Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa1037890 | 0.817164 | 3.800149e-52 | -8.615850e-47 |
| Msa0019600 | Msa1037890 | 0.911567 | 5.253975e-83 | -8.615850e-47 |
| Msa0050040 | Msa1037890 | 0.820572 | 6.391156e-53 | -8.615850e-47 |
| Msa0066320 | Msa1037890 | 0.865989 | 3.955915e-65 | -8.615850e-47 |
| Msa0102990 | Msa1037890 | 0.820269 | 7.501077e-53 | -8.615850e-47 |
| Msa0111750 | Msa1037890 | 0.858744 | 6.677942e-63 | -8.615850e-47 |
| Msa0641250 | Msa1037890 | 0.829408 | 5.235872e-55 | -8.615850e-47 |
| Msa0669840 | Msa1037890 | 0.918424 | 1.584581e-86 | -8.615850e-47 |
| Msa0680150 | Msa1037890 | 0.825704 | 4.053957e-54 | -8.615850e-47 |
| Msa0688500 | Msa1037890 | 0.815379 | 9.527859e-52 | -8.615850e-47 |
| Msa0707220 | Msa1037890 | 0.818346 | 2.056528e-52 | -8.615850e-47 |
| Msa0737190 | Msa1037890 | 0.819637 | 1.046094e-52 | -8.615850e-47 |
| Msa0739580 | Msa1037890 | 0.834667 | 2.625736e-56 | -8.615850e-47 |
| Msa0748400 | Msa1037890 | 0.803067 | 4.160357e-49 | -8.615850e-47 |
| Msa0752840 | Msa1037890 | 0.808281 | 3.345052e-50 | -8.615850e-47 |
| Msa0764820 | Msa1037890 | 0.857828 | 1.251051e-62 | -8.615850e-47 |
| Msa0770290 | Msa1037890 | 0.856868 | 2.404356e-62 | -8.615850e-47 |
| Msa0778910 | Msa1037890 | 0.808423 | 3.120591e-50 | -8.615850e-47 |
| Msa0778930 | Msa1037890 | 0.829969 | 3.823077e-55 | -8.615850e-47 |
| Msa0782360 | Msa1037890 | 0.815552 | 8.721022e-52 | -8.615850e-47 |
| Msa0816450 | Msa1037890 | 0.801183 | 1.015628e-48 | -8.615850e-47 |
| Msa0831940 | Msa1037890 | 0.812360 | 4.408934e-51 | -8.615850e-47 |
| Msa0840500 | Msa1037890 | 0.821759 | 3.403463e-53 | -8.615850e-47 |
| Msa0124130 | Msa1037890 | 0.816576 | 5.151358e-52 | -8.615850e-47 |
| Msa0130010 | Msa1037890 | 0.809132 | 2.201247e-50 | -8.615850e-47 |
| Msa0141120 | Msa1037890 | 0.815131 | 1.081553e-51 | -8.615850e-47 |
| Msa0147600 | Msa1037890 | 0.810761 | 9.817549e-51 | -8.615850e-47 |
| Msa0149140 | Msa1037890 | 0.821205 | 4.570572e-53 | -8.615850e-47 |
| Msa0156250 | Msa1037890 | 0.811612 | 6.416489e-51 | -8.615850e-47 |
| Msa0185490 | Msa1037890 | 0.813499 | 2.481579e-51 | -8.615850e-47 |
| Msa0194380 | Msa1037890 | 0.800587 | 1.343856e-48 | -8.615850e-47 |
| Msa0203030 | Msa1037890 | 0.803400 | 3.550233e-49 | -8.615850e-47 |
| Msa0212080 | Msa1037890 | 0.834818 | 2.405410e-56 | -8.615850e-47 |
| Msa0212150 | Msa1037890 | 0.825106 | 5.615316e-54 | -8.615850e-47 |
| Msa0217230 | Msa1037890 | 0.840081 | 1.077673e-57 | -8.615850e-47 |
| Msa0219190 | Msa1037890 | 0.862361 | 5.350367e-64 | -8.615850e-47 |
| Msa0232920 | Msa1037890 | 0.804911 | 1.720879e-49 | -8.615850e-47 |
