Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011840 | XP_013466508.1 | 96.354 | 192 | 7 | 0 | 1 | 192 | 1 | 192 | 2.14e-129 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011840 | sp|Q6NLC8|Y1648_ARATH | 49.432 | 176 | 75 | 4 | 1 | 163 | 1 | 175 | 2.25e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011840 | Msa0053860 | 0.814937 | 1.194640e-51 | -8.615850e-47 |
| Msa0011840 | Msa0060670 | 0.841671 | 4.126114e-58 | -8.615850e-47 |
| Msa0011840 | Msa0060730 | -0.801058 | 1.076895e-48 | -8.615850e-47 |
| Msa0011840 | Msa0076290 | 0.814404 | 1.567711e-51 | -8.615850e-47 |
| Msa0011840 | Msa0099700 | 0.811855 | 5.681774e-51 | -8.615850e-47 |
| Msa0011840 | Msa0105410 | 0.906985 | 8.256638e-81 | -8.615850e-47 |
| Msa0011840 | Msa0106710 | 0.800397 | 1.468894e-48 | -8.615850e-47 |
| Msa0011840 | Msa0163510 | 0.814742 | 1.319648e-51 | -8.615850e-47 |
| Msa0011840 | Msa0200990 | 0.801321 | 9.513480e-49 | -8.615850e-47 |
| Msa0011840 | Msa0217060 | 0.802073 | 6.669197e-49 | -8.615850e-47 |
| Msa0011840 | Msa0251710 | 0.809379 | 1.948230e-50 | -8.615850e-47 |
| Msa0011840 | Msa0278570 | 0.804508 | 2.088458e-49 | -8.615850e-47 |
| Msa0011840 | Msa0304570 | 0.814770 | 1.300467e-51 | -8.615850e-47 |
| Msa0011840 | Msa0304680 | 0.802053 | 6.732951e-49 | -8.615850e-47 |
| Msa0011840 | Msa0394120 | 0.807424 | 5.090115e-50 | -8.615850e-47 |
| Msa0011840 | Msa0432160 | 0.801707 | 7.931102e-49 | -8.615850e-47 |
| Msa0011840 | Msa0476680 | 0.807036 | 6.148416e-50 | -8.615850e-47 |
| Msa0011840 | Msa0481630 | 0.808533 | 2.955452e-50 | -8.615850e-47 |
| Msa0011840 | Msa0485240 | 0.804968 | 1.674176e-49 | -8.615850e-47 |
| Msa0011840 | Msa0521010 | 0.800977 | 1.119071e-48 | -8.615850e-47 |
| Msa0011840 | Msa0549890 | 0.809664 | 1.691944e-50 | -8.615850e-47 |
| Msa0011840 | Msa0646240 | 0.845582 | 3.711530e-59 | -8.615850e-47 |
| Msa0011840 | Msa0686000 | 0.807035 | 6.151249e-50 | -8.615850e-47 |
| Msa0011840 | Msa0702720 | 0.800323 | 1.521193e-48 | -8.615850e-47 |
| Msa0011840 | Msa0752600 | 0.800749 | 1.245520e-48 | -8.615850e-47 |
| Msa0011840 | Msa0822500 | 0.806315 | 8.731301e-50 | -8.615850e-47 |
| Msa0011840 | Msa0833530 | 0.812814 | 3.508365e-51 | -8.615850e-47 |
| Msa0011840 | Msa0870510 | 0.801086 | 1.062684e-48 | -8.615850e-47 |
| Msa0011840 | Msa0878220 | 0.807399 | 5.152618e-50 | -8.615850e-47 |
| Msa0011840 | Msa0992510 | 0.817302 | 3.538975e-52 | -8.615850e-47 |
| Msa0011840 | Msa1012710 | 0.838634 | 2.558869e-57 | -8.615850e-47 |
| Msa0011840 | Msa1012800 | 0.848525 | 5.797021e-60 | -8.615850e-47 |
| Msa0011840 | Msa1094410 | 0.832487 | 9.190095e-56 | -8.615850e-47 |
| Msa0011840 | Msa1129330 | 0.824364 | 8.403636e-54 | -8.615850e-47 |
| Msa0011840 | Msa1178580 | 0.812540 | 4.026882e-51 | -8.615850e-47 |
| Msa0011840 | Msa1184690 | 0.822370 | 2.456204e-53 | -8.615850e-47 |
| Msa0011840 | Msa1191180 | 0.817534 | 3.137051e-52 | -8.615850e-47 |
| Msa0011840 | Msa1238600 | 0.862835 | 3.823210e-64 | -8.615850e-47 |
| Msa0011840 | Msa1244500 | 0.815237 | 1.024656e-51 | -8.615850e-47 |
| Msa0011840 | Msa1255210 | 0.801398 | 9.173799e-49 | -8.615850e-47 |
| Msa0011840 | Msa1271130 | 0.820612 | 6.257496e-53 | -8.615850e-47 |
