Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060670 | sp|Q6NLC8|Y1648_ARATH | 50.000 | 176 | 74 | 4 | 1 | 163 | 1 | 175 | 5.95e-45 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060670 | A0A072VEV4 | 96.875 | 192 | 6 | 0 | 1 | 192 | 1 | 192 | 3.33e-130 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011840 | Msa0060670 | 0.841671 | 4.126114e-58 | -8.615850e-47 |
| Msa0030700 | Msa0060670 | 0.804478 | 2.119155e-49 | -8.615850e-47 |
| Msa0046870 | Msa0060670 | 0.810451 | 1.145037e-50 | -8.615850e-47 |
| Msa0060670 | Msa0105410 | 0.905096 | 6.157112e-80 | -8.615850e-47 |
| Msa0060670 | Msa0187540 | 0.819727 | 9.975780e-53 | -8.615850e-47 |
| Msa0060670 | Msa0210610 | 0.842187 | 3.013907e-58 | -8.615850e-47 |
| Msa0060670 | Msa0217060 | 0.812535 | 4.037632e-51 | -8.615850e-47 |
| Msa0060670 | Msa0256920 | 0.836700 | 8.026970e-57 | -8.615850e-47 |
| Msa0060670 | Msa0282960 | 0.808725 | 2.689813e-50 | -8.615850e-47 |
| Msa0060670 | Msa0289960 | 0.842946 | 1.895136e-58 | -8.615850e-47 |
| Msa0060670 | Msa0291120 | 0.829159 | 6.017576e-55 | -8.615850e-47 |
| Msa0060670 | Msa0297910 | 0.823124 | 1.639968e-53 | -8.615850e-47 |
| Msa0060670 | Msa0327760 | 0.806819 | 6.836252e-50 | -8.615850e-47 |
| Msa0060670 | Msa0334630 | 0.820073 | 8.315417e-53 | -8.615850e-47 |
| Msa0060670 | Msa0343210 | 0.825169 | 5.427435e-54 | -8.615850e-47 |
| Msa0060670 | Msa0420610 | 0.802228 | 6.197066e-49 | -8.615850e-47 |
| Msa0060670 | Msa0481630 | 0.826533 | 2.575520e-54 | -8.615850e-47 |
| Msa0060670 | Msa0512630 | 0.820125 | 8.091644e-53 | -8.615850e-47 |
| Msa0060670 | Msa0592660 | 0.830317 | 3.143162e-55 | -8.615850e-47 |
| Msa0060670 | Msa0612350 | 0.808690 | 2.735658e-50 | -8.615850e-47 |
| Msa0060670 | Msa0646240 | 0.813088 | 3.055275e-51 | -8.615850e-47 |
| Msa0060670 | Msa0682110 | 0.806251 | 9.006701e-50 | -8.615850e-47 |
| Msa0060670 | Msa0682160 | 0.800706 | 1.270746e-48 | -8.615850e-47 |
| Msa0060670 | Msa0686000 | 0.809086 | 2.251192e-50 | -8.615850e-47 |
| Msa0060670 | Msa0687580 | 0.812065 | 5.113710e-51 | -8.615850e-47 |
| Msa0060670 | Msa0712880 | 0.805947 | 1.043779e-49 | -8.615850e-47 |
| Msa0060670 | Msa0731590 | 0.826905 | 2.098992e-54 | -8.615850e-47 |
| Msa0060670 | Msa0736920 | 0.807167 | 5.769581e-50 | -8.615850e-47 |
| Msa0060670 | Msa0748150 | 0.809653 | 1.701198e-50 | -8.615850e-47 |
| Msa0060670 | Msa0778570 | 0.804908 | 1.723654e-49 | -8.615850e-47 |
| Msa0060670 | Msa0855870 | 0.831701 | 1.438045e-55 | -8.615850e-47 |
| Msa0060670 | Msa0870510 | 0.815843 | 7.511147e-52 | -8.615850e-47 |
| Msa0060670 | Msa0931620 | 0.808526 | 2.965894e-50 | -8.615850e-47 |
| Msa0060670 | Msa1012710 | 0.822427 | 2.382284e-53 | -8.615850e-47 |
| Msa0060670 | Msa1012800 | 0.827809 | 1.274637e-54 | -8.615850e-47 |
| Msa0060670 | Msa1094410 | 0.840192 | 1.008115e-57 | -8.615850e-47 |
| Msa0060670 | Msa1129330 | 0.823023 | 1.731326e-53 | -8.615850e-47 |
| Msa0060670 | Msa1131270 | 0.814398 | 1.572590e-51 | -8.615850e-47 |
| Msa0060670 | Msa1202800 | 0.818205 | 2.213433e-52 | -8.615850e-47 |
| Msa0060670 | Msa1203440 | 0.807043 | 6.129061e-50 | -8.615850e-47 |
| Msa0060670 | Msa1238600 | 0.861380 | 1.068663e-63 | -8.615850e-47 |
| Msa0060670 | Msa1238660 | 0.801603 | 8.329563e-49 | -8.615850e-47 |
| Msa0060670 | Msa1255210 | 0.824084 | 9.776042e-54 | -8.615850e-47 |
| Msa0060670 | Msa1280090 | 0.818231 | 2.183068e-52 | -8.615850e-47 |
| Msa0060670 | Msa1295650 | 0.827306 | 1.682594e-54 | -8.615850e-47 |
| Msa0060670 | Msa1319560 | 0.806937 | 6.452679e-50 | -8.615850e-47 |
