Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282840 | sp|Q9FH97|EPS1_ARATH | 41.860 | 258 | 125 | 8 | 27 | 274 | 27 | 269 | 5.10e-51 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282840 | Q1S5L5 | 85.664 | 286 | 29 | 4 | 1 | 280 | 1 | 280 | 3.35e-167 | 479 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019600 | Msa1282840 | 0.838228 | 3.257471e-57 | -8.615850e-47 |
| Msa0111750 | Msa1282840 | 0.818348 | 2.054523e-52 | -8.615850e-47 |
| Msa0669840 | Msa1282840 | 0.800945 | 1.135652e-48 | -8.615850e-47 |
| Msa1037890 | Msa1282840 | 0.813775 | 2.157389e-51 | -8.615850e-47 |
| Msa1037900 | Msa1282840 | 0.801818 | 7.526481e-49 | -8.615850e-47 |
| Msa0359250 | Msa1282840 | 0.805805 | 1.117865e-49 | -8.615850e-47 |
| Msa1129950 | Msa1282840 | 0.804251 | 2.363116e-49 | -8.615850e-47 |
| Msa0515950 | Msa1282840 | 0.802892 | 4.522110e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282840 | MtrunA17_Chr8g0354371 | 85.664 | 286 | 29 | 4 | 1 | 280 | 1 | 280 | 6.46e-171 | 479 |
| Msa1282840 | MtrunA17_Chr8g0359251 | 69.231 | 286 | 77 | 4 | 1 | 280 | 1 | 281 | 1.65e-134 | 387 |
| Msa1282840 | MtrunA17_Chr3g0125001 | 60.490 | 286 | 94 | 6 | 1 | 280 | 1 | 273 | 2.71e-112 | 330 |
| Msa1282840 | MtrunA17_Chr3g0087221 | 59.524 | 294 | 97 | 6 | 1 | 280 | 1 | 286 | 1.78e-109 | 324 |
| Msa1282840 | MtrunA17_Chr4g0010381 | 59.028 | 288 | 102 | 6 | 1 | 280 | 1 | 280 | 9.86e-108 | 319 |
| Msa1282840 | MtrunA17_Chr4g0010311 | 55.903 | 288 | 110 | 6 | 1 | 279 | 1 | 280 | 3.78e-103 | 307 |
| Msa1282840 | MtrunA17_Chr4g0010331 | 55.903 | 288 | 106 | 7 | 1 | 280 | 1 | 275 | 7.34e-101 | 301 |
| Msa1282840 | MtrunA17_Chr4g0010361 | 54.671 | 289 | 114 | 6 | 1 | 280 | 1 | 281 | 1.93e-99 | 298 |
| Msa1282840 | MtrunA17_Chr7g0224131 | 54.671 | 289 | 114 | 6 | 1 | 280 | 1 | 281 | 1.93e-99 | 298 |
| Msa1282840 | MtrunA17_Chr4g0010351 | 53.633 | 289 | 117 | 6 | 1 | 280 | 1 | 281 | 1.50e-97 | 291 |
| Msa1282840 | MtrunA17_Chr4g0053111 | 55.782 | 294 | 109 | 9 | 1 | 280 | 1 | 287 | 1.45e-96 | 291 |
| Msa1282840 | MtrunA17_Chr4g0053081 | 52.881 | 295 | 114 | 8 | 1 | 280 | 1 | 285 | 2.52e-96 | 290 |
| Msa1282840 | MtrunA17_Chr8g0374911 | 51.027 | 292 | 126 | 6 | 1 | 280 | 22 | 308 | 5.90e-91 | 277 |
| Msa1282840 | MtrunA17_Chr4g0053061 | 51.370 | 292 | 125 | 6 | 1 | 280 | 29 | 315 | 2.09e-90 | 276 |
| Msa1282840 | MtrunA17_Chr4g0010121 | 50.512 | 293 | 115 | 7 | 1 | 277 | 40 | 318 | 8.32e-86 | 264 |
| Msa1282840 | MtrunA17_Chr4g0053091 | 50.000 | 298 | 107 | 7 | 1 | 280 | 1 | 274 | 9.20e-85 | 260 |
| Msa1282840 | MtrunA17_Chr8g0374641 | 50.853 | 293 | 118 | 8 | 1 | 280 | 1 | 280 | 8.88e-83 | 255 |
| Msa1282840 | MtrunA17_Chr8g0353891 | 61.395 | 215 | 75 | 4 | 1 | 209 | 1 | 213 | 2.35e-81 | 244 |
| Msa1282840 | MtrunA17_Chr6g0456591 | 55.708 | 219 | 79 | 7 | 1 | 213 | 15 | 221 | 5.10e-71 | 218 |
| Msa1282840 | MtrunA17_Chr7g0224121 | 63.194 | 144 | 49 | 2 | 41 | 183 | 42 | 182 | 4.56e-60 | 189 |
