Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313600 | BAG68925.1 | 63.385 | 325 | 117 | 1 | 1 | 323 | 1 | 325 | 1.30e-148 | 437 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313600 | sp|B5BSX1|BAMO_GLYUR | 60.182 | 329 | 124 | 3 | 1 | 323 | 1 | 328 | 1.09e-143 | 417 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313600 | B5BSW7 | 63.385 | 325 | 117 | 1 | 1 | 323 | 1 | 325 | 6.20e-149 | 437 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1233060 | Msa1313600 | 0.874332 | 7.335833e-68 | -8.615850e-47 |
Msa1233070 | Msa1313600 | 0.842859 | 1.999181e-58 | -8.615850e-47 |
Msa1275400 | Msa1313600 | 0.883686 | 3.637017e-71 | -8.615850e-47 |
Msa1275410 | Msa1313600 | 0.801517 | 8.675176e-49 | -8.615850e-47 |
Msa1313600 | Msa1313610 | 0.861579 | 9.292797e-64 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313600 | MtrunA17_Chr8g0339861 | 62.769 | 325 | 119 | 1 | 1 | 323 | 1 | 325 | 8.12e-151 | 432 |
Msa1313600 | MtrunA17_Chr4g0000171 | 60.991 | 323 | 126 | 0 | 1 | 323 | 1 | 323 | 9.77e-151 | 426 |
Msa1313600 | MtrunA17_Chr4g0013471 | 59.752 | 323 | 130 | 0 | 1 | 323 | 1 | 323 | 1.55e-146 | 418 |
Msa1313600 | MtrunA17_Chr4g0000161 | 59.752 | 323 | 130 | 0 | 1 | 323 | 1 | 323 | 9.52e-146 | 414 |
Msa1313600 | MtrunA17_Chr8g0381551 | 55.488 | 328 | 140 | 3 | 1 | 323 | 1 | 327 | 1.15e-134 | 385 |
Msa1313600 | MtrunA17_Chr8g0381541 | 55.488 | 328 | 140 | 3 | 1 | 323 | 1 | 327 | 1.44e-132 | 386 |
Msa1313600 | MtrunA17_Chr8g0381571 | 55.488 | 328 | 140 | 3 | 1 | 323 | 1 | 327 | 1.56e-132 | 385 |
Msa1313600 | MtrunA17_Chr1g0161671 | 53.354 | 328 | 132 | 6 | 1 | 323 | 1 | 312 | 6.20e-110 | 322 |
Msa1313600 | MtrunA17_Chr5g0400421 | 46.462 | 325 | 165 | 6 | 4 | 323 | 8 | 328 | 8.97e-85 | 263 |
Msa1313600 | MtrunA17_Chr1g0161651 | 45.652 | 322 | 128 | 6 | 1 | 278 | 1 | 319 | 1.34e-84 | 258 |
Msa1313600 | MtrunA17_Chr2g0293421 | 40.367 | 327 | 189 | 3 | 1 | 323 | 3 | 327 | 1.36e-83 | 261 |
Msa1313600 | MtrunA17_Chr2g0293411 | 40.123 | 324 | 186 | 4 | 6 | 323 | 4 | 325 | 1.84e-81 | 255 |
Msa1313600 | MtrunA17_Chr5g0400411 | 41.768 | 328 | 175 | 8 | 4 | 323 | 8 | 327 | 4.78e-68 | 220 |
Msa1313600 | MtrunA17_Chr1g0161691 | 46.715 | 137 | 68 | 2 | 102 | 234 | 1 | 136 | 1.72e-37 | 130 |
Msa1313600 | MtrunA17_Chr3g0089361 | 28.659 | 328 | 212 | 8 | 3 | 323 | 6 | 318 | 8.43e-35 | 132 |
Msa1313600 | MtrunA17_Chr4g0044851 | 30.420 | 286 | 181 | 8 | 43 | 323 | 37 | 309 | 2.43e-34 | 130 |
Msa1313600 | MtrunA17_Chr8g0388921 | 29.655 | 290 | 198 | 4 | 31 | 316 | 22 | 309 | 7.44e-31 | 121 |
Msa1313600 | MtrunA17_Chr1g0153371 | 29.352 | 293 | 193 | 6 | 35 | 323 | 27 | 309 | 1.14e-30 | 120 |
Msa1313600 | MtrunA17_Chr5g0408181 | 28.041 | 296 | 184 | 11 | 27 | 315 | 19 | 292 | 6.49e-28 | 112 |
Msa1313600 | MtrunA17_Chr6g0455461 | 27.667 | 300 | 187 | 10 | 33 | 323 | 25 | 303 | 1.52e-27 | 111 |
Msa1313600 | MtrunA17_Chr3g0078411 | 27.667 | 300 | 187 | 10 | 33 | 323 | 25 | 303 | 6.64e-27 | 110 |
Msa1313600 | MtrunA17_Chr8g0373441 | 28.188 | 298 | 194 | 11 | 35 | 323 | 25 | 311 | 1.10e-26 | 108 |
Msa1313600 | MtrunA17_Chr7g0219961 | 26.073 | 303 | 187 | 11 | 33 | 323 | 25 | 302 | 2.90e-26 | 108 |
Msa1313600 | MtrunA17_Chr4g0044841 | 27.891 | 294 | 195 | 7 | 35 | 323 | 29 | 310 | 6.90e-26 | 107 |
Msa1313600 | MtrunA17_Chr8g0369791 | 25.926 | 324 | 211 | 10 | 1 | 320 | 1 | 299 | 7.74e-26 | 107 |
Msa1313600 | MtrunA17_Chr3g0113321 | 28.333 | 300 | 187 | 11 | 35 | 323 | 21 | 303 | 2.27e-25 | 105 |
Msa1313600 | MtrunA17_Chr5g0443401 | 26.582 | 316 | 217 | 9 | 13 | 321 | 8 | 315 | 1.08e-24 | 103 |
