Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515950 | PNY17631.1 | 84.595 | 370 | 50 | 1 | 1 | 363 | 1 | 370 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515950 | sp|Q84VY3|STAD6_ARATH | 67.222 | 360 | 112 | 3 | 10 | 363 | 31 | 390 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515950 | A0A2K3PQT1 | 84.595 | 370 | 50 | 1 | 1 | 363 | 1 | 370 | 0.0 | 657 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa0515950 | 0.831809 | 1.352510e-55 | -8.615850e-47 |
| Msa0015710 | Msa0515950 | 0.803644 | 3.159298e-49 | -8.615850e-47 |
| Msa0019600 | Msa0515950 | 0.872096 | 4.134092e-67 | -8.615850e-47 |
| Msa0055450 | Msa0515950 | 0.818802 | 1.621104e-52 | -8.615850e-47 |
| Msa0066320 | Msa0515950 | 0.835168 | 1.963256e-56 | -8.615850e-47 |
| Msa0111750 | Msa0515950 | 0.851053 | 1.139767e-60 | -8.615850e-47 |
| Msa0124130 | Msa0515950 | 0.847262 | 1.292170e-59 | -8.615850e-47 |
| Msa0141120 | Msa0515950 | 0.860452 | 2.045506e-63 | -8.615850e-47 |
| Msa0147600 | Msa0515950 | 0.804249 | 2.364644e-49 | -8.615850e-47 |
| Msa0149140 | Msa0515950 | 0.859298 | 4.556729e-63 | -8.615850e-47 |
| Msa0152500 | Msa0515950 | 0.826628 | 2.444547e-54 | -8.615850e-47 |
| Msa0156250 | Msa0515950 | 0.827403 | 1.595318e-54 | -8.615850e-47 |
| Msa0185490 | Msa0515950 | 0.822471 | 2.326771e-53 | -8.615850e-47 |
| Msa0197100 | Msa0515950 | 0.819054 | 1.420346e-52 | -8.615850e-47 |
| Msa0203030 | Msa0515950 | 0.825310 | 5.027011e-54 | -8.615850e-47 |
| Msa0212080 | Msa0515950 | 0.825886 | 3.669661e-54 | -8.615850e-47 |
| Msa0212150 | Msa0515950 | 0.849013 | 4.244799e-60 | -8.615850e-47 |
| Msa0215640 | Msa0515950 | 0.814837 | 1.256756e-51 | -8.615850e-47 |
| Msa0217230 | Msa0515950 | 0.814499 | 1.493630e-51 | -8.615850e-47 |
| Msa0219190 | Msa0515950 | 0.812668 | 3.776811e-51 | -8.615850e-47 |
| Msa0373960 | Msa0515950 | 0.808309 | 3.299798e-50 | -8.615850e-47 |
| Msa0375680 | Msa0515950 | 0.811908 | 5.531986e-51 | -8.615850e-47 |
| Msa0392420 | Msa0515950 | 0.829320 | 5.499554e-55 | -8.615850e-47 |
| Msa0392460 | Msa0515950 | 0.823166 | 1.603681e-53 | -8.615850e-47 |
| Msa0392490 | Msa0515950 | 0.826904 | 2.099960e-54 | -8.615850e-47 |
| Msa0406000 | Msa0515950 | 0.902350 | 1.060232e-78 | -8.615850e-47 |
| Msa0415320 | Msa0515950 | 0.803532 | 3.332579e-49 | -8.615850e-47 |
| Msa0424330 | Msa0515950 | 0.945588 | 2.303821e-104 | -8.615850e-47 |
| Msa0424340 | Msa0515950 | 0.893101 | 8.597015e-75 | -8.615850e-47 |
| Msa0424350 | Msa0515950 | 0.870018 | 2.002437e-66 | -8.615850e-47 |
| Msa0441590 | Msa0515950 | 0.821205 | 4.570692e-53 | -8.615850e-47 |
| Msa0451400 | Msa0515950 | 0.901909 | 1.661878e-78 | -8.615850e-47 |
| Msa0479540 | Msa0515950 | 0.803210 | 3.886702e-49 | -8.615850e-47 |
| Msa0239030 | Msa0515950 | 0.822414 | 2.399014e-53 | -8.615850e-47 |
| Msa0242540 | Msa0515950 | 0.815532 | 8.810986e-52 | -8.615850e-47 |
| Msa0252630 | Msa0515950 | 0.844885 | 5.728835e-59 | -8.615850e-47 |
| Msa0252770 | Msa0515950 | 0.857836 | 1.244312e-62 | -8.615850e-47 |
| Msa0276740 | Msa0515950 | 0.804628 | 1.971697e-49 | -8.615850e-47 |
| Msa0280750 | Msa0515950 | 0.815805 | 7.660186e-52 | -8.615850e-47 |
| Msa0289920 | Msa0515950 | 0.848110 | 7.551913e-60 | -8.615850e-47 |
| Msa0291330 | Msa0515950 | 0.838880 | 2.210464e-57 | -8.615850e-47 |
| Msa0298240 | Msa0515950 | 0.816821 | 4.538432e-52 | -8.615850e-47 |
| Msa0306120 | Msa0515950 | 0.850520 | 1.610781e-60 | -8.615850e-47 |
| Msa0316680 | Msa0515950 | 0.812846 | 3.451614e-51 | -8.615850e-47 |
| Msa0322830 | Msa0515950 | 0.807203 | 5.667650e-50 | -8.615850e-47 |
| Msa0322840 | Msa0515950 | 0.833563 | 4.962883e-56 | -8.615850e-47 |
| Msa0322860 | Msa0515950 | 0.811614 | 6.410048e-51 | -8.615850e-47 |
| Msa0329620 | Msa0515950 | 0.852500 | 4.432948e-61 | -8.615850e-47 |
| Msa0333700 | Msa0515950 | 0.823600 | 1.269577e-53 | -8.615850e-47 |
| Msa0340480 | Msa0515950 | 0.819255 | 1.278716e-52 | -8.615850e-47 |
| Msa0343660 | Msa0515950 | 0.846070 | 2.735753e-59 | -8.615850e-47 |
| Msa0344570 | Msa0515950 | 0.814310 | 1.644016e-51 | -8.615850e-47 |
| Msa0351770 | Msa0515950 | 0.844831 | 5.924633e-59 | -8.615850e-47 |
| Msa0359250 | Msa0515950 | 0.892757 | 1.182922e-74 | -8.615850e-47 |
| Msa0487570 | Msa0515950 | 0.832788 | 7.739734e-56 | -8.615850e-47 |
| Msa0487630 | Msa0515950 | 0.823113 | 1.649984e-53 | -8.615850e-47 |
| Msa0492190 | Msa0515950 | 0.886058 | 4.756046e-72 | -8.615850e-47 |
| Msa0515950 | Msa0534930 | 0.858149 | 1.004042e-62 | -8.615850e-47 |
| Msa0515950 | Msa0535040 | 0.834583 | 2.756556e-56 | -8.615850e-47 |
| Msa0515950 | Msa0575740 | 0.842062 | 3.252296e-58 | -8.615850e-47 |
| Msa0515950 | Msa0591790 | 0.855199 | 7.402651e-62 | -8.615850e-47 |
| Msa0515950 | Msa0591800 | 0.852479 | 4.493041e-61 | -8.615850e-47 |
| Msa0515950 | Msa0594090 | 0.846421 | 2.195164e-59 | -8.615850e-47 |
| Msa0515950 | Msa0641250 | 0.807834 | 4.165680e-50 | -8.615850e-47 |
| Msa0515950 | Msa0669840 | 0.883642 | 3.776059e-71 | -8.615850e-47 |
| Msa0515950 | Msa0682360 | 0.803337 | 3.658444e-49 | -8.615850e-47 |
| Msa0515950 | Msa0709450 | 0.803719 | 3.048191e-49 | -8.615850e-47 |
| Msa0515950 | Msa0711320 | 0.818964 | 1.488702e-52 | -8.615850e-47 |
| Msa0515950 | Msa0725860 | 0.813845 | 2.082118e-51 | -8.615850e-47 |
| Msa0515950 | Msa0739580 | 0.884898 | 1.293938e-71 | -8.615850e-47 |
| Msa0515950 | Msa0748400 | 0.808697 | 2.727095e-50 | -8.615850e-47 |
| Msa0515950 | Msa0751890 | 0.838252 | 3.212081e-57 | -8.615850e-47 |
| Msa0515950 | Msa0752840 | 0.825809 | 3.827967e-54 | -8.615850e-47 |