| Msa1282840 | MtrunA17_Chr3g0134041 | 40.076 | 262 | 138 | 6 | 29 | 278 | 30 | 284 | 1.00e-56 | 188 |
| Msa1282840 | MtrunA17_Chr3g0134111 | 40.755 | 265 | 135 | 6 | 29 | 278 | 30 | 287 | 9.25e-52 | 175 |
| Msa1282840 | MtrunA17_Chr3g0134071 | 38.889 | 270 | 138 | 6 | 29 | 278 | 30 | 292 | 1.34e-51 | 176 |
| Msa1282840 | MtrunA17_Chr3g0134091 | 40.000 | 265 | 137 | 7 | 29 | 278 | 29 | 286 | 1.49e-51 | 175 |
| Msa1282840 | MtrunA17_Chr3g0134121 | 39.098 | 266 | 139 | 6 | 29 | 278 | 29 | 287 | 4.50e-50 | 172 |
| Msa1282840 | MtrunA17_Chr6g0463331 | 62.903 | 124 | 40 | 3 | 69 | 186 | 44 | 167 | 1.23e-46 | 154 |
| Msa1282840 | MtrunA17_Chr3g0134061 | 35.870 | 276 | 144 | 7 | 29 | 278 | 28 | 296 | 7.16e-41 | 147 |
| Msa1282840 | MtrunA17_Chr3g0134101 | 38.023 | 263 | 132 | 7 | 29 | 279 | 46 | 289 | 1.07e-40 | 146 |
| Msa1282840 | MtrunA17_Chr3g0113181 | 31.746 | 315 | 162 | 10 | 2 | 279 | 10 | 308 | 8.07e-33 | 125 |
| Msa1282840 | MtrunA17_Chr6g0463321 | 59.783 | 92 | 31 | 2 | 189 | 280 | 1 | 86 | 4.14e-31 | 114 |
| Msa1282840 | MtrunA17_Chr5g0436621 | 34.052 | 232 | 134 | 6 | 41 | 268 | 43 | 259 | 1.29e-28 | 114 |
| Msa1282840 | MtrunA17_Chr4g0005941 | 30.233 | 344 | 152 | 11 | 2 | 279 | 4 | 325 | 7.44e-28 | 111 |
| Msa1282840 | MtrunA17_Chr6g0467861 | 29.268 | 287 | 161 | 7 | 29 | 280 | 68 | 347 | 2.05e-23 | 99.4 |
| Msa1282840 | MtrunA17_Chr8g0353901 | 72.727 | 55 | 15 | 0 | 225 | 279 | 13 | 67 | 8.37e-20 | 86.3 |
| Msa1282840 | MtrunA17_Chr7g0224101 | 53.659 | 82 | 36 | 1 | 201 | 280 | 10 | 91 | 1.91e-19 | 82.8 |
| Msa1282840 | MtrunA17_Chr2g0334001 | 30.672 | 238 | 140 | 11 | 52 | 278 | 47 | 270 | 3.82e-19 | 86.7 |
| Msa1282840 | MtrunA17_Chr4g0001861 | 31.140 | 228 | 137 | 10 | 59 | 278 | 56 | 271 | 6.27e-19 | 85.9 |
| Msa1282840 | MtrunA17_Chr8g0371821 | 27.876 | 226 | 145 | 8 | 59 | 278 | 56 | 269 | 6.72e-17 | 80.1 |
| Msa1282840 | MtrunA17_Chr8g0386141 | 30.870 | 230 | 140 | 10 | 59 | 280 | 59 | 277 | 2.86e-16 | 78.2 |
| Msa1282840 | MtrunA17_Chr3g0087401 | 26.587 | 252 | 162 | 9 | 43 | 279 | 38 | 281 | 2.96e-15 | 75.5 |
| Msa1282840 | MtrunA17_Chr7g0273791 | 25.581 | 215 | 138 | 7 | 42 | 247 | 48 | 249 | 3.12e-15 | 75.5 |
| Msa1282840 | MtrunA17_Chr3g0134131 | 41.463 | 82 | 48 | 0 | 97 | 178 | 54 | 135 | 3.25e-15 | 74.3 |
| Msa1282840 | MtrunA17_Chr7g0273731 | 27.570 | 214 | 135 | 6 | 42 | 247 | 131 | 332 | 2.31e-14 | 72.8 |
| Msa1282840 | MtrunA17_Chr5g0433641 | 27.830 | 212 | 136 | 8 | 42 | 246 | 48 | 249 | 7.27e-14 | 71.2 |
| Msa1282840 | MtrunA17_Chr1g0165711 | 26.337 | 243 | 158 | 9 | 44 | 280 | 49 | 276 | 9.46e-14 | 70.9 |
| Msa1282840 | MtrunA17_Chr7g0273781 | 26.761 | 213 | 138 | 6 | 42 | 247 | 81 | 282 | 1.20e-13 | 70.5 |
| Msa1282840 | MtrunA17_Chr7g0273761 | 24.272 | 206 | 152 | 2 | 42 | 246 | 420 | 622 | 1.14e-12 | 68.2 |
| Msa1282840 | MtrunA17_Chr7g0273721 | 26.027 | 219 | 131 | 10 | 42 | 246 | 49 | 250 | 2.26e-12 | 66.6 |
| Msa1282840 | MtrunA17_Chr4g0072041 | 25.969 | 258 | 144 | 12 | 44 | 277 | 53 | 287 | 8.76e-12 | 65.1 |
