519 316 221 10 23 323 25 328 5.71e-16 78.6
Msa1313600 AT4G15396.4 21.843 293 215 6 32 321 24 305 1.33e-15 77.4
Msa1313600 AT4G15396.1 21.843 293 215 6 32 321 24 305 1.42e-15 77.4
Msa1313600 AT4G15396.2 21.843 293 215 6 32 321 24 305 1.81e-15 77.0
Msa1313600 AT4G15396.3 21.843 293 215 6 32 321 24 305 1.99e-15 77.0
Msa1313600 AT1G78490.2 21.824 307 225 7 23 323 15 312 2.09e-15 77.0
Msa1313600 AT1G78490.1 21.824 307 225 7 23 323 15 312 2.35e-15 77.0
Msa1313600 AT4G15300.1 23.885 314 200 9 30 316 12 313 4.08e-14 73.2
Msa1313600 AT2G42850.2 25.436 287 190 12 43 318 45 318 5.62e-14 72.4
Msa1313600 AT2G29090.3 26.293 232 157 8 96 321 1 224 1.02e-13 71.6
Msa1313600 AT2G42850.1 25.436 287 190 12 43 318 45 318 1.34e-13 71.6
Msa1313600 AT4G15393.1 20.795 327 232 8 1 323 2 305 5.06e-13 69.7
Msa1313600 AT4G15393.2 20.795 327 232 8 1 323 2 305 5.17e-13 69.7
Msa1313600 AT3G44970.2 22.654 309 220 7 23 323 15 312 7.28e-12 65.9
Msa1313600 AT3G44970.1 22.654 309 220 7 23 323 15 312 9.19e-12 66.2
Msa1313600 AT2G45560.1 23.457 324 198 15 35 323 30 338 1.80e-11 65.1
Msa1313600 AT3G53280.1 23.948 309 193 12 43 321 28 324 2.97e-11 64.7
Msa1313600 AT2G45550.1 22.468 316 203 11 39 323 34 338 5.06e-11 63.9
Msa1313600 AT3G26170.1 23.416 363 206 15 1 323 1 331 9.27e-11 63.2

Find 51 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGCTTAGTGATCGATTT+TGG 0.175863 8_4:-11677843 None:intergenic
TGTACATAACTAATGTATTT+TGG 0.219074 8_4:-11677932 None:intergenic
AGCAAAACCAGGTGCCTTTA+TGG 0.221809 8_4:-11678156 None:intergenic
AAATGGAAATACATTGGATT+TGG 0.256548 8_4:+11677249 None:intergenic
GACATGGGATGGCCTATTAT+TGG 0.274318 8_4:+11677389 Msa1313600:CDS
AGATGAAAAGTGTTTGAAAA+AGG 0.282931 8_4:-11677423 None:intergenic
AAACATTCTTCATCTCATTA+AGG 0.297114 8_4:-11678025 None:intergenic
CCGGTCATCGTCAATAAATT+TGG 0.306182 8_4:+11678089 Msa1313600:CDS
TGGAGATTCATTTAACGTTA+TGG 0.314929 8_4:+11678109 Msa1313600:CDS
AATCGATCACTAAGCTAGTA+TGG 0.334069 8_4:+11677847 Msa1313600:CDS
ATCTCATTAAGGAACTCAAC+AGG 0.376829 8_4:-11678014 None:intergenic
CTGATAGCGCTATTGCTTAG+TGG 0.378215 8_4:+11678468 Msa1313600:CDS
GCAAAACCAGGTGCCTTTAT+GGG 0.400526 8_4:-11678155 None:intergenic
ACATGGGATGGCCTATTATT+GGG 0.401969 8_4:+11677390 Msa1313600:CDS
ATGTCATTGACAAATTCATC+AGG 0.411182 8_4:-11677452 None:intergenic