| Msa0011840 | Msa1276150 | 0.820193 | 7.807479e-53 | -8.615850e-47 |
| Msa0011840 | Msa1280090 | 0.806113 | 9.630858e-50 | -8.615850e-47 |
| Msa0011840 | Msa1295650 | 0.802710 | 4.930032e-49 | -8.615850e-47 |
| Msa0011840 | Msa1319560 | 0.816313 | 5.899197e-52 | -8.615850e-47 |
| Msa0011840 | Msa1345100 | 0.808225 | 3.438144e-50 | -8.615850e-47 |
| Msa0011840 | Msa1418240 | 0.804223 | 2.395199e-49 | -8.615850e-47 |
| Msa0011840 | Msa1419690 | 0.807193 | 5.695718e-50 | -8.615850e-47 |
| Msa0011840 | Msa1437730 | 0.801411 | 9.121254e-49 | -8.615850e-47 |
| Msa0011840 | Msa1442920 | 0.817430 | 3.311465e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011840 | MtrunA17_Chr1g0160291 | 96.354 | 192 | 7 | 0 | 1 | 192 | 1 | 192 | 1.96e-133 | 373 |
| Msa0011840 | MtrunA17_Chr4g0044361 | 70.286 | 175 | 44 | 4 | 1 | 170 | 1 | 172 | 3.23e-76 | 228 |
| Msa0011840 | MtrunA17_Chr5g0435091 | 53.488 | 172 | 70 | 4 | 1 | 164 | 1 | 170 | 1.02e-54 | 174 |
| Msa0011840 | MtrunA17_Chr3g0111521 | 49.239 | 197 | 85 | 4 | 1 | 182 | 1 | 197 | 7.19e-52 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011840 | AT2G01340.1 | 62.941 | 170 | 58 | 3 | 1 | 169 | 1 | 166 | 3.89e-63 | 196 |
| Msa0011840 | AT1G71015.1 | 56.970 | 165 | 65 | 3 | 1 | 163 | 1 | 161 | 4.94e-48 | 156 |
| Msa0011840 | AT1G71015.2 | 56.970 | 165 | 65 | 3 | 1 | 163 | 1 | 161 | 4.94e-48 | 156 |
| Msa0011840 | AT1G66480.1 | 49.432 | 176 | 75 | 4 | 1 | 163 | 1 | 175 | 2.29e-45 | 150 |
| Msa0011840 | AT5G37840.1 | 41.414 | 198 | 106 | 6 | 1 | 192 | 1 | 194 | 2.31e-38 | 132 |
Find 58 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATAAATTTCATTCATTT+TGG | 0.079557 | 1_1:-17768528 | None:intergenic |
| ATTTAGAACTACACACAAAA+TGG | 0.241565 | 1_1:-17765536 | None:intergenic |
| AATGAATTTGTCGTTGTTCC+GGG | 0.328031 | 1_1:-17765426 | None:intergenic |
| CTAATAATGGGAAATAGTTT+AGG | 0.332015 | 1_1:+17765560 | Msa0011840:exon |
| GTAGTTCTAAATTCTAATAA+TGG | 0.333570 | 1_1:+17765547 | Msa0011840:exon |
| TCTGAGGAAGTGAAGCATTA+TGG | 0.340674 | 1_1:+17765695 | Msa0011840:CDS |
| ACATGTAAATGTTGCACCTT+TGG | 0.345379 | 1_1:+17765387 | Msa0011840:five_prime_UTR |
| TAATGATAAGAAAATGAAAA+AGG | 0.345766 | 1_1:+17766066 | Msa0011840:CDS |
| AAATGAATTTGTCGTTGTTC+CGG | 0.347196 | 1_1:-17765427 | None:intergenic |
| CCCACCTCGAAGTCGTTCAT+TGG | 0.353620 | 1_1:-17765905 | None:intergenic |
| TCTTGTAACTCGACTTTCCT+TGG | 0.360185 | 1_1:-17765789 | None:intergenic |
| AACTTCTCAACATCTGCCTT+TGG | 0.375562 | 1_1:-17765974 | None:intergenic |
| CCTAACCTTGAAGCTAAACT+TGG | 0.379812 | 1_1:+17768463 | Msa0011840:CDS |
| CCAAGTTTAGCTTCAAGGTT+AGG | 0.386616 | 1_1:-17768463 | None:intergenic |
| TAGTTCTAAATTCTAATAAT+GGG | 0.396437 | 1_1:+17765548 | Msa0011840:exon |
| AACTCTTTGTGTGCTTCCAA+TGG | 0.426840 | 1_1:-17765731 | None:intergenic |
| GAAAGCCGGTGAAGTGCTTA+AGG | 0.427598 | 1_1:+17765646 | Msa0011840:CDS |
| GGGTTCCAAGTTTAGCTTCA+AGG | 0.434743 | 1_1:-17768468 | None:intergenic |
| GTTACAAGAAGGGTTCGTTC+GGG | 0.451959 | 1_1:+17765803 | Msa0011840:CDS |
| CTTGTAACTCGACTTTCCTT+GGG | 0.453744 | 1_1:-17765788 | None:intergenic |
| TGCAACATTTACATGTGAAT+TGG | 0.460428 | 1_1:-17765380 | None:intergenic |