| Msa0375680 | Msa1037890 | 0.838972 | 2.092561e-57 | -8.615850e-47 |
| Msa0392420 | Msa1037890 | 0.851085 | 1.116538e-60 | -8.615850e-47 |
| Msa0392460 | Msa1037890 | 0.852030 | 6.029584e-61 | -8.615850e-47 |
| Msa0392490 | Msa1037890 | 0.849085 | 4.055060e-60 | -8.615850e-47 |
| Msa0406000 | Msa1037890 | 0.886652 | 2.838403e-72 | -8.615850e-47 |
| Msa0413930 | Msa1037890 | 0.802403 | 5.704021e-49 | -8.615850e-47 |
| Msa0423100 | Msa1037890 | 0.802430 | 5.630561e-49 | -8.615850e-47 |
| Msa0424330 | Msa1037890 | 0.888719 | 4.600546e-73 | -8.615850e-47 |
| Msa0424340 | Msa1037890 | 0.873690 | 1.209500e-67 | -8.615850e-47 |
| Msa0424350 | Msa1037890 | 0.858126 | 1.020020e-62 | -8.615850e-47 |
| Msa0441590 | Msa1037890 | 0.816502 | 5.351220e-52 | -8.615850e-47 |
| Msa0451400 | Msa1037890 | 0.901933 | 1.622029e-78 | -8.615850e-47 |
| Msa0471240 | Msa1037890 | 0.801042 | 1.084965e-48 | -8.615850e-47 |
| Msa0996270 | Msa1037890 | 0.806612 | 7.559674e-50 | -8.615850e-47 |
| Msa0999300 | Msa1037890 | 0.873504 | 1.397143e-67 | -8.615850e-47 |
| Msa0999360 | Msa1037890 | 0.819136 | 1.360516e-52 | -8.615850e-47 |
| Msa0999410 | Msa1037890 | 0.821000 | 5.093967e-53 | -8.615850e-47 |
| Msa1001890 | Msa1037890 | 0.831034 | 2.098326e-55 | -8.615850e-47 |
| Msa1037770 | Msa1037890 | 0.843951 | 1.021243e-58 | -8.615850e-47 |
| Msa1037890 | Msa1037900 | 0.901638 | 2.188273e-78 | -8.615850e-47 |
| Msa1037890 | Msa1037910 | 0.880796 | 4.085324e-70 | -8.615850e-47 |
| Msa1037890 | Msa1041530 | 0.814311 | 1.643432e-51 | -8.615850e-47 |
| Msa1037890 | Msa1081570 | 0.831746 | 1.401271e-55 | -8.615850e-47 |
| Msa1037890 | Msa1084520 | 0.841015 | 6.140559e-58 | -8.615850e-47 |
| Msa1037890 | Msa1123880 | 0.811777 | 5.907495e-51 | -8.615850e-47 |
| Msa1037890 | Msa1125810 | 0.817850 | 2.662738e-52 | -8.615850e-47 |
| Msa1037890 | Msa1127140 | 0.828904 | 6.935470e-55 | -8.615850e-47 |
| Msa1037890 | Msa1129950 | 0.920377 | 1.381854e-87 | -8.615850e-47 |
| Msa1037890 | Msa1129960 | 0.880455 | 5.413132e-70 | -8.615850e-47 |
| Msa1037890 | Msa1129970 | 0.873579 | 1.318033e-67 | -8.615850e-47 |
| Msa1037890 | Msa1130010 | 0.879890 | 8.607515e-70 | -8.615850e-47 |
| Msa1037890 | Msa1145020 | 0.849796 | 2.569116e-60 | -8.615850e-47 |
| Msa1037890 | Msa1166400 | 0.822338 | 2.498920e-53 | -8.615850e-47 |
| Msa1037890 | Msa1169710 | 0.807799 | 4.236019e-50 | -8.615850e-47 |
| Msa1037890 | Msa1169990 | 0.806719 | 7.175638e-50 | -8.615850e-47 |
| Msa1037890 | Msa1171310 | 0.818807 | 1.616149e-52 | -8.615850e-47 |
| Msa1037890 | Msa1176160 | 0.807762 | 4.313342e-50 | -8.615850e-47 |