| Msa0515950 | Msa0764820 | 0.815029 | 1.139889e-51 | -8.615850e-47 |
| Msa0515950 | Msa0770290 | 0.839227 | 1.797362e-57 | -8.615850e-47 |
| Msa0515950 | Msa0782360 | 0.853574 | 2.184193e-61 | -8.615850e-47 |
| Msa0515950 | Msa0819890 | 0.833958 | 3.953296e-56 | -8.615850e-47 |
| Msa0515950 | Msa0823400 | 0.816234 | 6.143425e-52 | -8.615850e-47 |
| Msa0515950 | Msa0828830 | 0.812323 | 4.492065e-51 | -8.615850e-47 |
| Msa0515950 | Msa0831940 | 0.839849 | 1.238682e-57 | -8.615850e-47 |
| Msa0515950 | Msa0844560 | 0.814960 | 1.180502e-51 | -8.615850e-47 |
| Msa0515950 | Msa0849280 | 0.801361 | 9.339017e-49 | -8.615850e-47 |
| Msa0515950 | Msa0851020 | 0.806770 | 6.999797e-50 | -8.615850e-47 |
| Msa0515950 | Msa0860160 | 0.819301 | 1.247745e-52 | -8.615850e-47 |
| Msa0515950 | Msa0860280 | 0.870554 | 1.336767e-66 | -8.615850e-47 |
| Msa0515950 | Msa0867350 | 0.852284 | 5.105449e-61 | -8.615850e-47 |
| Msa0515950 | Msa0898730 | 0.857422 | 1.649859e-62 | -8.615850e-47 |
| Msa0515950 | Msa0916640 | 0.831973 | 1.232316e-55 | -8.615850e-47 |
| Msa0515950 | Msa0922750 | 0.808818 | 2.569317e-50 | -8.615850e-47 |
| Msa0515950 | Msa0927120 | 0.809638 | 1.714141e-50 | -8.615850e-47 |
| Msa0515950 | Msa0929870 | 0.859277 | 4.622622e-63 | -8.615850e-47 |
| Msa0515950 | Msa0941820 | 0.810582 | 1.072911e-50 | -8.615850e-47 |
| Msa0515950 | Msa0944760 | 0.822994 | 1.758707e-53 | -8.615850e-47 |
| Msa0515950 | Msa0944880 | 0.803868 | 2.838527e-49 | -8.615850e-47 |
| Msa0515950 | Msa0946210 | 0.840310 | 9.392680e-58 | -8.615850e-47 |
| Msa0515950 | Msa0953540 | 0.835304 | 1.814263e-56 | -8.615850e-47 |
| Msa0515950 | Msa0961560 | 0.844389 | 7.790532e-59 | -8.615850e-47 |
| Msa0515950 | Msa0964840 | 0.801463 | 8.898254e-49 | -8.615850e-47 |
| Msa0515950 | Msa0965310 | 0.808875 | 2.498412e-50 | -8.615850e-47 |
| Msa0515950 | Msa0979510 | 0.817545 | 3.119463e-52 | -8.615850e-47 |
| Msa0515950 | Msa0996270 | 0.837938 | 3.867022e-57 | -8.615850e-47 |
| Msa0515950 | Msa0999300 | 0.845224 | 4.641467e-59 | -8.615850e-47 |
| Msa0515950 | Msa0999320 | 0.817990 | 2.475821e-52 | -8.615850e-47 |
| Msa0515950 | Msa0999340 | 0.812976 | 3.233405e-51 | -8.615850e-47 |
| Msa0515950 | Msa0999350 | 0.804813 | 1.804121e-49 | -8.615850e-47 |
| Msa0515950 | Msa0999360 | 0.806771 | 6.995011e-50 | -8.615850e-47 |
| Msa0515950 | Msa0999380 | 0.807528 | 4.838079e-50 | -8.615850e-47 |
| Msa0515950 | Msa0999390 | 0.808553 | 2.927275e-50 | -8.615850e-47 |
| Msa0515950 | Msa0999400 | 0.801305 | 9.587247e-49 | -8.615850e-47 |
| Msa0515950 | Msa0999410 | 0.809666 | 1.690391e-50 | -8.615850e-47 |
| Msa0515950 | Msa0999700 | 0.803881 | 2.820675e-49 | -8.615850e-47 |
| Msa0515950 | Msa1001870 | 0.817374 | 3.408031e-52 | -8.615850e-47 |
| Msa0515950 | Msa1001890 | 0.811952 | 5.411072e-51 | -8.615850e-47 |
| Msa0515950 | Msa1037770 | 0.846566 | 2.003568e-59 | -8.615850e-47 |
| Msa0515950 | Msa1037890 | 0.883448 | 4.447879e-71 | -8.615850e-47 |
| Msa0515950 | Msa1037900 | 0.853574 | 2.183575e-61 | -8.615850e-47 |
| Msa0515950 | Msa1037910 | 0.834267 | 3.308017e-56 | -8.615850e-47 |
| Msa0515950 | Msa1047990 | 0.803153 | 3.993989e-49 | -8.615850e-47 |
| Msa0515950 | Msa1081570 | 0.805380 | 1.372997e-49 | -8.615850e-47 |
| Msa0515950 | Msa1084520 | 0.869480 | 3.000813e-66 | -8.615850e-47 |
| Msa0515950 | Msa1092020 | 0.823981 | 1.033571e-53 | -8.615850e-47 |
| Msa0515950 | Msa1125810 | 0.823931 | 1.061596e-53 | -8.615850e-47 |
| Msa0515950 | Msa1129950 | 0.818386 | 2.014155e-52 | -8.615850e-47 |
| Msa0515950 | Msa1129960 | 0.825934 | 3.575646e-54 | -8.615850e-47 |
| Msa0515950 | Msa1129970 | 0.819259 | 1.275855e-52 | -8.615850e-47 |
| Msa0515950 | Msa1130010 | 0.834355 | 3.145070e-56 | -8.615850e-47 |
| Msa0515950 | Msa1135380 | 0.834783 | 2.454190e-56 | -8.615850e-47 |
| Msa0515950 | Msa1145020 | 0.838601 | 2.609654e-57 | -8.615850e-47 |
| Msa0515950 | Msa1171310 | 0.857123 | 2.021798e-62 | -8.615850e-47 |
| Msa0515950 | Msa1201110 | 0.830448 | 2.919658e-55 | -8.615850e-47 |
| Msa0515950 | Msa1201160 | 0.870127 | 1.844432e-66 | -8.615850e-47 |
| Msa0515950 | Msa1228190 | 0.857170 | 1.958913e-62 | -8.615850e-47 |
| Msa0515950 | Msa1271260 | 0.825423 | 4.726403e-54 | -8.615850e-47 |
| Msa0515950 | Msa1282840 | 0.802892 | 4.522110e-49 | -8.615850e-47 |
| Msa0515950 | Msa1294290 | 0.857595 | 1.466773e-62 | -8.615850e-47 |
| Msa0515950 | Msa1305510 | 0.866478 | 2.768044e-65 | -8.615850e-47 |
| Msa0515950 | Msa1326630 | 0.803533 | 3.331604e-49 | -8.615850e-47 |
| Msa0515950 | Msa1336620 | 0.809890 | 1.513245e-50 | -8.615850e-47 |
| Msa0515950 | Msa1378870 | 0.841720 | 4.003482e-58 | -8.615850e-47 |
| Msa0515950 | Msa1379970 | 0.825322 | 4.994208e-54 | -8.615850e-47 |
| Msa0515950 | Msa1389050 | 0.809950 | 1.468582e-50 | -8.615850e-47 |
| Msa0515950 | Msa1394890 | 0.827786 | 1.290377e-54 | -8.615850e-47 |
| Msa0515950 | Msa1406780 | 0.886614 | 2.933574e-72 | -8.615850e-47 |
| Msa0515950 | Msa1420060 | 0.827527 | 1.489235e-54 | -8.615850e-47 |
| Msa0515950 | Msa1421550 | 0.857562 | 1.499842e-62 | -8.615850e-47 |
| Msa0515950 | Msa1423460 | 0.825000 | 5.950116e-54 | -8.615850e-47 |
| Msa0515950 | Msa1431850 | 0.892652 | 1.302517e-74 | -8.615850e-47 |
| Msa0515950 | Msa1435480 | 0.816435 | 5.538035e-52 | -8.615850e-47 |
| Msa0515950 | Msa1449940 | 0.813164 | 2.940628e-51 | -8.615850e-47 |
| Msa0515950 | Msa1455320 | 0.849052 | 4.141509e-60 | -8.615850e-47 |
| Msa0515950 | Msa1459530 | 0.812915 | 3.334401e-51 | -8.615850e-47 |