| AGTTACAAGAAGGGTTCGTT+CGG | 0.464996 | 1_1:+17765802 | Msa0011840:CDS |
| TTTAGAACTACACACAAAAT+GGG | 0.476785 | 1_1:-17765535 | None:intergenic |
| AAGAAGAGTTGACGAATGGC+GGG | 0.488902 | 1_1:+17765930 | Msa0011840:CDS |
| AGCACTTCACCGGCTTTCAC+CGG | 0.493553 | 1_1:-17765641 | None:intergenic |
| GATTCTAACACGACAAGACC+AGG | 0.515467 | 1_1:-17765674 | None:intergenic |
| AACATTTACATGTGAATTGG+TGG | 0.516659 | 1_1:-17765377 | None:intergenic |
| GTGATCCTTAAGCACTTCAC+CGG | 0.518764 | 1_1:-17765651 | None:intergenic |
| ACAAAGGTGATGAAAATTGA+TGG | 0.530975 | 1_1:+17765596 | Msa0011840:CDS |
| TCATTGGTTTCATAATCGTA+AGG | 0.535977 | 1_1:-17765889 | None:intergenic |
| AGTTGACGAATGGCGGGGTG+AGG | 0.542180 | 1_1:+17765936 | Msa0011840:CDS |
| CTAAAGACACCGGTGAAAGC+CGG | 0.542691 | 1_1:+17765632 | Msa0011840:CDS |
| GGTTCTTTGTGAGCATTACC+CGG | 0.543928 | 1_1:+17765408 | Msa0011840:five_prime_UTR |
| TGGAAGGGTAGCAGAGGAGT+TGG | 0.545103 | 1_1:+17766097 | Msa0011840:CDS |
| GAAACCAATGAACGACTTCG+AGG | 0.561915 | 1_1:+17765901 | Msa0011840:CDS |
| AGGAAAGTCGAGTTACAAGA+AGG | 0.564448 | 1_1:+17765792 | Msa0011840:CDS |
| ATAATGGGAAATAGTTTAGG+TGG | 0.567511 | 1_1:+17765563 | Msa0011840:exon |
| GAAGATTATGAGTCTTTGCA+TGG | 0.572826 | 1_1:+17766033 | Msa0011840:CDS |
| TGGAGTGAGAGCGAAGCCAT+TGG | 0.574068 | 1_1:+17765715 | Msa0011840:CDS |
| AAAGAAGAGTTGACGAATGG+CGG | 0.576273 | 1_1:+17765929 | Msa0011840:CDS |
| TCTTGTCGTGTTAGAATCTG+AGG | 0.605641 | 1_1:+17765679 | Msa0011840:CDS |
| ACCAATGAACGACTTCGAGG+TGG | 0.613366 | 1_1:+17765904 | Msa0011840:CDS |
| GATGCAAAGTAGTAAAGATG+AGG | 0.620365 | 1_1:+17765997 | Msa0011840:CDS |
| AGAGTCTGTCTTTAGCTCGA+AGG | 0.625951 | 1_1:+17765855 | Msa0011840:CDS |
| CCAATGAACGACTTCGAGGT+GGG | 0.626451 | 1_1:+17765905 | Msa0011840:CDS |
| TTACAAGAAGGGTTCGTTCG+GGG | 0.631852 | 1_1:+17765804 | Msa0011840:CDS |
| TAATGCTCACAAAGAACCAA+AGG | 0.641241 | 1_1:-17765403 | None:intergenic |
| CAGCAAGTCAGCAACAGTGA+GGG | 0.643518 | 1_1:-17768488 | None:intergenic |
| ATGCATTGGAAGGGTAGCAG+AGG | 0.643927 | 1_1:+17766091 | Msa0011840:CDS |
| GGAAAGTCGAGTTACAAGAA+GGG | 0.646808 | 1_1:+17765793 | Msa0011840:CDS |
| GGAAAAGAAGAGTTGACGAA+TGG | 0.648290 | 1_1:+17765926 | Msa0011840:CDS |
| AGAAGAGTTGACGAATGGCG+GGG | 0.660824 | 1_1:+17765931 | Msa0011840:CDS |
| GTTGAAAATGAGACTTCCAA+AGG | 0.662765 | 1_1:+17765958 | Msa0011840:CDS |
| GCAGCAAGTCAGCAACAGTG+AGG | 0.664408 | 1_1:-17768489 | None:intergenic |
| AACATTCAAGCTAAAGACAC+CGG | 0.668856 | 1_1:+17765622 | Msa0011840:CDS |
| ATTCTAACACGACAAGACCA+GGG | 0.714691 | 1_1:-17765673 | None:intergenic |
| GTGGTTGTGAGACAATGACA+TGG | 0.755810 | 1_1:-17765358 | None:intergenic |
| GAAGTGCTTAAGGATCACCC+TGG | 0.784850 | 1_1:+17765656 | Msa0011840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATTAATTTTATAATT+TGG | + | chr1_1:17766344-17766363 | Msa0011840:intron | 0.0% |
| !! | TATTTATTTATTTATTAAAT+TGG | + | chr1_1:17767832-17767851 | Msa0011840:intron | 0.0% |
| !! | ATTTATTTATTTATTAAATT+GGG | + | chr1_1:17767833-17767852 | Msa0011840:intron | 0.0% |
| !!! | AATTAATTTTATAATTTGGT+TGG | + | chr1_1:17766348-17766367 | Msa0011840:intron | 10.0% |