GGCCACATGTTCCCAATAAT+AGG 0.413146 8_4:-11677401 None:intergenic
TCATTTAACGTTATGGCTGC+TGG 0.422801 8_4:+11678116 Msa1313600:CDS
TTTGGAAATAAACGACGAAA+AGG 0.428658 8_4:+11678410 Msa1313600:CDS
ATGTACAAGACACACTTGTA+TGG 0.428727 8_4:+11677741 Msa1313600:CDS
CCCATGTCACCAGGAGGTAG+TGG 0.466764 8_4:-11677374 None:intergenic
CCAAATTTATTGACGATGAC+CGG 0.477081 8_4:-11678089 None:intergenic
AATACCTATGTTCACCACTT+AGG 0.479455 8_4:-11677878 None:intergenic
TCCACTACCTCCTGGTGACA+TGG 0.483202 8_4:+11677373 Msa1313600:CDS
TACCTCCTGGTGACATGGGA+TGG 0.489770 8_4:+11677378 Msa1313600:CDS
TACAATCTATTGTTGATGAA+AGG 0.498853 8_4:+11678331 Msa1313600:CDS
TGCTTTCAACAAAGCACTCA+AGG 0.500116 8_4:+11678175 Msa1313600:CDS
AATTTAGGCACGTAAGAAGT+TGG 0.501299 8_4:+11678299 Msa1313600:intron
GACAGATGATGTGAACTTTG+AGG 0.520859 8_4:+11677812 Msa1313600:CDS
TTGGAAATAAACGACGAAAA+GGG 0.523297 8_4:+11678411 Msa1313600:CDS
GCAGAAGTGACTATGATGCT+TGG 0.539245 8_4:-11677768 None:intergenic
TTGGCTTTCTTCAAACAAAG+TGG 0.553244 8_4:-11678546 None:intergenic
CAAGTGTGTCTTGTACATAA+CGG 0.560883 8_4:-11677736 None:intergenic
ATAGGCCATCCCATGTCACC+AGG 0.570615 8_4:-11677383 None:intergenic
TTTATGCCCATAAAGGCACC+TGG 0.571604 8_4:+11678149 Msa1313600:CDS
TTCTGCTGCTATGTGCAAGA+AGG 0.579434 8_4:+11677785 Msa1313600:CDS
GATACCTAAGTGGTGAACAT+AGG 0.581047 8_4:+11677874 Msa1313600:CDS
CCACTACCTCCTGGTGACAT+GGG 0.587904 8_4:+11677374 Msa1313600:CDS
GGCCTATTATTGGGAACATG+TGG 0.591942 8_4:+11677399 Msa1313600:CDS
CTGGTCACTTCTCCTATCGT+TGG 0.592260 8_4:+11677909 Msa1313600:CDS
TTGTGAGGAATTTGAATGTG+TGG 0.606895 8_4:+11677318 Msa1313600:CDS
GATGATGTGAACTTTGAGGA+AGG 0.613821 8_4:+11677816 Msa1313600:CDS
AAAGGACATCCACTACCTCC+TGG 0.616462 8_4:+11677365 Msa1313600:CDS
GCTTTGTTGAAAGCAAAACC+AGG 0.621354 8_4:-11678167 None:intergenic
ATTGTAGCATCCTAGCAAAG+TGG 0.639328 8_4:-11677282 None:intergenic
CATTAGCAACTGCTATGATG+TGG 0.640407 8_4:+11678499 Msa1313600:CDS
TCTCATTAAGGAACTCAACA+GGG 0.659553 8_4:-11678013 None:intergenic
TGTCATTGACAAATTCATCA+GGG 0.660537 8_4:-11677451 None:intergenic
ACTTTGTTTGAAGAAAGCCA+AGG 0.670445 8_4:+11678548 Msa1313600:CDS
TATGTACATACAACGCATTG+AGG 0.680590 8_4:+11677947 Msa1313600:CDS
GTATGGACTAGATACCTAAG+TGG 0.682431 8_4:+11677864 Msa1313600:CDS