| Msa1282840 | MtrunA17_Chr5g0438701 | 27.684 | 177 | 115 | 6 | 4 | 177 | 3 | 169 | 1.59e-11 | 64.3 |
| Msa1282840 | MtrunA17_Chr7g0253541 | 27.556 | 225 | 147 | 9 | 62 | 276 | 63 | 281 | 2.36e-11 | 63.5 |
| Msa1282840 | MtrunA17_Chr3g0132001 | 26.667 | 255 | 150 | 12 | 43 | 280 | 49 | 283 | 2.89e-11 | 63.5 |
| Msa1282840 | MtrunA17_Chr4g0054081 | 25.000 | 248 | 145 | 8 | 47 | 276 | 58 | 282 | 6.79e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282840 | AT5G67160.1 | 41.860 | 258 | 125 | 8 | 27 | 274 | 27 | 269 | 5.19e-52 | 176 |
| Msa1282840 | AT3G50300.1 | 40.068 | 292 | 149 | 11 | 1 | 279 | 1 | 279 | 6.96e-52 | 176 |
| Msa1282840 | AT3G50280.1 | 41.132 | 265 | 138 | 8 | 25 | 279 | 23 | 279 | 3.26e-50 | 171 |
| Msa1282840 | AT5G67150.1 | 39.041 | 292 | 154 | 12 | 4 | 280 | 5 | 287 | 1.60e-48 | 167 |
| Msa1282840 | AT5G07850.1 | 37.405 | 262 | 147 | 5 | 27 | 278 | 34 | 288 | 6.36e-46 | 160 |
| Msa1282840 | AT5G38130.1 | 38.983 | 295 | 146 | 13 | 1 | 279 | 21 | 297 | 1.08e-44 | 157 |
| Msa1282840 | AT3G50270.1 | 39.706 | 272 | 140 | 10 | 18 | 274 | 18 | 280 | 1.69e-44 | 156 |
| Msa1282840 | AT5G42830.1 | 35.361 | 263 | 150 | 5 | 29 | 278 | 30 | 285 | 7.93e-44 | 155 |
| Msa1282840 | AT5G07860.1 | 38.938 | 226 | 128 | 4 | 56 | 278 | 69 | 287 | 9.82e-42 | 149 |
| Msa1282840 | AT5G07870.1 | 39.407 | 236 | 123 | 7 | 56 | 278 | 69 | 297 | 1.51e-39 | 144 |
| Msa1282840 | AT2G39980.1 | 39.594 | 197 | 103 | 5 | 56 | 250 | 59 | 241 | 1.71e-36 | 135 |
| Msa1282840 | AT5G01210.1 | 34.228 | 298 | 145 | 8 | 21 | 280 | 24 | 308 | 9.25e-34 | 128 |
| Msa1282840 | AT3G50280.2 | 43.871 | 155 | 78 | 3 | 128 | 279 | 1 | 149 | 1.69e-31 | 119 |
| Msa1282840 | AT3G50290.1 | 47.134 | 157 | 69 | 4 | 125 | 274 | 4 | 153 | 7.58e-31 | 116 |
| Msa1282840 | AT5G23940.1 | 30.627 | 271 | 165 | 7 | 29 | 280 | 25 | 291 | 3.55e-27 | 110 |
| Msa1282840 | AT5G48930.1 | 32.301 | 226 | 137 | 10 | 59 | 278 | 56 | 271 | 4.68e-19 | 86.7 |
| Msa1282840 | AT1G24430.1 | 26.908 | 249 | 146 | 9 | 36 | 279 | 40 | 257 | 1.49e-13 | 70.5 |
| Msa1282840 | AT3G30280.1 | 26.829 | 246 | 146 | 11 | 41 | 277 | 43 | 263 | 1.20e-12 | 68.2 |
| Msa1282840 | AT5G57840.1 | 26.538 | 260 | 162 | 10 | 25 | 270 | 20 | 264 | 7.55e-12 | 65.5 |
| Msa1282840 | AT5G41040.2 | 28.879 | 232 | 144 | 11 | 56 | 278 | 66 | 285 | 9.83e-12 | 65.1 |
| Msa1282840 | AT1G03390.1 | 26.357 | 258 | 151 | 10 | 43 | 280 | 59 | 297 | 1.01e-11 | 65.1 |
| Msa1282840 | AT5G41040.1 | 28.879 | 232 | 144 | 11 | 56 | 278 | 82 | 301 | 1.14e-11 | 65.1 |
| Msa1282840 | AT1G78990.1 | 27.126 | 247 | 149 | 9 | 44 | 280 | 52 | 277 | 1.15e-11 | 65.1 |
| Msa1282840 | AT3G48720.1 | 26.531 | 245 | 164 | 10 | 43 | 280 | 44 | 279 | 4.34e-11 | 63.2 |
Find 36 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTTCAAATGATGGAATTT+TGG | 0.223149 | 8_3:-23807968 | None:intergenic |
| AATGAAACATCCTCTCATTT+AGG | 0.241281 | 8_3:-23808095 | None:intergenic |
| TAGATGAAAGAGAATGTTTA+AGG | 0.269943 | 8_3:-23807575 | None:intergenic |