| Msa0060670 | Msa1343600 | 0.805345 | 1.395977e-49 | -8.615850e-47 |
| Msa0060670 | Msa1428900 | 0.800985 | 1.114371e-48 | -8.615850e-47 |
| Msa0060670 | Msa1461370 | 0.808028 | 3.786898e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060670 | MtrunA17_Chr1g0160291 | 96.875 | 192 | 6 | 0 | 1 | 192 | 1 | 192 | 6.42e-134 | 374 |
| Msa0060670 | MtrunA17_Chr4g0044361 | 70.857 | 175 | 43 | 4 | 1 | 170 | 1 | 172 | 1.02e-76 | 229 |
| Msa0060670 | MtrunA17_Chr5g0435091 | 54.070 | 172 | 69 | 4 | 1 | 164 | 1 | 170 | 3.31e-55 | 175 |
| Msa0060670 | MtrunA17_Chr3g0111521 | 49.746 | 197 | 84 | 4 | 1 | 182 | 1 | 197 | 2.20e-52 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060670 | AT2G01340.1 | 63.529 | 170 | 57 | 3 | 1 | 169 | 1 | 166 | 1.08e-63 | 197 |
| Msa0060670 | AT1G71015.1 | 57.576 | 165 | 64 | 3 | 1 | 163 | 1 | 161 | 1.63e-48 | 157 |
| Msa0060670 | AT1G71015.2 | 57.576 | 165 | 64 | 3 | 1 | 163 | 1 | 161 | 1.63e-48 | 157 |
| Msa0060670 | AT1G66480.1 | 50.000 | 176 | 74 | 4 | 1 | 163 | 1 | 175 | 6.05e-46 | 152 |
| Msa0060670 | AT5G37840.1 | 41.919 | 198 | 105 | 6 | 1 | 192 | 1 | 194 | 7.46e-39 | 134 |
Find 58 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATAAATTTCATTCATTT+TGG | 0.067425 | 1_2:-18448839 | None:intergenic |
| ATTTAGAACTACACACAAAA+TGG | 0.241565 | 1_2:-18445194 | None:intergenic |
| AATGAATTTGTCGTTGTTCC+GGG | 0.328031 | 1_2:-18445084 | None:intergenic |
| CTAATAATGGGAAATAGTTT+AGG | 0.332015 | 1_2:+18445218 | Msa0060670:exon |
| GTAGTTCTAAATTCTAATAA+TGG | 0.333570 | 1_2:+18445205 | Msa0060670:exon |
| TCTGAGGAAGTGAAGCATTA+TGG | 0.340674 | 1_2:+18445353 | Msa0060670:CDS |
| ACATGTAAATGTTGCACCTT+TGG | 0.345379 | 1_2:+18445045 | Msa0060670:five_prime_UTR |
| TAATGATAAGAAAATGAAAA+AGG | 0.345766 | 1_2:+18445724 | Msa0060670:CDS |
| AAATGAATTTGTCGTTGTTC+CGG | 0.347196 | 1_2:-18445085 | None:intergenic |
| CCCACCTCGAAGTCGTTCAT+TGG | 0.353620 | 1_2:-18445563 | None:intergenic |
| TCTTGTAACTCGACTTTCCT+TGG | 0.360185 | 1_2:-18445447 | None:intergenic |
| AACTTCTCAACATCTGCCTT+TGG | 0.375562 | 1_2:-18445632 | None:intergenic |
| CCTAACCTTGAAGCTAAACT+TGG | 0.379812 | 1_2:+18448774 | Msa0060670:CDS |
| CCAAGTTTAGCTTCAAGGTT+AGG | 0.386616 | 1_2:-18448774 | None:intergenic |
| TAGTTCTAAATTCTAATAAT+GGG | 0.396437 | 1_2:+18445206 | Msa0060670:exon |
| AACTCTTTGTGTGCTTCCAA+TGG | 0.426840 | 1_2:-18445389 | None:intergenic |
| GAAAGCCGGTGAAGTGCTTA+AGG | 0.427598 | 1_2:+18445304 | Msa0060670:CDS |
| GGGTTCCAAGTTTAGCTTCA+AGG | 0.434743 | 1_2:-18448779 | None:intergenic |
| GTTACAAGAAGGGTTCGTTC+GGG | 0.451959 | 1_2:+18445461 | Msa0060670:CDS |
| CTTGTAACTCGACTTTCCTT+GGG | 0.453744 | 1_2:-18445446 | None:intergenic |
| TGCAACATTTACATGTGAAT+TGG | 0.460428 | 1_2:-18445038 | None:intergenic |
| AGTTACAAGAAGGGTTCGTT+CGG | 0.464996 | 1_2:+18445460 | Msa0060670:CDS |
| TTTAGAACTACACACAAAAT+GGG | 0.476785 | 1_2:-18445193 | None:intergenic |
| AAGAAGAGTTGACGAATGGC+GGG | 0.488902 | 1_2:+18445588 | Msa0060670:CDS |
| AGCACTTCACCGGCTTTCAC+CGG | 0.493553 | 1_2:-18445299 | None:intergenic |
| AACATTTACATGTGAATTGG+TGG | 0.516659 | 1_2:-18445035 | None:intergenic |
| GTGATCCTTAAGCACTTCAC+CGG | 0.518764 | 1_2:-18445309 | None:intergenic |
| ACAAAGGTGATGAAAATTGA+TGG | 0.530975 | 1_2:+18445254 | Msa0060670:CDS |
| TCATTGGTTTCATAATCGTA+AGG | 0.535977 | 1_2:-18445547 | None:intergenic |
| AGTTGACGAATGGCGGGGTG+AGG | 0.542180 | 1_2:+18445594 | Msa0060670:CDS |
| CTAAAGACACCGGTGAAAGC+CGG | 0.542691 | 1_2:+18445290 | Msa0060670:CDS |
| GGTTCTTTGTGAGCATTACC+CGG | 0.543928 | 1_2:+18445066 | Msa0060670:five_prime_UTR |
