Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280090 | sp|Q9C8S6|PP16B_ARATH | 57.432 | 148 | 62 | 1 | 1 | 148 | 1 | 147 | 2.69e-55 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280090 | G7LCN6 | 96.622 | 148 | 5 | 0 | 1 | 148 | 1 | 148 | 2.58e-100 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011840 | Msa1280090 | 0.806113 | 9.630858e-50 | -8.615850e-47 |
| Msa0060670 | Msa1280090 | 0.818231 | 2.183068e-52 | -8.615850e-47 |
| Msa0089730 | Msa1280090 | 0.807717 | 4.410417e-50 | -8.615850e-47 |
| Msa0105410 | Msa1280090 | 0.837617 | 4.676753e-57 | -8.615850e-47 |
| Msa1238600 | Msa1280090 | 0.859746 | 3.342443e-63 | -8.615850e-47 |
| Msa1280090 | Msa1319560 | 0.819197 | 1.317899e-52 | -8.615850e-47 |
| Msa0388360 | Msa1280090 | 0.807617 | 4.631766e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280090 | MtrunA17_Chr8g0350031 | 96.622 | 148 | 5 | 0 | 1 | 148 | 1 | 148 | 4.96e-104 | 293 |
| Msa1280090 | MtrunA17_Chr8g0350021 | 82.432 | 148 | 26 | 0 | 1 | 148 | 1 | 148 | 7.20e-92 | 263 |
| Msa1280090 | MtrunA17_Chr5g0435251 | 40.645 | 155 | 77 | 4 | 1 | 144 | 1 | 151 | 4.26e-37 | 124 |
| Msa1280090 | MtrunA17_Chr5g0435261 | 40.506 | 158 | 78 | 5 | 1 | 145 | 1 | 155 | 1.34e-32 | 113 |
| Msa1280090 | MtrunA17_Chr1g0147471 | 66.129 | 62 | 21 | 0 | 25 | 86 | 1 | 62 | 3.71e-27 | 96.7 |
| Msa1280090 | MtrunA17_Chr8g0348941 | 33.108 | 148 | 85 | 4 | 1 | 135 | 1 | 147 | 3.57e-20 | 82.0 |
| Msa1280090 | MtrunA17_Chr7g0246521 | 56.604 | 53 | 23 | 0 | 25 | 77 | 1 | 53 | 2.99e-19 | 76.3 |
| Msa1280090 | MtrunA17_Chr5g0393481 | 26.984 | 126 | 90 | 2 | 6 | 130 | 15 | 139 | 1.21e-13 | 65.9 |
| Msa1280090 | MtrunA17_Chr5g0393541 | 27.731 | 119 | 84 | 2 | 6 | 123 | 11 | 128 | 3.01e-12 | 62.4 |
| Msa1280090 | MtrunA17_Chr2g0290631 | 37.500 | 96 | 58 | 2 | 4 | 99 | 6 | 99 | 3.69e-12 | 60.5 |
| Msa1280090 | MtrunA17_Chr3g0137471 | 31.496 | 127 | 81 | 4 | 3 | 127 | 465 | 587 | 1.06e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280090 | AT1G63220.1 | 57.432 | 148 | 62 | 1 | 1 | 148 | 1 | 147 | 2.73e-56 | 173 |
| Msa1280090 | AT1G63220.2 | 53.378 | 148 | 54 | 2 | 1 | 148 | 1 | 133 | 1.09e-47 | 150 |
| Msa1280090 | AT3G55470.2 | 36.076 | 158 | 87 | 4 | 1 | 147 | 1 | 155 | 1.34e-25 | 95.5 |
| Msa1280090 | AT3G55470.1 | 36.478 | 159 | 86 | 5 | 1 | 147 | 1 | 156 | 1.36e-24 | 92.8 |
| Msa1280090 | AT4G00467.2 | 32.331 | 133 | 79 | 3 | 1 | 122 | 1 | 133 | 1.25e-17 | 75.9 |
| Msa1280090 | AT4G00467.1 | 32.331 | 133 | 79 | 3 | 1 | 122 | 1 | 133 | 2.44e-17 | 75.5 |
| Msa1280090 | AT5G47710.1 | 37.755 | 98 | 59 | 2 | 2 | 99 | 4 | 99 | 5.87e-13 | 63.2 |
| Msa1280090 | AT5G47710.2 | 37.755 | 98 | 59 | 2 | 2 | 99 | 4 | 99 | 5.87e-13 | 63.2 |
| Msa1280090 | AT5G47710.3 | 37.755 | 98 | 59 | 2 | 2 | 99 | 4 | 99 | 5.87e-13 | 63.2 |
| Msa1280090 | AT5G47710.4 | 37.755 | 98 | 59 | 2 | 2 | 99 | 4 | 99 | 5.87e-13 | 63.2 |
| Msa1280090 | AT4G34150.1 | 27.966 | 118 | 83 | 2 | 6 | 122 | 12 | 128 | 1.90e-12 | 63.2 |