Msa1313600 | MtrunA17_Chr5g0397971 | 25.914 | 301 | 201 | 9 | 30 | 321 | 18 | 305 | 1.41e-24 | 103 |
Msa1313600 | MtrunA17_Chr8g0341951 | 25.455 | 330 | 217 | 12 | 1 | 321 | 1 | 310 | 2.51e-24 | 102 |
Msa1313600 | MtrunA17_Chr7g0226771 | 26.298 | 289 | 198 | 8 | 41 | 323 | 31 | 310 | 2.91e-24 | 102 |
Msa1313600 | MtrunA17_Chr6g0478161 | 26.224 | 286 | 191 | 10 | 43 | 321 | 50 | 322 | 2.31e-22 | 97.4 |
Msa1313600 | MtrunA17_Chr5g0403931 | 26.855 | 283 | 187 | 11 | 43 | 316 | 36 | 307 | 2.39e-22 | 97.1 |
Msa1313600 | MtrunA17_Chr5g0443731 | 24.028 | 283 | 208 | 4 | 38 | 316 | 24 | 303 | 3.80e-22 | 96.7 |
Msa1313600 | MtrunA17_Chr1g0164371 | 25.267 | 281 | 191 | 8 | 37 | 312 | 38 | 304 | 3.89e-21 | 93.6 |
Msa1313600 | MtrunA17_Chr3g0089291 | 26.337 | 243 | 167 | 5 | 84 | 322 | 1 | 235 | 4.54e-21 | 90.1 |
Msa1313600 | MtrunA17_Chr8g0380471 | 27.972 | 286 | 197 | 6 | 35 | 316 | 28 | 308 | 1.40e-20 | 92.0 |
Msa1313600 | MtrunA17_Chr8g0372411 | 27.241 | 290 | 185 | 11 | 44 | 321 | 40 | 315 | 1.69e-20 | 91.7 |
Msa1313600 | MtrunA17_Chr3g0089351 | 26.033 | 242 | 171 | 4 | 84 | 323 | 1 | 236 | 1.89e-20 | 90.9 |
Msa1313600 | MtrunA17_Chr3g0107511 | 26.978 | 278 | 191 | 7 | 43 | 314 | 33 | 304 | 1.10e-19 | 89.4 |
Msa1313600 | MtrunA17_Chr3g0107501 | 25.795 | 283 | 186 | 8 | 43 | 313 | 33 | 303 | 2.64e-19 | 88.2 |
Msa1313600 | MtrunA17_Chr8g0372711 | 23.381 | 278 | 197 | 9 | 45 | 315 | 48 | 316 | 2.68e-19 | 88.2 |
Msa1313600 | MtrunA17_Chr3g0089381 | 29.286 | 140 | 95 | 2 | 184 | 323 | 2 | 137 | 2.14e-15 | 73.9 |
Msa1313600 | MtrunA17_Chr5g0436991 | 36.111 | 108 | 62 | 3 | 216 | 323 | 55 | 155 | 2.45e-13 | 67.0 |
Msa1313600 | MtrunA17_Chr3g0089371 | 45.238 | 84 | 44 | 2 | 34 | 115 | 31 | 114 | 1.18e-12 | 66.2 |
Msa1313600 | MtrunA17_Chr8g0380931 | 22.222 | 297 | 184 | 11 | 43 | 316 | 62 | 334 | 1.95e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313600 | AT2G32440.2 | 40.000 | 305 | 177 | 3 | 23 | 323 | 24 | 326 | 6.79e-81 | 254 |
Msa1313600 | AT2G32440.1 | 40.000 | 305 | 177 | 3 | 23 | 323 | 24 | 326 | 6.79e-81 | 254 |
Msa1313600 | AT1G05160.2 | 39.198 | 324 | 189 | 5 | 5 | 323 | 7 | 327 | 1.53e-79 | 250 |
Msa1313600 | AT1G05160.1 | 39.198 | 324 | 189 | 5 | 5 | 323 | 7 | 327 | 1.53e-79 | 250 |
Msa1313600 | AT5G36110.2 | 32.143 | 280 | 178 | 6 | 43 | 316 | 34 | 307 | 2.65e-37 | 137 |
Msa1313600 | AT5G36110.1 | 31.579 | 285 | 183 | 6 | 43 | 321 | 34 | 312 | 2.42e-36 | 136 |
Msa1313600 | AT5G36140.1 | 31.295 | 278 | 180 | 6 | 43 | 316 | 33 | 303 | 1.44e-35 | 131 |
Msa1313600 | AT3G19270.1 | 28.671 | 286 | 185 | 9 | 43 | 323 | 34 | 305 | 2.72e-28 | 114 |
Msa1313600 | AT3G19270.2 | 28.671 | 286 | 185 | 9 | 43 | 323 | 34 | 305 | 3.60e-28 | 114 |
Msa1313600 | AT1G73340.1 | 26.962 | 293 | 193 | 10 | 37 | 321 | 37 | 316 | 5.79e-26 | 107 |
Msa1313600 | AT4G19230.1 | 27.622 | 286 | 179 | 12 | 42 | 320 | 35 | 299 | 2.44e-25 | 105 |
Msa1313600 | AT4G19230.2 | 27.622 | 286 | 179 | 12 | 42 | 320 | 35 | 299 | 2.88e-25 | 105 |
Msa1313600 | AT4G36380.2 | 27.018 | 285 | 196 | 8 | 43 | 321 | 69 | 347 | 3.88e-25 | 105 |
Msa1313600 | AT4G36380.1 | 27.018 | 285 | 196 | 8 | 43 | 321 | 69 | 347 | 8.09e-25 | 105 |
Msa1313600 | AT2G29090.4 | 28.070 | 285 | 185 | 10 | 43 | 321 | 49 | 319 | 1.75e-24 | 102 |
Msa1313600 | AT1G12740.3 | 27.907 | 301 | 195 | 10 | 30 | 321 | 18 | 305 | 3.73e-24 | 101 |
Msa1313600 | AT2G29090.2 | 28.070 | 285 | 185 | 10 | 43 | 321 | 49 | 319 | 5.71e-24 | 102 |
Msa1313600 | AT2G29090.1 | 28.070 | 285 | 185 | 10 | 43 | 321 | 49 | 319 | 5.71e-24 | 102 |
Msa1313600 | AT3G13730.2 | 25.784 | 287 | 199 | 7 | 40 | 319 | 48 | 327 | 1.05e-23 | 101 |