| TCTTGTCTTGTTAGAATCTG+AGG | 0.544333 | 1_2:+18445337 | Msa0060670:CDS |
| TGGAAGGGTAGCAGAGGAGT+TGG | 0.545103 | 1_2:+18445755 | Msa0060670:CDS |
| GAAACCAATGAACGACTTCG+AGG | 0.561915 | 1_2:+18445559 | Msa0060670:CDS |
| AGGAAAGTCGAGTTACAAGA+AGG | 0.564448 | 1_2:+18445450 | Msa0060670:CDS |
| ATAATGGGAAATAGTTTAGG+TGG | 0.567511 | 1_2:+18445221 | Msa0060670:exon |
| GAAGATTATGAGTCTTTGCA+TGG | 0.572826 | 1_2:+18445691 | Msa0060670:CDS |
| TGGAGTGAGAGCGAAGCCAT+TGG | 0.574068 | 1_2:+18445373 | Msa0060670:CDS |
| AAAGAAGAGTTGACGAATGG+CGG | 0.576273 | 1_2:+18445587 | Msa0060670:CDS |
| GATTCTAACAAGACAAGACC+AGG | 0.591028 | 1_2:-18445332 | None:intergenic |
| ACCAATGAACGACTTCGAGG+TGG | 0.613366 | 1_2:+18445562 | Msa0060670:CDS |
| GATGCAAAGTAGTAAAGATG+AGG | 0.620365 | 1_2:+18445655 | Msa0060670:CDS |
| AGAGTCTGTCTTTAGCTCGA+AGG | 0.625951 | 1_2:+18445513 | Msa0060670:CDS |
| CCAATGAACGACTTCGAGGT+GGG | 0.626451 | 1_2:+18445563 | Msa0060670:CDS |
| TTACAAGAAGGGTTCGTTCG+GGG | 0.631852 | 1_2:+18445462 | Msa0060670:CDS |
| TAATGCTCACAAAGAACCAA+AGG | 0.641241 | 1_2:-18445061 | None:intergenic |
| CAGCAAGTCAGCAACAGTGA+GGG | 0.643518 | 1_2:-18448799 | None:intergenic |
| ATGCATTGGAAGGGTAGCAG+AGG | 0.643927 | 1_2:+18445749 | Msa0060670:CDS |
| GGAAAGTCGAGTTACAAGAA+GGG | 0.646808 | 1_2:+18445451 | Msa0060670:CDS |
| GGAAAAGAAGAGTTGACGAA+TGG | 0.648290 | 1_2:+18445584 | Msa0060670:CDS |
| AGAAGAGTTGACGAATGGCG+GGG | 0.660824 | 1_2:+18445589 | Msa0060670:CDS |
| GTTGAAAATGAGACTTCCAA+AGG | 0.662765 | 1_2:+18445616 | Msa0060670:CDS |
| GCAGCAAGTCAGCAACAGTG+AGG | 0.664408 | 1_2:-18448800 | None:intergenic |
| AACATTCAAGCTAAAGACAC+CGG | 0.668856 | 1_2:+18445280 | Msa0060670:CDS |
| GTGGTTGTGAGACAATGACA+TGG | 0.755810 | 1_2:-18445016 | None:intergenic |
| ATTCTAACAAGACAAGACCA+GGG | 0.767432 | 1_2:-18445331 | None:intergenic |
| GAAGTGCTTAAGGATCACCC+TGG | 0.784850 | 1_2:+18445314 | Msa0060670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATTAATTTTATAATT+TGG | + | chr1_2:18446002-18446021 | Msa0060670:intron | 0.0% |
| !! | TATTTATTTATTTATTAAAT+TGG | + | chr1_2:18447646-18447665 | Msa0060670:intron | 0.0% |
| !! | ATTTATTTATTTATTAAATT+GGG | + | chr1_2:18447647-18447666 | Msa0060670:intron | 0.0% |
| !!! | AATTAATTTTATAATTTGGT+TGG | + | chr1_2:18446006-18446025 | Msa0060670:intron | 10.0% |
| !!! | TTTTTTTTTACAAATACTTT+AGG | - | chr1_2:18446378-18446397 | None:intergenic | 10.0% |
| !!! | ATATGTAACATTTTTTTTTT+TGG | - | chr1_2:18446887-18446906 | None:intergenic | 10.0% |
| !! | CTAATTATTATATTTGAAAA+AGG | - | chr1_2:18447610-18447629 | None:intergenic | 10.0% |
| !!! | TAGTTCTAAATTCTAATAAT+GGG | + | chr1_2:18445206-18445225 | Msa0060670:exon | 15.0% |
| !! | TAATGATAAGAAAATGAAAA+AGG | + | chr1_2:18445724-18445743 | Msa0060670:CDS | 15.0% |
| !! | GCATATTATTATTGTTTAAT+GGG | - | chr1_2:18446939-18446958 | None:intergenic | 15.0% |
| !! | AGCATATTATTATTGTTTAA+TGG | - | chr1_2:18446940-18446959 | None:intergenic | 15.0% |
| !!! | AAAATTGTACATTTTCAAAT+GGG | - | chr1_2:18447224-18447243 | None:intergenic | 15.0% |
| !! | TGTATATTAGTAGAAAAATA+TGG | - | chr1_2:18447264-18447283 | None:intergenic | 15.0% |
| !! | TTAAATTATACAAAACTTGT+AGG | - | chr1_2:18447468-18447487 | None:intergenic | 15.0% |
| !! | TATAGAATAATAATAATTCG+TGG | - | chr1_2:18447581-18447600 | None:intergenic | 15.0% |
| !! | TAAACAAAATGATTTATGTT+TGG | - | chr1_2:18448224-18448243 | None:intergenic | 15.0% |
| !!! | GTAGTTCTAAATTCTAATAA+TGG | + | chr1_2:18445205-18445224 | Msa0060670:exon | 20.0% |