| Msa1280090 | AT5G04220.1 | 29.452 | 146 | 90 | 4 | 2 | 135 | 37 | 181 | 2.89e-12 | 63.2 |
| Msa1280090 | AT5G04220.2 | 29.114 | 158 | 97 | 5 | 2 | 147 | 259 | 413 | 2.84e-11 | 60.5 |
| Msa1280090 | AT5G04220.3 | 29.114 | 158 | 97 | 5 | 2 | 147 | 197 | 351 | 6.03e-11 | 59.7 |
Find 34 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATATTGTGGAGAGATTA+AGG | 0.258182 | 8_3:-18028049 | Msa1280090:CDS |
| GTTTGGACACAAATTCTAAA+TGG | 0.269784 | 8_3:+18029436 | None:intergenic |
| ACAATATTATGTTATGGAAA+TGG | 0.271655 | 8_3:+18027431 | None:intergenic |
| TATAATAATGATGATAATAT+TGG | 0.281672 | 8_3:-18028666 | Msa1280090:CDS |
| GAGGCATCTTTCTTTGAGTT+TGG | 0.300572 | 8_3:+18029419 | None:intergenic |
| TTCTATCTCTAGAATTCCTT+TGG | 0.311198 | 8_3:-18028130 | Msa1280090:intron |
| CAATATTATGTTATGGAAAT+GGG | 0.317693 | 8_3:+18027432 | None:intergenic |
| TGAGCTGAATCTAAAGATAA+TGG | 0.346296 | 8_3:-18028700 | Msa1280090:CDS |
| GCTCCTGTGCACTGTAACTA+AGG | 0.366774 | 8_3:+18028900 | None:intergenic |
| ACAATTACAATATTATGTTA+TGG | 0.390085 | 8_3:+18027425 | None:intergenic |
| ACAAGATTGTAAGCATTCTC+TGG | 0.421167 | 8_3:+18028081 | None:intergenic |
| GTTTCTTAAAGTTGAAGTAA+AGG | 0.443076 | 8_3:+18029502 | None:intergenic |
| GAAAAGTCTCATTCCATTGT+GGG | 0.465952 | 8_3:+18028748 | None:intergenic |
| GAATCTAAAGATAATGGAAA+AGG | 0.493781 | 8_3:-18028694 | Msa1280090:CDS |
| TACAATGAAGAGGAGGAGAC+TGG | 0.511786 | 8_3:-18027642 | Msa1280090:CDS |
| AAGAGGAGGAGACTGGTGGA+TGG | 0.524498 | 8_3:-18027635 | Msa1280090:CDS |
| CACAAGAGTGCTGTTCAAGA+AGG | 0.553199 | 8_3:-18028878 | Msa1280090:intron |
| AGAAAAGTCTCATTCCATTG+TGG | 0.555092 | 8_3:+18028747 | None:intergenic |
| GATTGTAAGCATTCTCTGGA+AGG | 0.568662 | 8_3:+18028085 | None:intergenic |
| CTGTAACTAAGGATCACATA+AGG | 0.576082 | 8_3:+18028911 | None:intergenic |
| GATCCTTAGTTACAGTGCAC+AGG | 0.590583 | 8_3:-18028903 | Msa1280090:CDS |
| GTGAAGGATGAAGAATATTG+TGG | 0.592520 | 8_3:-18028060 | Msa1280090:CDS |
| TTGGATGCAGTGTTTGAAGA+GGG | 0.596780 | 8_3:-18028111 | Msa1280090:CDS |
| TCTTCAAACACTGCATCCAA+AGG | 0.599160 | 8_3:+18028114 | None:intergenic |
| TTATTTGAGACACTAAAATG+TGG | 0.599857 | 8_3:+18029611 | None:intergenic |
| TTTGGATGCAGTGTTTGAAG+AGG | 0.605012 | 8_3:-18028112 | Msa1280090:CDS |
| TGATCAGAATTACAATGAAG+AGG | 0.608313 | 8_3:-18027652 | Msa1280090:CDS |
| AATGAAGAGGAGGAGACTGG+TGG | 0.640663 | 8_3:-18027639 | Msa1280090:CDS |
| GAATGCTTACAATCTTGTGA+AGG | 0.644186 | 8_3:-18028076 | Msa1280090:CDS |
| TCAGAATTACAATGAAGAGG+AGG | 0.653772 | 8_3:-18027649 | Msa1280090:CDS |
| AATGAAGAGGTTGAGACTTG+TGG | 0.659471 | 8_3:-18027584 | Msa1280090:three_prime_UTR |
| GTGCTGGATCTAACCCACAA+TGG | 0.679425 | 8_3:-18028761 | Msa1280090:CDS |
| ACTCAAAGAAAGATGCCTCG+TGG | 0.682508 | 8_3:-18029415 | Msa1280090:exon |
| ATAACTTCAAGAGTTCCACG+AGG | 0.830018 | 8_3:+18029400 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATTTAATTAGTTAAAT+TGG | + | chr8_3:18028004-18028023 | None:intergenic | 10.0% |