Msa1313600 | AT3G13730.1 | 25.784 | 287 | 199 | 7 | 40 | 319 | 48 | 327 | 1.10e-23 | 101 |
Msa1313600 | AT1G12740.1 | 27.907 | 301 | 195 | 10 | 30 | 321 | 18 | 305 | 1.11e-23 | 101 |
Msa1313600 | AT1G12740.4 | 27.907 | 301 | 195 | 10 | 30 | 321 | 18 | 305 | 1.17e-23 | 101 |
Msa1313600 | AT5G45340.2 | 26.408 | 284 | 185 | 11 | 42 | 320 | 35 | 299 | 7.67e-23 | 98.6 |
Msa1313600 | AT5G45340.1 | 26.408 | 284 | 185 | 11 | 42 | 320 | 35 | 299 | 1.14e-22 | 98.2 |
Msa1313600 | AT5G05690.2 | 28.814 | 295 | 176 | 12 | 43 | 323 | 31 | 305 | 1.45e-22 | 97.4 |
Msa1313600 | AT5G38970.3 | 22.973 | 296 | 204 | 8 | 35 | 323 | 26 | 304 | 2.27e-22 | 97.1 |
Msa1313600 | AT5G05690.1 | 28.814 | 295 | 176 | 12 | 43 | 323 | 31 | 305 | 2.30e-22 | 97.4 |
Msa1313600 | AT5G38970.1 | 22.973 | 296 | 204 | 8 | 35 | 323 | 26 | 304 | 3.16e-22 | 97.1 |
Msa1313600 | AT1G12740.2 | 27.362 | 307 | 195 | 12 | 30 | 321 | 18 | 311 | 1.16e-21 | 95.5 |
Msa1313600 | AT1G19630.2 | 23.611 | 288 | 208 | 9 | 34 | 315 | 25 | 306 | 2.62e-21 | 94.4 |
Msa1313600 | AT1G19630.3 | 23.264 | 288 | 209 | 9 | 34 | 315 | 25 | 306 | 2.84e-21 | 94.4 |
Msa1313600 | AT1G19630.1 | 23.264 | 288 | 209 | 9 | 34 | 315 | 25 | 306 | 2.98e-21 | 94.4 |
Msa1313600 | AT3G30180.1 | 26.351 | 296 | 196 | 11 | 33 | 323 | 26 | 304 | 3.59e-21 | 94.0 |
Msa1313600 | AT1G65670.1 | 25.490 | 306 | 203 | 8 | 23 | 321 | 15 | 302 | 7.58e-20 | 90.1 |
Msa1313600 | AT4G15300.3 | 25.850 | 294 | 197 | 8 | 30 | 316 | 12 | 291 | 3.14e-19 | 88.6 |
Msa1313600 | AT4G15300.2 | 25.850 | 294 | 197 | 8 | 30 | 316 | 22 | 301 | 3.31e-19 | 88.2 |
Msa1313600 | AT3G50660.2 | 24.688 | 320 | 194 | 14 | 37 | 323 | 33 | 338 | 7.98e-19 | 87.0 |
Msa1313600 | AT3G50660.1 | 24.688 | 320 | 194 | 14 | 37 | 323 | 33 | 338 | 1.18e-18 | 87.0 |
Msa1313600 | AT1G55940.2 | 21.698 | 318 | 218 | 11 | 23 | 323 | 25 | 328 | 5.58e-16 | 79.0 |
Msa1313600 | AT1G55940.1 | 21.519 | 316 | 221 | 10 | 23 | 323 | 25 | 328 | 5.71e-16 | 78.6 |
Msa1313600 | AT4G15396.4 | 21.843 | 293 | 215 | 6 | 32 | 321 | 24 | 305 | 1.33e-15 | 77.4 |
Msa1313600 | AT4G15396.1 | 21.843 | 293 | 215 | 6 | 32 | 321 | 24 | 305 | 1.42e-15 | 77.4 |
Msa1313600 | AT4G15396.2 | 21.843 | 293 | 215 | 6 | 32 | 321 | 24 | 305 | 1.81e-15 | 77.0 |
Msa1313600 | AT4G15396.3 | 21.843 | 293 | 215 | 6 | 32 | 321 | 24 | 305 | 1.99e-15 | 77.0 |
Msa1313600 | AT1G78490.2 | 21.824 | 307 | 225 | 7 | 23 | 323 | 15 | 312 | 2.09e-15 | 77.0 |
Msa1313600 | AT1G78490.1 | 21.824 | 307 | 225 | 7 | 23 | 323 | 15 | 312 | 2.35e-15 | 77.0 |
Msa1313600 | AT4G15300.1 | 23.885 | 314 | 200 | 9 | 30 | 316 | 12 | 313 | 4.08e-14 | 73.2 |
Msa1313600 | AT2G42850.2 | 25.436 | 287 | 190 | 12 | 43 | 318 | 45 | 318 | 5.62e-14 | 72.4 |
Msa1313600 | AT2G29090.3 | 26.293 | 232 | 157 | 8 | 96 | 321 | 1 | 224 | 1.02e-13 | 71.6 |
Msa1313600 | AT2G42850.1 | 25.436 | 287 | 190 | 12 | 43 | 318 | 45 | 318 | 1.34e-13 | 71.6 |
Msa1313600 | AT4G15393.1 | 20.795 | 327 | 232 | 8 | 1 | 323 | 2 | 305 | 5.06e-13 | 69.7 |
Msa1313600 | AT4G15393.2 | 20.795 | 327 | 232 | 8 | 1 | 323 | 2 | 305 | 5.17e-13 | 69.7 |
Msa1313600 | AT3G44970.2 | 22.654 | 309 | 220 | 7 | 23 | 323 | 15 | 312 | 7.28e-12 | 65.9 |
Msa1313600 | AT3G44970.1 | 22.654 | 309 | 220 | 7 | 23 | 323 | 15 | 312 | 9.19e-12 | 66.2 |
Msa1313600 | AT2G45560.1 | 23.457 | 324 | 198 | 15 | 35 | 323 | 30 | 338 | 1.80e-11 | 65.1 |
Msa1313600 | AT3G53280.1 | 23.948 | 309 | 193 | 12 | 43 | 321 | 28 | 324 | 2.97e-11 | 64.7 |
Msa1313600 | AT2G45550.1 | 22.468 | 316 | 203 | 11 | 39 | 323 | 34 | 338 | 5.06e-11 | 63.9 |
Msa1313600 | AT3G26170.1 | 23.416 | 363 | 206 | 15 | 1 | 323 | 1 | 331 | 9.27e-11 | 63.2 |