| !!! | TTCATTTTGAGAAAAGAAAA+CGG | + | chr1_2:18445833-18445852 | Msa0060670:intron | 20.0% |
| !!! | TCAAAATGGAAAATAACTTT+TGG | - | chr1_2:18445866-18445885 | None:intergenic | 20.0% |
| !! | AAACAAGTTTAGTGTTTAAA+AGG | + | chr1_2:18445894-18445913 | Msa0060670:intron | 20.0% |
| !! | ATGATGAAATACATAATATG+AGG | + | chr1_2:18446174-18446193 | Msa0060670:intron | 20.0% |
| !!! | ATGTAGTTTTAAATAACCAA+TGG | + | chr1_2:18446332-18446351 | Msa0060670:intron | 20.0% |
| !!! | TGTAGTTTTAAATAACCAAT+GGG | + | chr1_2:18446333-18446352 | Msa0060670:intron | 20.0% |
| !! | TAGATAGTTTGAATAAAATG+AGG | - | chr1_2:18446566-18446585 | None:intergenic | 20.0% |
| !!! | ATATTTTTCTCATGAAATGA+TGG | - | chr1_2:18446711-18446730 | None:intergenic | 20.0% |
| !!! | ATATTTTTCTCATGAAATGA+TGG | - | chr1_2:18446711-18446730 | None:intergenic | 20.0% |
| !! | AAATAAATGTTACATATCAC+CGG | + | chr1_2:18446842-18446861 | Msa0060670:intron | 20.0% |
| !!! | TTTTTTTTTGGTACAAAAGA+GGG | - | chr1_2:18446875-18446894 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTGGTACAAAAG+AGG | - | chr1_2:18446876-18446895 | None:intergenic | 20.0% |
| !! | GTAATTTATTAGATCAACAA+TGG | + | chr1_2:18447008-18447027 | Msa0060670:intron | 20.0% |
| !!! | CAAAATTGTACATTTTCAAA+TGG | - | chr1_2:18447225-18447244 | None:intergenic | 20.0% |
| !!! | TATCTTGATTCTTTTATCAA+TGG | + | chr1_2:18447516-18447535 | Msa0060670:intron | 20.0% |
| !!! | ATCTTGATTCTTTTATCAAT+GGG | + | chr1_2:18447517-18447536 | Msa0060670:intron | 20.0% |
| !! | AAAGAATGAGAATTGATAAA+GGG | - | chr1_2:18448133-18448152 | None:intergenic | 20.0% |
| !! | TAAAGAATGAGAATTGATAA+AGG | - | chr1_2:18448134-18448153 | None:intergenic | 20.0% |
| !!! | ATTGTCAAAAAAAGTATCTA+TGG | - | chr1_2:18448501-18448520 | None:intergenic | 20.0% |
| !! | TGCTATTATTTATGAAAGAA+TGG | + | chr1_2:18448541-18448560 | Msa0060670:intron | 20.0% |
| !! | GCTATTATTTATGAAAGAAT+GGG | + | chr1_2:18448542-18448561 | Msa0060670:intron | 20.0% |
| !! | TTTAGAACTACACACAAAAT+GGG | - | chr1_2:18445196-18445215 | None:intergenic | 25.0% |
| !! | ATTTAGAACTACACACAAAA+TGG | - | chr1_2:18445197-18445216 | None:intergenic | 25.0% |
| !! | CTAATAATGGGAAATAGTTT+AGG | + | chr1_2:18445218-18445237 | Msa0060670:exon | 25.0% |
| !! | ACAAGAAAATAGAGTCTTTT+TGG | - | chr1_2:18445419-18445438 | None:intergenic | 25.0% |
| !! | AAAAAGACTCTATTTTCTTG+TGG | + | chr1_2:18445418-18445437 | Msa0060670:CDS | 25.0% |
| ! | AAATGAAAAAGGAAATGCAT+TGG | + | chr1_2:18445735-18445754 | Msa0060670:CDS | 25.0% |
| ! | TGAATACAAAAAAGCTTATG+AGG | + | chr1_2:18445778-18445797 | Msa0060670:CDS | 25.0% |
| !! | TTGTTTAGTCTTTCTCAAAA+TGG | - | chr1_2:18445880-18445899 | None:intergenic | 25.0% |
| !! | AACGTTTTCATACAAGTTTT+TGG | + | chr1_2:18445928-18445947 | Msa0060670:intron | 25.0% |
| ! | TAATCAAATGATTCAACGTT+AGG | - | chr1_2:18445985-18446004 | None:intergenic | 25.0% |
| ! | TGAAATACATAATATGAGGA+TGG | + | chr1_2:18446178-18446197 | Msa0060670:intron | 25.0% |
| ! | AATAAATGTTACATATCACC+GGG | + | chr1_2:18446843-18446862 | Msa0060670:intron | 25.0% |
| !! | GACATATTCTGATGAAATTT+TGG | + | chr1_2:18447061-18447080 | Msa0060670:intron | 25.0% |
| ! | AAATATGGTCAAAGTAAGTT+AGG | - | chr1_2:18447249-18447268 | None:intergenic | 25.0% |
| ! | TTAAGCTCAAAATTATGCAT+TGG | + | chr1_2:18447385-18447404 | Msa0060670:intron | 25.0% |
| !! | CATTTTACAGGTTCTTATAA+GGG | + | chr1_2:18447864-18447883 | Msa0060670:intron | 25.0% |
| ! | ACTAAAATAGACATAGCTAA+AGG | - | chr1_2:18448165-18448184 | None:intergenic | 25.0% |
| !! | TGAGAGAATTGATTTATGTT+TGG | - | chr1_2:18448268-18448287 | None:intergenic | 25.0% |