| !! | TATAATAATGATGATAATAT+TGG | - | chr8_3:18028324-18028343 | Msa1280090:intron | 10.0% |
| !! | AACAATTTAATTAGTTAAAT+TGG | + | chr8_3:18028004-18028023 | None:intergenic | 10.0% |
| !! | TATAATAATGATGATAATAT+TGG | - | chr8_3:18028324-18028343 | Msa1280090:intron | 10.0% |
| !!! | TAATTATTTTTTACTGATTC+AGG | - | chr8_3:18027442-18027461 | Msa1280090:three_prime_UTR | 15.0% |
| !!! | TAATAATCAAATCATTTTTC+AGG | + | chr8_3:18027800-18027819 | None:intergenic | 15.0% |
| !!! | ATCTTTTTATGAATAATATC+AGG | - | chr8_3:18028207-18028226 | Msa1280090:intron | 15.0% |
| !!! | TTTTTGCTTATATTTCATTT+CGG | + | chr8_3:18028524-18028543 | None:intergenic | 15.0% |
| !! | TAAAAAAAAATTACACCTAA+AGG | - | chr8_3:18028694-18028713 | Msa1280090:CDS | 15.0% |
| !! | ATCATATATGAATGAATATT+TGG | + | chr8_3:18028754-18028773 | None:intergenic | 15.0% |
| !!! | ATTGATAGTACATTTTAATA+GGG | + | chr8_3:18029298-18029317 | None:intergenic | 15.0% |
| !!! | AATTGATAGTACATTTTAAT+AGG | + | chr8_3:18029299-18029318 | None:intergenic | 15.0% |
| !! | TAAAATGTACTATCAATTAT+TGG | - | chr8_3:18029301-18029320 | Msa1280090:intron | 15.0% |
| !!! | TTTTTTTGTAGAACTAATTA+TGG | + | chr8_3:18029454-18029473 | None:intergenic | 15.0% |
| !! | ACAATTACAATATTATGTTA+TGG | + | chr8_3:18029568-18029587 | None:intergenic | 15.0% |
| !!! | TAATTATTTTTTACTGATTC+AGG | - | chr8_3:18027442-18027461 | Msa1280090:three_prime_UTR | 15.0% |
| !!! | TAATAATCAAATCATTTTTC+AGG | + | chr8_3:18027800-18027819 | None:intergenic | 15.0% |
| !!! | ATCTTTTTATGAATAATATC+AGG | - | chr8_3:18028207-18028226 | Msa1280090:intron | 15.0% |
| !!! | TTTTTGCTTATATTTCATTT+CGG | + | chr8_3:18028524-18028543 | None:intergenic | 15.0% |
| !! | TAAAAAAAAATTACACCTAA+AGG | - | chr8_3:18028694-18028713 | Msa1280090:CDS | 15.0% |
| !! | ATCATATATGAATGAATATT+TGG | + | chr8_3:18028754-18028773 | None:intergenic | 15.0% |
| !!! | ATTGATAGTACATTTTAATA+GGG | + | chr8_3:18029298-18029317 | None:intergenic | 15.0% |
| !!! | AATTGATAGTACATTTTAAT+AGG | + | chr8_3:18029299-18029318 | None:intergenic | 15.0% |
| !! | TAAAATGTACTATCAATTAT+TGG | - | chr8_3:18029301-18029320 | Msa1280090:intron | 15.0% |
| !!! | TTTTTTTGTAGAACTAATTA+TGG | + | chr8_3:18029454-18029473 | None:intergenic | 15.0% |
| !! | ACAATTACAATATTATGTTA+TGG | + | chr8_3:18029568-18029587 | None:intergenic | 15.0% |
| !! | AATTGAAATATAAGCAAAAG+TGG | + | chr8_3:18028611-18028630 | None:intergenic | 20.0% |
| !! | ATGAAAGTAGTATATTGAAT+TGG | - | chr8_3:18029177-18029196 | Msa1280090:intron | 20.0% |
| !!! | GACAATTTTTTTTTGCAAAT+GGG | - | chr8_3:18029213-18029232 | Msa1280090:intron | 20.0% |
| !! | CAATATTATGTTATGGAAAT+GGG | + | chr8_3:18029561-18029580 | None:intergenic | 20.0% |
| !! | ACAATATTATGTTATGGAAA+TGG | + | chr8_3:18029562-18029581 | None:intergenic | 20.0% |
| !! | AATTGAAATATAAGCAAAAG+TGG | + | chr8_3:18028611-18028630 | None:intergenic | 20.0% |
| !! | ATGAAAGTAGTATATTGAAT+TGG | - | chr8_3:18029177-18029196 | Msa1280090:intron | 20.0% |