| Msa1037890 | Msa1200460 | 0.802328 | 5.910000e-49 | -8.615850e-47 |
| Msa1037890 | Msa1201110 | 0.822411 | 2.403851e-53 | -8.615850e-47 |
| Msa1037890 | Msa1201160 | 0.855112 | 7.850628e-62 | -8.615850e-47 |
| Msa1037890 | Msa1228190 | 0.839496 | 1.530826e-57 | -8.615850e-47 |
| Msa1037890 | Msa1271260 | 0.805886 | 1.074717e-49 | -8.615850e-47 |
| Msa1037890 | Msa1277400 | 0.801571 | 8.457158e-49 | -8.615850e-47 |
| Msa1037890 | Msa1282840 | 0.813775 | 2.157389e-51 | -8.615850e-47 |
| Msa1037890 | Msa1285900 | 0.805053 | 1.607012e-49 | -8.615850e-47 |
| Msa1037890 | Msa1294290 | 0.838107 | 3.500304e-57 | -8.615850e-47 |
| Msa1037890 | Msa1305510 | 0.852827 | 3.574126e-61 | -8.615850e-47 |
| Msa1037890 | Msa1307150 | 0.824993 | 5.972139e-54 | -8.615850e-47 |
| Msa1037890 | Msa1307190 | 0.801316 | 9.538663e-49 | -8.615850e-47 |
| Msa1037890 | Msa1336780 | 0.819669 | 1.028882e-52 | -8.615850e-47 |
| Msa1037890 | Msa1374550 | 0.801790 | 7.625670e-49 | -8.615850e-47 |
| Msa1037890 | Msa1378870 | 0.805249 | 1.462106e-49 | -8.615850e-47 |
| Msa1037890 | Msa1379970 | 0.807898 | 4.037058e-50 | -8.615850e-47 |
| Msa1037890 | Msa1394890 | 0.842409 | 2.632317e-58 | -8.615850e-47 |
| Msa1037890 | Msa1406780 | 0.825653 | 4.168727e-54 | -8.615850e-47 |
| Msa1037890 | Msa1414930 | 0.801933 | 7.125833e-49 | -8.615850e-47 |
| Msa1037890 | Msa1420060 | 0.879812 | 9.181111e-70 | -8.615850e-47 |
| Msa1037890 | Msa1421550 | 0.875480 | 2.981873e-68 | -8.615850e-47 |
| Msa1037890 | Msa1423460 | 0.816026 | 6.837760e-52 | -8.615850e-47 |
| Msa1037890 | Msa1431850 | 0.830462 | 2.897072e-55 | -8.615850e-47 |
| Msa1037890 | Msa1435480 | 0.807455 | 5.011617e-50 | -8.615850e-47 |
| Msa1037890 | Msa1437710 | 0.834155 | 3.528929e-56 | -8.615850e-47 |
| Msa1037890 | Msa1449940 | 0.831710 | 1.430500e-55 | -8.615850e-47 |
| Msa1037890 | Msa1455320 | 0.922780 | 6.294435e-89 | -8.615850e-47 |
| Msa1037890 | Msa1459530 | 0.831240 | 1.867394e-55 | -8.615850e-47 |
| Msa1037890 | Msa1461060 | 0.834922 | 2.264362e-56 | -8.615850e-47 |
| Msa0252630 | Msa1037890 | 0.828133 | 1.064843e-54 | -8.615850e-47 |
| Msa0252770 | Msa1037890 | 0.839458 | 1.565585e-57 | -8.615850e-47 |
| Msa0289920 | Msa1037890 | 0.823515 | 1.328817e-53 | -8.615850e-47 |
| Msa0291330 | Msa1037890 | 0.821586 | 3.732329e-53 | -8.615850e-47 |
| Msa0298240 | Msa1037890 | 0.867139 | 1.705332e-65 | -8.615850e-47 |
| Msa0306120 | Msa1037890 | 0.829666 | 4.529581e-55 | -8.615850e-47 |
| Msa0322840 | Msa1037890 | 0.807810 | 4.213741e-50 | -8.615850e-47 |
| Msa0322860 | Msa1037890 | 0.801329 | 9.478538e-49 | -8.615850e-47 |
| Msa0329620 | Msa1037890 | 0.832265 | 1.043454e-55 | -8.615850e-47 |