| Msa0515950 | Msa1461060 | 0.852404 | 4.720683e-61 | -8.615850e-47 |
| Msa0515950 | Msa1462530 | 0.823807 | 1.135538e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515950 | MtrunA17_Chr3g0125981 | 83.243 | 370 | 56 | 1 | 1 | 364 | 1 | 370 | 0.0 | 653 |
| Msa0515950 | MtrunA17_Chr3g0126011 | 74.380 | 363 | 92 | 1 | 2 | 363 | 3 | 365 | 0.0 | 581 |
| Msa0515950 | MtrunA17_Chr3g0125991 | 74.105 | 363 | 93 | 1 | 2 | 363 | 3 | 365 | 0.0 | 577 |
| Msa0515950 | MtrunA17_Chr3g0125781 | 70.924 | 368 | 102 | 1 | 1 | 363 | 1 | 368 | 0.0 | 560 |
| Msa0515950 | MtrunA17_Chr1g0159321 | 72.829 | 357 | 93 | 2 | 9 | 362 | 33 | 388 | 0.0 | 544 |
| Msa0515950 | MtrunA17_Chr4g0045661 | 64.688 | 337 | 116 | 2 | 27 | 362 | 57 | 391 | 5.27e-165 | 466 |
| Msa0515950 | MtrunA17_Chr5g0406961 | 64.688 | 337 | 116 | 2 | 27 | 362 | 108 | 442 | 1.36e-164 | 467 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515950 | AT1G43800.1 | 67.222 | 360 | 112 | 3 | 10 | 363 | 31 | 390 | 0.0 | 511 |
| Msa0515950 | AT3G02630.1 | 62.722 | 338 | 122 | 2 | 27 | 362 | 59 | 394 | 1.07e-159 | 453 |
| Msa0515950 | AT3G02610.2 | 58.981 | 373 | 141 | 5 | 1 | 362 | 40 | 411 | 1.65e-159 | 454 |
| Msa0515950 | AT3G02610.1 | 58.981 | 373 | 141 | 5 | 1 | 362 | 38 | 409 | 2.05e-159 | 453 |
| Msa0515950 | AT5G16230.1 | 59.563 | 366 | 137 | 6 | 6 | 362 | 36 | 399 | 1.93e-158 | 451 |
| Msa0515950 | AT2G43710.2 | 62.611 | 337 | 123 | 2 | 27 | 362 | 65 | 399 | 1.72e-157 | 448 |
| Msa0515950 | AT2G43710.1 | 62.611 | 337 | 123 | 2 | 27 | 362 | 65 | 399 | 2.33e-157 | 447 |
| Msa0515950 | AT3G02620.2 | 57.632 | 380 | 142 | 7 | 1 | 362 | 26 | 404 | 4.63e-157 | 447 |
| Msa0515950 | AT3G02620.1 | 57.632 | 380 | 142 | 7 | 1 | 362 | 23 | 401 | 5.19e-157 | 447 |
| Msa0515950 | AT5G16240.1 | 60.651 | 338 | 129 | 2 | 27 | 362 | 57 | 392 | 1.33e-153 | 438 |
| Msa0515950 | AT5G16230.2 | 62.654 | 324 | 116 | 4 | 43 | 362 | 1 | 323 | 3.83e-151 | 429 |
| Msa0515950 | AT3G02620.3 | 61.656 | 326 | 118 | 4 | 43 | 362 | 1 | 325 | 1.81e-148 | 422 |
Find 98 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGCCTTTAGGTGGCATTT+TGG | 0.216719 | 3_4:+67332900 | None:intergenic |
| CATATCAATCATGGTTAAAT+AGG | 0.234910 | 3_4:-67332599 | Msa0515950:CDS |
| CTCTTGTAGCCTCCTAATCT+TGG | 0.305981 | 3_4:+67331606 | None:intergenic |
| GAGACATTGAGTGTGTCTTT+TGG | 0.306328 | 3_4:+67332856 | None:intergenic |
| CTTGAAAATTTCTTTCTTCT+CGG | 0.318913 | 3_4:+67332833 | None:intergenic |
| ATGGCAATGTGCACCCAATT+AGG | 0.331432 | 3_4:-67332927 | Msa0515950:CDS |
| CTTGATTGGACGATGGGGTT+TGG | 0.337060 | 3_4:-67331692 | Msa0515950:CDS |
| AATAGTTTGGAATTCTTGAT+TGG | 0.340998 | 3_4:-67331706 | Msa0515950:CDS |
| CCAGCATTCTTCCACGGGTT+TGG | 0.343592 | 3_4:+67332770 | None:intergenic |
| TTGTTTGTGGTGTAGGATAT+AGG | 0.348757 | 3_4:-67332084 | Msa0515950:intron |
| TTGAAAATTTCTTTCTTCTC+GGG | 0.360930 | 3_4:+67332834 | None:intergenic |
| ATTTAAGACCCAACTAAACT+TGG | 0.375496 | 3_4:+67331552 | None:intergenic |
| GGGCTGTATGGACACGCTCT+TGG | 0.379466 | 3_4:-67332533 | Msa0515950:CDS |
| ACCATCATGCATCAAGTGTC+CGG | 0.383908 | 3_4:+67331804 | None:intergenic |
| TTTAACCATGATTGATATGT+AGG | 0.392590 | 3_4:+67332603 | None:intergenic |
| TAGTGACTACATCAATAGTT+TGG | 0.398335 | 3_4:-67331719 | Msa0515950:CDS |
| TTTCAAGTCATTAGAGAGTT+GGG | 0.400750 | 3_4:-67332817 | Msa0515950:CDS |
| GCACCAATCCGTGGGCTGTA+TGG | 0.414955 | 3_4:-67332545 | Msa0515950:CDS |
| CCCGTGCTTGCGCGCATATG+TGG | 0.421061 | 3_4:-67331955 | Msa0515950:CDS |
| TGGGGTTTGGAGAAGCTAGA+AGG | 0.430673 | 3_4:-67331679 | Msa0515950:CDS |
| GTGGGATTGCACCCAAGATT+AGG | 0.432028 | 3_4:-67331618 | Msa0515950:CDS |
| ATTACTCATTATTTCTGCTA+TGG | 0.437217 | 3_4:+67331840 | None:intergenic |
| AGATGAAGCCCAAGTTTAGT+TGG | 0.441963 | 3_4:-67331561 | Msa0515950:CDS |
| GGAATTCTTGATTGGACGAT+GGG | 0.442137 | 3_4:-67331698 | Msa0515950:CDS |
| AAAACTACAAAATAATCATC+TGG | 0.449782 | 3_4:+67332657 | None:intergenic |
| AAGACTATCCAATACTTGAT+TGG | 0.452984 | 3_4:-67332429 | Msa0515950:CDS |
| CAAAACTTATCTCTATCTAT+CGG | 0.457872 | 3_4:-67332478 | Msa0515950:CDS |
| TCAATCATGGTTAAATAGGC+TGG | 0.460883 | 3_4:-67332595 | Msa0515950:CDS |
| ATCTCCATGTCTATTCTCTT+CGG | 0.464831 | 3_4:+67332506 | None:intergenic |
| CATGGTTAAATAGGCTGGAT+GGG | 0.476200 | 3_4:-67332590 | Msa0515950:CDS |
| TCTTGTAGCCTCCTAATCTT+GGG | 0.478217 | 3_4:+67331607 | None:intergenic |
| TCTGCAGTGGCACAACGTAT+TGG | 0.480314 | 3_4:-67331754 | Msa0515950:CDS |
| GCCACATATGCGCGCAAGCA+CGG | 0.480589 | 3_4:+67331954 | None:intergenic |
| TCTGACGATAATGATGGATC+TGG | 0.483631 | 3_4:+67332729 | None:intergenic |
| ACACTTGATGCATGATGGTC+AGG | 0.485164 | 3_4:-67331800 | Msa0515950:CDS |
| CCACATATGCGCGCAAGCAC+GGG | 0.485901 | 3_4:+67331955 | None:intergenic |
| ATGGATGTCATCGTCTCAGT+GGG | 0.494308 | 3_4:+67331859 | None:intergenic |
| GCATACACAAAGGTCTTGTA+CGG | 0.494338 | 3_4:+67332048 | None:intergenic |
| AAAACTTATCTCTATCTATC+GGG | 0.495212 | 3_4:-67332477 | Msa0515950:CDS |
| TTTGGGAAGGGGCCTTTAGG+TGG | 0.495405 | 3_4:+67332892 | None:intergenic |
| GATGAAGCCCAAGTTTAGTT+GGG | 0.504326 | 3_4:-67331560 | Msa0515950:CDS |
| GGCTGCCAGCATTCTTCCAC+GGG | 0.506773 | 3_4:+67332765 | None:intergenic |
| ATCCAATACTTGATTGGAGC+TGG | 0.507157 | 3_4:-67332423 | Msa0515950:CDS |
| GATGGGGTTGCAGATGAGAC+TGG | 0.508475 | 3_4:-67332573 | Msa0515950:CDS |
| TCATGGTTAAATAGGCTGGA+TGG | 0.509673 | 3_4:-67332591 | Msa0515950:CDS |
| TTATCTCTATCTATCGGGTC+GGG | 0.520159 | 3_4:-67332472 | Msa0515950:CDS |
| TGGCTGCCAGCATTCTTCCA+CGG | 0.522862 | 3_4:+67332764 | None:intergenic |