| !!! | GACAATTTTTTTTTGCAAAT+GGG | - | chr8_3:18029213-18029232 | Msa1280090:intron | 20.0% |
| !! | CAATATTATGTTATGGAAAT+GGG | + | chr8_3:18029561-18029580 | None:intergenic | 20.0% |
| !! | ACAATATTATGTTATGGAAA+TGG | + | chr8_3:18029562-18029581 | None:intergenic | 20.0% |
| !! | TTATTTGAGACACTAAAATG+TGG | + | chr8_3:18027382-18027401 | None:intergenic | 25.0% |
| ! | GTTTCTTAAAGTTGAAGTAA+AGG | + | chr8_3:18027491-18027510 | None:intergenic | 25.0% |
| ! | GTAATTCTATGTCTATACAT+AGG | - | chr8_3:18027658-18027677 | Msa1280090:CDS | 25.0% |
| ! | AAAAAATGAAAGTCAACTCT+TGG | + | chr8_3:18027758-18027777 | None:intergenic | 25.0% |
| ! | AGAAATTATTCATGCTAAGT+TGG | - | chr8_3:18027826-18027845 | Msa1280090:intron | 25.0% |
| !!! | TTTGTTATTTTGTTCTCTAG+TGG | - | chr8_3:18028173-18028192 | Msa1280090:intron | 25.0% |
| !!! | GAATCTAAAGATAATGGAAA+AGG | - | chr8_3:18028296-18028315 | Msa1280090:intron | 25.0% |
| ! | TTTAAATTGCAGTTACAAAG+TGG | + | chr8_3:18028491-18028510 | None:intergenic | 25.0% |
| ! | AAAAAAATTACACCTAAAGG+AGG | - | chr8_3:18028697-18028716 | Msa1280090:CDS | 25.0% |
| ! | AAAAAATTACACCTAAAGGA+GGG | - | chr8_3:18028698-18028717 | Msa1280090:CDS | 25.0% |
| ! | AAGTAAAAGAGAGAGAAAAA+TGG | - | chr8_3:18029078-18029097 | Msa1280090:intron | 25.0% |
| !!! | TTGAATTGGTCAGTTATTTT+AGG | - | chr8_3:18029191-18029210 | Msa1280090:intron | 25.0% |
| !!! | GGACAATTTTTTTTTGCAAA+TGG | - | chr8_3:18029212-18029231 | Msa1280090:intron | 25.0% |
| !!! | ATGGGTTAGTTATTTTAAGA+CGG | - | chr8_3:18029231-18029250 | Msa1280090:intron | 25.0% |
| !!! | AGTATGTTTTGAGAACATTT+AGG | - | chr8_3:18029475-18029494 | Msa1280090:five_prime_UTR | 25.0% |
| !! | ACTTTAATCATTGTGTTTTC+TGG | - | chr8_3:18029499-18029518 | Msa1280090:five_prime_UTR | 25.0% |
| !! | TTATTTGAGACACTAAAATG+TGG | + | chr8_3:18027382-18027401 | None:intergenic | 25.0% |
| ! | GTTTCTTAAAGTTGAAGTAA+AGG | + | chr8_3:18027491-18027510 | None:intergenic | 25.0% |
| ! | GTAATTCTATGTCTATACAT+AGG | - | chr8_3:18027658-18027677 | Msa1280090:CDS | 25.0% |
| ! | AAAAAATGAAAGTCAACTCT+TGG | + | chr8_3:18027758-18027777 | None:intergenic | 25.0% |
| ! | AGAAATTATTCATGCTAAGT+TGG | - | chr8_3:18027826-18027845 | Msa1280090:intron | 25.0% |
| !!! | TTTGTTATTTTGTTCTCTAG+TGG | - | chr8_3:18028173-18028192 | Msa1280090:intron | 25.0% |
| !!! | GAATCTAAAGATAATGGAAA+AGG | - | chr8_3:18028296-18028315 | Msa1280090:intron | 25.0% |
| ! | TTTAAATTGCAGTTACAAAG+TGG | + | chr8_3:18028491-18028510 | None:intergenic | 25.0% |
| ! | AAAAAAATTACACCTAAAGG+AGG | - | chr8_3:18028697-18028716 | Msa1280090:CDS | 25.0% |
| ! | AAAAAATTACACCTAAAGGA+GGG | - | chr8_3:18028698-18028717 | Msa1280090:CDS | 25.0% |
| ! | AAGTAAAAGAGAGAGAAAAA+TGG | - | chr8_3:18029078-18029097 | Msa1280090:intron | 25.0% |
| !!! | TTGAATTGGTCAGTTATTTT+AGG | - | chr8_3:18029191-18029210 | Msa1280090:intron | 25.0% |
| !!! | GGACAATTTTTTTTTGCAAA+TGG | - | chr8_3:18029212-18029231 | Msa1280090:intron | 25.0% |
| !!! | ATGGGTTAGTTATTTTAAGA+CGG | - | chr8_3:18029231-18029250 | Msa1280090:intron | 25.0% |