| !!! | ATTTTTTTTACAAATACATT+AGG | - | chr1_1:17766720-17766739 | None:intergenic | 10.0% |
| !! | CTAATTATTATATTTGAAAA+AGG | - | chr1_1:17767800-17767819 | None:intergenic | 10.0% |
| !!! | TAGTTCTAAATTCTAATAAT+GGG | + | chr1_1:17765548-17765567 | Msa0011840:exon | 15.0% |
| !! | TAATGATAAGAAAATGAAAA+AGG | + | chr1_1:17766066-17766085 | Msa0011840:CDS | 15.0% |
| !! | GCATATTATTATTGTTTAAT+GGG | - | chr1_1:17767129-17767148 | None:intergenic | 15.0% |
| !! | AGCATATTATTATTGTTTAA+TGG | - | chr1_1:17767130-17767149 | None:intergenic | 15.0% |
| !!! | AAAATTGTACATTTTCAAAT+GGG | - | chr1_1:17767414-17767433 | None:intergenic | 15.0% |
| !! | TGTATATTAGTAGAAAAATA+TGG | - | chr1_1:17767454-17767473 | None:intergenic | 15.0% |
| !! | TTAAATTATACAAAACTTGT+AGG | - | chr1_1:17767658-17767677 | None:intergenic | 15.0% |
| !! | TATAGAATAATAATAATTCG+TGG | - | chr1_1:17767771-17767790 | None:intergenic | 15.0% |
| !!! | GTAGTTCTAAATTCTAATAA+TGG | + | chr1_1:17765547-17765566 | Msa0011840:exon | 20.0% |
| !!! | TTCATTTTGAGAAAAGAAAA+CGG | + | chr1_1:17766175-17766194 | Msa0011840:intron | 20.0% |
| !!! | TCAAAATGGAAAATAACTTT+TGG | - | chr1_1:17766208-17766227 | None:intergenic | 20.0% |
| !! | AAACAAGTTTAGTGTTTAAA+AGG | + | chr1_1:17766236-17766255 | Msa0011840:intron | 20.0% |
| !! | TAATCAAATGATTCAACATT+AGG | - | chr1_1:17766327-17766346 | None:intergenic | 20.0% |
| !! | ATGATGAAATACATAATATG+AGG | + | chr1_1:17766516-17766535 | Msa0011840:intron | 20.0% |
| !!! | ATGTAGTTTTAAATAACCAA+TGG | + | chr1_1:17766674-17766693 | Msa0011840:intron | 20.0% |
| !!! | TGTAGTTTTAAATAACCAAT+GGG | + | chr1_1:17766675-17766694 | Msa0011840:intron | 20.0% |
| !! | TAGATAGTTTGAATAAAATG+AGG | - | chr1_1:17766907-17766926 | None:intergenic | 20.0% |
| !!! | ATATTTTTCTCATGAAATGA+TGG | - | chr1_1:17767052-17767071 | None:intergenic | 20.0% |
| !! | GTAATTTATTAGATCAACAA+TGG | + | chr1_1:17767198-17767217 | Msa0011840:intron | 20.0% |
| !!! | CAAAATTGTACATTTTCAAA+TGG | - | chr1_1:17767415-17767434 | None:intergenic | 20.0% |
| !!! | TATCTTGATTCTTTTATCAA+TGG | + | chr1_1:17767706-17767725 | Msa0011840:intron | 20.0% |
| !!! | ATCTTGATTCTTTTATCAAT+GGG | + | chr1_1:17767707-17767726 | Msa0011840:intron | 20.0% |
| !!! | ATTGTCAAAAAAAGTATCTA+TGG | - | chr1_1:17768190-17768209 | None:intergenic | 20.0% |
| !! | TGCTATTATTTATGAAAGAA+TGG | + | chr1_1:17768230-17768249 | Msa0011840:intron | 20.0% |
| !! | GCTATTATTTATGAAAGAAT+GGG | + | chr1_1:17768231-17768250 | Msa0011840:intron | 20.0% |
| !! | TTTAGAACTACACACAAAAT+GGG | - | chr1_1:17765538-17765557 | None:intergenic | 25.0% |
| !! | ATTTAGAACTACACACAAAA+TGG | - | chr1_1:17765539-17765558 | None:intergenic | 25.0% |
| !! | CTAATAATGGGAAATAGTTT+AGG | + | chr1_1:17765560-17765579 | Msa0011840:exon | 25.0% |
| !! | ACAAGAAAATAGAGTCTTTT+TGG | - | chr1_1:17765761-17765780 | None:intergenic | 25.0% |
| !! | AAAAAGACTCTATTTTCTTG+TGG | + | chr1_1:17765760-17765779 | Msa0011840:CDS | 25.0% |
| ! | AAATGAAAAAGGAAATGCAT+TGG | + | chr1_1:17766077-17766096 | Msa0011840:CDS | 25.0% |
| ! | TGAATACAAAAAAGCTTATG+AGG | + | chr1_1:17766120-17766139 | Msa0011840:CDS | 25.0% |
| !! | TTGTTTAGTCTTTCTCAAAA+TGG | - | chr1_1:17766222-17766241 | None:intergenic | 25.0% |