Find 51 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTAGCTTAGTGATCGATTT+TGG | 0.175863 | 8_4:-11677843 | None:intergenic |
TGTACATAACTAATGTATTT+TGG | 0.219074 | 8_4:-11677932 | None:intergenic |
AGCAAAACCAGGTGCCTTTA+TGG | 0.221809 | 8_4:-11678156 | None:intergenic |
AAATGGAAATACATTGGATT+TGG | 0.256548 | 8_4:+11677249 | None:intergenic |
GACATGGGATGGCCTATTAT+TGG | 0.274318 | 8_4:+11677389 | Msa1313600:CDS |
AGATGAAAAGTGTTTGAAAA+AGG | 0.282931 | 8_4:-11677423 | None:intergenic |
AAACATTCTTCATCTCATTA+AGG | 0.297114 | 8_4:-11678025 | None:intergenic |
CCGGTCATCGTCAATAAATT+TGG | 0.306182 | 8_4:+11678089 | Msa1313600:CDS |
TGGAGATTCATTTAACGTTA+TGG | 0.314929 | 8_4:+11678109 | Msa1313600:CDS |
AATCGATCACTAAGCTAGTA+TGG | 0.334069 | 8_4:+11677847 | Msa1313600:CDS |
ATCTCATTAAGGAACTCAAC+AGG | 0.376829 | 8_4:-11678014 | None:intergenic |
CTGATAGCGCTATTGCTTAG+TGG | 0.378215 | 8_4:+11678468 | Msa1313600:CDS |
GCAAAACCAGGTGCCTTTAT+GGG | 0.400526 | 8_4:-11678155 | None:intergenic |
ACATGGGATGGCCTATTATT+GGG | 0.401969 | 8_4:+11677390 | Msa1313600:CDS |
ATGTCATTGACAAATTCATC+AGG | 0.411182 | 8_4:-11677452 | None:intergenic |
GGCCACATGTTCCCAATAAT+AGG | 0.413146 | 8_4:-11677401 | None:intergenic |
TCATTTAACGTTATGGCTGC+TGG | 0.422801 | 8_4:+11678116 | Msa1313600:CDS |
TTTGGAAATAAACGACGAAA+AGG | 0.428658 | 8_4:+11678410 | Msa1313600:CDS |
ATGTACAAGACACACTTGTA+TGG | 0.428727 | 8_4:+11677741 | Msa1313600:CDS |
CCCATGTCACCAGGAGGTAG+TGG | 0.466764 | 8_4:-11677374 | None:intergenic |
CCAAATTTATTGACGATGAC+CGG | 0.477081 | 8_4:-11678089 | None:intergenic |
AATACCTATGTTCACCACTT+AGG | 0.479455 | 8_4:-11677878 | None:intergenic |
TCCACTACCTCCTGGTGACA+TGG | 0.483202 | 8_4:+11677373 | Msa1313600:CDS |
TACCTCCTGGTGACATGGGA+TGG | 0.489770 | 8_4:+11677378 | Msa1313600:CDS |
TACAATCTATTGTTGATGAA+AGG | 0.498853 | 8_4:+11678331 | Msa1313600:CDS |
TGCTTTCAACAAAGCACTCA+AGG | 0.500116 | 8_4:+11678175 | Msa1313600:CDS |
AATTTAGGCACGTAAGAAGT+TGG | 0.501299 | 8_4:+11678299 | Msa1313600:intron |
GACAGATGATGTGAACTTTG+AGG | 0.520859 | 8_4:+11677812 | Msa1313600:CDS |
TTGGAAATAAACGACGAAAA+GGG | 0.523297 | 8_4:+11678411 | Msa1313600:CDS |
GCAGAAGTGACTATGATGCT+TGG | 0.539245 | 8_4:-11677768 | None:intergenic |
TTGGCTTTCTTCAAACAAAG+TGG | 0.553244 | 8_4:-11678546 | None:intergenic |
CAAGTGTGTCTTGTACATAA+CGG | 0.560883 | 8_4:-11677736 | None:intergenic |
ATAGGCCATCCCATGTCACC+AGG | 0.570615 | 8_4:-11677383 | None:intergenic |
TTTATGCCCATAAAGGCACC+TGG | 0.571604 | 8_4:+11678149 | Msa1313600:CDS |
TTCTGCTGCTATGTGCAAGA+AGG | 0.579434 | 8_4:+11677785 | Msa1313600:CDS |
GATACCTAAGTGGTGAACAT+AGG | 0.581047 | 8_4:+11677874 | Msa1313600:CDS |
CCACTACCTCCTGGTGACAT+GGG | 0.587904 | 8_4:+11677374 | Msa1313600:CDS |
GGCCTATTATTGGGAACATG+TGG | 0.591942 | 8_4:+11677399 | Msa1313600:CDS |
CTGGTCACTTCTCCTATCGT+TGG | 0.592260 | 8_4:+11677909 | Msa1313600:CDS |
TTGTGAGGAATTTGAATGTG+TGG | 0.606895 | 8_4:+11677318 | Msa1313600:CDS |
GATGATGTGAACTTTGAGGA+AGG | 0.613821 | 8_4:+11677816 | Msa1313600:CDS |
AAAGGACATCCACTACCTCC+TGG | 0.616462 | 8_4:+11677365 | Msa1313600:CDS |
GCTTTGTTGAAAGCAAAACC+AGG | 0.621354 | 8_4:-11678167 | None:intergenic |
ATTGTAGCATCCTAGCAAAG+TGG | 0.639328 | 8_4:-11677282 | None:intergenic |
CATTAGCAACTGCTATGATG+TGG | 0.640407 | 8_4:+11678499 | Msa1313600:CDS |
TCTCATTAAGGAACTCAACA+GGG | 0.659553 | 8_4:-11678013 | None:intergenic |
TGTCATTGACAAATTCATCA+GGG | 0.660537 | 8_4:-11677451 | None:intergenic |
ACTTTGTTTGAAGAAAGCCA+AGG | 0.670445 | 8_4:+11678548 | Msa1313600:CDS |
TATGTACATACAACGCATTG+AGG | 0.680590 | 8_4:+11677947 | Msa1313600:CDS |