| GATCGATTGAATGATAATTT+AGG | 0.278701 | 8_3:-23807452 | None:intergenic |
| GATCTACAATTTCTCCCATT+TGG | 0.340225 | 8_3:+23807486 | Msa1282840:CDS |
| AAAATTCAAAGCCAACTTAG+AGG | 0.353981 | 8_3:+23808143 | Msa1282840:CDS |
| CATCAAGTAGTTCTGTTACT+TGG | 0.400250 | 8_3:-23807840 | None:intergenic |
| TCGCTGATGGCACATCGATT+TGG | 0.430140 | 8_3:+23807896 | Msa1282840:CDS |
| TTTGGCATTTCATCAATTCA+TGG | 0.451540 | 8_3:+23807914 | Msa1282840:CDS |
| GTGTCGTTGGTTGACATCCT+TGG | 0.451582 | 8_3:+23807727 | Msa1282840:CDS |
| CAAGTAACAGAACTACTTGA+TGG | 0.451665 | 8_3:+23807841 | Msa1282840:CDS |
| TACTGGTCGTCTCAAAATCA+AGG | 0.451765 | 8_3:+23807620 | Msa1282840:CDS |
| GGAAACCAACGTTCAAATGA+TGG | 0.463001 | 8_3:-23807976 | None:intergenic |
| ATCGGAGGTTGAATACAATC+TGG | 0.482056 | 8_3:-23807997 | None:intergenic |
| ATTGTGAAAGGAAATTGAAT+CGG | 0.485065 | 8_3:-23808015 | None:intergenic |
| CTTTGTACCAGCCTCTAAGT+TGG | 0.486862 | 8_3:-23808154 | None:intergenic |
| ATTCAATCGATCTAACATCA+TGG | 0.499650 | 8_3:+23807463 | Msa1282840:CDS |
| TTGGCATTTCATCAATTCAT+GGG | 0.510084 | 8_3:+23807915 | Msa1282840:CDS |
| TTCAAAGCCAACTTAGAGGC+TGG | 0.516313 | 8_3:+23808147 | Msa1282840:CDS |
| TTTGCTGCATGGATTGTAGT+GGG | 0.522306 | 8_3:-23807414 | None:intergenic |
| AAGAATTGTGATTTGCTGCA+TGG | 0.524686 | 8_3:-23807425 | None:intergenic |
| GTTACTTGGACAGCAAGTAA+TGG | 0.529511 | 8_3:-23807826 | None:intergenic |
| GTTAATCATGTGGTCGCTGA+TGG | 0.538100 | 8_3:+23807883 | Msa1282840:CDS |
| AAATTCCATCATTTGAACGT+TGG | 0.545341 | 8_3:+23807971 | Msa1282840:CDS |
| TTCAATCGATCTAACATCAT+GGG | 0.549703 | 8_3:+23807464 | Msa1282840:CDS |
| ACCTGCATTGTTGCACATGA+TGG | 0.565919 | 8_3:-23807670 | None:intergenic |
| ATTTGCTGCATGGATTGTAG+TGG | 0.567370 | 8_3:-23807415 | None:intergenic |
| TAGGATGATACGTGGCTCCA+AGG | 0.577707 | 8_3:-23807744 | None:intergenic |
| TGCTGCATGGATTGTAGTGG+GGG | 0.578676 | 8_3:-23807412 | None:intergenic |
| GCAGAAAATACCAGTGTCGT+TGG | 0.578949 | 8_3:+23807714 | Msa1282840:intron |
| GTGAAAGGAAATTGAATCGG+AGG | 0.583992 | 8_3:-23808012 | None:intergenic |
| TCCATCATGTGCAACAATGC+AGG | 0.617120 | 8_3:+23807669 | Msa1282840:CDS |
| TTGCTGCATGGATTGTAGTG+GGG | 0.621325 | 8_3:-23807413 | None:intergenic |
| AGGATGTCAACCAACGACAC+TGG | 0.635619 | 8_3:-23807724 | None:intergenic |
| TGCATGCACAGTTAATCATG+TGG | 0.661565 | 8_3:+23807873 | Msa1282840:CDS |
| TTGAGACGACCAGTAAAAGG+CGG | 0.666502 | 8_3:-23807612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATGAATGGAGAATTTT+AGG | - | chr8_3:23807766-23807785 | None:intergenic | 20.0% |
| !! | CATTAAATGGAAAAAATGAA+TGG | - | chr8_3:23807777-23807796 | None:intergenic | 20.0% |
| !!! | CATTCATTTTTTCCATTTAA+TGG | + | chr8_3:23807775-23807794 | Msa1282840:CDS | 20.0% |
| !!! | TTAGAATGATGATTATTTTG+TGG | - | chr8_3:23808045-23808064 | None:intergenic | 20.0% |
| !!! | AAAAATGAATGGAGAATTTT+AGG | - | chr8_3:23807766-23807785 | None:intergenic | 20.0% |