| !! | AACGTTTTCATACAAGTTTT+TGG | + | chr1_1:17766270-17766289 | Msa0011840:intron | 25.0% |
| ! | TGAAATACATAATATGAGGA+TGG | + | chr1_1:17766520-17766539 | Msa0011840:intron | 25.0% |
| !! | GACATATTCTGATGAAATTT+TGG | + | chr1_1:17767251-17767270 | Msa0011840:intron | 25.0% |
| ! | AAATATGGTCAAAGTAAGTT+AGG | - | chr1_1:17767439-17767458 | None:intergenic | 25.0% |
| ! | TTAAGCTCAAAATTATGCAT+TGG | + | chr1_1:17767575-17767594 | Msa0011840:intron | 25.0% |
| ! | TTGATGAGATTTCAATTTGT+TGG | + | chr1_1:17768142-17768161 | Msa0011840:intron | 25.0% |
| ! | ATTCCATAAACAATCATGTA+TGG | + | chr1_1:17768269-17768288 | Msa0011840:intron | 25.0% |
| ! | AATCCATACATGATTGTTTA+TGG | - | chr1_1:17768275-17768294 | None:intergenic | 25.0% |
| ! | GGATTATCTAAACAATTTGT+AGG | + | chr1_1:17768290-17768309 | Msa0011840:intron | 25.0% |
| ! | CCAAAAACAAACATATTAGT+AGG | - | chr1_1:17768367-17768386 | None:intergenic | 25.0% |
| !!! | CCTACTAATATGTTTGTTTT+TGG | + | chr1_1:17768364-17768383 | Msa0011840:intron | 25.0% |
| AACATTTACATGTGAATTGG+TGG | - | chr1_1:17765380-17765399 | None:intergenic | 30.0% | |
| TGCAACATTTACATGTGAAT+TGG | - | chr1_1:17765383-17765402 | None:intergenic | 30.0% | |
| AAATGAATTTGTCGTTGTTC+CGG | - | chr1_1:17765430-17765449 | None:intergenic | 30.0% | |
| !!! | TGGGAACAAAATTTTGAGTT+TGG | - | chr1_1:17765519-17765538 | None:intergenic | 30.0% |
| ! | ATAATGGGAAATAGTTTAGG+TGG | + | chr1_1:17765563-17765582 | Msa0011840:exon | 30.0% |
| AGGTGGAAAAAAATCTACAA+AGG | + | chr1_1:17765580-17765599 | Msa0011840:CDS | 30.0% | |
| ACAAAGGTGATGAAAATTGA+TGG | + | chr1_1:17765596-17765615 | Msa0011840:CDS | 30.0% | |
| !! | TCATTGGTTTCATAATCGTA+AGG | - | chr1_1:17765892-17765911 | None:intergenic | 30.0% |
| AAAAAGGAAATGCATTGGAA+GGG | + | chr1_1:17766082-17766101 | Msa0011840:CDS | 30.0% | |
| !! | CAAGTTTTTGGATAAGTAGT+TGG | + | chr1_1:17766282-17766301 | Msa0011840:intron | 30.0% |
| ! | ATAAGTAGTTGGAAGCATAT+AGG | + | chr1_1:17766293-17766312 | Msa0011840:intron | 30.0% |
| ! | TAAGTAGTTGGAAGCATATA+GGG | + | chr1_1:17766294-17766313 | Msa0011840:intron | 30.0% |
| ! | CTTTTTAACCTCTCTTTTAC+CGG | + | chr1_1:17767010-17767029 | Msa0011840:intron | 30.0% |
| ! | AATTTTATCCGGTAAAAGAG+AGG | - | chr1_1:17767021-17767040 | None:intergenic | 30.0% |
| GGTCAAATTATGTAAGATCA+TGG | - | chr1_1:17767311-17767330 | None:intergenic | 30.0% | |
| AATTTGACCATCATTTAGAG+AGG | + | chr1_1:17767322-17767341 | Msa0011840:intron | 30.0% | |
| ATTTGACCATCATTTAGAGA+GGG | + | chr1_1:17767323-17767342 | Msa0011840:intron | 30.0% | |
| TCAACTGTGTCATGTATTAT+GGG | + | chr1_1:17767612-17767631 | Msa0011840:intron | 30.0% | |
| !!! | TTTTTTTTTTGCTTTCGCAC+CGG | - | chr1_1:17767974-17767993 | None:intergenic | 30.0% |
| ATAAGAACCTGTAAAATGCA+GGG | - | chr1_1:17768039-17768058 | None:intergenic | 30.0% | |
| TATAAGAACCTGTAAAATGC+AGG | - | chr1_1:17768040-17768059 | None:intergenic | 30.0% | |
| AACTAACGACAGAAAAATAG+TGG | + | chr1_1:17768096-17768115 | Msa0011840:intron | 30.0% | |
| !! | AGTTTTATGCCAATCAATGA+AGG | + | chr1_1:17768417-17768436 | Msa0011840:intron | 30.0% |
| ACATGTAAATGTTGCACCTT+TGG | + | chr1_1:17765387-17765406 | Msa0011840:five_prime_UTR | 35.0% | |