GGCCATCCCATGTCACCAGG+AGG 0.688276 8_4:-11677380 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATTAAAGAAAAAGAAAA+AGG - chr8_4:11677515-11677534 None:intergenic 15.0%
!!! AATCTTTTTTCTATAATAGT+TGG + chr8_4:11677529-11677548 Msa1313600:intron 15.0%
!! AAGATTAAAGAAAAAGAAAA+AGG - chr8_4:11677515-11677534 None:intergenic 15.0%
!!! AATCTTTTTTCTATAATAGT+TGG + chr8_4:11677529-11677548 Msa1313600:intron 15.0%
!! AAAGAAAAAGGAAAAAAGTA+GGG - chr8_4:11677503-11677522 None:intergenic 20.0%
!! AAAAGAAAAAGGAAAAAAGT+AGG - chr8_4:11677504-11677523 None:intergenic 20.0%
!!! TGTACATAACTAATGTATTT+TGG - chr8_4:11677935-11677954 None:intergenic 20.0%
!!! AATGTGAAAGATGATTTTAA+AGG - chr8_4:11678051-11678070 None:intergenic 20.0%
!!! AATCATCTTTCACATTTTTT+TGG + chr8_4:11678055-11678074 Msa1313600:CDS 20.0%
!!! ATCATCTTTCACATTTTTTT+GGG + chr8_4:11678056-11678075 Msa1313600:CDS 20.0%
!! AAGAAGAATGAGAAAATAAA+AGG - chr8_4:11678223-11678242 None:intergenic 20.0%
!!! AGATCTTTTAGATATTCTTT+TGG + chr8_4:11678392-11678411 Msa1313600:CDS 20.0%
!! AAAGAAAAAGGAAAAAAGTA+GGG - chr8_4:11677503-11677522 None:intergenic 20.0%
!! AAAAGAAAAAGGAAAAAAGT+AGG - chr8_4:11677504-11677523 None:intergenic 20.0%
!!! TGTACATAACTAATGTATTT+TGG - chr8_4:11677935-11677954 None:intergenic 20.0%
!!! AATGTGAAAGATGATTTTAA+AGG - chr8_4:11678051-11678070 None:intergenic 20.0%
!!! AATCATCTTTCACATTTTTT+TGG + chr8_4:11678055-11678074 Msa1313600:CDS 20.0%
!!! ATCATCTTTCACATTTTTTT+GGG + chr8_4:11678056-11678075 Msa1313600:CDS 20.0%
!! AAGAAGAATGAGAAAATAAA+AGG - chr8_4:11678223-11678242 None:intergenic 20.0%
!!! AGATCTTTTAGATATTCTTT+TGG + chr8_4:11678392-11678411 Msa1313600:CDS 20.0%
!! GATTTTAAACTGAGAAAGAA+AGG + chr8_4:11677347-11677366 Msa1313600:CDS 25.0%
!!! GATGAAAAGTGTTTGAAAAA+GGG - chr8_4:11677425-11677444 None:intergenic 25.0%
!!! AGATGAAAAGTGTTTGAAAA+AGG - chr8_4:11677426-11677445 None:intergenic 25.0%
!!! TTTTTCAAACACTTTTCATC+TGG + chr8_4:11677425-11677444 Msa1313600:CDS 25.0%
! CATCAACAACAAGTTAATAT+TGG - chr8_4:11677699-11677718 None:intergenic 25.0%
! AAACATTCTTCATCTCATTA+AGG - chr8_4:11678028-11678047 None:intergenic 25.0%
! TCACTTTGTATACCTAATTT+AGG + chr8_4:11678284-11678303 Msa1313600:intron 25.0%
!! TACAATCTATTGTTGATGAA+AGG + chr8_4:11678331-11678350 Msa1313600:CDS 25.0%
!! GATTTTAAACTGAGAAAGAA+AGG + chr8_4:11677347-11677366 Msa1313600:CDS 25.0%