| !! | CATTAAATGGAAAAAATGAA+TGG | - | chr8_3:23807777-23807796 | None:intergenic | 20.0% |
| !!! | CATTCATTTTTTCCATTTAA+TGG | + | chr8_3:23807775-23807794 | Msa1282840:CDS | 20.0% |
| !!! | TTAGAATGATGATTATTTTG+TGG | - | chr8_3:23808045-23808064 | None:intergenic | 20.0% |
| ! | GATCGATTGAATGATAATTT+AGG | - | chr8_3:23807455-23807474 | None:intergenic | 25.0% |
| !! | TTGATGTGTCTAATTTTGAA+GGG | - | chr8_3:23807542-23807561 | None:intergenic | 25.0% |
| !! | TTTGATGTGTCTAATTTTGA+AGG | - | chr8_3:23807543-23807562 | None:intergenic | 25.0% |
| ! | TAGATGAAAGAGAATGTTTA+AGG | - | chr8_3:23807578-23807597 | None:intergenic | 25.0% |
| !! | TAGTTTTTCACTCCATTAAA+TGG | - | chr8_3:23807790-23807809 | None:intergenic | 25.0% |
| ! | ATTGTGAAAGGAAATTGAAT+CGG | - | chr8_3:23808018-23808037 | None:intergenic | 25.0% |
| ! | GATCGATTGAATGATAATTT+AGG | - | chr8_3:23807455-23807474 | None:intergenic | 25.0% |
| !! | TTGATGTGTCTAATTTTGAA+GGG | - | chr8_3:23807542-23807561 | None:intergenic | 25.0% |
| !! | TTTGATGTGTCTAATTTTGA+AGG | - | chr8_3:23807543-23807562 | None:intergenic | 25.0% |
| ! | TAGATGAAAGAGAATGTTTA+AGG | - | chr8_3:23807578-23807597 | None:intergenic | 25.0% |
| !! | TAGTTTTTCACTCCATTAAA+TGG | - | chr8_3:23807790-23807809 | None:intergenic | 25.0% |
| ! | ATTGTGAAAGGAAATTGAAT+CGG | - | chr8_3:23808018-23808037 | None:intergenic | 25.0% |
| ATTCAATCGATCTAACATCA+TGG | + | chr8_3:23807463-23807482 | Msa1282840:CDS | 30.0% | |
| TTCAATCGATCTAACATCAT+GGG | + | chr8_3:23807464-23807483 | Msa1282840:CDS | 30.0% | |
| AAAAGGCGGAAAAAATTCAA+GGG | - | chr8_3:23807601-23807620 | None:intergenic | 30.0% | |
| TAAAAGGCGGAAAAAATTCA+AGG | - | chr8_3:23807602-23807621 | None:intergenic | 30.0% | |
| TTTGGCATTTCATCAATTCA+TGG | + | chr8_3:23807914-23807933 | Msa1282840:CDS | 30.0% | |
| TTGGCATTTCATCAATTCAT+GGG | + | chr8_3:23807915-23807934 | Msa1282840:CDS | 30.0% | |
| !! | AAGACAACCATTTGAGTTTT+TGG | - | chr8_3:23807941-23807960 | None:intergenic | 30.0% |
| !! | ACGTTCAAATGATGGAATTT+TGG | - | chr8_3:23807971-23807990 | None:intergenic | 30.0% |
| AAATTCCATCATTTGAACGT+TGG | + | chr8_3:23807971-23807990 | Msa1282840:CDS | 30.0% | |
| !! | TTTTGTGGTTCTATTGTGAA+AGG | - | chr8_3:23808030-23808049 | None:intergenic | 30.0% |
| AAAAACTCAACCTAAATGAG+AGG | + | chr8_3:23808085-23808104 | Msa1282840:CDS | 30.0% | |
| AATGAAACATCCTCTCATTT+AGG | - | chr8_3:23808098-23808117 | None:intergenic | 30.0% | |
| AAAATTCAAAGCCAACTTAG+AGG | + | chr8_3:23808143-23808162 | Msa1282840:CDS | 30.0% | |
| ! | AAGCACTTTTCACTCATATT+TGG | + | chr8_3:23808193-23808212 | Msa1282840:CDS | 30.0% |
| ATTCAATCGATCTAACATCA+TGG | + | chr8_3:23807463-23807482 | Msa1282840:CDS | 30.0% | |
| TTCAATCGATCTAACATCAT+GGG | + | chr8_3:23807464-23807483 | Msa1282840:CDS | 30.0% | |
| AAAAGGCGGAAAAAATTCAA+GGG | - | chr8_3:23807601-23807620 | None:intergenic | 30.0% | |
| TAAAAGGCGGAAAAAATTCA+AGG | - | chr8_3:23807602-23807621 | None:intergenic | 30.0% | |
| TTTGGCATTTCATCAATTCA+TGG | + | chr8_3:23807914-23807933 | Msa1282840:CDS | 30.0% | |