GTATGGACTAGATACCTAAG+TGG | 0.682431 | 8_4:+11677864 | Msa1313600:CDS |
GGCCATCCCATGTCACCAGG+AGG | 0.688276 | 8_4:-11677380 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGATTAAAGAAAAAGAAAA+AGG | - | chr8_4:11677515-11677534 | None:intergenic | 15.0% |
!!! | AATCTTTTTTCTATAATAGT+TGG | + | chr8_4:11677529-11677548 | Msa1313600:intron | 15.0% |
!! | AAGATTAAAGAAAAAGAAAA+AGG | - | chr8_4:11677515-11677534 | None:intergenic | 15.0% |
!!! | AATCTTTTTTCTATAATAGT+TGG | + | chr8_4:11677529-11677548 | Msa1313600:intron | 15.0% |
!! | AAAGAAAAAGGAAAAAAGTA+GGG | - | chr8_4:11677503-11677522 | None:intergenic | 20.0% |
!! | AAAAGAAAAAGGAAAAAAGT+AGG | - | chr8_4:11677504-11677523 | None:intergenic | 20.0% |
!!! | TGTACATAACTAATGTATTT+TGG | - | chr8_4:11677935-11677954 | None:intergenic | 20.0% |
!!! | AATGTGAAAGATGATTTTAA+AGG | - | chr8_4:11678051-11678070 | None:intergenic | 20.0% |
!!! | AATCATCTTTCACATTTTTT+TGG | + | chr8_4:11678055-11678074 | Msa1313600:CDS | 20.0% |
!!! | ATCATCTTTCACATTTTTTT+GGG | + | chr8_4:11678056-11678075 | Msa1313600:CDS | 20.0% |
!! | AAGAAGAATGAGAAAATAAA+AGG | - | chr8_4:11678223-11678242 | None:intergenic | 20.0% |
!!! | AGATCTTTTAGATATTCTTT+TGG | + | chr8_4:11678392-11678411 | Msa1313600:CDS | 20.0% |
!! | AAAGAAAAAGGAAAAAAGTA+GGG | - | chr8_4:11677503-11677522 | None:intergenic | 20.0% |
!! | AAAAGAAAAAGGAAAAAAGT+AGG | - | chr8_4:11677504-11677523 | None:intergenic | 20.0% |
!!! | TGTACATAACTAATGTATTT+TGG | - | chr8_4:11677935-11677954 | None:intergenic | 20.0% |
!!! | AATGTGAAAGATGATTTTAA+AGG | - | chr8_4:11678051-11678070 | None:intergenic | 20.0% |
!!! | AATCATCTTTCACATTTTTT+TGG | + | chr8_4:11678055-11678074 | Msa1313600:CDS | 20.0% |
!!! | ATCATCTTTCACATTTTTTT+GGG | + | chr8_4:11678056-11678075 | Msa1313600:CDS | 20.0% |
!! | AAGAAGAATGAGAAAATAAA+AGG | - | chr8_4:11678223-11678242 | None:intergenic | 20.0% |
!!! | AGATCTTTTAGATATTCTTT+TGG | + | chr8_4:11678392-11678411 | Msa1313600:CDS | 20.0% |
!! | GATTTTAAACTGAGAAAGAA+AGG | + | chr8_4:11677347-11677366 | Msa1313600:CDS | 25.0% |
!!! | GATGAAAAGTGTTTGAAAAA+GGG | - | chr8_4:11677425-11677444 | None:intergenic | 25.0% |
!!! | AGATGAAAAGTGTTTGAAAA+AGG | - | chr8_4:11677426-11677445 | None:intergenic | 25.0% |
!!! | TTTTTCAAACACTTTTCATC+TGG | + | chr8_4:11677425-11677444 | Msa1313600:CDS | 25.0% |
! | CATCAACAACAAGTTAATAT+TGG | - | chr8_4:11677699-11677718 | None:intergenic | 25.0% |
! | AAACATTCTTCATCTCATTA+AGG | - | chr8_4:11678028-11678047 | None:intergenic | 25.0% |
! | TCACTTTGTATACCTAATTT+AGG | + | chr8_4:11678284-11678303 | Msa1313600:intron | 25.0% |
!! | TACAATCTATTGTTGATGAA+AGG | + | chr8_4:11678331-11678350 | Msa1313600:CDS | 25.0% |
!! | GATTTTAAACTGAGAAAGAA+AGG | + | chr8_4:11677347-11677366 | Msa1313600:CDS | 25.0% |
!!! | GATGAAAAGTGTTTGAAAAA+GGG | - | chr8_4:11677425-11677444 | None:intergenic | 25.0% |
!!! | AGATGAAAAGTGTTTGAAAA+AGG | - | chr8_4:11677426-11677445 | None:intergenic | 25.0% |
!!! | TTTTTCAAACACTTTTCATC+TGG | + | chr8_4:11677425-11677444 | Msa1313600:CDS | 25.0% |
! | CATCAACAACAAGTTAATAT+TGG | - | chr8_4:11677699-11677718 | None:intergenic | 25.0% |
! | AAACATTCTTCATCTCATTA+AGG | - | chr8_4:11678028-11678047 | None:intergenic | 25.0% |
! | TCACTTTGTATACCTAATTT+AGG | + | chr8_4:11678284-11678303 | Msa1313600:intron | 25.0% |
!! | TACAATCTATTGTTGATGAA+AGG | + | chr8_4:11678331-11678350 | Msa1313600:CDS | 25.0% |
! | ATTTTGCTGACAAAATTGTG+AGG | + | chr8_4:11677303-11677322 | Msa1313600:CDS | 30.0% |
TGTCATTGACAAATTCATCA+GGG | - | chr8_4:11677454-11677473 | None:intergenic | 30.0% | |