!!! GATGAAAAGTGTTTGAAAAA+GGG - chr8_4:11677425-11677444 None:intergenic 25.0%
!!! AGATGAAAAGTGTTTGAAAA+AGG - chr8_4:11677426-11677445 None:intergenic 25.0%
!!! TTTTTCAAACACTTTTCATC+TGG + chr8_4:11677425-11677444 Msa1313600:CDS 25.0%
! CATCAACAACAAGTTAATAT+TGG - chr8_4:11677699-11677718 None:intergenic 25.0%
! AAACATTCTTCATCTCATTA+AGG - chr8_4:11678028-11678047 None:intergenic 25.0%
! TCACTTTGTATACCTAATTT+AGG + chr8_4:11678284-11678303 Msa1313600:intron 25.0%
!! TACAATCTATTGTTGATGAA+AGG + chr8_4:11678331-11678350 Msa1313600:CDS 25.0%
! ATTTTGCTGACAAAATTGTG+AGG + chr8_4:11677303-11677322 Msa1313600:CDS 30.0%
TGTCATTGACAAATTCATCA+GGG - chr8_4:11677454-11677473 None:intergenic 30.0%
ATGTCATTGACAAATTCATC+AGG - chr8_4:11677455-11677474 None:intergenic 30.0%
ACGAAGAAAGTAAATAGCAA+AGG - chr8_4:11677562-11677581 None:intergenic 30.0%
TGTTGTTGATGTTTCAGATA+TGG + chr8_4:11677708-11677727 Msa1313600:intron 30.0%
!! ACATAGGTATTTTAAACGAC+TGG + chr8_4:11677890-11677909 Msa1313600:CDS 30.0%
TGGAGATTCATTTAACGTTA+TGG + chr8_4:11678109-11678128 Msa1313600:CDS 30.0%
! ATTCTCTTTTATGCCCATAA+AGG + chr8_4:11678142-11678161 Msa1313600:CDS 30.0%
TTTGGAAATAAACGACGAAA+AGG + chr8_4:11678410-11678429 Msa1313600:CDS 30.0%
TTGGAAATAAACGACGAAAA+GGG + chr8_4:11678411-11678430 Msa1313600:CDS 30.0%
! ATTTTGCTGACAAAATTGTG+AGG + chr8_4:11677303-11677322 Msa1313600:CDS 30.0%
TGTCATTGACAAATTCATCA+GGG - chr8_4:11677454-11677473 None:intergenic 30.0%
ATGTCATTGACAAATTCATC+AGG - chr8_4:11677455-11677474 None:intergenic 30.0%
ACGAAGAAAGTAAATAGCAA+AGG - chr8_4:11677562-11677581 None:intergenic 30.0%
TGTTGTTGATGTTTCAGATA+TGG + chr8_4:11677708-11677727 Msa1313600:intron 30.0%
!! ACATAGGTATTTTAAACGAC+TGG + chr8_4:11677890-11677909 Msa1313600:CDS 30.0%
TGGAGATTCATTTAACGTTA+TGG + chr8_4:11678109-11678128 Msa1313600:CDS 30.0%
! ATTCTCTTTTATGCCCATAA+AGG + chr8_4:11678142-11678161 Msa1313600:CDS 30.0%
TTTGGAAATAAACGACGAAA+AGG + chr8_4:11678410-11678429 Msa1313600:CDS 30.0%
TTGGAAATAAACGACGAAAA+GGG + chr8_4:11678411-11678430 Msa1313600:CDS 30.0%
!!! ATTTTTGTTGCCACTTTGCT+AGG + chr8_4:11677272-11677291 Msa1313600:CDS 35.0%
TTGTGAGGAATTTGAATGTG+TGG + chr8_4:11677318-11677337 Msa1313600:CDS 35.0%
CAAGTGTGTCTTGTACATAA+CGG - chr8_4:11677739-11677758 None:intergenic 35.0%