| Msa0340480 | Msa1037890 | 0.808615 | 2.839120e-50 | -8.615850e-47 |
| Msa0344570 | Msa1037890 | 0.845838 | 3.164362e-59 | -8.615850e-47 |
| Msa0351770 | Msa1037890 | 0.855192 | 7.440424e-62 | -8.615850e-47 |
| Msa0359250 | Msa1037890 | 0.902967 | 5.636077e-79 | -8.615850e-47 |
| Msa0487570 | Msa1037890 | 0.853354 | 2.525810e-61 | -8.615850e-47 |
| Msa0487630 | Msa1037890 | 0.843614 | 1.257556e-58 | -8.615850e-47 |
| Msa0492190 | Msa1037890 | 0.869658 | 2.624562e-66 | -8.615850e-47 |
| Msa0515950 | Msa1037890 | 0.883448 | 4.447879e-71 | -8.615850e-47 |
| Msa0534930 | Msa1037890 | 0.860312 | 2.255333e-63 | -8.615850e-47 |
| Msa0535040 | Msa1037890 | 0.836568 | 8.669864e-57 | -8.615850e-47 |
| Msa0537920 | Msa1037890 | 0.819093 | 1.391666e-52 | -8.615850e-47 |
| Msa0538220 | Msa1037890 | 0.804795 | 1.819823e-49 | -8.615850e-47 |
| Msa0575740 | Msa1037890 | 0.821189 | 4.608298e-53 | -8.615850e-47 |
| Msa0591790 | Msa1037890 | 0.866944 | 1.967444e-65 | -8.615850e-47 |
| Msa0594090 | Msa1037890 | 0.850460 | 1.674267e-60 | -8.615850e-47 |
| Msa0844560 | Msa1037890 | 0.820385 | 7.053402e-53 | -8.615850e-47 |
| Msa0849280 | Msa1037890 | 0.821863 | 3.220241e-53 | -8.615850e-47 |
| Msa0851020 | Msa1037890 | 0.825998 | 3.453188e-54 | -8.615850e-47 |
| Msa0856520 | Msa1037890 | 0.825993 | 3.461329e-54 | -8.615850e-47 |
| Msa0860280 | Msa1037890 | 0.833156 | 6.267997e-56 | -8.615850e-47 |
| Msa0867350 | Msa1037890 | 0.852561 | 4.259195e-61 | -8.615850e-47 |
| Msa0873190 | Msa1037890 | 0.801139 | 1.036820e-48 | -8.615850e-47 |
| Msa0898730 | Msa1037890 | 0.858810 | 6.381532e-63 | -8.615850e-47 |
| Msa0916640 | Msa1037890 | 0.805605 | 1.231414e-49 | -8.615850e-47 |
| Msa0922750 | Msa1037890 | 0.802781 | 4.766863e-49 | -8.615850e-47 |
| Msa0929870 | Msa1037890 | 0.862785 | 3.962309e-64 | -8.615850e-47 |
| Msa0944760 | Msa1037890 | 0.811210 | 7.847290e-51 | -8.615850e-47 |
| Msa0953540 | Msa1037890 | 0.813510 | 2.467346e-51 | -8.615850e-47 |
| Msa0961560 | Msa1037890 | 0.801978 | 6.975292e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 14 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACAAGATTTCTTCGTTT+TGG | 0.224044 | 7_1:+74636065 | Msa1037890:CDS |
| CAATCCAGTGGATGCAAAAT+TGG | 0.229600 | 7_1:-74636551 | None:intergenic |
| GTTGGAGAGAAGCTTGTAAT+TGG | 0.310945 | 7_1:+74636526 | Msa1037890:three_prime_UTR |
| CATCCACTGGATTGTATTCA+AGG | 0.353753 | 7_1:+74636560 | Msa1037890:three_prime_UTR |
| GTTGTAATAATAAGCTTGGT+TGG | 0.449013 | 7_1:+74636028 | None:intergenic |
| CGGATGAGTAGCGTCAACTA+TGG | 0.473941 | 7_1:-74636138 | None:intergenic |