ATGTCATTGACAAATTCATC+AGG | - | chr8_4:11677455-11677474 | None:intergenic | 30.0% | |
ACGAAGAAAGTAAATAGCAA+AGG | - | chr8_4:11677562-11677581 | None:intergenic | 30.0% | |
TGTTGTTGATGTTTCAGATA+TGG | + | chr8_4:11677708-11677727 | Msa1313600:intron | 30.0% | |
!! | ACATAGGTATTTTAAACGAC+TGG | + | chr8_4:11677890-11677909 | Msa1313600:CDS | 30.0% |
TGGAGATTCATTTAACGTTA+TGG | + | chr8_4:11678109-11678128 | Msa1313600:CDS | 30.0% | |
! | ATTCTCTTTTATGCCCATAA+AGG | + | chr8_4:11678142-11678161 | Msa1313600:CDS | 30.0% |
TTTGGAAATAAACGACGAAA+AGG | + | chr8_4:11678410-11678429 | Msa1313600:CDS | 30.0% | |
TTGGAAATAAACGACGAAAA+GGG | + | chr8_4:11678411-11678430 | Msa1313600:CDS | 30.0% | |
! | ATTTTGCTGACAAAATTGTG+AGG | + | chr8_4:11677303-11677322 | Msa1313600:CDS | 30.0% |
TGTCATTGACAAATTCATCA+GGG | - | chr8_4:11677454-11677473 | None:intergenic | 30.0% | |
ATGTCATTGACAAATTCATC+AGG | - | chr8_4:11677455-11677474 | None:intergenic | 30.0% | |
ACGAAGAAAGTAAATAGCAA+AGG | - | chr8_4:11677562-11677581 | None:intergenic | 30.0% | |
TGTTGTTGATGTTTCAGATA+TGG | + | chr8_4:11677708-11677727 | Msa1313600:intron | 30.0% | |
!! | ACATAGGTATTTTAAACGAC+TGG | + | chr8_4:11677890-11677909 | Msa1313600:CDS | 30.0% |
TGGAGATTCATTTAACGTTA+TGG | + | chr8_4:11678109-11678128 | Msa1313600:CDS | 30.0% | |
! | ATTCTCTTTTATGCCCATAA+AGG | + | chr8_4:11678142-11678161 | Msa1313600:CDS | 30.0% |
TTTGGAAATAAACGACGAAA+AGG | + | chr8_4:11678410-11678429 | Msa1313600:CDS | 30.0% | |
TTGGAAATAAACGACGAAAA+GGG | + | chr8_4:11678411-11678430 | Msa1313600:CDS | 30.0% | |
!!! | ATTTTTGTTGCCACTTTGCT+AGG | + | chr8_4:11677272-11677291 | Msa1313600:CDS | 35.0% |
TTGTGAGGAATTTGAATGTG+TGG | + | chr8_4:11677318-11677337 | Msa1313600:CDS | 35.0% | |
CAAGTGTGTCTTGTACATAA+CGG | - | chr8_4:11677739-11677758 | None:intergenic | 35.0% | |
ATGTACAAGACACACTTGTA+TGG | + | chr8_4:11677741-11677760 | Msa1313600:CDS | 35.0% | |
!! | ACTAGCTTAGTGATCGATTT+TGG | - | chr8_4:11677846-11677865 | None:intergenic | 35.0% |
AATCGATCACTAAGCTAGTA+TGG | + | chr8_4:11677847-11677866 | Msa1313600:CDS | 35.0% | |
AATACCTATGTTCACCACTT+AGG | - | chr8_4:11677881-11677900 | None:intergenic | 35.0% | |
!!! | AATGTATTTTGGCCAACGAT+AGG | - | chr8_4:11677924-11677943 | None:intergenic | 35.0% |
TATGTACATACAACGCATTG+AGG | + | chr8_4:11677947-11677966 | Msa1313600:CDS | 35.0% | |
TCTCATTAAGGAACTCAACA+GGG | - | chr8_4:11678016-11678035 | None:intergenic | 35.0% | |
ATCTCATTAAGGAACTCAAC+AGG | - | chr8_4:11678017-11678036 | None:intergenic | 35.0% | |
CCAAATTTATTGACGATGAC+CGG | - | chr8_4:11678092-11678111 | None:intergenic | 35.0% | |
ACTTCTTACGTGCCTAAATT+AGG | - | chr8_4:11678299-11678318 | None:intergenic | 35.0% | |
AATTTAGGCACGTAAGAAGT+TGG | + | chr8_4:11678299-11678318 | Msa1313600:intron | 35.0% | |
CGAAAAGGGTGAAAAATTAG+AGG | + | chr8_4:11678425-11678444 | Msa1313600:CDS | 35.0% | |
! | TTGGCTTTCTTCAAACAAAG+TGG | - | chr8_4:11678549-11678568 | None:intergenic | 35.0% |
!!! | ATTTTTGTTGCCACTTTGCT+AGG | + | chr8_4:11677272-11677291 | Msa1313600:CDS | 35.0% |
TTGTGAGGAATTTGAATGTG+TGG | + | chr8_4:11677318-11677337 | Msa1313600:CDS | 35.0% | |
CAAGTGTGTCTTGTACATAA+CGG | - | chr8_4:11677739-11677758 | None:intergenic | 35.0% | |
ATGTACAAGACACACTTGTA+TGG | + | chr8_4:11677741-11677760 | Msa1313600:CDS | 35.0% | |
!! | ACTAGCTTAGTGATCGATTT+TGG | - | chr8_4:11677846-11677865 | None:intergenic | 35.0% |
AATCGATCACTAAGCTAGTA+TGG | + | chr8_4:11677847-11677866 | Msa1313600:CDS | 35.0% | |
AATACCTATGTTCACCACTT+AGG | - | chr8_4:11677881-11677900 | None:intergenic | 35.0% | |
!!! | AATGTATTTTGGCCAACGAT+AGG | - | chr8_4:11677924-11677943 | None:intergenic | 35.0% |