| TTGGCATTTCATCAATTCAT+GGG | + | chr8_3:23807915-23807934 | Msa1282840:CDS | 30.0% | |
| !! | AAGACAACCATTTGAGTTTT+TGG | - | chr8_3:23807941-23807960 | None:intergenic | 30.0% |
| !! | ACGTTCAAATGATGGAATTT+TGG | - | chr8_3:23807971-23807990 | None:intergenic | 30.0% |
| AAATTCCATCATTTGAACGT+TGG | + | chr8_3:23807971-23807990 | Msa1282840:CDS | 30.0% | |
| !! | TTTTGTGGTTCTATTGTGAA+AGG | - | chr8_3:23808030-23808049 | None:intergenic | 30.0% |
| AAAAACTCAACCTAAATGAG+AGG | + | chr8_3:23808085-23808104 | Msa1282840:CDS | 30.0% | |
| AATGAAACATCCTCTCATTT+AGG | - | chr8_3:23808098-23808117 | None:intergenic | 30.0% | |
| AAAATTCAAAGCCAACTTAG+AGG | + | chr8_3:23808143-23808162 | Msa1282840:CDS | 30.0% | |
| ! | AAGCACTTTTCACTCATATT+TGG | + | chr8_3:23808193-23808212 | Msa1282840:CDS | 30.0% |
| !! | AAGAATTGTGATTTGCTGCA+TGG | - | chr8_3:23807428-23807447 | None:intergenic | 35.0% |
| GATCTACAATTTCTCCCATT+TGG | + | chr8_3:23807486-23807505 | Msa1282840:CDS | 35.0% | |
| !! | CCTTTTAGTTGACTCCAAAT+GGG | - | chr8_3:23807503-23807522 | None:intergenic | 35.0% |
| ! | CCATTTGGAGTCAACTAAAA+GGG | + | chr8_3:23807501-23807520 | Msa1282840:intron | 35.0% |
| ! | CATTTGGAGTCAACTAAAAG+GGG | + | chr8_3:23807502-23807521 | Msa1282840:intron | 35.0% |
| !! | ATGTGTCTAATTTTGAAGGG+TGG | - | chr8_3:23807539-23807558 | None:intergenic | 35.0% |
| !!! | GAATTTTTTCCGCCTTTTAC+TGG | + | chr8_3:23807603-23807622 | Msa1282840:CDS | 35.0% |
| !!! | ATTTTGAGACGACCAGTAAA+AGG | - | chr8_3:23807618-23807637 | None:intergenic | 35.0% |
| !!! | GAGAATTTTAGGATGATACG+TGG | - | chr8_3:23807755-23807774 | None:intergenic | 35.0% |
| AATGGAGTGAAAAACTACGA+AGG | + | chr8_3:23807793-23807812 | Msa1282840:CDS | 35.0% | |
| ATGGAGTGAAAAACTACGAA+GGG | + | chr8_3:23807794-23807813 | Msa1282840:CDS | 35.0% | |
| ! | CATCAAGTAGTTCTGTTACT+TGG | - | chr8_3:23807843-23807862 | None:intergenic | 35.0% |
| CAAGTAACAGAACTACTTGA+TGG | + | chr8_3:23807841-23807860 | Msa1282840:CDS | 35.0% | |
| !! | AAGAATTGTGATTTGCTGCA+TGG | - | chr8_3:23807428-23807447 | None:intergenic | 35.0% |
| GATCTACAATTTCTCCCATT+TGG | + | chr8_3:23807486-23807505 | Msa1282840:CDS | 35.0% | |
| !! | CCTTTTAGTTGACTCCAAAT+GGG | - | chr8_3:23807503-23807522 | None:intergenic | 35.0% |
| ! | CCATTTGGAGTCAACTAAAA+GGG | + | chr8_3:23807501-23807520 | Msa1282840:intron | 35.0% |
| ! | CATTTGGAGTCAACTAAAAG+GGG | + | chr8_3:23807502-23807521 | Msa1282840:intron | 35.0% |
| !! | ATGTGTCTAATTTTGAAGGG+TGG | - | chr8_3:23807539-23807558 | None:intergenic | 35.0% |
| !!! | GAATTTTTTCCGCCTTTTAC+TGG | + | chr8_3:23807603-23807622 | Msa1282840:CDS | 35.0% |
| !!! | ATTTTGAGACGACCAGTAAA+AGG | - | chr8_3:23807618-23807637 | None:intergenic | 35.0% |
| !!! | GAGAATTTTAGGATGATACG+TGG | - | chr8_3:23807755-23807774 | None:intergenic | 35.0% |
| AATGGAGTGAAAAACTACGA+AGG | + | chr8_3:23807793-23807812 | Msa1282840:CDS | 35.0% | |
| ATGGAGTGAAAAACTACGAA+GGG | + | chr8_3:23807794-23807813 | Msa1282840:CDS | 35.0% | |