| !!! | AGTATGTTTTGAGAACATTT+AGG | - | chr8_3:18029475-18029494 | Msa1280090:five_prime_UTR | 25.0% |
| !! | ACTTTAATCATTGTGTTTTC+TGG | - | chr8_3:18029499-18029518 | Msa1280090:five_prime_UTR | 25.0% |
| GTTTGGACACAAATTCTAAA+TGG | + | chr8_3:18027557-18027576 | None:intergenic | 30.0% | |
| !!! | GTTATTTTGATCAGTGCTAA+AGG | - | chr8_3:18027608-18027627 | Msa1280090:exon | 30.0% |
| TTATGAATAATATCAGGTGC+TGG | - | chr8_3:18028213-18028232 | Msa1280090:intron | 30.0% | |
| TGAGCTGAATCTAAAGATAA+TGG | - | chr8_3:18028290-18028309 | Msa1280090:intron | 30.0% | |
| TCGATATTACGATTTCTCAT+GGG | + | chr8_3:18028459-18028478 | None:intergenic | 30.0% | |
| AGTTGAAAAGTCAATGTATG+TGG | + | chr8_3:18028587-18028606 | None:intergenic | 30.0% | |
| TTGGTCTCTTAAAACTAGTT+TGG | - | chr8_3:18028670-18028689 | Msa1280090:CDS | 30.0% | |
| !! | TTCTATCTCTAGAATTCCTT+TGG | - | chr8_3:18028860-18028879 | Msa1280090:intron | 30.0% |
| AGAATATTGTGGAGAGATTA+AGG | - | chr8_3:18028941-18028960 | Msa1280090:intron | 30.0% | |
| !!! | GTTAGTTATTTTAAGACGGA+GGG | - | chr8_3:18029235-18029254 | Msa1280090:intron | 30.0% |
| TGATCAGAATTACAATGAAG+AGG | - | chr8_3:18029338-18029357 | Msa1280090:intron | 30.0% | |
| GTTTGGACACAAATTCTAAA+TGG | + | chr8_3:18027557-18027576 | None:intergenic | 30.0% | |
| !!! | GTTATTTTGATCAGTGCTAA+AGG | - | chr8_3:18027608-18027627 | Msa1280090:exon | 30.0% |
| TTATGAATAATATCAGGTGC+TGG | - | chr8_3:18028213-18028232 | Msa1280090:intron | 30.0% | |
| TGAGCTGAATCTAAAGATAA+TGG | - | chr8_3:18028290-18028309 | Msa1280090:intron | 30.0% | |
| TCGATATTACGATTTCTCAT+GGG | + | chr8_3:18028459-18028478 | None:intergenic | 30.0% | |
| AGTTGAAAAGTCAATGTATG+TGG | + | chr8_3:18028587-18028606 | None:intergenic | 30.0% | |
| TTGGTCTCTTAAAACTAGTT+TGG | - | chr8_3:18028670-18028689 | Msa1280090:CDS | 30.0% | |
| !! | TTCTATCTCTAGAATTCCTT+TGG | - | chr8_3:18028860-18028879 | Msa1280090:intron | 30.0% |
| AGAATATTGTGGAGAGATTA+AGG | - | chr8_3:18028941-18028960 | Msa1280090:intron | 30.0% | |
| !!! | GTTAGTTATTTTAAGACGGA+GGG | - | chr8_3:18029235-18029254 | Msa1280090:intron | 30.0% |
| TGATCAGAATTACAATGAAG+AGG | - | chr8_3:18029338-18029357 | Msa1280090:intron | 30.0% | |
| !!! | TTACTGATTCAGGTCTTTTC+TGG | - | chr8_3:18027452-18027471 | Msa1280090:three_prime_UTR | 35.0% |
| GAAATTCCTGCATGAAACAA+TGG | - | chr8_3:18027730-18027749 | Msa1280090:intron | 35.0% | |
| CTGTAACTAAGGATCACATA+AGG | + | chr8_3:18028082-18028101 | None:intergenic | 35.0% | |
| GAAAAGTCTCATTCCATTGT+GGG | + | chr8_3:18028245-18028264 | None:intergenic | 35.0% | |
| AGAAAAGTCTCATTCCATTG+TGG | + | chr8_3:18028246-18028265 | None:intergenic | 35.0% | |
| GTTGAATGAAAATGCATTGC+TGG | - | chr8_3:18028409-18028428 | Msa1280090:intron | 35.0% | |
| GTCGATATTACGATTTCTCA+TGG | + | chr8_3:18028460-18028479 | None:intergenic | 35.0% | |
| !! | AAGTGAAAAGTTGATGTACG+TGG | - | chr8_3:18028548-18028567 | Msa1280090:intron | 35.0% |