| TGCCAGCTCCAATCAAGTAT+TGG | 0.523085 | 3_4:+67332421 | None:intergenic |
| CATTGCCTACATATCAATCA+TGG | 0.523943 | 3_4:-67332608 | Msa0515950:CDS |
| TTTAAGACCCAACTAAACTT+GGG | 0.524188 | 3_4:+67331553 | None:intergenic |
| CTTATCTCTATCTATCGGGT+CGG | 0.528634 | 3_4:-67332473 | Msa0515950:CDS |
| AGTAATAACATAACGATGCC+CGG | 0.531912 | 3_4:-67331823 | Msa0515950:CDS |
| CTTCAATCATTTCTCTGCAG+TGG | 0.532097 | 3_4:-67331767 | Msa0515950:CDS |
| ACCACCAAAATGCCACCTAA+AGG | 0.539344 | 3_4:-67332904 | Msa0515950:CDS |
| TCTTCCACGGGTTTGGCTAG+TGG | 0.539347 | 3_4:+67332777 | None:intergenic |
| TTGCTAGCAAACAATGATGA+TGG | 0.539995 | 3_4:-67332946 | Msa0515950:exon |
| AAAAGTGGCTCGCTCTTGAA+AGG | 0.540037 | 3_4:+67332023 | None:intergenic |
| CGTGCACAGGAGATAGTATG+TGG | 0.543167 | 3_4:-67331637 | Msa0515950:CDS |
| CCAAACCCGTGGAAGAATGC+TGG | 0.544399 | 3_4:-67332770 | Msa0515950:CDS |
| CCATCATGCATCAAGTGTCC+GGG | 0.545387 | 3_4:+67331805 | None:intergenic |
| AACTCATCTGACGATAATGA+TGG | 0.549146 | 3_4:+67332723 | None:intergenic |
| TGTCCATACAGCCCACGGAT+TGG | 0.549896 | 3_4:+67332542 | None:intergenic |
| TTAGCACTTTGACTTTCACT+TGG | 0.560683 | 3_4:+67331519 | None:intergenic |
| TAGCATGAGCATGCTAGCTA+AGG | 0.570725 | 3_4:-67331989 | Msa0515950:CDS |
| ATGTTAATGAGCAAAATTTG+AGG | 0.579659 | 3_4:+67331442 | None:intergenic |
| TCCTCTCATATGCAATCTCA+TGG | 0.582401 | 3_4:+67331908 | None:intergenic |
| TGGAATTCTTGATTGGACGA+TGG | 0.586382 | 3_4:-67331699 | Msa0515950:CDS |
| GCTAGAAGGTTTAACAAGCG+AGG | 0.587418 | 3_4:-67331665 | Msa0515950:CDS |
| GAGAAATGATTGAAGAGATG+TGG | 0.589359 | 3_4:+67331775 | None:intergenic |
| AGAAATGATTGAAGAGATGT+GGG | 0.590976 | 3_4:+67331776 | None:intergenic |
| TGTGGAGAAGCTTCTAGAAG+TGG | 0.591080 | 3_4:-67331884 | Msa0515950:CDS |
| CCCGGACACTTGATGCATGA+TGG | 0.594778 | 3_4:-67331805 | Msa0515950:CDS |
| ATACTTGATTGGAGCTGGCA+TGG | 0.595623 | 3_4:-67332418 | Msa0515950:intron |
| GCTACCGTCTGACAGAAAAG+TGG | 0.598273 | 3_4:+67332008 | None:intergenic |
| CTGGTTCAAGCACCAATCCG+TGG | 0.603080 | 3_4:-67332554 | Msa0515950:CDS |
| GGGTCGGGTTGACATGCTCA+TGG | 0.603142 | 3_4:-67332457 | Msa0515950:CDS |
| AAGCGAGGGAAAACGTGCAC+AGG | 0.604155 | 3_4:-67331650 | Msa0515950:CDS |
| ATGGTTAAATAGGCTGGATG+GGG | 0.608274 | 3_4:-67332589 | Msa0515950:CDS |
| AATCTCATGGCGCTTCTCAT+CGG | 0.610232 | 3_4:+67331921 | None:intergenic |
| TATGGATGTCATCGTCTCAG+TGG | 0.611032 | 3_4:+67331858 | None:intergenic |
| GATTGCATATGAGAGGATTG+TGG | 0.611094 | 3_4:-67331902 | Msa0515950:CDS |
| GGATTGCACCCAAGATTAGG+AGG | 0.611312 | 3_4:-67331615 | Msa0515950:CDS |
| GAGCGTGTCCATACAGCCCA+CGG | 0.625608 | 3_4:+67332537 | None:intergenic |
| CTAGAAGGTTTAACAAGCGA+GGG | 0.625610 | 3_4:-67331664 | Msa0515950:CDS |
| TGGTTCAAGCACCAATCCGT+GGG | 0.630954 | 3_4:-67332553 | Msa0515950:CDS |
| CATACACAAAGGTCTTGTAC+GGG | 0.631913 | 3_4:+67332049 | None:intergenic |
| GCCATGAGATTGCATATGAG+AGG | 0.633509 | 3_4:-67331909 | Msa0515950:CDS |
| TGAGTTCGTCGATCAAGTCA+AGG | 0.640040 | 3_4:-67332706 | Msa0515950:CDS |
| AGCATGCTAGCTAAGGAGAG+AGG | 0.659826 | 3_4:-67331982 | Msa0515950:CDS |
| GAATTCTTGATTGGACGATG+GGG | 0.680323 | 3_4:-67331697 | Msa0515950:CDS |
| ACTGCCGAAGAGAATAGACA+TGG | 0.683343 | 3_4:-67332510 | Msa0515950:CDS |
| TTGAAAGGCTGCATACACAA+AGG | 0.689402 | 3_4:+67332038 | None:intergenic |
| GGATCTGGCAACAAATCATG+TGG | 0.701954 | 3_4:+67332744 | None:intergenic |
| GCTGCCACTAGCCAAACCCG+TGG | 0.706140 | 3_4:-67332781 | Msa0515950:CDS |
| GTGCACAGGAGATAGTATGT+GGG | 0.715529 | 3_4:-67331636 | Msa0515950:CDS |
| ATAATCATCTGGAAGCTCAG+CGG | 0.717870 | 3_4:+67332668 | None:intergenic |
| TGGATGTCATCGTCTCAGTG+GGG | 0.735788 | 3_4:+67331860 | None:intergenic |
| AGTGGGTGACATGATCACTG+AGG | 0.758505 | 3_4:-67332634 | Msa0515950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATACACATGTATTAT+CGG | + | chr3_4:67332296-67332315 | None:intergenic | 15.0% |
| !! | ATTTAATACACATGTATTAT+CGG | + | chr3_4:67332296-67332315 | None:intergenic | 15.0% |
| !! | AAAACTACAAAATAATCATC+TGG | + | chr3_4:67331761-67331780 | None:intergenic | 20.0% |
| !!! | TGATTATTTTGTAGTTTTAG+TGG | - | chr3_4:67331763-67331782 | Msa0515950:CDS | 20.0% |
| !!! | GATTATTTTGTAGTTTTAGT+GGG | - | chr3_4:67331764-67331783 | Msa0515950:CDS | 20.0% |
| !! | ATAGAATTCACTAAATCATT+TGG | - | chr3_4:67332203-67332222 | Msa0515950:intron | 20.0% |
| !! | AAAACTACAAAATAATCATC+TGG | + | chr3_4:67331761-67331780 | None:intergenic | 20.0% |
| !!! | TGATTATTTTGTAGTTTTAG+TGG | - | chr3_4:67331763-67331782 | Msa0515950:CDS | 20.0% |
| !!! | GATTATTTTGTAGTTTTAGT+GGG | - | chr3_4:67331764-67331783 | Msa0515950:CDS | 20.0% |
| !! | ATAGAATTCACTAAATCATT+TGG | - | chr3_4:67332203-67332222 | Msa0515950:intron | 20.0% |
| ! | TTGAAAATTTCTTTCTTCTC+GGG | + | chr3_4:67331584-67331603 | None:intergenic | 25.0% |
| ! | CTTGAAAATTTCTTTCTTCT+CGG | + | chr3_4:67331585-67331604 | None:intergenic | 25.0% |
| ! | TTTAACCATGATTGATATGT+AGG | + | chr3_4:67331815-67331834 | None:intergenic | 25.0% |
| ! | CATATCAATCATGGTTAAAT+AGG | - | chr3_4:67331816-67331835 | Msa0515950:CDS | 25.0% |
| ! | CAAAACTTATCTCTATCTAT+CGG | - | chr3_4:67331937-67331956 | Msa0515950:CDS | 25.0% |
| ! | AAAACTTATCTCTATCTATC+GGG | - | chr3_4:67331938-67331957 | Msa0515950:CDS | 25.0% |
| ! | TTCGAACTAATCAATTTACA+TGG | - | chr3_4:67332131-67332150 | Msa0515950:intron | 25.0% |
| !!! | ATTACTCATTATTTCTGCTA+TGG | + | chr3_4:67332578-67332597 | None:intergenic | 25.0% |
| !! | AATAGTTTGGAATTCTTGAT+TGG | - | chr3_4:67332709-67332728 | Msa0515950:CDS | 25.0% |