| ! | CATCAAGTAGTTCTGTTACT+TGG | - | chr8_3:23807843-23807862 | None:intergenic | 35.0% |
| CAAGTAACAGAACTACTTGA+TGG | + | chr8_3:23807841-23807860 | Msa1282840:CDS | 35.0% | |
| ! | TTTGCTGCATGGATTGTAGT+GGG | - | chr8_3:23807417-23807436 | None:intergenic | 40.0% |
| ! | ATTTGCTGCATGGATTGTAG+TGG | - | chr8_3:23807418-23807437 | None:intergenic | 40.0% |
| ! | CCCATTTGGAGTCAACTAAA+AGG | + | chr8_3:23807500-23807519 | Msa1282840:intron | 40.0% |
| !! | CCCTTTTAGTTGACTCCAAA+TGG | - | chr8_3:23807504-23807523 | None:intergenic | 40.0% |
| TACTGGTCGTCTCAAAATCA+AGG | + | chr8_3:23807620-23807639 | Msa1282840:CDS | 40.0% | |
| ! | TGGTATTTTCTGCTACTGCA+TGG | - | chr8_3:23807707-23807726 | None:intergenic | 40.0% |
| GTTACTTGGACAGCAAGTAA+TGG | - | chr8_3:23807829-23807848 | None:intergenic | 40.0% | |
| TGCATGCACAGTTAATCATG+TGG | + | chr8_3:23807873-23807892 | Msa1282840:CDS | 40.0% | |
| TCATGGGCCAAAAACTCAAA+TGG | + | chr8_3:23807931-23807950 | Msa1282840:CDS | 40.0% | |
| GGAAACCAACGTTCAAATGA+TGG | - | chr8_3:23807979-23807998 | None:intergenic | 40.0% | |
| ATCGGAGGTTGAATACAATC+TGG | - | chr8_3:23808000-23808019 | None:intergenic | 40.0% | |
| GTGAAAGGAAATTGAATCGG+AGG | - | chr8_3:23808015-23808034 | None:intergenic | 40.0% | |
| ! | TTTGCTGCATGGATTGTAGT+GGG | - | chr8_3:23807417-23807436 | None:intergenic | 40.0% |
| ! | ATTTGCTGCATGGATTGTAG+TGG | - | chr8_3:23807418-23807437 | None:intergenic | 40.0% |
| ! | CCCATTTGGAGTCAACTAAA+AGG | + | chr8_3:23807500-23807519 | Msa1282840:intron | 40.0% |
| !! | CCCTTTTAGTTGACTCCAAA+TGG | - | chr8_3:23807504-23807523 | None:intergenic | 40.0% |
| TACTGGTCGTCTCAAAATCA+AGG | + | chr8_3:23807620-23807639 | Msa1282840:CDS | 40.0% | |
| ! | TGGTATTTTCTGCTACTGCA+TGG | - | chr8_3:23807707-23807726 | None:intergenic | 40.0% |
| GTTACTTGGACAGCAAGTAA+TGG | - | chr8_3:23807829-23807848 | None:intergenic | 40.0% | |
| TGCATGCACAGTTAATCATG+TGG | + | chr8_3:23807873-23807892 | Msa1282840:CDS | 40.0% | |
| TCATGGGCCAAAAACTCAAA+TGG | + | chr8_3:23807931-23807950 | Msa1282840:CDS | 40.0% | |
| GGAAACCAACGTTCAAATGA+TGG | - | chr8_3:23807979-23807998 | None:intergenic | 40.0% | |
| ATCGGAGGTTGAATACAATC+TGG | - | chr8_3:23808000-23808019 | None:intergenic | 40.0% | |
| GTGAAAGGAAATTGAATCGG+AGG | - | chr8_3:23808015-23808034 | None:intergenic | 40.0% | |
| ! | TTGCTGCATGGATTGTAGTG+GGG | - | chr8_3:23807416-23807435 | None:intergenic | 45.0% |
| TTGAGACGACCAGTAAAAGG+CGG | - | chr8_3:23807615-23807634 | None:intergenic | 45.0% | |
| TCCATCATGTGCAACAATGC+AGG | + | chr8_3:23807669-23807688 | Msa1282840:CDS | 45.0% | |
| ACCTGCATTGTTGCACATGA+TGG | - | chr8_3:23807673-23807692 | None:intergenic | 45.0% | |
| GCAGAAAATACCAGTGTCGT+TGG | + | chr8_3:23807714-23807733 | Msa1282840:intron | 45.0% | |
| GTTAATCATGTGGTCGCTGA+TGG | + | chr8_3:23807883-23807902 | Msa1282840:CDS | 45.0% | |
| TTCAAAGCCAACTTAGAGGC+TGG | + | chr8_3:23808147-23808166 | Msa1282840:CDS | 45.0% | |