ATGTACAAGACACACTTGTA+TGG + chr8_4:11677741-11677760 Msa1313600:CDS 35.0%
!! ACTAGCTTAGTGATCGATTT+TGG - chr8_4:11677846-11677865 None:intergenic 35.0%
AATCGATCACTAAGCTAGTA+TGG + chr8_4:11677847-11677866 Msa1313600:CDS 35.0%
AATACCTATGTTCACCACTT+AGG - chr8_4:11677881-11677900 None:intergenic 35.0%
!!! AATGTATTTTGGCCAACGAT+AGG - chr8_4:11677924-11677943 None:intergenic 35.0%
TATGTACATACAACGCATTG+AGG + chr8_4:11677947-11677966 Msa1313600:CDS 35.0%
TCTCATTAAGGAACTCAACA+GGG - chr8_4:11678016-11678035 None:intergenic 35.0%
ATCTCATTAAGGAACTCAAC+AGG - chr8_4:11678017-11678036 None:intergenic 35.0%
CCAAATTTATTGACGATGAC+CGG - chr8_4:11678092-11678111 None:intergenic 35.0%
ACTTCTTACGTGCCTAAATT+AGG - chr8_4:11678299-11678318 None:intergenic 35.0%
AATTTAGGCACGTAAGAAGT+TGG + chr8_4:11678299-11678318 Msa1313600:intron 35.0%
CGAAAAGGGTGAAAAATTAG+AGG + chr8_4:11678425-11678444 Msa1313600:CDS 35.0%
! TTGGCTTTCTTCAAACAAAG+TGG - chr8_4:11678549-11678568 None:intergenic 35.0%
!!! ATTTTTGTTGCCACTTTGCT+AGG + chr8_4:11677272-11677291 Msa1313600:CDS 35.0%
TTGTGAGGAATTTGAATGTG+TGG + chr8_4:11677318-11677337 Msa1313600:CDS 35.0%
CAAGTGTGTCTTGTACATAA+CGG - chr8_4:11677739-11677758 None:intergenic 35.0%
ATGTACAAGACACACTTGTA+TGG + chr8_4:11677741-11677760 Msa1313600:CDS 35.0%
!! ACTAGCTTAGTGATCGATTT+TGG - chr8_4:11677846-11677865 None:intergenic 35.0%
AATCGATCACTAAGCTAGTA+TGG + chr8_4:11677847-11677866 Msa1313600:CDS 35.0%
AATACCTATGTTCACCACTT+AGG - chr8_4:11677881-11677900 None:intergenic 35.0%
!!! AATGTATTTTGGCCAACGAT+AGG - chr8_4:11677924-11677943 None:intergenic 35.0%
TATGTACATACAACGCATTG+AGG + chr8_4:11677947-11677966 Msa1313600:CDS 35.0%
TCTCATTAAGGAACTCAACA+GGG - chr8_4:11678016-11678035 None:intergenic 35.0%
ATCTCATTAAGGAACTCAAC+AGG - chr8_4:11678017-11678036 None:intergenic 35.0%
CCAAATTTATTGACGATGAC+CGG - chr8_4:11678092-11678111 None:intergenic 35.0%
ACTTCTTACGTGCCTAAATT+AGG - chr8_4:11678299-11678318 None:intergenic 35.0%
AATTTAGGCACGTAAGAAGT+TGG + chr8_4:11678299-11678318 Msa1313600:intron 35.0%
CGAAAAGGGTGAAAAATTAG+AGG + chr8_4:11678425-11678444 Msa1313600:CDS 35.0%
! TTGGCTTTCTTCAAACAAAG+TGG - chr8_4:11678549-11678568 None:intergenic 35.0%
ATTGTAGCATCCTAGCAAAG+TGG - chr8_4:11677285-11677304 None:intergenic 40.0%