| ! | TTGATGAGATTTCAATTTGT+TGG | + | chr1_2:18448453-18448472 | Msa0060670:intron | 25.0% |
| ! | ATTCCATAAACAATCATGTA+TGG | + | chr1_2:18448580-18448599 | Msa0060670:intron | 25.0% |
| ! | AATCCATACATGATTGTTTA+TGG | - | chr1_2:18448586-18448605 | None:intergenic | 25.0% |
| ! | GGATTATCTAAACAATTTGT+AGG | + | chr1_2:18448601-18448620 | Msa0060670:intron | 25.0% |
| ! | CCAAAAACAAACATATTAGT+AGG | - | chr1_2:18448678-18448697 | None:intergenic | 25.0% |
| !!! | CCTACTAATATGTTTGTTTT+TGG | + | chr1_2:18448675-18448694 | Msa0060670:intron | 25.0% |
| AACATTTACATGTGAATTGG+TGG | - | chr1_2:18445038-18445057 | None:intergenic | 30.0% | |
| TGCAACATTTACATGTGAAT+TGG | - | chr1_2:18445041-18445060 | None:intergenic | 30.0% | |
| AAATGAATTTGTCGTTGTTC+CGG | - | chr1_2:18445088-18445107 | None:intergenic | 30.0% | |
| !!! | TGGGAACAAAATTTTGAGTT+TGG | - | chr1_2:18445177-18445196 | None:intergenic | 30.0% |
| ! | ATAATGGGAAATAGTTTAGG+TGG | + | chr1_2:18445221-18445240 | Msa0060670:exon | 30.0% |
| AGGTGGAAAAAAATCTACAA+AGG | + | chr1_2:18445238-18445257 | Msa0060670:CDS | 30.0% | |
| ACAAAGGTGATGAAAATTGA+TGG | + | chr1_2:18445254-18445273 | Msa0060670:CDS | 30.0% | |
| !! | TCATTGGTTTCATAATCGTA+AGG | - | chr1_2:18445550-18445569 | None:intergenic | 30.0% |
| AAAAAGGAAATGCATTGGAA+GGG | + | chr1_2:18445740-18445759 | Msa0060670:CDS | 30.0% | |
| !! | CAAGTTTTTGGATAAGTAGT+TGG | + | chr1_2:18445940-18445959 | Msa0060670:intron | 30.0% |
| ! | ATAAGTAGTTGGAAGCATAT+AGG | + | chr1_2:18445951-18445970 | Msa0060670:intron | 30.0% |
| ! | TAAGTAGTTGGAAGCATATA+GGG | + | chr1_2:18445952-18445971 | Msa0060670:intron | 30.0% |
| ! | CTTTTTAACCTCTCTTTTAC+CGG | + | chr1_2:18446669-18446688 | Msa0060670:intron | 30.0% |
| ! | AATTTTATCCGGTAAAAGAG+AGG | - | chr1_2:18446680-18446699 | None:intergenic | 30.0% |
| ! | CTTTTTAACCTCTCTTTTAC+CGG | + | chr1_2:18446669-18446688 | Msa0060670:intron | 30.0% |
| ! | AATTTTATCCGGTAAAAGAG+AGG | - | chr1_2:18446680-18446699 | None:intergenic | 30.0% |
| GGTCAAATTATGTAAGATCA+TGG | - | chr1_2:18447121-18447140 | None:intergenic | 30.0% | |
| AATTTGACCATCATTTAGAG+AGG | + | chr1_2:18447132-18447151 | Msa0060670:intron | 30.0% | |
| ATTTGACCATCATTTAGAGA+GGG | + | chr1_2:18447133-18447152 | Msa0060670:intron | 30.0% | |
| TCAACTGTGTCATGTATTAT+GGG | + | chr1_2:18447422-18447441 | Msa0060670:intron | 30.0% | |
| ATAAGAACCTGTAAAATGCA+GGG | - | chr1_2:18447862-18447881 | None:intergenic | 30.0% | |
| TATAAGAACCTGTAAAATGC+AGG | - | chr1_2:18447863-18447882 | None:intergenic | 30.0% | |
| ! | GCATTTTACAGGTTCTTATA+AGG | + | chr1_2:18447863-18447882 | Msa0060670:intron | 30.0% |
| !! | CACTGTAGAGAATTGATTTT+GGG | - | chr1_2:18447924-18447943 | None:intergenic | 30.0% |
| !!! | TTTTTGGCTAGAATTGCTTT+TGG | - | chr1_2:18447947-18447966 | None:intergenic | 30.0% |
| AAACTTATACACGTTGTTCA+AGG | - | chr1_2:18448071-18448090 | None:intergenic | 30.0% | |
| ATATTCAAAGCTGAACCAAA+CGG | + | chr1_2:18448342-18448361 | Msa0060670:intron | 30.0% | |
| AACTAACGACAGAAAAATAG+TGG | + | chr1_2:18448407-18448426 | Msa0060670:intron | 30.0% | |
| !! | AGTTTTATGCCAATCAATGA+AGG | + | chr1_2:18448728-18448747 | Msa0060670:intron | 30.0% |
| ACATGTAAATGTTGCACCTT+TGG | + | chr1_2:18445045-18445064 | Msa0060670:five_prime_UTR | 35.0% | |
| TAATGCTCACAAAGAACCAA+AGG | - | chr1_2:18445064-18445083 | None:intergenic | 35.0% | |
| AATGAATTTGTCGTTGTTCC+GGG | - | chr1_2:18445087-18445106 | None:intergenic | 35.0% | |
| AACATTCAAGCTAAAGACAC+CGG | + | chr1_2:18445280-18445299 | Msa0060670:CDS | 35.0% | |