| CTTTGTACCAGCCTCTAAGT+TGG | - | chr8_3:23808157-23808176 | None:intergenic | 45.0% | |
| ! | TTGCTGCATGGATTGTAGTG+GGG | - | chr8_3:23807416-23807435 | None:intergenic | 45.0% |
| TTGAGACGACCAGTAAAAGG+CGG | - | chr8_3:23807615-23807634 | None:intergenic | 45.0% | |
| TCCATCATGTGCAACAATGC+AGG | + | chr8_3:23807669-23807688 | Msa1282840:CDS | 45.0% | |
| ACCTGCATTGTTGCACATGA+TGG | - | chr8_3:23807673-23807692 | None:intergenic | 45.0% | |
| GCAGAAAATACCAGTGTCGT+TGG | + | chr8_3:23807714-23807733 | Msa1282840:intron | 45.0% | |
| GTTAATCATGTGGTCGCTGA+TGG | + | chr8_3:23807883-23807902 | Msa1282840:CDS | 45.0% | |
| TTCAAAGCCAACTTAGAGGC+TGG | + | chr8_3:23808147-23808166 | Msa1282840:CDS | 45.0% | |
| CTTTGTACCAGCCTCTAAGT+TGG | - | chr8_3:23808157-23808176 | None:intergenic | 45.0% | |
| ! | TGCTGCATGGATTGTAGTGG+GGG | - | chr8_3:23807415-23807434 | None:intergenic | 50.0% |
| AGGATGTCAACCAACGACAC+TGG | - | chr8_3:23807727-23807746 | None:intergenic | 50.0% | |
| ! | GTGTCGTTGGTTGACATCCT+TGG | + | chr8_3:23807727-23807746 | Msa1282840:CDS | 50.0% |
| TAGGATGATACGTGGCTCCA+AGG | - | chr8_3:23807747-23807766 | None:intergenic | 50.0% | |
| ! | TCGCTGATGGCACATCGATT+TGG | + | chr8_3:23807896-23807915 | Msa1282840:CDS | 50.0% |
| ! | TGCTGCATGGATTGTAGTGG+GGG | - | chr8_3:23807415-23807434 | None:intergenic | 50.0% |
| AGGATGTCAACCAACGACAC+TGG | - | chr8_3:23807727-23807746 | None:intergenic | 50.0% | |
| ! | GTGTCGTTGGTTGACATCCT+TGG | + | chr8_3:23807727-23807746 | Msa1282840:CDS | 50.0% |
| TAGGATGATACGTGGCTCCA+AGG | - | chr8_3:23807747-23807766 | None:intergenic | 50.0% | |
| ! | TCGCTGATGGCACATCGATT+TGG | + | chr8_3:23807896-23807915 | Msa1282840:CDS | 50.0% |
| ! | CATGGATTGTAGTGGGGGAG+AGG | - | chr8_3:23807410-23807429 | None:intergenic | 55.0% |
| ! | CATGGATTGTAGTGGGGGAG+AGG | - | chr8_3:23807410-23807429 | None:intergenic | 55.0% |
| AGTGGGGGAGAGGACTGCGA+TGG | - | chr8_3:23807400-23807419 | None:intergenic | 65.0% | |
| AGTGGGGGAGAGGACTGCGA+TGG | - | chr8_3:23807400-23807419 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 23807390 | 23808251 | 23807390 | ID=Msa1282840;Name=Msa1282840 |
| chr8_3 | mRNA | 23807390 | 23808251 | 23807390 | ID=Msa1282840-mRNA-1;Parent=Msa1282840;Name=Msa1282840-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|0|0.33|3|0|280 |
| chr8_3 | exon | 23807390 | 23807509 | 23807390 | ID=Msa1282840-mRNA-1:exon:8443;Parent=Msa1282840-mRNA-1 |
| chr8_3 | exon | 23807522 | 23807710 | 23807522 | ID=Msa1282840-mRNA-1:exon:8444;Parent=Msa1282840-mRNA-1 |
| chr8_3 | exon | 23807718 | 23808251 | 23807718 | ID=Msa1282840-mRNA-1:exon:8445;Parent=Msa1282840-mRNA-1 |
| chr8_3 | CDS | 23807390 | 23807509 | 23807390 | ID=Msa1282840-mRNA-1:cds;Parent=Msa1282840-mRNA-1 |
| chr8_3 | CDS | 23807522 | 23807710 | 23807522 | ID=Msa1282840-mRNA-1:cds;Parent=Msa1282840-mRNA-1 |
| chr8_3 | CDS | 23807718 | 23808251 | 23807718 | ID=Msa1282840-mRNA-1:cds;Parent=Msa1282840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