| GTTTGACTATGTAACCTCAA+GGG | + | chr8_3:18028788-18028807 | None:intergenic | 35.0% | |
| AGTTTGACTATGTAACCTCA+AGG | + | chr8_3:18028789-18028808 | None:intergenic | 35.0% | |
| AATTGTCCATGAGATGTCAA+TGG | + | chr8_3:18028816-18028835 | None:intergenic | 35.0% | |
| ACAAGATTGTAAGCATTCTC+TGG | + | chr8_3:18028912-18028931 | None:intergenic | 35.0% | |
| GAATGCTTACAATCTTGTGA+AGG | - | chr8_3:18028914-18028933 | Msa1280090:CDS | 35.0% | |
| GTGAAGGATGAAGAATATTG+TGG | - | chr8_3:18028930-18028949 | Msa1280090:intron | 35.0% | |
| ! | CTTTTACACCTGAGGTAATA+AGG | - | chr8_3:18028973-18028992 | Msa1280090:intron | 35.0% |
| !! | TTATACAGCCTTATTACCTC+AGG | + | chr8_3:18028984-18029003 | None:intergenic | 35.0% |
| !!! | GGTTAGTTATTTTAAGACGG+AGG | - | chr8_3:18029234-18029253 | Msa1280090:intron | 35.0% |
| TCAGAATTACAATGAAGAGG+AGG | - | chr8_3:18029341-18029360 | Msa1280090:intron | 35.0% | |
| !!! | GACTTTTGAAGTGAATGAAG+AGG | - | chr8_3:18029393-18029412 | Msa1280090:CDS | 35.0% |
| !!! | TTACTGATTCAGGTCTTTTC+TGG | - | chr8_3:18027452-18027471 | Msa1280090:three_prime_UTR | 35.0% |
| GAAATTCCTGCATGAAACAA+TGG | - | chr8_3:18027730-18027749 | Msa1280090:intron | 35.0% | |
| CTGTAACTAAGGATCACATA+AGG | + | chr8_3:18028082-18028101 | None:intergenic | 35.0% | |
| GAAAAGTCTCATTCCATTGT+GGG | + | chr8_3:18028245-18028264 | None:intergenic | 35.0% | |
| AGAAAAGTCTCATTCCATTG+TGG | + | chr8_3:18028246-18028265 | None:intergenic | 35.0% | |
| GTTGAATGAAAATGCATTGC+TGG | - | chr8_3:18028409-18028428 | Msa1280090:intron | 35.0% | |
| GTCGATATTACGATTTCTCA+TGG | + | chr8_3:18028460-18028479 | None:intergenic | 35.0% | |
| !! | AAGTGAAAAGTTGATGTACG+TGG | - | chr8_3:18028548-18028567 | Msa1280090:intron | 35.0% |
| GTTTGACTATGTAACCTCAA+GGG | + | chr8_3:18028788-18028807 | None:intergenic | 35.0% | |
| AGTTTGACTATGTAACCTCA+AGG | + | chr8_3:18028789-18028808 | None:intergenic | 35.0% | |
| AATTGTCCATGAGATGTCAA+TGG | + | chr8_3:18028816-18028835 | None:intergenic | 35.0% | |
| ACAAGATTGTAAGCATTCTC+TGG | + | chr8_3:18028912-18028931 | None:intergenic | 35.0% | |
| GAATGCTTACAATCTTGTGA+AGG | - | chr8_3:18028914-18028933 | Msa1280090:CDS | 35.0% | |
| GTGAAGGATGAAGAATATTG+TGG | - | chr8_3:18028930-18028949 | Msa1280090:intron | 35.0% | |
| ! | CTTTTACACCTGAGGTAATA+AGG | - | chr8_3:18028973-18028992 | Msa1280090:intron | 35.0% |
| !! | TTATACAGCCTTATTACCTC+AGG | + | chr8_3:18028984-18029003 | None:intergenic | 35.0% |
| !!! | GGTTAGTTATTTTAAGACGG+AGG | - | chr8_3:18029234-18029253 | Msa1280090:intron | 35.0% |
| TCAGAATTACAATGAAGAGG+AGG | - | chr8_3:18029341-18029360 | Msa1280090:intron | 35.0% | |
| !!! | GACTTTTGAAGTGAATGAAG+AGG | - | chr8_3:18029393-18029412 | Msa1280090:CDS | 35.0% |
| ! | GAGGCATCTTTCTTTGAGTT+TGG | + | chr8_3:18027574-18027593 | None:intergenic | 40.0% |
| ATAACTTCAAGAGTTCCACG+AGG | + | chr8_3:18027593-18027612 | None:intergenic | 40.0% | |
| TTGGATCCATTGTTTCATGC+AGG | + | chr8_3:18027739-18027758 | None:intergenic | 40.0% | |
| TCAGAGCGAGTAAGTGTTAA+AGG | - | chr8_3:18028630-18028649 | Msa1280090:intron | 40.0% | |