| TAATGCTCACAAAGAACCAA+AGG | - | chr1_1:17765406-17765425 | None:intergenic | 35.0% | |
| AATGAATTTGTCGTTGTTCC+GGG | - | chr1_1:17765429-17765448 | None:intergenic | 35.0% | |
| AACATTCAAGCTAAAGACAC+CGG | + | chr1_1:17765622-17765641 | Msa0011840:CDS | 35.0% | |
| GTTGAAAATGAGACTTCCAA+AGG | + | chr1_1:17765958-17765977 | Msa0011840:CDS | 35.0% | |
| GATGCAAAGTAGTAAAGATG+AGG | + | chr1_1:17765997-17766016 | Msa0011840:CDS | 35.0% | |
| GAAGATTATGAGTCTTTGCA+TGG | + | chr1_1:17766033-17766052 | Msa0011840:CDS | 35.0% | |
| GAAAAAGGAAATGCATTGGA+AGG | + | chr1_1:17766081-17766100 | Msa0011840:CDS | 35.0% | |
| AATGGACGCTAATCATTAAG+AGG | - | chr1_1:17766411-17766430 | None:intergenic | 35.0% | |
| CATTTCTCCTTAGAACAAGA+GGG | + | chr1_1:17766427-17766446 | Msa0011840:intron | 35.0% | |
| CATGTAATCATGTATCCCAT+TGG | - | chr1_1:17766693-17766712 | None:intergenic | 35.0% | |
| TACCTCAAAGTAACTAACCA+AGG | + | chr1_1:17766749-17766768 | Msa0011840:intron | 35.0% | |
| ACCTCAAAGTAACTAACCAA+GGG | + | chr1_1:17766750-17766769 | Msa0011840:intron | 35.0% | |
| TAAAGTCGATATTAGTCCCT+TGG | - | chr1_1:17766769-17766788 | None:intergenic | 35.0% | |
| !! | AAGGGACTAATATCGACTTT+AGG | + | chr1_1:17766768-17766787 | Msa0011840:intron | 35.0% |
| !! | AGGGACTAATATCGACTTTA+GGG | + | chr1_1:17766769-17766788 | Msa0011840:intron | 35.0% |
| ACTAGAACTTCTTCTCTTAG+AGG | + | chr1_1:17766826-17766845 | Msa0011840:intron | 35.0% | |
| ! | TGGCACAACACAATTTTATC+CGG | - | chr1_1:17767032-17767051 | None:intergenic | 35.0% |
| TTCAAATGGGTCATCTATTG+CGG | - | chr1_1:17767401-17767420 | None:intergenic | 35.0% | |
| ! | TATGCATTGGTATGCGTAAT+AGG | + | chr1_1:17767588-17767607 | Msa0011840:intron | 35.0% |
| ! | ATGCATTGGTATGCGTAATA+GGG | + | chr1_1:17767589-17767608 | Msa0011840:intron | 35.0% |
| GTCAACTGTGTCATGTATTA+TGG | + | chr1_1:17767611-17767630 | Msa0011840:intron | 35.0% | |
| ! | TAGTGGATAACAGTACTATG+AGG | + | chr1_1:17768113-17768132 | Msa0011840:intron | 35.0% |
| AGTGGATAACAGTACTATGA+GGG | + | chr1_1:17768114-17768133 | Msa0011840:intron | 35.0% | |
| GAACAACTTCCTTCATTGAT+TGG | - | chr1_1:17768429-17768448 | None:intergenic | 35.0% | |
| ATTCTAACACGACAAGACCA+GGG | - | chr1_1:17765676-17765695 | None:intergenic | 40.0% | |
| TCTTGTCGTGTTAGAATCTG+AGG | + | chr1_1:17765679-17765698 | Msa0011840:CDS | 40.0% | |
| ! | TCTGAGGAAGTGAAGCATTA+TGG | + | chr1_1:17765695-17765714 | Msa0011840:CDS | 40.0% |
| AACTCTTTGTGTGCTTCCAA+TGG | - | chr1_1:17765734-17765753 | None:intergenic | 40.0% | |
| ! | TTTTCTTGTGGAACTTCCCA+AGG | + | chr1_1:17765772-17765791 | Msa0011840:CDS | 40.0% |
| CTTGTAACTCGACTTTCCTT+GGG | - | chr1_1:17765791-17765810 | None:intergenic | 40.0% | |
| TCTTGTAACTCGACTTTCCT+TGG | - | chr1_1:17765792-17765811 | None:intergenic | 40.0% | |
| AGGAAAGTCGAGTTACAAGA+AGG | + | chr1_1:17765792-17765811 | Msa0011840:CDS | 40.0% | |
| GGAAAGTCGAGTTACAAGAA+GGG | + | chr1_1:17765793-17765812 | Msa0011840:CDS | 40.0% | |
| AGTTACAAGAAGGGTTCGTT+CGG | + | chr1_1:17765802-17765821 | Msa0011840:CDS | 40.0% | |
| GGAAAAGAAGAGTTGACGAA+TGG | + | chr1_1:17765926-17765945 | Msa0011840:CDS | 40.0% | |
| AAAGAAGAGTTGACGAATGG+CGG | + | chr1_1:17765929-17765948 | Msa0011840:CDS | 40.0% | |