ACATGGGATGGCCTATTATT+GGG + chr8_4:11677390-11677409 Msa1313600:CDS 40.0%
GACAGATGATGTGAACTTTG+AGG + chr8_4:11677812-11677831 Msa1313600:CDS 40.0%
! GATGATGTGAACTTTGAGGA+AGG + chr8_4:11677816-11677835 Msa1313600:CDS 40.0%
!! GTATGGACTAGATACCTAAG+TGG + chr8_4:11677864-11677883 Msa1313600:CDS 40.0%
GATACCTAAGTGGTGAACAT+AGG + chr8_4:11677874-11677893 Msa1313600:CDS 40.0%
!!! TTTTTTGGGATCTTGCGATC+CGG + chr8_4:11678070-11678089 Msa1313600:CDS 40.0%
CCGGTCATCGTCAATAAATT+TGG + chr8_4:11678089-11678108 Msa1313600:CDS 40.0%
TCATTTAACGTTATGGCTGC+TGG + chr8_4:11678116-11678135 Msa1313600:CDS 40.0%
! GCTTTGTTGAAAGCAAAACC+AGG - chr8_4:11678170-11678189 None:intergenic 40.0%
! TGCTTTCAACAAAGCACTCA+AGG + chr8_4:11678175-11678194 Msa1313600:CDS 40.0%
! TTCAACAAAGCACTCAAGGT+TGG + chr8_4:11678179-11678198 Msa1313600:intron 40.0%
!! AGGAAAGCGCTGCTAAAAAA+TGG + chr8_4:11678351-11678370 Msa1313600:CDS 40.0%
!! GGAAAGCGCTGCTAAAAAAT+GGG + chr8_4:11678352-11678371 Msa1313600:CDS 40.0%
CATTAGCAACTGCTATGATG+TGG + chr8_4:11678499-11678518 Msa1313600:CDS 40.0%
ATTGTAGCATCCTAGCAAAG+TGG - chr8_4:11677285-11677304 None:intergenic 40.0%
ACATGGGATGGCCTATTATT+GGG + chr8_4:11677390-11677409 Msa1313600:CDS 40.0%
GACAGATGATGTGAACTTTG+AGG + chr8_4:11677812-11677831 Msa1313600:CDS 40.0%
! GATGATGTGAACTTTGAGGA+AGG + chr8_4:11677816-11677835 Msa1313600:CDS 40.0%
!! GTATGGACTAGATACCTAAG+TGG + chr8_4:11677864-11677883 Msa1313600:CDS 40.0%
GATACCTAAGTGGTGAACAT+AGG + chr8_4:11677874-11677893 Msa1313600:CDS 40.0%
!!! TTTTTTGGGATCTTGCGATC+CGG + chr8_4:11678070-11678089 Msa1313600:CDS 40.0%
CCGGTCATCGTCAATAAATT+TGG + chr8_4:11678089-11678108 Msa1313600:CDS 40.0%
TCATTTAACGTTATGGCTGC+TGG + chr8_4:11678116-11678135 Msa1313600:CDS 40.0%
! GCTTTGTTGAAAGCAAAACC+AGG - chr8_4:11678170-11678189 None:intergenic 40.0%
! TGCTTTCAACAAAGCACTCA+AGG + chr8_4:11678175-11678194 Msa1313600:CDS 40.0%
! TTCAACAAAGCACTCAAGGT+TGG + chr8_4:11678179-11678198 Msa1313600:intron 40.0%
!! AGGAAAGCGCTGCTAAAAAA+TGG + chr8_4:11678351-11678370 Msa1313600:CDS 40.0%
!! GGAAAGCGCTGCTAAAAAAT+GGG + chr8_4:11678352-11678371 Msa1313600:CDS 40.0%
CATTAGCAACTGCTATGATG+TGG + chr8_4:11678499-11678518 Msa1313600:CDS 40.0%
GACATGGGATGGCCTATTAT+TGG + chr8_4:11677389-11677408 Msa1313600:CDS 45.0%
GGCCTATTATTGGGAACATG+TGG + chr8_4:11677399-11677418 Msa1313600:CDS 45.0%