TATGTACATACAACGCATTG+AGG | + | chr8_4:11677947-11677966 | Msa1313600:CDS | 35.0% | |
TCTCATTAAGGAACTCAACA+GGG | - | chr8_4:11678016-11678035 | None:intergenic | 35.0% | |
ATCTCATTAAGGAACTCAAC+AGG | - | chr8_4:11678017-11678036 | None:intergenic | 35.0% | |
CCAAATTTATTGACGATGAC+CGG | - | chr8_4:11678092-11678111 | None:intergenic | 35.0% | |
ACTTCTTACGTGCCTAAATT+AGG | - | chr8_4:11678299-11678318 | None:intergenic | 35.0% | |
AATTTAGGCACGTAAGAAGT+TGG | + | chr8_4:11678299-11678318 | Msa1313600:intron | 35.0% | |
CGAAAAGGGTGAAAAATTAG+AGG | + | chr8_4:11678425-11678444 | Msa1313600:CDS | 35.0% | |
! | TTGGCTTTCTTCAAACAAAG+TGG | - | chr8_4:11678549-11678568 | None:intergenic | 35.0% |
ATTGTAGCATCCTAGCAAAG+TGG | - | chr8_4:11677285-11677304 | None:intergenic | 40.0% | |
ACATGGGATGGCCTATTATT+GGG | + | chr8_4:11677390-11677409 | Msa1313600:CDS | 40.0% | |
GACAGATGATGTGAACTTTG+AGG | + | chr8_4:11677812-11677831 | Msa1313600:CDS | 40.0% | |
! | GATGATGTGAACTTTGAGGA+AGG | + | chr8_4:11677816-11677835 | Msa1313600:CDS | 40.0% |
!! | GTATGGACTAGATACCTAAG+TGG | + | chr8_4:11677864-11677883 | Msa1313600:CDS | 40.0% |
GATACCTAAGTGGTGAACAT+AGG | + | chr8_4:11677874-11677893 | Msa1313600:CDS | 40.0% | |
!!! | TTTTTTGGGATCTTGCGATC+CGG | + | chr8_4:11678070-11678089 | Msa1313600:CDS | 40.0% |
CCGGTCATCGTCAATAAATT+TGG | + | chr8_4:11678089-11678108 | Msa1313600:CDS | 40.0% | |
TCATTTAACGTTATGGCTGC+TGG | + | chr8_4:11678116-11678135 | Msa1313600:CDS | 40.0% | |
! | GCTTTGTTGAAAGCAAAACC+AGG | - | chr8_4:11678170-11678189 | None:intergenic | 40.0% |
! | TGCTTTCAACAAAGCACTCA+AGG | + | chr8_4:11678175-11678194 | Msa1313600:CDS | 40.0% |
! | TTCAACAAAGCACTCAAGGT+TGG | + | chr8_4:11678179-11678198 | Msa1313600:intron | 40.0% |
!! | AGGAAAGCGCTGCTAAAAAA+TGG | + | chr8_4:11678351-11678370 | Msa1313600:CDS | 40.0% |
!! | GGAAAGCGCTGCTAAAAAAT+GGG | + | chr8_4:11678352-11678371 | Msa1313600:CDS | 40.0% |
CATTAGCAACTGCTATGATG+TGG | + | chr8_4:11678499-11678518 | Msa1313600:CDS | 40.0% | |
ATTGTAGCATCCTAGCAAAG+TGG | - | chr8_4:11677285-11677304 | None:intergenic | 40.0% | |
ACATGGGATGGCCTATTATT+GGG | + | chr8_4:11677390-11677409 | Msa1313600:CDS | 40.0% | |
GACAGATGATGTGAACTTTG+AGG | + | chr8_4:11677812-11677831 | Msa1313600:CDS | 40.0% | |
! | GATGATGTGAACTTTGAGGA+AGG | + | chr8_4:11677816-11677835 | Msa1313600:CDS | 40.0% |
!! | GTATGGACTAGATACCTAAG+TGG | + | chr8_4:11677864-11677883 | Msa1313600:CDS | 40.0% |
GATACCTAAGTGGTGAACAT+AGG | + | chr8_4:11677874-11677893 | Msa1313600:CDS | 40.0% | |
!!! | TTTTTTGGGATCTTGCGATC+CGG | + | chr8_4:11678070-11678089 | Msa1313600:CDS | 40.0% |
CCGGTCATCGTCAATAAATT+TGG | + | chr8_4:11678089-11678108 | Msa1313600:CDS | 40.0% | |
TCATTTAACGTTATGGCTGC+TGG | + | chr8_4:11678116-11678135 | Msa1313600:CDS | 40.0% | |
! | GCTTTGTTGAAAGCAAAACC+AGG | - | chr8_4:11678170-11678189 | None:intergenic | 40.0% |
! | TGCTTTCAACAAAGCACTCA+AGG | + | chr8_4:11678175-11678194 | Msa1313600:CDS | 40.0% |
! | TTCAACAAAGCACTCAAGGT+TGG | + | chr8_4:11678179-11678198 | Msa1313600:intron | 40.0% |
!! | AGGAAAGCGCTGCTAAAAAA+TGG | + | chr8_4:11678351-11678370 | Msa1313600:CDS | 40.0% |
!! | GGAAAGCGCTGCTAAAAAAT+GGG | + | chr8_4:11678352-11678371 | Msa1313600:CDS | 40.0% |
CATTAGCAACTGCTATGATG+TGG | + | chr8_4:11678499-11678518 | Msa1313600:CDS | 40.0% | |
GACATGGGATGGCCTATTAT+TGG | + | chr8_4:11677389-11677408 | Msa1313600:CDS | 45.0% | |
GGCCTATTATTGGGAACATG+TGG | + | chr8_4:11677399-11677418 | Msa1313600:CDS | 45.0% | |
GGCCACATGTTCCCAATAAT+AGG | - | chr8_4:11677404-11677423 | None:intergenic | 45.0% | |