| ! | AATGGTACTATGAAAAAACA+AGG | - | chr3_4:67332935-67332954 | Msa0515950:CDS | 25.0% |
| ! | TTGAAAATTTCTTTCTTCTC+GGG | + | chr3_4:67331584-67331603 | None:intergenic | 25.0% |
| ! | CTTGAAAATTTCTTTCTTCT+CGG | + | chr3_4:67331585-67331604 | None:intergenic | 25.0% |
| ! | TTTAACCATGATTGATATGT+AGG | + | chr3_4:67331815-67331834 | None:intergenic | 25.0% |
| ! | CATATCAATCATGGTTAAAT+AGG | - | chr3_4:67331816-67331835 | Msa0515950:CDS | 25.0% |
| ! | CAAAACTTATCTCTATCTAT+CGG | - | chr3_4:67331937-67331956 | Msa0515950:CDS | 25.0% |
| ! | AAAACTTATCTCTATCTATC+GGG | - | chr3_4:67331938-67331957 | Msa0515950:CDS | 25.0% |
| ! | TTCGAACTAATCAATTTACA+TGG | - | chr3_4:67332131-67332150 | Msa0515950:intron | 25.0% |
| !!! | ATTACTCATTATTTCTGCTA+TGG | + | chr3_4:67332578-67332597 | None:intergenic | 25.0% |
| !! | AATAGTTTGGAATTCTTGAT+TGG | - | chr3_4:67332709-67332728 | Msa0515950:CDS | 25.0% |
| ! | AATGGTACTATGAAAAAACA+AGG | - | chr3_4:67332935-67332954 | Msa0515950:CDS | 25.0% |
| !! | ATTTTAGCACTTTTTGGGAA+GGG | + | chr3_4:67331538-67331557 | None:intergenic | 30.0% |
| !! | TTGGGATTTTAGCACTTTTT+GGG | + | chr3_4:67331543-67331562 | None:intergenic | 30.0% |
| !! | TTTGGGATTTTAGCACTTTT+TGG | + | chr3_4:67331544-67331563 | None:intergenic | 30.0% |
| !!! | TTTTCAAGTCATTAGAGAGT+TGG | - | chr3_4:67331597-67331616 | Msa0515950:CDS | 30.0% |
| ! | TTTCAAGTCATTAGAGAGTT+GGG | - | chr3_4:67331598-67331617 | Msa0515950:CDS | 30.0% |
| AAGACTATCCAATACTTGAT+TGG | - | chr3_4:67331986-67332005 | Msa0515950:CDS | 30.0% | |
| TTTAGTGAATTCTATGTGAG+TGG | + | chr3_4:67332198-67332217 | None:intergenic | 30.0% | |
| TCAAACTAATCCATTGTTTG+TGG | - | chr3_4:67332318-67332337 | Msa0515950:intron | 30.0% | |
| AGAAATGATTGAAGAGATGT+GGG | + | chr3_4:67332642-67332661 | None:intergenic | 30.0% | |
| TAGTGACTACATCAATAGTT+TGG | - | chr3_4:67332696-67332715 | Msa0515950:CDS | 30.0% | |
| ! | TTTAAGACCCAACTAAACTT+GGG | + | chr3_4:67332865-67332884 | None:intergenic | 30.0% |
| ! | ATTTAAGACCCAACTAAACT+TGG | + | chr3_4:67332866-67332885 | None:intergenic | 30.0% |
| !! | ATTTTAGCACTTTTTGGGAA+GGG | + | chr3_4:67331538-67331557 | None:intergenic | 30.0% |
| !! | TTGGGATTTTAGCACTTTTT+GGG | + | chr3_4:67331543-67331562 | None:intergenic | 30.0% |
| !! | TTTGGGATTTTAGCACTTTT+TGG | + | chr3_4:67331544-67331563 | None:intergenic | 30.0% |
| !!! | TTTTCAAGTCATTAGAGAGT+TGG | - | chr3_4:67331597-67331616 | Msa0515950:CDS | 30.0% |
| ! | TTTCAAGTCATTAGAGAGTT+GGG | - | chr3_4:67331598-67331617 | Msa0515950:CDS | 30.0% |
| AAGACTATCCAATACTTGAT+TGG | - | chr3_4:67331986-67332005 | Msa0515950:CDS | 30.0% | |
| TTTAGTGAATTCTATGTGAG+TGG | + | chr3_4:67332198-67332217 | None:intergenic | 30.0% | |
| TCAAACTAATCCATTGTTTG+TGG | - | chr3_4:67332318-67332337 | Msa0515950:intron | 30.0% | |
| AGAAATGATTGAAGAGATGT+GGG | + | chr3_4:67332642-67332661 | None:intergenic | 30.0% | |
| TAGTGACTACATCAATAGTT+TGG | - | chr3_4:67332696-67332715 | Msa0515950:CDS | 30.0% | |
| ! | TTTAAGACCCAACTAAACTT+GGG | + | chr3_4:67332865-67332884 | None:intergenic | 30.0% |
| ! | ATTTAAGACCCAACTAAACT+TGG | + | chr3_4:67332866-67332885 | None:intergenic | 30.0% |
| TTGCTAGCAAACAATGATGA+TGG | - | chr3_4:67331469-67331488 | Msa0515950:three_prime_UTR | 35.0% | |
| !! | TTTTAGCACTTTTTGGGAAG+GGG | + | chr3_4:67331537-67331556 | None:intergenic | 35.0% |
| !! | GATTTTAGCACTTTTTGGGA+AGG | + | chr3_4:67331539-67331558 | None:intergenic | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | + | chr3_4:67331561-67331580 | None:intergenic | 35.0% |
| AACTCATCTGACGATAATGA+TGG | + | chr3_4:67331695-67331714 | None:intergenic | 35.0% | |
| CATTGCCTACATATCAATCA+TGG | - | chr3_4:67331807-67331826 | Msa0515950:CDS | 35.0% | |
| TCAATCATGGTTAAATAGGC+TGG | - | chr3_4:67331820-67331839 | Msa0515950:CDS | 35.0% | |
| ATCTCCATGTCTATTCTCTT+CGG | + | chr3_4:67331912-67331931 | None:intergenic | 35.0% | |
| AAGACCAGAGTTATGGTAAA+AGG | + | chr3_4:67332112-67332131 | None:intergenic | 35.0% | |
| AAAGAGAGAAAGTGAGGAAA+AGG | + | chr3_4:67332165-67332184 | None:intergenic | 35.0% | |
| TGGATAAAAGAGAGAAAGTG+AGG | + | chr3_4:67332171-67332190 | None:intergenic | 35.0% | |
| TAATCCATTGTTTGTGGTGT+AGG | - | chr3_4:67332324-67332343 | Msa0515950:intron | 35.0% | |
| ATATCCTACACCACAAACAA+TGG | + | chr3_4:67332331-67332350 | None:intergenic | 35.0% | |
| TTGTTTGTGGTGTAGGATAT+AGG | - | chr3_4:67332331-67332350 | Msa0515950:intron | 35.0% | |
| AGTAATAACATAACGATGCC+CGG | - | chr3_4:67332592-67332611 | Msa0515950:CDS | 35.0% | |
| GAGAAATGATTGAAGAGATG+TGG | + | chr3_4:67332643-67332662 | None:intergenic | 35.0% | |
| ! | TTAGCACTTTGACTTTCACT+TGG | + | chr3_4:67332899-67332918 | None:intergenic | 35.0% |
| TTGCTAGCAAACAATGATGA+TGG | - | chr3_4:67331469-67331488 | Msa0515950:three_prime_UTR | 35.0% | |
| !! | TTTTAGCACTTTTTGGGAAG+GGG | + | chr3_4:67331537-67331556 | None:intergenic | 35.0% |
| !! | GATTTTAGCACTTTTTGGGA+AGG | + | chr3_4:67331539-67331558 | None:intergenic | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | + | chr3_4:67331561-67331580 | None:intergenic | 35.0% |
| AACTCATCTGACGATAATGA+TGG | + | chr3_4:67331695-67331714 | None:intergenic | 35.0% | |
| CATTGCCTACATATCAATCA+TGG | - | chr3_4:67331807-67331826 | Msa0515950:CDS | 35.0% | |
| TCAATCATGGTTAAATAGGC+TGG | - | chr3_4:67331820-67331839 | Msa0515950:CDS | 35.0% | |
| ATCTCCATGTCTATTCTCTT+CGG | + | chr3_4:67331912-67331931 | None:intergenic | 35.0% | |
| AAGACCAGAGTTATGGTAAA+AGG | + | chr3_4:67332112-67332131 | None:intergenic | 35.0% | |