GGCCACATGTTCCCAATAAT+AGG - chr8_4:11677404-11677423 None:intergenic 45.0%
GCAGAAGTGACTATGATGCT+TGG - chr8_4:11677771-11677790 None:intergenic 45.0%
TTCTGCTGCTATGTGCAAGA+AGG + chr8_4:11677785-11677804 Msa1313600:CDS 45.0%
!! TTTATGCCCATAAAGGCACC+TGG + chr8_4:11678149-11678168 Msa1313600:CDS 45.0%
GCAAAACCAGGTGCCTTTAT+GGG - chr8_4:11678158-11678177 None:intergenic 45.0%
AGCAAAACCAGGTGCCTTTA+TGG - chr8_4:11678159-11678178 None:intergenic 45.0%
! CTGATAGCGCTATTGCTTAG+TGG + chr8_4:11678468-11678487 Msa1313600:CDS 45.0%
GACATGGGATGGCCTATTAT+TGG + chr8_4:11677389-11677408 Msa1313600:CDS 45.0%
GGCCTATTATTGGGAACATG+TGG + chr8_4:11677399-11677418 Msa1313600:CDS 45.0%
GGCCACATGTTCCCAATAAT+AGG - chr8_4:11677404-11677423 None:intergenic 45.0%
GCAGAAGTGACTATGATGCT+TGG - chr8_4:11677771-11677790 None:intergenic 45.0%
TTCTGCTGCTATGTGCAAGA+AGG + chr8_4:11677785-11677804 Msa1313600:CDS 45.0%
!! TTTATGCCCATAAAGGCACC+TGG + chr8_4:11678149-11678168 Msa1313600:CDS 45.0%
GCAAAACCAGGTGCCTTTAT+GGG - chr8_4:11678158-11678177 None:intergenic 45.0%
AGCAAAACCAGGTGCCTTTA+TGG - chr8_4:11678159-11678178 None:intergenic 45.0%
! CTGATAGCGCTATTGCTTAG+TGG + chr8_4:11678468-11678487 Msa1313600:CDS 45.0%
AAAGGACATCCACTACCTCC+TGG + chr8_4:11677365-11677384 Msa1313600:CDS 50.0%
CTGGTCACTTCTCCTATCGT+TGG + chr8_4:11677909-11677928 Msa1313600:CDS 50.0%
AAAGGACATCCACTACCTCC+TGG + chr8_4:11677365-11677384 Msa1313600:CDS 50.0%
CTGGTCACTTCTCCTATCGT+TGG + chr8_4:11677909-11677928 Msa1313600:CDS 50.0%
TCCACTACCTCCTGGTGACA+TGG + chr8_4:11677373-11677392 Msa1313600:CDS 55.0%
CCACTACCTCCTGGTGACAT+GGG + chr8_4:11677374-11677393 Msa1313600:CDS 55.0%
TACCTCCTGGTGACATGGGA+TGG + chr8_4:11677378-11677397 Msa1313600:CDS 55.0%
ATAGGCCATCCCATGTCACC+AGG - chr8_4:11677386-11677405 None:intergenic 55.0%
TCCACTACCTCCTGGTGACA+TGG + chr8_4:11677373-11677392 Msa1313600:CDS 55.0%
CCACTACCTCCTGGTGACAT+GGG + chr8_4:11677374-11677393 Msa1313600:CDS 55.0%
TACCTCCTGGTGACATGGGA+TGG + chr8_4:11677378-11677397 Msa1313600:CDS 55.0%
ATAGGCCATCCCATGTCACC+AGG - chr8_4:11677386-11677405 None:intergenic 55.0%
CCCATGTCACCAGGAGGTAG+TGG - chr8_4:11677377-11677396 None:intergenic 60.0%
CCCATGTCACCAGGAGGTAG+TGG - chr8_4:11677377-11677396 None:intergenic 60.0%