| ATTCTAACAAGACAAGACCA+GGG | - | chr1_2:18445334-18445353 | None:intergenic | 35.0% | |
| ! | TCTTGTCTTGTTAGAATCTG+AGG | + | chr1_2:18445337-18445356 | Msa0060670:CDS | 35.0% |
| GTTGAAAATGAGACTTCCAA+AGG | + | chr1_2:18445616-18445635 | Msa0060670:CDS | 35.0% | |
| GATGCAAAGTAGTAAAGATG+AGG | + | chr1_2:18445655-18445674 | Msa0060670:CDS | 35.0% | |
| GAAGATTATGAGTCTTTGCA+TGG | + | chr1_2:18445691-18445710 | Msa0060670:CDS | 35.0% | |
| GAAAAAGGAAATGCATTGGA+AGG | + | chr1_2:18445739-18445758 | Msa0060670:CDS | 35.0% | |
| AATGGACGCTAATCATTAAG+AGG | - | chr1_2:18446069-18446088 | None:intergenic | 35.0% | |
| CATTTCTCCTTAGAACAAGA+GGG | + | chr1_2:18446085-18446104 | Msa0060670:intron | 35.0% | |
| CATGTAATCATGTATCCCAT+TGG | - | chr1_2:18446351-18446370 | None:intergenic | 35.0% | |
| TACCTCAAAGTAACTAACCA+AGG | + | chr1_2:18446408-18446427 | Msa0060670:intron | 35.0% | |
| ACCTCAAAGTAACTAACCAA+GGG | + | chr1_2:18446409-18446428 | Msa0060670:intron | 35.0% | |
| TAAAGTCGATATTAGTCCCT+TGG | - | chr1_2:18446428-18446447 | None:intergenic | 35.0% | |
| !! | AAGGGACTAATATCGACTTT+AGG | + | chr1_2:18446427-18446446 | Msa0060670:intron | 35.0% |
| !! | AGGGACTAATATCGACTTTA+GGG | + | chr1_2:18446428-18446447 | Msa0060670:intron | 35.0% |
| ACTAGAACTTCTTCTCTTAG+AGG | + | chr1_2:18446485-18446504 | Msa0060670:intron | 35.0% | |
| ! | TGGCACAACACAATTTTATC+CGG | - | chr1_2:18446691-18446710 | None:intergenic | 35.0% |
| ! | TGGCACAACACAATTTTATC+CGG | - | chr1_2:18446691-18446710 | None:intergenic | 35.0% |
| TTCAAATGGGTCATCTATTG+CGG | - | chr1_2:18447211-18447230 | None:intergenic | 35.0% | |
| GTCAACTGTGTCATGTATTA+TGG | + | chr1_2:18447421-18447440 | Msa0060670:intron | 35.0% | |
| !! | GCACTGTAGAGAATTGATTT+TGG | - | chr1_2:18447925-18447944 | None:intergenic | 35.0% |
| !! | TGAACCAAACACGTTGTTTT+TGG | - | chr1_2:18447963-18447982 | None:intergenic | 35.0% |
| ! | TTCTAGAAAAGCTAGAAGCT+AGG | - | chr1_2:18448040-18448059 | None:intergenic | 35.0% |
| TATTCAAAGCTGAACCAAAC+GGG | + | chr1_2:18448343-18448362 | Msa0060670:intron | 35.0% | |
| ! | TAGTGGATAACAGTACTATG+AGG | + | chr1_2:18448424-18448443 | Msa0060670:intron | 35.0% |
| AGTGGATAACAGTACTATGA+GGG | + | chr1_2:18448425-18448444 | Msa0060670:intron | 35.0% | |
| GAACAACTTCCTTCATTGAT+TGG | - | chr1_2:18448740-18448759 | None:intergenic | 35.0% | |
| GATTCTAACAAGACAAGACC+AGG | - | chr1_2:18445335-18445354 | None:intergenic | 40.0% | |
| ! | TCTGAGGAAGTGAAGCATTA+TGG | + | chr1_2:18445353-18445372 | Msa0060670:CDS | 40.0% |
| AACTCTTTGTGTGCTTCCAA+TGG | - | chr1_2:18445392-18445411 | None:intergenic | 40.0% | |
| ! | TTTTCTTGTGGAACTTCCCA+AGG | + | chr1_2:18445430-18445449 | Msa0060670:CDS | 40.0% |
| CTTGTAACTCGACTTTCCTT+GGG | - | chr1_2:18445449-18445468 | None:intergenic | 40.0% | |
| TCTTGTAACTCGACTTTCCT+TGG | - | chr1_2:18445450-18445469 | None:intergenic | 40.0% | |
| AGGAAAGTCGAGTTACAAGA+AGG | + | chr1_2:18445450-18445469 | Msa0060670:CDS | 40.0% | |
| GGAAAGTCGAGTTACAAGAA+GGG | + | chr1_2:18445451-18445470 | Msa0060670:CDS | 40.0% | |
| AGTTACAAGAAGGGTTCGTT+CGG | + | chr1_2:18445460-18445479 | Msa0060670:CDS | 40.0% | |
| GGAAAAGAAGAGTTGACGAA+TGG | + | chr1_2:18445584-18445603 | Msa0060670:CDS | 40.0% | |
| AAAGAAGAGTTGACGAATGG+CGG | + | chr1_2:18445587-18445606 | Msa0060670:CDS | 40.0% | |
| AACTTCTCAACATCTGCCTT+TGG | - | chr1_2:18445635-18445654 | None:intergenic | 40.0% | |
| !! | CCTCTTGTTCTAAGGAGAAA+TGG | - | chr1_2:18446087-18446106 | None:intergenic | 40.0% |