| TATTTGTGCCCACTACTAGT+TGG | 0.475875 | 7_1:+74636508 | Msa1037890:three_prime_UTR |
| AGCTTCTCTCCAACTAGTAG+TGG | 0.538262 | 7_1:-74636517 | None:intergenic |
| TCGTCATCGTCTTCAGTATG+TGG | 0.544092 | 7_1:+74637215 | Msa1037890:three_prime_UTR |
| AAAACGAAGAAATCTTGTGT+TGG | 0.585244 | 7_1:-74636063 | None:intergenic |
| AGTAGCGTCAACTATGGCAG+TGG | 0.617409 | 7_1:-74636132 | None:intergenic |
| GCTTCTCTCCAACTAGTAGT+GGG | 0.634311 | 7_1:-74636516 | None:intergenic |
| AGATTCTTTATAGTGGACAG+TGG | 0.675519 | 7_1:+74636089 | Msa1037890:CDS |
| AAACCTTGAATACAATCCAG+TGG | 0.710261 | 7_1:-74636563 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGTTATTTACAGGTT+TGG | + | chr7_1:74636471-74636490 | Msa1037890:intron | 20.0% |
| !! | TTCTCAATCAAAGTTATATA+TGG | - | chr7_1:74637113-74637132 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTATTTACAGGTT+TGG | + | chr7_1:74636471-74636490 | Msa1037890:intron | 20.0% |
| !! | TTCTCAATCAAAGTTATATA+TGG | - | chr7_1:74637113-74637132 | None:intergenic | 20.0% |
| !!! | GCATCATTTTTGTTATTTAC+AGG | + | chr7_1:74636466-74636485 | Msa1037890:intron | 25.0% |
| !!! | TTACCAAACTATAGTTTTGA+TGG | + | chr7_1:74636642-74636661 | Msa1037890:intron | 25.0% |
| !!! | TACCAAACTATAGTTTTGAT+GGG | + | chr7_1:74636643-74636662 | Msa1037890:intron | 25.0% |
| ! | TGTAATGTTTGGATACTAAA+GGG | + | chr7_1:74636813-74636832 | Msa1037890:intron | 25.0% |
| !!! | TGTTATTTCATCCATCTTAT+GGG | - | chr7_1:74636875-74636894 | None:intergenic | 25.0% |
| !!! | TTGTTATTTCATCCATCTTA+TGG | - | chr7_1:74636876-74636895 | None:intergenic | 25.0% |
| ! | GAAAAGTCAAGAAAAAGATT+TGG | + | chr7_1:74637142-74637161 | Msa1037890:intron | 25.0% |
| !!! | GCATCATTTTTGTTATTTAC+AGG | + | chr7_1:74636466-74636485 | Msa1037890:intron | 25.0% |
| !!! | TTACCAAACTATAGTTTTGA+TGG | + | chr7_1:74636642-74636661 | Msa1037890:intron | 25.0% |
| !!! | TACCAAACTATAGTTTTGAT+GGG | + | chr7_1:74636643-74636662 | Msa1037890:intron | 25.0% |
| ! | TGTAATGTTTGGATACTAAA+GGG | + | chr7_1:74636813-74636832 | Msa1037890:intron | 25.0% |
| !!! | TGTTATTTCATCCATCTTAT+GGG | - | chr7_1:74636875-74636894 | None:intergenic | 25.0% |
| !!! | TTGTTATTTCATCCATCTTA+TGG | - | chr7_1:74636876-74636895 | None:intergenic | 25.0% |
| ! | GAAAAGTCAAGAAAAAGATT+TGG | + | chr7_1:74637142-74637161 | Msa1037890:intron | 25.0% |
| AAAACGAAGAAATCTTGTGT+TGG | - | chr7_1:74636066-74636085 | None:intergenic | 30.0% | |
| ! | AACACAAGATTTCTTCGTTT+TGG | + | chr7_1:74636065-74636084 | Msa1037890:CDS | 30.0% |
| ! | ACACAAGATTTCTTCGTTTT+GGG | + | chr7_1:74636066-74636085 | Msa1037890:CDS | 30.0% |
| !! | TTTTGGGAGATTCTTTATAG+TGG | + | chr7_1:74636082-74636101 | Msa1037890:CDS | 30.0% |