| ! | GGTGGATTCTCATTGAAAGT+TGG | - | chr8_3:18028651-18028670 | Msa1280090:intron | 40.0% |
| CTCTTACCATTGACATCTCA+TGG | - | chr8_3:18028807-18028826 | Msa1280090:intron | 40.0% | |
| TCTTCAAACACTGCATCCAA+AGG | + | chr8_3:18028879-18028898 | None:intergenic | 40.0% | |
| TTTGGATGCAGTGTTTGAAG+AGG | - | chr8_3:18028878-18028897 | Msa1280090:intron | 40.0% | |
| TTGGATGCAGTGTTTGAAGA+GGG | - | chr8_3:18028879-18028898 | Msa1280090:CDS | 40.0% | |
| GATTGTAAGCATTCTCTGGA+AGG | + | chr8_3:18028908-18028927 | None:intergenic | 40.0% | |
| AATGAAGAGGTTGAGACTTG+TGG | - | chr8_3:18029406-18029425 | Msa1280090:CDS | 40.0% | |
| ! | GAGGCATCTTTCTTTGAGTT+TGG | + | chr8_3:18027574-18027593 | None:intergenic | 40.0% |
| ATAACTTCAAGAGTTCCACG+AGG | + | chr8_3:18027593-18027612 | None:intergenic | 40.0% | |
| TTGGATCCATTGTTTCATGC+AGG | + | chr8_3:18027739-18027758 | None:intergenic | 40.0% | |
| TCAGAGCGAGTAAGTGTTAA+AGG | - | chr8_3:18028630-18028649 | Msa1280090:intron | 40.0% | |
| ! | GGTGGATTCTCATTGAAAGT+TGG | - | chr8_3:18028651-18028670 | Msa1280090:intron | 40.0% |
| CTCTTACCATTGACATCTCA+TGG | - | chr8_3:18028807-18028826 | Msa1280090:intron | 40.0% | |
| TCTTCAAACACTGCATCCAA+AGG | + | chr8_3:18028879-18028898 | None:intergenic | 40.0% | |
| TTTGGATGCAGTGTTTGAAG+AGG | - | chr8_3:18028878-18028897 | Msa1280090:intron | 40.0% | |
| TTGGATGCAGTGTTTGAAGA+GGG | - | chr8_3:18028879-18028898 | Msa1280090:CDS | 40.0% | |
| GATTGTAAGCATTCTCTGGA+AGG | + | chr8_3:18028908-18028927 | None:intergenic | 40.0% | |
| AATGAAGAGGTTGAGACTTG+TGG | - | chr8_3:18029406-18029425 | Msa1280090:CDS | 40.0% | |
| ACTCAAAGAAAGATGCCTCG+TGG | - | chr8_3:18027575-18027594 | Msa1280090:three_prime_UTR | 45.0% | |
| GATCCTTAGTTACAGTGCAC+AGG | - | chr8_3:18028087-18028106 | Msa1280090:CDS | 45.0% | |
| !! | CACAAGAGTGCTGTTCAAGA+AGG | - | chr8_3:18028112-18028131 | Msa1280090:CDS | 45.0% |
| GAGCGAGTAAGTGTTAAAGG+TGG | - | chr8_3:18028633-18028652 | Msa1280090:intron | 45.0% | |
| !! | TGCTCTCACTTTTACACCTG+AGG | - | chr8_3:18028965-18028984 | Msa1280090:intron | 45.0% |
| TACAATGAAGAGGAGGAGAC+TGG | - | chr8_3:18029348-18029367 | Msa1280090:intron | 45.0% | |
| ACTCAAAGAAAGATGCCTCG+TGG | - | chr8_3:18027575-18027594 | Msa1280090:three_prime_UTR | 45.0% | |
| GATCCTTAGTTACAGTGCAC+AGG | - | chr8_3:18028087-18028106 | Msa1280090:CDS | 45.0% | |
| !! | CACAAGAGTGCTGTTCAAGA+AGG | - | chr8_3:18028112-18028131 | Msa1280090:CDS | 45.0% |
| GAGCGAGTAAGTGTTAAAGG+TGG | - | chr8_3:18028633-18028652 | Msa1280090:intron | 45.0% | |
| !! | TGCTCTCACTTTTACACCTG+AGG | - | chr8_3:18028965-18028984 | Msa1280090:intron | 45.0% |
| TACAATGAAGAGGAGGAGAC+TGG | - | chr8_3:18029348-18029367 | Msa1280090:intron | 45.0% | |
| GCTCCTGTGCACTGTAACTA+AGG | + | chr8_3:18028093-18028112 | None:intergenic | 50.0% | |
| GTGCTGGATCTAACCCACAA+TGG | - | chr8_3:18028229-18028248 | Msa1280090:intron | 50.0% | |
| ! | ACACCTAAAGGAGGGCACAA+AGG | - | chr8_3:18028706-18028725 | Msa1280090:CDS | 50.0% |