| AACTTCTCAACATCTGCCTT+TGG | - | chr1_1:17765977-17765996 | None:intergenic | 40.0% | |
| !! | CCTCTTGTTCTAAGGAGAAA+TGG | - | chr1_1:17766429-17766448 | None:intergenic | 40.0% |
| CCATTTCTCCTTAGAACAAG+AGG | + | chr1_1:17766426-17766445 | Msa0011840:intron | 40.0% | |
| ! | TCCCTTGGTTAGTTACTTTG+AGG | - | chr1_1:17766754-17766773 | None:intergenic | 40.0% |
| GGTTGTCTCAAGATAAGCAA+GGG | - | chr1_1:17767108-17767127 | None:intergenic | 40.0% | |
| TCAAATGGGTCATCTATTGC+GGG | - | chr1_1:17767400-17767419 | None:intergenic | 40.0% | |
| CTGTGTCATGTATTATGGGA+CGG | + | chr1_1:17767616-17767635 | Msa0011840:intron | 40.0% | |
| !! | AATATAGTGGGCGACTAATC+CGG | - | chr1_1:17767938-17767957 | None:intergenic | 40.0% |
| ! | GACAATACCCTGCATTTTAC+AGG | + | chr1_1:17768029-17768048 | Msa0011840:intron | 40.0% |
| GGAAGAATCTTATCATCTGC+AGG | - | chr1_1:17768169-17768188 | None:intergenic | 40.0% | |
| ! | CCAAGTTTAGCTTCAAGGTT+AGG | - | chr1_1:17768466-17768485 | None:intergenic | 40.0% |
| CCTAACCTTGAAGCTAAACT+TGG | + | chr1_1:17768463-17768482 | Msa0011840:CDS | 40.0% | |
| GTGGTTGTGAGACAATGACA+TGG | - | chr1_1:17765361-17765380 | None:intergenic | 45.0% | |
| GGTTCTTTGTGAGCATTACC+CGG | + | chr1_1:17765408-17765427 | Msa0011840:five_prime_UTR | 45.0% | |
| GTGATCCTTAAGCACTTCAC+CGG | - | chr1_1:17765654-17765673 | None:intergenic | 45.0% | |
| GATTCTAACACGACAAGACC+AGG | - | chr1_1:17765677-17765696 | None:intergenic | 45.0% | |
| GTTACAAGAAGGGTTCGTTC+GGG | + | chr1_1:17765803-17765822 | Msa0011840:CDS | 45.0% | |
| TTACAAGAAGGGTTCGTTCG+GGG | + | chr1_1:17765804-17765823 | Msa0011840:CDS | 45.0% | |
| ! | AGAGTCTGTCTTTAGCTCGA+AGG | + | chr1_1:17765855-17765874 | Msa0011840:CDS | 45.0% |
| GAAACCAATGAACGACTTCG+AGG | + | chr1_1:17765901-17765920 | Msa0011840:CDS | 45.0% | |
| AAGAAGAGTTGACGAATGGC+GGG | + | chr1_1:17765930-17765949 | Msa0011840:CDS | 45.0% | |
| GTCTCAACCCTCTTGTTCTA+AGG | - | chr1_1:17766437-17766456 | None:intergenic | 45.0% | |
| CTCAAGATAAGCAAGGGTCT+TGG | - | chr1_1:17767102-17767121 | None:intergenic | 45.0% | |
| GGGTTGTCTCAAGATAAGCA+AGG | - | chr1_1:17767109-17767128 | None:intergenic | 45.0% | |
| ACCATCATTTAGAGAGGGAG+AGG | + | chr1_1:17767328-17767347 | Msa0011840:intron | 45.0% | |
| TCCTCTCCCTCTCTAAATGA+TGG | - | chr1_1:17767332-17767351 | None:intergenic | 45.0% | |
| ATTTAGAGAGGGAGAGGATG+AGG | + | chr1_1:17767334-17767353 | Msa0011840:intron | 45.0% | |
| GTCATCTATTGCGGGACAAA+GGG | - | chr1_1:17767392-17767411 | None:intergenic | 45.0% | |
| TGTCATGTATTATGGGACGG+AGG | + | chr1_1:17767619-17767638 | Msa0011840:intron | 45.0% | |
| GTCATGTATTATGGGACGGA+GGG | + | chr1_1:17767620-17767639 | Msa0011840:intron | 45.0% | |
| !! | GGATTAGTCGCCCACTATAT+TGG | + | chr1_1:17767937-17767956 | Msa0011840:intron | 45.0% |
| TTAGTCGCCCACTATATTGG+TGG | + | chr1_1:17767940-17767959 | Msa0011840:intron | 45.0% | |
| TAGTCGCCCACTATATTGGT+GGG | + | chr1_1:17767941-17767960 | Msa0011840:intron | 45.0% | |
| TTCCGACCCACCAATATAGT+GGG | - | chr1_1:17767950-17767969 | None:intergenic | 45.0% | |
| TTTCCGACCCACCAATATAG+TGG | - | chr1_1:17767951-17767970 | None:intergenic | 45.0% | |