GGCCATCCCATGTCACCAGG+AGG - chr8_4:11677383-11677402 None:intergenic 65.0%
GGCCATCCCATGTCACCAGG+AGG - chr8_4:11677383-11677402 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 11677251 11678569 11677251 ID=Msa1313600;Name=Msa1313600
chr8_4 mRNA 11677251 11678569 11677251 ID=Msa1313600-mRNA-1;Parent=Msa1313600;Name=Msa1313600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.33|1|1|1|3|0|323
chr8_4 exon 11677251 11677483 11677251 ID=Msa1313600-mRNA-1:exon:4405;Parent=Msa1313600-mRNA-1
chr8_4 exon 11677725 11678196 11677725 ID=Msa1313600-mRNA-1:exon:4406;Parent=Msa1313600-mRNA-1
chr8_4 exon 11678306 11678569 11678306 ID=Msa1313600-mRNA-1:exon:4407;Parent=Msa1313600-mRNA-1
chr8_4 CDS 11677251 11677483 11677251 ID=Msa1313600-mRNA-1:cds;Parent=Msa1313600-mRNA-1
chr8_4 CDS 11677725 11678196 11677725 ID=Msa1313600-mRNA-1:cds;Parent=Msa1313600-mRNA-1
chr8_4 CDS 11678306 11678569 11678306 ID=Msa1313600-mRNA-1:cds;Parent=Msa1313600-mRNA-1
Gene Sequence

>Msa1313600

ATGGAAATACATTGGATTTGGATTTTTGTTGCCACTTTGCTAGGATGCTACAATTTTGCTGACAAAATTGTGAGGAATTTGAATGTGTGGTATTATGATTTTAAACTGAGAAAGAAAGGACATCCACTACCTCCTGGTGACATGGGATGGCCTATTATTGGGAACATGTGGCCCTTTTTCAAACACTTTTCATCTGGTCACCCTGATGAATTTGTCAATGACATTGTTCTTAAATATGGACAAACCGTTATGTACAAGACACACTTGTATGGATTTCCAAGCATCATAGTCACTTCTGCTGCTATGTGCAAGAAGGTTATGACAGATGATGTGAACTTTGAGGAAGGTTATCCAAAATCGATCACTAAGCTAGTATGGACTAGATACCTAAGTGGTGAACATAGGTATTTTAAACGACTGGTCACTTCTCCTATCGTTGGCCAAAATACATTAGTTATGTACATACAACGCATTGAGGATATTATAATCGATAAGCTCGAAGAATTGTCTAGCATGAAACACCCTGTTGAGTTCCTTAATGAGATGAAGAATGTTTCCTTTAAAATCATCTTTCACATTTTTTTGGGATCTTGCGATCCGGTCATCGTCAATAAATTTGGAGATTCATTTAACGTTATGGCTGCTGGTATATTCTCTTTTATGCCCATAAAGGCACCTGGTTTTGCTTTCAACAAAGCACTCAAGGCACGTAAGAAGTTGGTCAAAATATTACAATCTATTGTTGATGAAAGGAAAGCGCTGCTAAAAAATGGGCAAATCGAAGAAAAGAAAGATCTTTTAGATATTCTTTTGGAAATAAACGACGAAAAGGGTGAAAAATTAGAGGTTGATGACATTATTGACTTTCTGATAGCGCTATTGCTTAGTGGTCATGAAACATTAGCAACTGCTATGATGTGGTTAATTACATATCTTACAGAACATCCACTTTGTTTGAAGAAAGCCAAG

Protein sequence

>Msa1313600

MEIHWIWIFVATLLGCYNFADKIVRNLNVWYYDFKLRKKGHPLPPGDMGWPIIGNMWPFFKHFSSGHPDEFVNDIVLKYGQTVMYKTHLYGFPSIIVTSAAMCKKVMTDDVNFEEGYPKSITKLVWTRYLSGEHRYFKRLVTSPIVGQNTLVMYIQRIEDIIIDKLEELSSMKHPVEFLNEMKNVSFKIIFHIFLGSCDPVIVNKFGDSFNVMAAGIFSFMPIKAPGFAFNKALKARKKLVKILQSIVDERKALLKNGQIEEKKDLLDILLEINDEKGEKLEVDDIIDFLIALLLSGHETLATAMMWLITYLTEHPLCLKKAK