| CCATTAGAAAAATGTTCACT+AGG | - | chr7_1:74636188-74636207 | None:intergenic | 30.0% | |
| ! | CCTAGTGAACATTTTTCTAA+TGG | + | chr7_1:74636185-74636204 | Msa1037890:intron | 30.0% |
| ! | ATGATTAGTCGATATACATG+TGG | - | chr7_1:74636379-74636398 | None:intergenic | 30.0% |
| TACCCATCAAAACTATAGTT+TGG | - | chr7_1:74636648-74636667 | None:intergenic | 30.0% | |
| ! | CTTGCCTTTTGTGAAATTAT+CGG | - | chr7_1:74636732-74636751 | None:intergenic | 30.0% |
| CAATGTGATACTGTAATGTT+TGG | + | chr7_1:74636802-74636821 | Msa1037890:intron | 30.0% | |
| CTGTAATGTTTGGATACTAA+AGG | + | chr7_1:74636812-74636831 | Msa1037890:intron | 30.0% | |
| AAAACGAAGAAATCTTGTGT+TGG | - | chr7_1:74636066-74636085 | None:intergenic | 30.0% | |
| ! | AACACAAGATTTCTTCGTTT+TGG | + | chr7_1:74636065-74636084 | Msa1037890:CDS | 30.0% |
| ! | ACACAAGATTTCTTCGTTTT+GGG | + | chr7_1:74636066-74636085 | Msa1037890:CDS | 30.0% |
| !! | TTTTGGGAGATTCTTTATAG+TGG | + | chr7_1:74636082-74636101 | Msa1037890:CDS | 30.0% |
| CCATTAGAAAAATGTTCACT+AGG | - | chr7_1:74636188-74636207 | None:intergenic | 30.0% | |
| ! | CCTAGTGAACATTTTTCTAA+TGG | + | chr7_1:74636185-74636204 | Msa1037890:intron | 30.0% |
| ! | ATGATTAGTCGATATACATG+TGG | - | chr7_1:74636379-74636398 | None:intergenic | 30.0% |
| TACCCATCAAAACTATAGTT+TGG | - | chr7_1:74636648-74636667 | None:intergenic | 30.0% | |
| ! | CTTGCCTTTTGTGAAATTAT+CGG | - | chr7_1:74636732-74636751 | None:intergenic | 30.0% |
| CAATGTGATACTGTAATGTT+TGG | + | chr7_1:74636802-74636821 | Msa1037890:intron | 30.0% | |
| CTGTAATGTTTGGATACTAA+AGG | + | chr7_1:74636812-74636831 | Msa1037890:intron | 30.0% | |
| !! | AGATTCTTTATAGTGGACAG+TGG | + | chr7_1:74636089-74636108 | Msa1037890:CDS | 35.0% |
| AAATGTTCACTAGGTATGTC+TGG | - | chr7_1:74636179-74636198 | None:intergenic | 35.0% | |
| CGATTAAATCGAGGATGTTT+GGG | - | chr7_1:74636211-74636230 | None:intergenic | 35.0% | |
| CCAAACATCCTCGATTTAAT+CGG | + | chr7_1:74636209-74636228 | Msa1037890:intron | 35.0% | |
| AAACCTTGAATACAATCCAG+TGG | - | chr7_1:74636566-74636585 | None:intergenic | 35.0% | |
| TATCGGACAGATTTATGATG+AGG | - | chr7_1:74636715-74636734 | None:intergenic | 35.0% | |
| CTGTCCGATAATTTCACAAA+AGG | + | chr7_1:74636725-74636744 | Msa1037890:intron | 35.0% | |
| TATGCTTGCAATTGTTTGTG+AGG | - | chr7_1:74636772-74636791 | None:intergenic | 35.0% | |
| TCGAAGGAAACAATATCTCA+GGG | - | chr7_1:74637172-74637191 | None:intergenic | 35.0% | |
| !! | AGATTCTTTATAGTGGACAG+TGG | + | chr7_1:74636089-74636108 | Msa1037890:CDS | 35.0% |
| AAATGTTCACTAGGTATGTC+TGG | - | chr7_1:74636179-74636198 | None:intergenic | 35.0% | |