| ! | TATATTGGTGGGTCGGAAAC+CGG | + | chr1_1:17767952-17767971 | Msa0011840:intron | 45.0% |
| ! | GGGTTCCAAGTTTAGCTTCA+AGG | - | chr1_1:17768471-17768490 | None:intergenic | 45.0% |
| !! | TTTTGGGAGATAGCTAGCAC+TGG | - | chr1_1:17768514-17768533 | None:intergenic | 45.0% |
| !!! | TTCATTATTTTTATTTTAAA+TGG | - | chr1_1:17766945-17766964 | None:intergenic | 5.0% |
| !!! | TTGTTAAAATAATTTTTAAA+TGG | + | chr1_1:17767678-17767697 | Msa0011840:intron | 5.0% |
| !! | AATAAATAAATAAATAAACA+GGG | - | chr1_1:17767824-17767843 | None:intergenic | 5.0% |
| !! | AAATAAATAAATAAATAAAC+AGG | - | chr1_1:17767825-17767844 | None:intergenic | 5.0% |
| CTAAAGACACCGGTGAAAGC+CGG | + | chr1_1:17765632-17765651 | Msa0011840:CDS | 50.0% | |
| ! | GAAAGCCGGTGAAGTGCTTA+AGG | + | chr1_1:17765646-17765665 | Msa0011840:CDS | 50.0% |
| ! | GAAGTGCTTAAGGATCACCC+TGG | + | chr1_1:17765656-17765675 | Msa0011840:CDS | 50.0% |
| ACCAATGAACGACTTCGAGG+TGG | + | chr1_1:17765904-17765923 | Msa0011840:CDS | 50.0% | |
| CCAATGAACGACTTCGAGGT+GGG | + | chr1_1:17765905-17765924 | Msa0011840:CDS | 50.0% | |
| AGAAGAGTTGACGAATGGCG+GGG | + | chr1_1:17765931-17765950 | Msa0011840:CDS | 50.0% | |
| ATGCATTGGAAGGGTAGCAG+AGG | + | chr1_1:17766091-17766110 | Msa0011840:CDS | 50.0% | |
| GGTCATCTATTGCGGGACAA+AGG | - | chr1_1:17767393-17767412 | None:intergenic | 50.0% | |
| GTATGTCTCAACGCATGAGC+CGG | + | chr1_1:17767916-17767935 | Msa0011840:intron | 50.0% | |
| CAGCAAGTCAGCAACAGTGA+GGG | - | chr1_1:17768491-17768510 | None:intergenic | 50.0% | |
| !! | AGCACTTCACCGGCTTTCAC+CGG | - | chr1_1:17765644-17765663 | None:intergenic | 55.0% |
| TGGAGTGAGAGCGAAGCCAT+TGG | + | chr1_1:17765715-17765734 | Msa0011840:CDS | 55.0% | |
| CCCACCTCGAAGTCGTTCAT+TGG | - | chr1_1:17765908-17765927 | None:intergenic | 55.0% | |
| TGGAAGGGTAGCAGAGGAGT+TGG | + | chr1_1:17766097-17766116 | Msa0011840:CDS | 55.0% | |
| TGAGGATGGCTGAGTGTGCT+AGG | + | chr1_1:17766534-17766553 | Msa0011840:intron | 55.0% | |
| AGAGGGAGAGGATGAGGATG+AGG | + | chr1_1:17767340-17767359 | Msa0011840:intron | 55.0% | |
| ! | CGCCCACTATATTGGTGGGT+CGG | + | chr1_1:17767945-17767964 | Msa0011840:intron | 55.0% |
| GCAGCAAGTCAGCAACAGTG+AGG | - | chr1_1:17768492-17768511 | None:intergenic | 55.0% | |
| ! | AGTTGACGAATGGCGGGGTG+AGG | + | chr1_1:17765936-17765955 | Msa0011840:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 17765347 | 17768540 | 17765347 | ID=Msa0011840;Name=Msa0011840 |
| chr1_1 | mRNA | 17765347 | 17768540 | 17765347 | ID=Msa0011840-mRNA-1;Parent=Msa0011840;Name=Msa0011840-mRNA-1;_AED=0.16;_eAED=0.24;_QI=219|0|0.5|1|1|1|2|0|218 |
| chr1_1 | exon | 17765347 | 17766141 | 17765347 | ID=Msa0011840-mRNA-1:exon:6477;Parent=Msa0011840-mRNA-1 |
| chr1_1 | exon | 17768460 | 17768540 | 17768460 | ID=Msa0011840-mRNA-1:exon:6478;Parent=Msa0011840-mRNA-1 |
| chr1_1 | five_prime_UTR | 17765347 | 17765565 | 17765347 | ID=Msa0011840-mRNA-1:five_prime_utr;Parent=Msa0011840-mRNA-1 |
| chr1_1 | CDS | 17765566 | 17766141 | 17765566 | ID=Msa0011840-mRNA-1:cds;Parent=Msa0011840-mRNA-1 |
| chr1_1 | CDS | 17768460 | 17768540 | 17768460 | ID=Msa0011840-mRNA-1:cds;Parent=Msa0011840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