| ! | CACCTAAAGGAGGGCACAAA+GGG | - | chr8_3:18028707-18028726 | Msa1280090:CDS | 50.0% |
| ! | ACCTAAAGGAGGGCACAAAG+GGG | - | chr8_3:18028708-18028727 | Msa1280090:CDS | 50.0% |
| GATTTGAACTGCGTCCCTTG+AGG | - | chr8_3:18028771-18028790 | Msa1280090:intron | 50.0% | |
| AATGAAGAGGAGGAGACTGG+TGG | - | chr8_3:18029351-18029370 | Msa1280090:intron | 50.0% | |
| GCTCCTGTGCACTGTAACTA+AGG | + | chr8_3:18028093-18028112 | None:intergenic | 50.0% | |
| GTGCTGGATCTAACCCACAA+TGG | - | chr8_3:18028229-18028248 | Msa1280090:intron | 50.0% | |
| ! | ACACCTAAAGGAGGGCACAA+AGG | - | chr8_3:18028706-18028725 | Msa1280090:CDS | 50.0% |
| ! | CACCTAAAGGAGGGCACAAA+GGG | - | chr8_3:18028707-18028726 | Msa1280090:CDS | 50.0% |
| ! | ACCTAAAGGAGGGCACAAAG+GGG | - | chr8_3:18028708-18028727 | Msa1280090:CDS | 50.0% |
| GATTTGAACTGCGTCCCTTG+AGG | - | chr8_3:18028771-18028790 | Msa1280090:intron | 50.0% | |
| AATGAAGAGGAGGAGACTGG+TGG | - | chr8_3:18029351-18029370 | Msa1280090:intron | 50.0% | |
| AAGAGGAGGAGACTGGTGGA+TGG | - | chr8_3:18029355-18029374 | Msa1280090:intron | 55.0% | |
| AAGAGGAGGAGACTGGTGGA+TGG | - | chr8_3:18029355-18029374 | Msa1280090:intron | 55.0% | |
| GCCCCTTTGTGCCCTCCTTT+AGG | + | chr8_3:18028712-18028731 | None:intergenic | 60.0% | |
| GCCCCTTTGTGCCCTCCTTT+AGG | + | chr8_3:18028712-18028731 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 18027378 | 18029634 | 18027378 | ID=Msa1280090;Name=Msa1280090 |
| chr8_3 | mRNA | 18027378 | 18029634 | 18027378 | ID=Msa1280090-mRNA-1;Parent=Msa1280090;Name=Msa1280090-mRNA-1;_AED=0.32;_eAED=0.32;_QI=209|1|1|1|1|1|5|233|148 |
| chr8_3 | exon | 18027378 | 18027682 | 18027378 | ID=Msa1280090-mRNA-1:exon:6890;Parent=Msa1280090-mRNA-1 |
| chr8_3 | exon | 18028026 | 18028140 | 18028026 | ID=Msa1280090-mRNA-1:exon:6889;Parent=Msa1280090-mRNA-1 |
| chr8_3 | exon | 18028657 | 18028783 | 18028657 | ID=Msa1280090-mRNA-1:exon:6888;Parent=Msa1280090-mRNA-1 |
| chr8_3 | exon | 18028879 | 18028944 | 18028879 | ID=Msa1280090-mRNA-1:exon:6887;Parent=Msa1280090-mRNA-1 |
| chr8_3 | exon | 18029359 | 18029634 | 18029359 | ID=Msa1280090-mRNA-1:exon:6886;Parent=Msa1280090-mRNA-1 |
| chr8_3 | five_prime_UTR | 18029426 | 18029634 | 18029426 | ID=Msa1280090-mRNA-1:five_prime_utr;Parent=Msa1280090-mRNA-1 |
| chr8_3 | CDS | 18029359 | 18029425 | 18029359 | ID=Msa1280090-mRNA-1:cds;Parent=Msa1280090-mRNA-1 |
| chr8_3 | CDS | 18028879 | 18028944 | 18028879 | ID=Msa1280090-mRNA-1:cds;Parent=Msa1280090-mRNA-1 |
| chr8_3 | CDS | 18028657 | 18028783 | 18028657 | ID=Msa1280090-mRNA-1:cds;Parent=Msa1280090-mRNA-1 |
| chr8_3 | CDS | 18028026 | 18028140 | 18028026 | ID=Msa1280090-mRNA-1:cds;Parent=Msa1280090-mRNA-1 |
| chr8_3 | CDS | 18027611 | 18027682 | 18027611 | ID=Msa1280090-mRNA-1:cds;Parent=Msa1280090-mRNA-1 |
| chr8_3 | three_prime_UTR | 18027378 | 18027610 | 18027378 | ID=Msa1280090-mRNA-1:three_prime_utr;Parent=Msa1280090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