| CGATTAAATCGAGGATGTTT+GGG | - | chr7_1:74636211-74636230 | None:intergenic | 35.0% | |
| CCAAACATCCTCGATTTAAT+CGG | + | chr7_1:74636209-74636228 | Msa1037890:intron | 35.0% | |
| AAACCTTGAATACAATCCAG+TGG | - | chr7_1:74636566-74636585 | None:intergenic | 35.0% | |
| TATCGGACAGATTTATGATG+AGG | - | chr7_1:74636715-74636734 | None:intergenic | 35.0% | |
| CTGTCCGATAATTTCACAAA+AGG | + | chr7_1:74636725-74636744 | Msa1037890:intron | 35.0% | |
| TATGCTTGCAATTGTTTGTG+AGG | - | chr7_1:74636772-74636791 | None:intergenic | 35.0% | |
| TCGAAGGAAACAATATCTCA+GGG | - | chr7_1:74637172-74637191 | None:intergenic | 35.0% | |
| TCTGGCTAATCAAGACCATA+CGG | - | chr7_1:74636161-74636180 | None:intergenic | 40.0% | |
| CCGATTAAATCGAGGATGTT+TGG | - | chr7_1:74636212-74636231 | None:intergenic | 40.0% | |
| ! | CGATCATACCGATTAAATCG+AGG | - | chr7_1:74636220-74636239 | None:intergenic | 40.0% |
| ATGTCTCATGTCACATGTGT+AGG | + | chr7_1:74636426-74636445 | Msa1037890:intron | 40.0% | |
| TGTCTCATGTCACATGTGTA+GGG | + | chr7_1:74636427-74636446 | Msa1037890:intron | 40.0% | |
| TATTTGTGCCCACTACTAGT+TGG | + | chr7_1:74636508-74636527 | Msa1037890:three_prime_UTR | 40.0% | |
| GTTGGAGAGAAGCTTGTAAT+TGG | + | chr7_1:74636526-74636545 | Msa1037890:three_prime_UTR | 40.0% | |
| CAATCCAGTGGATGCAAAAT+TGG | - | chr7_1:74636554-74636573 | None:intergenic | 40.0% | |
| CATCCACTGGATTGTATTCA+AGG | + | chr7_1:74636560-74636579 | Msa1037890:three_prime_UTR | 40.0% | |
| CTCGAAGGAAACAATATCTC+AGG | - | chr7_1:74637173-74637192 | None:intergenic | 40.0% | |
| GATATTGTTTCCTTCGAGCA+TGG | + | chr7_1:74637175-74637194 | Msa1037890:intron | 40.0% | |
| TCTGGCTAATCAAGACCATA+CGG | - | chr7_1:74636161-74636180 | None:intergenic | 40.0% | |
| CCGATTAAATCGAGGATGTT+TGG | - | chr7_1:74636212-74636231 | None:intergenic | 40.0% | |
| ! | CGATCATACCGATTAAATCG+AGG | - | chr7_1:74636220-74636239 | None:intergenic | 40.0% |
| ATGTCTCATGTCACATGTGT+AGG | + | chr7_1:74636426-74636445 | Msa1037890:intron | 40.0% | |
| TGTCTCATGTCACATGTGTA+GGG | + | chr7_1:74636427-74636446 | Msa1037890:intron | 40.0% | |
| TATTTGTGCCCACTACTAGT+TGG | + | chr7_1:74636508-74636527 | Msa1037890:three_prime_UTR | 40.0% | |
| GTTGGAGAGAAGCTTGTAAT+TGG | + | chr7_1:74636526-74636545 | Msa1037890:three_prime_UTR | 40.0% | |
| CAATCCAGTGGATGCAAAAT+TGG | - | chr7_1:74636554-74636573 | None:intergenic | 40.0% | |
| CATCCACTGGATTGTATTCA+AGG | + | chr7_1:74636560-74636579 | Msa1037890:three_prime_UTR | 40.0% | |
| CTCGAAGGAAACAATATCTC+AGG | - | chr7_1:74637173-74637192 | None:intergenic | 40.0% | |
| GATATTGTTTCCTTCGAGCA+TGG | + | chr7_1:74637175-74637194 | Msa1037890:intron | 40.0% | |