| AAAGAGAGAAAGTGAGGAAA+AGG | + | chr3_4:67332165-67332184 | None:intergenic | 35.0% | |
| TGGATAAAAGAGAGAAAGTG+AGG | + | chr3_4:67332171-67332190 | None:intergenic | 35.0% | |
| TAATCCATTGTTTGTGGTGT+AGG | - | chr3_4:67332324-67332343 | Msa0515950:intron | 35.0% | |
| ATATCCTACACCACAAACAA+TGG | + | chr3_4:67332331-67332350 | None:intergenic | 35.0% | |
| TTGTTTGTGGTGTAGGATAT+AGG | - | chr3_4:67332331-67332350 | Msa0515950:intron | 35.0% | |
| AGTAATAACATAACGATGCC+CGG | - | chr3_4:67332592-67332611 | Msa0515950:CDS | 35.0% | |
| GAGAAATGATTGAAGAGATG+TGG | + | chr3_4:67332643-67332662 | None:intergenic | 35.0% | |
| ! | TTAGCACTTTGACTTTCACT+TGG | + | chr3_4:67332899-67332918 | None:intergenic | 35.0% |
| !! | GCATTTTGGTGGTCCTAATT+GGG | + | chr3_4:67331504-67331523 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | + | chr3_4:67331562-67331581 | None:intergenic | 40.0% |
| !! | TCTGACGATAATGATGGATC+TGG | + | chr3_4:67331689-67331708 | None:intergenic | 40.0% |
| ATAATCATCTGGAAGCTCAG+CGG | + | chr3_4:67331750-67331769 | None:intergenic | 40.0% | |
| TCATGGTTAAATAGGCTGGA+TGG | - | chr3_4:67331824-67331843 | Msa0515950:CDS | 40.0% | |
| CATGGTTAAATAGGCTGGAT+GGG | - | chr3_4:67331825-67331844 | Msa0515950:CDS | 40.0% | |
| ATGGTTAAATAGGCTGGATG+GGG | - | chr3_4:67331826-67331845 | Msa0515950:CDS | 40.0% | |
| CTTATCTCTATCTATCGGGT+CGG | - | chr3_4:67331942-67331961 | Msa0515950:CDS | 40.0% | |
| TTATCTCTATCTATCGGGTC+GGG | - | chr3_4:67331943-67331962 | Msa0515950:CDS | 40.0% | |
| ATCCAATACTTGATTGGAGC+TGG | - | chr3_4:67331992-67332011 | Msa0515950:CDS | 40.0% | |
| ! | GTGGTGTTTTGTCTGCATTA+TGG | + | chr3_4:67332088-67332107 | None:intergenic | 40.0% |
| CAGAGTTATGGTAAAAGGTG+TGG | + | chr3_4:67332107-67332126 | None:intergenic | 40.0% | |
| ! | CACACCTTTTACCATAACTC+TGG | - | chr3_4:67332105-67332124 | Msa0515950:intron | 40.0% |
| AGTTCGAAAGACCAGAGTTA+TGG | + | chr3_4:67332119-67332138 | None:intergenic | 40.0% | |
| AATTCTATGTGAGTGGAGAG+TGG | + | chr3_4:67332191-67332210 | None:intergenic | 40.0% | |
| ! | CATACACAAAGGTCTTGTAC+GGG | + | chr3_4:67332369-67332388 | None:intergenic | 40.0% |
| ! | GCATACACAAAGGTCTTGTA+CGG | + | chr3_4:67332370-67332389 | None:intergenic | 40.0% |
| TTGAAAGGCTGCATACACAA+AGG | + | chr3_4:67332380-67332399 | None:intergenic | 40.0% | |
| TCCTCTCATATGCAATCTCA+TGG | + | chr3_4:67332510-67332529 | None:intergenic | 40.0% | |
| GATTGCATATGAGAGGATTG+TGG | - | chr3_4:67332513-67332532 | Msa0515950:CDS | 40.0% | |
| CTTCAATCATTTCTCTGCAG+TGG | - | chr3_4:67332648-67332667 | Msa0515950:CDS | 40.0% | |
| TGGAATTCTTGATTGGACGA+TGG | - | chr3_4:67332716-67332735 | Msa0515950:CDS | 40.0% | |
| GGAATTCTTGATTGGACGAT+GGG | - | chr3_4:67332717-67332736 | Msa0515950:CDS | 40.0% | |
| GAATTCTTGATTGGACGATG+GGG | - | chr3_4:67332718-67332737 | Msa0515950:CDS | 40.0% | |
| CTAGAAGGTTTAACAAGCGA+GGG | - | chr3_4:67332751-67332770 | Msa0515950:CDS | 40.0% | |
| TCTTGTAGCCTCCTAATCTT+GGG | + | chr3_4:67332811-67332830 | None:intergenic | 40.0% | |
| AGATGAAGCCCAAGTTTAGT+TGG | - | chr3_4:67332854-67332873 | Msa0515950:CDS | 40.0% | |
| GATGAAGCCCAAGTTTAGTT+GGG | - | chr3_4:67332855-67332874 | Msa0515950:CDS | 40.0% | |
| !! | GCATTTTGGTGGTCCTAATT+GGG | + | chr3_4:67331504-67331523 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | + | chr3_4:67331562-67331581 | None:intergenic | 40.0% |
| !! | TCTGACGATAATGATGGATC+TGG | + | chr3_4:67331689-67331708 | None:intergenic | 40.0% |
| ATAATCATCTGGAAGCTCAG+CGG | + | chr3_4:67331750-67331769 | None:intergenic | 40.0% | |
| TCATGGTTAAATAGGCTGGA+TGG | - | chr3_4:67331824-67331843 | Msa0515950:CDS | 40.0% | |
| CATGGTTAAATAGGCTGGAT+GGG | - | chr3_4:67331825-67331844 | Msa0515950:CDS | 40.0% | |
| ATGGTTAAATAGGCTGGATG+GGG | - | chr3_4:67331826-67331845 | Msa0515950:CDS | 40.0% | |
| CTTATCTCTATCTATCGGGT+CGG | - | chr3_4:67331942-67331961 | Msa0515950:CDS | 40.0% | |
| TTATCTCTATCTATCGGGTC+GGG | - | chr3_4:67331943-67331962 | Msa0515950:CDS | 40.0% | |
| ATCCAATACTTGATTGGAGC+TGG | - | chr3_4:67331992-67332011 | Msa0515950:CDS | 40.0% | |
| ! | GTGGTGTTTTGTCTGCATTA+TGG | + | chr3_4:67332088-67332107 | None:intergenic | 40.0% |
| CAGAGTTATGGTAAAAGGTG+TGG | + | chr3_4:67332107-67332126 | None:intergenic | 40.0% | |
| ! | CACACCTTTTACCATAACTC+TGG | - | chr3_4:67332105-67332124 | Msa0515950:intron | 40.0% |
| AGTTCGAAAGACCAGAGTTA+TGG | + | chr3_4:67332119-67332138 | None:intergenic | 40.0% | |
| AATTCTATGTGAGTGGAGAG+TGG | + | chr3_4:67332191-67332210 | None:intergenic | 40.0% | |
| ! | CATACACAAAGGTCTTGTAC+GGG | + | chr3_4:67332369-67332388 | None:intergenic | 40.0% |
| ! | GCATACACAAAGGTCTTGTA+CGG | + | chr3_4:67332370-67332389 | None:intergenic | 40.0% |
| TTGAAAGGCTGCATACACAA+AGG | + | chr3_4:67332380-67332399 | None:intergenic | 40.0% | |
| TCCTCTCATATGCAATCTCA+TGG | + | chr3_4:67332510-67332529 | None:intergenic | 40.0% | |
| GATTGCATATGAGAGGATTG+TGG | - | chr3_4:67332513-67332532 | Msa0515950:CDS | 40.0% | |
| CTTCAATCATTTCTCTGCAG+TGG | - | chr3_4:67332648-67332667 | Msa0515950:CDS | 40.0% | |
| TGGAATTCTTGATTGGACGA+TGG | - | chr3_4:67332716-67332735 | Msa0515950:CDS | 40.0% | |
| GGAATTCTTGATTGGACGAT+GGG | - | chr3_4:67332717-67332736 | Msa0515950:CDS | 40.0% | |
| GAATTCTTGATTGGACGATG+GGG | - | chr3_4:67332718-67332737 | Msa0515950:CDS | 40.0% | |
| CTAGAAGGTTTAACAAGCGA+GGG | - | chr3_4:67332751-67332770 | Msa0515950:CDS | 40.0% | |
| TCTTGTAGCCTCCTAATCTT+GGG | + | chr3_4:67332811-67332830 | None:intergenic | 40.0% | |
| AGATGAAGCCCAAGTTTAGT+TGG | - | chr3_4:67332854-67332873 | Msa0515950:CDS | 40.0% | |