| CCATTTCTCCTTAGAACAAG+AGG | + | chr1_2:18446084-18446103 | Msa0060670:intron | 40.0% | |
| ! | TCCCTTGGTTAGTTACTTTG+AGG | - | chr1_2:18446413-18446432 | None:intergenic | 40.0% |
| GGTTGTCTCAAGATAAGCAA+GGG | - | chr1_2:18446918-18446937 | None:intergenic | 40.0% | |
| GTCATCTATTGCGGAACAAA+GGG | - | chr1_2:18447202-18447221 | None:intergenic | 40.0% | |
| ! | TATGCATTGGTATGCGTAAC+AGG | + | chr1_2:18447398-18447417 | Msa0060670:intron | 40.0% |
| ! | ATGCATTGGTATGCGTAACA+GGG | + | chr1_2:18447399-18447418 | Msa0060670:intron | 40.0% |
| CTGTGTCATGTATTATGGGA+CGG | + | chr1_2:18447426-18447445 | Msa0060670:intron | 40.0% | |
| !! | AATATAGTGGGCGACTAATC+CGG | - | chr1_2:18447754-18447773 | None:intergenic | 40.0% |
| ! | TATATTGGTGGGTCGGAAAT+CGG | + | chr1_2:18447768-18447787 | Msa0060670:intron | 40.0% |
| ! | GACAATACCCTGCATTTTAC+AGG | + | chr1_2:18447852-18447871 | Msa0060670:intron | 40.0% |
| TTATAAGGGCCTGTTTGGTT+TGG | + | chr1_2:18447878-18447897 | Msa0060670:intron | 40.0% | |
| CTAGCCAAAAACAACGTGTT+TGG | + | chr1_2:18447956-18447975 | Msa0060670:intron | 40.0% | |
| !! | TCATGGAGAATTGCTTTTGG+AGG | - | chr1_2:18448007-18448026 | None:intergenic | 40.0% |
| ! | GCTTCATGGAGAATTGCTTT+TGG | - | chr1_2:18448010-18448029 | None:intergenic | 40.0% |
| AGCTAGGATTTGTAGCTTCA+TGG | - | chr1_2:18448024-18448043 | None:intergenic | 40.0% | |
| TGTATAACTTAGTGCCCGTT+TGG | - | chr1_2:18448360-18448379 | None:intergenic | 40.0% | |
| GGAAGAATCTTATCATCTGC+AGG | - | chr1_2:18448480-18448499 | None:intergenic | 40.0% | |
| ! | CCAAGTTTAGCTTCAAGGTT+AGG | - | chr1_2:18448777-18448796 | None:intergenic | 40.0% |
| CCTAACCTTGAAGCTAAACT+TGG | + | chr1_2:18448774-18448793 | Msa0060670:CDS | 40.0% | |
| GTGGTTGTGAGACAATGACA+TGG | - | chr1_2:18445019-18445038 | None:intergenic | 45.0% | |
| GGTTCTTTGTGAGCATTACC+CGG | + | chr1_2:18445066-18445085 | Msa0060670:five_prime_UTR | 45.0% | |
| GTGATCCTTAAGCACTTCAC+CGG | - | chr1_2:18445312-18445331 | None:intergenic | 45.0% | |
| GTTACAAGAAGGGTTCGTTC+GGG | + | chr1_2:18445461-18445480 | Msa0060670:CDS | 45.0% | |
| TTACAAGAAGGGTTCGTTCG+GGG | + | chr1_2:18445462-18445481 | Msa0060670:CDS | 45.0% | |
| ! | AGAGTCTGTCTTTAGCTCGA+AGG | + | chr1_2:18445513-18445532 | Msa0060670:CDS | 45.0% |
| GAAACCAATGAACGACTTCG+AGG | + | chr1_2:18445559-18445578 | Msa0060670:CDS | 45.0% | |
| AAGAAGAGTTGACGAATGGC+GGG | + | chr1_2:18445588-18445607 | Msa0060670:CDS | 45.0% | |
| GTCTCAACCCTCTTGTTCTA+AGG | - | chr1_2:18446095-18446114 | None:intergenic | 45.0% | |
| TGTTACATATCACCGGGCTT+TGG | + | chr1_2:18446849-18446868 | Msa0060670:intron | 45.0% | |
| CTCAAGATAAGCAAGGGTCT+TGG | - | chr1_2:18446912-18446931 | None:intergenic | 45.0% | |
| GGGTTGTCTCAAGATAAGCA+AGG | - | chr1_2:18446919-18446938 | None:intergenic | 45.0% | |
| ACCATCATTTAGAGAGGGAG+AGG | + | chr1_2:18447138-18447157 | Msa0060670:intron | 45.0% | |
| TCCTCTCCCTCTCTAAATGA+TGG | - | chr1_2:18447142-18447161 | None:intergenic | 45.0% | |
| ATTTAGAGAGGGAGAGGATG+AGG | + | chr1_2:18447144-18447163 | Msa0060670:intron | 45.0% | |
| GGTCATCTATTGCGGAACAA+AGG | - | chr1_2:18447203-18447222 | None:intergenic | 45.0% | |
| TGTCATGTATTATGGGACGG+AGG | + | chr1_2:18447429-18447448 | Msa0060670:intron | 45.0% | |
| GTCATGTATTATGGGACGGA+GGG | + | chr1_2:18447430-18447449 | Msa0060670:intron | 45.0% | |
| !! | GGATTAGTCGCCCACTATAT+TGG | + | chr1_2:18447753-18447772 | Msa0060670:intron | 45.0% |
| TTAGTCGCCCACTATATTGG+TGG | + | chr1_2:18447756-18447775 | Msa0060670:intron | 45.0% | |
| TAGTCGCCCACTATATTGGT+GGG | + | chr1_2:18447757-18447776 | Msa0060670:intron | 45.0% | |