GCAGAAGTGACTATGATGCT+TGG | - | chr8_4:11677771-11677790 | None:intergenic | 45.0% | |
TTCTGCTGCTATGTGCAAGA+AGG | + | chr8_4:11677785-11677804 | Msa1313600:CDS | 45.0% | |
!! | TTTATGCCCATAAAGGCACC+TGG | + | chr8_4:11678149-11678168 | Msa1313600:CDS | 45.0% |
GCAAAACCAGGTGCCTTTAT+GGG | - | chr8_4:11678158-11678177 | None:intergenic | 45.0% | |
AGCAAAACCAGGTGCCTTTA+TGG | - | chr8_4:11678159-11678178 | None:intergenic | 45.0% | |
! | CTGATAGCGCTATTGCTTAG+TGG | + | chr8_4:11678468-11678487 | Msa1313600:CDS | 45.0% |
GACATGGGATGGCCTATTAT+TGG | + | chr8_4:11677389-11677408 | Msa1313600:CDS | 45.0% | |
GGCCTATTATTGGGAACATG+TGG | + | chr8_4:11677399-11677418 | Msa1313600:CDS | 45.0% | |
GGCCACATGTTCCCAATAAT+AGG | - | chr8_4:11677404-11677423 | None:intergenic | 45.0% | |
GCAGAAGTGACTATGATGCT+TGG | - | chr8_4:11677771-11677790 | None:intergenic | 45.0% | |
TTCTGCTGCTATGTGCAAGA+AGG | + | chr8_4:11677785-11677804 | Msa1313600:CDS | 45.0% | |
!! | TTTATGCCCATAAAGGCACC+TGG | + | chr8_4:11678149-11678168 | Msa1313600:CDS | 45.0% |
GCAAAACCAGGTGCCTTTAT+GGG | - | chr8_4:11678158-11678177 | None:intergenic | 45.0% | |
AGCAAAACCAGGTGCCTTTA+TGG | - | chr8_4:11678159-11678178 | None:intergenic | 45.0% | |
! | CTGATAGCGCTATTGCTTAG+TGG | + | chr8_4:11678468-11678487 | Msa1313600:CDS | 45.0% |
AAAGGACATCCACTACCTCC+TGG | + | chr8_4:11677365-11677384 | Msa1313600:CDS | 50.0% | |
CTGGTCACTTCTCCTATCGT+TGG | + | chr8_4:11677909-11677928 | Msa1313600:CDS | 50.0% | |
AAAGGACATCCACTACCTCC+TGG | + | chr8_4:11677365-11677384 | Msa1313600:CDS | 50.0% | |
CTGGTCACTTCTCCTATCGT+TGG | + | chr8_4:11677909-11677928 | Msa1313600:CDS | 50.0% | |
TCCACTACCTCCTGGTGACA+TGG | + | chr8_4:11677373-11677392 | Msa1313600:CDS | 55.0% | |
CCACTACCTCCTGGTGACAT+GGG | + | chr8_4:11677374-11677393 | Msa1313600:CDS | 55.0% | |
TACCTCCTGGTGACATGGGA+TGG | + | chr8_4:11677378-11677397 | Msa1313600:CDS | 55.0% | |
ATAGGCCATCCCATGTCACC+AGG | - | chr8_4:11677386-11677405 | None:intergenic | 55.0% | |
TCCACTACCTCCTGGTGACA+TGG | + | chr8_4:11677373-11677392 | Msa1313600:CDS | 55.0% | |
CCACTACCTCCTGGTGACAT+GGG | + | chr8_4:11677374-11677393 | Msa1313600:CDS | 55.0% | |
TACCTCCTGGTGACATGGGA+TGG | + | chr8_4:11677378-11677397 | Msa1313600:CDS | 55.0% | |
ATAGGCCATCCCATGTCACC+AGG | - | chr8_4:11677386-11677405 | None:intergenic | 55.0% | |
CCCATGTCACCAGGAGGTAG+TGG | - | chr8_4:11677377-11677396 | None:intergenic | 60.0% | |
CCCATGTCACCAGGAGGTAG+TGG | - | chr8_4:11677377-11677396 | None:intergenic | 60.0% | |
GGCCATCCCATGTCACCAGG+AGG | - | chr8_4:11677383-11677402 | None:intergenic | 65.0% | |
GGCCATCCCATGTCACCAGG+AGG | - | chr8_4:11677383-11677402 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 11677251 | 11678569 | 11677251 | ID=Msa1313600;Name=Msa1313600 |
chr8_4 | mRNA | 11677251 | 11678569 | 11677251 | ID=Msa1313600-mRNA-1;Parent=Msa1313600;Name=Msa1313600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.33|1|1|1|3|0|323 |
chr8_4 | exon | 11677251 | 11677483 | 11677251 | ID=Msa1313600-mRNA-1:exon:4405;Parent=Msa1313600-mRNA-1 |
chr8_4 | exon | 11677725 | 11678196 | 11677725 | ID=Msa1313600-mRNA-1:exon:4406;Parent=Msa1313600-mRNA-1 |
chr8_4 | exon | 11678306 | 11678569 | 11678306 | ID=Msa1313600-mRNA-1:exon:4407;Parent=Msa1313600-mRNA-1 |
chr8_4 | CDS | 11677251 | 11677483 | 11677251 | ID=Msa1313600-mRNA-1:cds;Parent=Msa1313600-mRNA-1 |
chr8_4 | CDS | 11677725 | 11678196 | 11677725 | ID=Msa1313600-mRNA-1:cds;Parent=Msa1313600-mRNA-1 |
chr8_4 | CDS | 11678306 | 11678569 | 11678306 | ID=Msa1313600-mRNA-1:cds;Parent=Msa1313600-mRNA-1 |
Gene Sequence |
Protein sequence |