| GATGAAGCCCAAGTTTAGTT+GGG | - | chr3_4:67332855-67332874 | Msa0515950:CDS | 40.0% | |
| ATGGCAATGTGCACCCAATT+AGG | - | chr3_4:67331488-67331507 | Msa0515950:three_prime_UTR | 45.0% | |
| !! | GGCATTTTGGTGGTCCTAAT+TGG | + | chr3_4:67331505-67331524 | None:intergenic | 45.0% |
| ACCACCAAAATGCCACCTAA+AGG | - | chr3_4:67331511-67331530 | Msa0515950:three_prime_UTR | 45.0% | |
| GGATCTGGCAACAAATCATG+TGG | + | chr3_4:67331674-67331693 | None:intergenic | 45.0% | |
| TGAGTTCGTCGATCAAGTCA+AGG | - | chr3_4:67331709-67331728 | Msa0515950:CDS | 45.0% | |
| ACTGCCGAAGAGAATAGACA+TGG | - | chr3_4:67331905-67331924 | Msa0515950:CDS | 45.0% | |
| TGCCAGCTCCAATCAAGTAT+TGG | + | chr3_4:67331997-67332016 | None:intergenic | 45.0% | |
| ATACTTGATTGGAGCTGGCA+TGG | - | chr3_4:67331997-67332016 | Msa0515950:CDS | 45.0% | |
| AAAAGTGGCTCGCTCTTGAA+AGG | + | chr3_4:67332395-67332414 | None:intergenic | 45.0% | |
| TAGCATGAGCATGCTAGCTA+AGG | - | chr3_4:67332426-67332445 | Msa0515950:CDS | 45.0% | |
| AATCTCATGGCGCTTCTCAT+CGG | + | chr3_4:67332497-67332516 | None:intergenic | 45.0% | |
| GCCATGAGATTGCATATGAG+AGG | - | chr3_4:67332506-67332525 | Msa0515950:CDS | 45.0% | |
| ! | TGTGGAGAAGCTTCTAGAAG+TGG | - | chr3_4:67332531-67332550 | Msa0515950:CDS | 45.0% |
| ATGGATGTCATCGTCTCAGT+GGG | + | chr3_4:67332559-67332578 | None:intergenic | 45.0% | |
| TATGGATGTCATCGTCTCAG+TGG | + | chr3_4:67332560-67332579 | None:intergenic | 45.0% | |
| ACCATCATGCATCAAGTGTC+CGG | + | chr3_4:67332614-67332633 | None:intergenic | 45.0% | |
| ACACTTGATGCATGATGGTC+AGG | - | chr3_4:67332615-67332634 | Msa0515950:CDS | 45.0% | |
| GCTAGAAGGTTTAACAAGCG+AGG | - | chr3_4:67332750-67332769 | Msa0515950:CDS | 45.0% | |
| GTGCACAGGAGATAGTATGT+GGG | - | chr3_4:67332779-67332798 | Msa0515950:CDS | 45.0% | |
| CTCTTGTAGCCTCCTAATCT+TGG | + | chr3_4:67332812-67332831 | None:intergenic | 45.0% | |
| ATGGCAATGTGCACCCAATT+AGG | - | chr3_4:67331488-67331507 | Msa0515950:three_prime_UTR | 45.0% | |
| !! | GGCATTTTGGTGGTCCTAAT+TGG | + | chr3_4:67331505-67331524 | None:intergenic | 45.0% |
| ACCACCAAAATGCCACCTAA+AGG | - | chr3_4:67331511-67331530 | Msa0515950:three_prime_UTR | 45.0% | |
| GGATCTGGCAACAAATCATG+TGG | + | chr3_4:67331674-67331693 | None:intergenic | 45.0% | |
| TGAGTTCGTCGATCAAGTCA+AGG | - | chr3_4:67331709-67331728 | Msa0515950:CDS | 45.0% | |
| ACTGCCGAAGAGAATAGACA+TGG | - | chr3_4:67331905-67331924 | Msa0515950:CDS | 45.0% | |
| TGCCAGCTCCAATCAAGTAT+TGG | + | chr3_4:67331997-67332016 | None:intergenic | 45.0% | |
| ATACTTGATTGGAGCTGGCA+TGG | - | chr3_4:67331997-67332016 | Msa0515950:CDS | 45.0% | |
| AAAAGTGGCTCGCTCTTGAA+AGG | + | chr3_4:67332395-67332414 | None:intergenic | 45.0% | |
| TAGCATGAGCATGCTAGCTA+AGG | - | chr3_4:67332426-67332445 | Msa0515950:CDS | 45.0% | |
| AATCTCATGGCGCTTCTCAT+CGG | + | chr3_4:67332497-67332516 | None:intergenic | 45.0% | |
| GCCATGAGATTGCATATGAG+AGG | - | chr3_4:67332506-67332525 | Msa0515950:CDS | 45.0% | |
| ! | TGTGGAGAAGCTTCTAGAAG+TGG | - | chr3_4:67332531-67332550 | Msa0515950:CDS | 45.0% |
| ATGGATGTCATCGTCTCAGT+GGG | + | chr3_4:67332559-67332578 | None:intergenic | 45.0% | |
| TATGGATGTCATCGTCTCAG+TGG | + | chr3_4:67332560-67332579 | None:intergenic | 45.0% | |
| ACCATCATGCATCAAGTGTC+CGG | + | chr3_4:67332614-67332633 | None:intergenic | 45.0% | |
| ACACTTGATGCATGATGGTC+AGG | - | chr3_4:67332615-67332634 | Msa0515950:CDS | 45.0% | |
| GCTAGAAGGTTTAACAAGCG+AGG | - | chr3_4:67332750-67332769 | Msa0515950:CDS | 45.0% | |
| GTGCACAGGAGATAGTATGT+GGG | - | chr3_4:67332779-67332798 | Msa0515950:CDS | 45.0% | |
| CTCTTGTAGCCTCCTAATCT+TGG | + | chr3_4:67332812-67332831 | None:intergenic | 45.0% | |
| !! | AAAAAATTTCAAAAAAAAAA+TGG | - | chr3_4:67332917-67332936 | Msa0515950:CDS | 5.0% |
| !! | AAAAAATTTCAAAAAAAAAA+TGG | - | chr3_4:67332917-67332936 | Msa0515950:CDS | 5.0% |
| ! | GCCTTTAGGTGGCATTTTGG+TGG | + | chr3_4:67331515-67331534 | None:intergenic | 50.0% |
| !! | CTTTTTGGGAAGGGGCCTTT+AGG | + | chr3_4:67331529-67331548 | None:intergenic | 50.0% |
| AGTGGGTGACATGATCACTG+AGG | - | chr3_4:67331781-67331800 | Msa0515950:CDS | 50.0% | |
| TGGTTCAAGCACCAATCCGT+GGG | - | chr3_4:67331862-67331881 | Msa0515950:CDS | 50.0% | |
| !!! | CGAGCCACTTTTCTGTCAGA+CGG | - | chr3_4:67332403-67332422 | Msa0515950:intron | 50.0% |
| GCTACCGTCTGACAGAAAAG+TGG | + | chr3_4:67332410-67332429 | None:intergenic | 50.0% | |
| AGCATGCTAGCTAAGGAGAG+AGG | - | chr3_4:67332433-67332452 | Msa0515950:CDS | 50.0% | |
| TGGATGTCATCGTCTCAGTG+GGG | + | chr3_4:67332558-67332577 | None:intergenic | 50.0% | |
| CCATCATGCATCAAGTGTCC+GGG | + | chr3_4:67332613-67332632 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | - | chr3_4:67332661-67332680 | Msa0515950:CDS | 50.0% | |
| CTTGATTGGACGATGGGGTT+TGG | - | chr3_4:67332723-67332742 | Msa0515950:CDS | 50.0% | |
| TGGGGTTTGGAGAAGCTAGA+AGG | - | chr3_4:67332736-67332755 | Msa0515950:CDS | 50.0% | |
| CGTGCACAGGAGATAGTATG+TGG | - | chr3_4:67332778-67332797 | Msa0515950:CDS | 50.0% | |
| GTGGGATTGCACCCAAGATT+AGG | - | chr3_4:67332797-67332816 | Msa0515950:CDS | 50.0% | |
| GGATTGCACCCAAGATTAGG+AGG | - | chr3_4:67332800-67332819 | Msa0515950:CDS | 50.0% | |
| ! | GCCTTTAGGTGGCATTTTGG+TGG | + | chr3_4:67331515-67331534 | None:intergenic | 50.0% |
| !! | CTTTTTGGGAAGGGGCCTTT+AGG | + | chr3_4:67331529-67331548 | None:intergenic | 50.0% |
| AGTGGGTGACATGATCACTG+AGG | - | chr3_4:67331781-67331800 | Msa0515950:CDS | 50.0% | |
| TGGTTCAAGCACCAATCCGT+GGG | - | chr3_4:67331862-67331881 | Msa0515950:CDS | 50.0% | |