| TTCCGACCCACCAATATAGT+GGG | - | chr1_2:18447766-18447785 | None:intergenic | 45.0% | |
| TTTCCGACCCACCAATATAG+TGG | - | chr1_2:18447767-18447786 | None:intergenic | 45.0% | |
| GGTTCTTATAAGGGCCTGTT+TGG | + | chr1_2:18447873-18447892 | Msa0060670:intron | 45.0% | |
| TCTCAGAAGCCAAACCAAAC+AGG | - | chr1_2:18447890-18447909 | None:intergenic | 45.0% | |
| ! | GGGTTCCAAGTTTAGCTTCA+AGG | - | chr1_2:18448782-18448801 | None:intergenic | 45.0% |
| !! | TTTTGGGAGATAGCTAGCAC+TGG | - | chr1_2:18448825-18448844 | None:intergenic | 45.0% |
| !!! | TTCATTATTTTTATTTTAAA+TGG | - | chr1_2:18446604-18446623 | None:intergenic | 5.0% |
| !!! | TTGTTAAAATAATTTTTAAA+TGG | + | chr1_2:18447488-18447507 | Msa0060670:intron | 5.0% |
| !! | AATAAATAAATAAATAAACA+GGG | - | chr1_2:18447634-18447653 | None:intergenic | 5.0% |
| !! | AAATAAATAAATAAATAAAC+AGG | - | chr1_2:18447635-18447654 | None:intergenic | 5.0% |
| CTAAAGACACCGGTGAAAGC+CGG | + | chr1_2:18445290-18445309 | Msa0060670:CDS | 50.0% | |
| ! | GAAAGCCGGTGAAGTGCTTA+AGG | + | chr1_2:18445304-18445323 | Msa0060670:CDS | 50.0% |
| ! | GAAGTGCTTAAGGATCACCC+TGG | + | chr1_2:18445314-18445333 | Msa0060670:CDS | 50.0% |
| ACCAATGAACGACTTCGAGG+TGG | + | chr1_2:18445562-18445581 | Msa0060670:CDS | 50.0% | |
| CCAATGAACGACTTCGAGGT+GGG | + | chr1_2:18445563-18445582 | Msa0060670:CDS | 50.0% | |
| AGAAGAGTTGACGAATGGCG+GGG | + | chr1_2:18445589-18445608 | Msa0060670:CDS | 50.0% | |
| ATGCATTGGAAGGGTAGCAG+AGG | + | chr1_2:18445749-18445768 | Msa0060670:CDS | 50.0% | |
| TACAAAAGAGGGCCAAAGCC+CGG | - | chr1_2:18446864-18446883 | None:intergenic | 50.0% | |
| CAGCAAGTCAGCAACAGTGA+GGG | - | chr1_2:18448802-18448821 | None:intergenic | 50.0% | |
| !! | AGCACTTCACCGGCTTTCAC+CGG | - | chr1_2:18445302-18445321 | None:intergenic | 55.0% |
| TGGAGTGAGAGCGAAGCCAT+TGG | + | chr1_2:18445373-18445392 | Msa0060670:CDS | 55.0% | |
| CCCACCTCGAAGTCGTTCAT+TGG | - | chr1_2:18445566-18445585 | None:intergenic | 55.0% | |
| TGGAAGGGTAGCAGAGGAGT+TGG | + | chr1_2:18445755-18445774 | Msa0060670:CDS | 55.0% | |
| TGAGGATGGCTGAGTGTGCT+AGG | + | chr1_2:18446192-18446211 | Msa0060670:intron | 55.0% | |
| AGAGGGAGAGGATGAGGATG+AGG | + | chr1_2:18447150-18447169 | Msa0060670:intron | 55.0% | |
| GTATGCCTCTACGCATGAGC+CGG | + | chr1_2:18447732-18447751 | Msa0060670:intron | 55.0% | |
| CTAATCCGGCTCATGCGTAG+AGG | - | chr1_2:18447740-18447759 | None:intergenic | 55.0% | |
| ! | CGCCCACTATATTGGTGGGT+CGG | + | chr1_2:18447761-18447780 | Msa0060670:intron | 55.0% |
| GCAGCAAGTCAGCAACAGTG+AGG | - | chr1_2:18448803-18448822 | None:intergenic | 55.0% | |
| ! | AGTTGACGAATGGCGGGGTG+AGG | + | chr1_2:18445594-18445613 | Msa0060670:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18445005 | 18448851 | 18445005 | ID=Msa0060670;Name=Msa0060670 |
| chr1_2 | mRNA | 18445005 | 18448851 | 18445005 | ID=Msa0060670-mRNA-1;Parent=Msa0060670;Name=Msa0060670-mRNA-1;_AED=0.16;_eAED=0.24;_QI=219|0|0.5|1|1|1|2|0|218 |
| chr1_2 | exon | 18445005 | 18445799 | 18445005 | ID=Msa0060670-mRNA-1:exon:7174;Parent=Msa0060670-mRNA-1 |
| chr1_2 | exon | 18448771 | 18448851 | 18448771 | ID=Msa0060670-mRNA-1:exon:7175;Parent=Msa0060670-mRNA-1 |
| chr1_2 | five_prime_UTR | 18445005 | 18445223 | 18445005 | ID=Msa0060670-mRNA-1:five_prime_utr;Parent=Msa0060670-mRNA-1 |
| chr1_2 | CDS | 18445224 | 18445799 | 18445224 | ID=Msa0060670-mRNA-1:cds;Parent=Msa0060670-mRNA-1 |
| chr1_2 | CDS | 18448771 | 18448851 | 18448771 | ID=Msa0060670-mRNA-1:cds;Parent=Msa0060670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