| !!! | CGAGCCACTTTTCTGTCAGA+CGG | - | chr3_4:67332403-67332422 | Msa0515950:intron | 50.0% |
| GCTACCGTCTGACAGAAAAG+TGG | + | chr3_4:67332410-67332429 | None:intergenic | 50.0% | |
| AGCATGCTAGCTAAGGAGAG+AGG | - | chr3_4:67332433-67332452 | Msa0515950:CDS | 50.0% | |
| TGGATGTCATCGTCTCAGTG+GGG | + | chr3_4:67332558-67332577 | None:intergenic | 50.0% | |
| CCATCATGCATCAAGTGTCC+GGG | + | chr3_4:67332613-67332632 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | - | chr3_4:67332661-67332680 | Msa0515950:CDS | 50.0% | |
| CTTGATTGGACGATGGGGTT+TGG | - | chr3_4:67332723-67332742 | Msa0515950:CDS | 50.0% | |
| TGGGGTTTGGAGAAGCTAGA+AGG | - | chr3_4:67332736-67332755 | Msa0515950:CDS | 50.0% | |
| CGTGCACAGGAGATAGTATG+TGG | - | chr3_4:67332778-67332797 | Msa0515950:CDS | 50.0% | |
| GTGGGATTGCACCCAAGATT+AGG | - | chr3_4:67332797-67332816 | Msa0515950:CDS | 50.0% | |
| GGATTGCACCCAAGATTAGG+AGG | - | chr3_4:67332800-67332819 | Msa0515950:CDS | 50.0% | |
| ! | GGGGCCTTTAGGTGGCATTT+TGG | + | chr3_4:67331518-67331537 | None:intergenic | 55.0% |
| TTTGGGAAGGGGCCTTTAGG+TGG | + | chr3_4:67331526-67331545 | None:intergenic | 55.0% | |
| TCTTCCACGGGTTTGGCTAG+TGG | + | chr3_4:67331641-67331660 | None:intergenic | 55.0% | |
| CCAGCATTCTTCCACGGGTT+TGG | + | chr3_4:67331648-67331667 | None:intergenic | 55.0% | |
| CCAAACCCGTGGAAGAATGC+TGG | - | chr3_4:67331645-67331664 | Msa0515950:CDS | 55.0% | |
| TGGCTGCCAGCATTCTTCCA+CGG | + | chr3_4:67331654-67331673 | None:intergenic | 55.0% | |
| GATGGGGTTGCAGATGAGAC+TGG | - | chr3_4:67331842-67331861 | Msa0515950:CDS | 55.0% | |
| CTGGTTCAAGCACCAATCCG+TGG | - | chr3_4:67331861-67331880 | Msa0515950:CDS | 55.0% | |
| TGTCCATACAGCCCACGGAT+TGG | + | chr3_4:67331876-67331895 | None:intergenic | 55.0% | |
| CCCGGACACTTGATGCATGA+TGG | - | chr3_4:67332610-67332629 | Msa0515950:CDS | 55.0% | |
| AAGCGAGGGAAAACGTGCAC+AGG | - | chr3_4:67332765-67332784 | Msa0515950:CDS | 55.0% | |
| ! | GGGGCCTTTAGGTGGCATTT+TGG | + | chr3_4:67331518-67331537 | None:intergenic | 55.0% |
| TTTGGGAAGGGGCCTTTAGG+TGG | + | chr3_4:67331526-67331545 | None:intergenic | 55.0% | |
| TCTTCCACGGGTTTGGCTAG+TGG | + | chr3_4:67331641-67331660 | None:intergenic | 55.0% | |
| CCAGCATTCTTCCACGGGTT+TGG | + | chr3_4:67331648-67331667 | None:intergenic | 55.0% | |
| CCAAACCCGTGGAAGAATGC+TGG | - | chr3_4:67331645-67331664 | Msa0515950:CDS | 55.0% | |
| TGGCTGCCAGCATTCTTCCA+CGG | + | chr3_4:67331654-67331673 | None:intergenic | 55.0% | |
| GATGGGGTTGCAGATGAGAC+TGG | - | chr3_4:67331842-67331861 | Msa0515950:CDS | 55.0% | |
| CTGGTTCAAGCACCAATCCG+TGG | - | chr3_4:67331861-67331880 | Msa0515950:CDS | 55.0% | |
| TGTCCATACAGCCCACGGAT+TGG | + | chr3_4:67331876-67331895 | None:intergenic | 55.0% | |
| CCCGGACACTTGATGCATGA+TGG | - | chr3_4:67332610-67332629 | Msa0515950:CDS | 55.0% | |
| AAGCGAGGGAAAACGTGCAC+AGG | - | chr3_4:67332765-67332784 | Msa0515950:CDS | 55.0% | |
| GGCTGCCAGCATTCTTCCAC+GGG | + | chr3_4:67331653-67331672 | None:intergenic | 60.0% | |
| ! | GCACCAATCCGTGGGCTGTA+TGG | - | chr3_4:67331870-67331889 | Msa0515950:CDS | 60.0% |
| GAGCGTGTCCATACAGCCCA+CGG | + | chr3_4:67331881-67331900 | None:intergenic | 60.0% | |
| GGGCTGTATGGACACGCTCT+TGG | - | chr3_4:67331882-67331901 | Msa0515950:CDS | 60.0% | |
| !! | GGGTCGGGTTGACATGCTCA+TGG | - | chr3_4:67331958-67331977 | Msa0515950:CDS | 60.0% |
| CCACATATGCGCGCAAGCAC+GGG | + | chr3_4:67332463-67332482 | None:intergenic | 60.0% | |
| GCCACATATGCGCGCAAGCA+CGG | + | chr3_4:67332464-67332483 | None:intergenic | 60.0% | |
| GGCTGCCAGCATTCTTCCAC+GGG | + | chr3_4:67331653-67331672 | None:intergenic | 60.0% | |
| ! | GCACCAATCCGTGGGCTGTA+TGG | - | chr3_4:67331870-67331889 | Msa0515950:CDS | 60.0% |
| GAGCGTGTCCATACAGCCCA+CGG | + | chr3_4:67331881-67331900 | None:intergenic | 60.0% | |
| GGGCTGTATGGACACGCTCT+TGG | - | chr3_4:67331882-67331901 | Msa0515950:CDS | 60.0% | |
| !! | GGGTCGGGTTGACATGCTCA+TGG | - | chr3_4:67331958-67331977 | Msa0515950:CDS | 60.0% |
| CCACATATGCGCGCAAGCAC+GGG | + | chr3_4:67332463-67332482 | None:intergenic | 60.0% | |
| GCCACATATGCGCGCAAGCA+CGG | + | chr3_4:67332464-67332483 | None:intergenic | 60.0% | |
| GCTGCCACTAGCCAAACCCG+TGG | - | chr3_4:67331634-67331653 | Msa0515950:CDS | 65.0% | |
| CCCGTGCTTGCGCGCATATG+TGG | - | chr3_4:67332460-67332479 | Msa0515950:CDS | 65.0% | |
| GCTGCCACTAGCCAAACCCG+TGG | - | chr3_4:67331634-67331653 | Msa0515950:CDS | 65.0% | |
| CCCGTGCTTGCGCGCATATG+TGG | - | chr3_4:67332460-67332479 | Msa0515950:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 67331454 | 67332983 | 67331454 | ID=Msa0515950;Name=Msa0515950 |
| chr3_4 | mRNA | 67331454 | 67332983 | 67331454 | ID=Msa0515950-mRNA-1;Parent=Msa0515950;Name=Msa0515950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=28|1|1|1|1|1|2|80|364 |
| chr3_4 | exon | 67331454 | 67332091 | 67331454 | ID=Msa0515950-mRNA-1:exon:17530;Parent=Msa0515950-mRNA-1 |
| chr3_4 | exon | 67332419 | 67332983 | 67332419 | ID=Msa0515950-mRNA-1:exon:17529;Parent=Msa0515950-mRNA-1 |
| chr3_4 | five_prime_UTR | 67332956 | 67332983 | 67332956 | ID=Msa0515950-mRNA-1:five_prime_utr;Parent=Msa0515950-mRNA-1 |
| chr3_4 | CDS | 67332419 | 67332955 | 67332419 | ID=Msa0515950-mRNA-1:cds;Parent=Msa0515950-mRNA-1 |
| chr3_4 | CDS | 67331534 | 67332091 | 67331534 | ID=Msa0515950-mRNA-1:cds;Parent=Msa0515950-mRNA-1 |
| chr3_4 | three_prime_UTR | 67331454 | 67331533 | 67331454 | ID=Msa0515950-mRNA-1:three_prime_utr;Parent=Msa0515950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