| GCTTCTCTCCAACTAGTAGT+GGG | - | chr7_1:74636519-74636538 | None:intergenic | 45.0% | |
| AGCTTCTCTCCAACTAGTAG+TGG | - | chr7_1:74636520-74636539 | None:intergenic | 45.0% | |
| GCTTGCAATTGTTTGTGAGG+AGG | - | chr7_1:74636769-74636788 | None:intergenic | 45.0% | |
| CATCCATCTTATGGGATGCA+AGG | - | chr7_1:74636867-74636886 | None:intergenic | 45.0% | |
| TCGTCATCGTCTTCAGTATG+TGG | + | chr7_1:74637215-74637234 | Msa1037890:three_prime_UTR | 45.0% | |
| GCTTCTCTCCAACTAGTAGT+GGG | - | chr7_1:74636519-74636538 | None:intergenic | 45.0% | |
| AGCTTCTCTCCAACTAGTAG+TGG | - | chr7_1:74636520-74636539 | None:intergenic | 45.0% | |
| GCTTGCAATTGTTTGTGAGG+AGG | - | chr7_1:74636769-74636788 | None:intergenic | 45.0% | |
| CATCCATCTTATGGGATGCA+AGG | - | chr7_1:74636867-74636886 | None:intergenic | 45.0% | |
| TCGTCATCGTCTTCAGTATG+TGG | + | chr7_1:74637215-74637234 | Msa1037890:three_prime_UTR | 45.0% | |
| AGTAGCGTCAACTATGGCAG+TGG | - | chr7_1:74636135-74636154 | None:intergenic | 50.0% | |
| CGGATGAGTAGCGTCAACTA+TGG | - | chr7_1:74636141-74636160 | None:intergenic | 50.0% | |
| GTTGACGCTACTCATCCGTA+TGG | + | chr7_1:74636143-74636162 | Msa1037890:three_prime_UTR | 50.0% | |
| ! | GGTGCCAATTTTGCATCCAC+TGG | + | chr7_1:74636547-74636566 | Msa1037890:three_prime_UTR | 50.0% |
| CTGCCTTGCATCCCATAAGA+TGG | + | chr7_1:74636861-74636880 | Msa1037890:intron | 50.0% | |
| CATCTGCAAACCATGCTCGA+AGG | - | chr7_1:74637188-74637207 | None:intergenic | 50.0% | |
| ! | CTTCGAGCATGGTTTGCAGA+TGG | + | chr7_1:74637186-74637205 | Msa1037890:intron | 50.0% |
| AGTAGCGTCAACTATGGCAG+TGG | - | chr7_1:74636135-74636154 | None:intergenic | 50.0% | |
| CGGATGAGTAGCGTCAACTA+TGG | - | chr7_1:74636141-74636160 | None:intergenic | 50.0% | |
| GTTGACGCTACTCATCCGTA+TGG | + | chr7_1:74636143-74636162 | Msa1037890:three_prime_UTR | 50.0% | |
| ! | GGTGCCAATTTTGCATCCAC+TGG | + | chr7_1:74636547-74636566 | Msa1037890:three_prime_UTR | 50.0% |
| CTGCCTTGCATCCCATAAGA+TGG | + | chr7_1:74636861-74636880 | Msa1037890:intron | 50.0% | |
| CATCTGCAAACCATGCTCGA+AGG | - | chr7_1:74637188-74637207 | None:intergenic | 50.0% | |
| ! | CTTCGAGCATGGTTTGCAGA+TGG | + | chr7_1:74637186-74637205 | Msa1037890:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 74636042 | 74637245 | 74636042 | ID=Msa1037890;Name=Msa1037890 |
| chr7_1 | mRNA | 74636042 | 74637245 | 74636042 | ID=Msa1037890-mRNA-1;Parent=Msa1037890;Name=Msa1037890-mRNA-1;_AED=0.65;_eAED=0.90;_QI=13|0|0|0.66|0|0|3|185|19 |
| chr7_1 | exon | 74636042 | 74636164 | 74636042 | ID=Msa1037890-mRNA-1:exon:18858;Parent=Msa1037890-mRNA-1 |
| chr7_1 | exon | 74636488 | 74636581 | 74636488 | ID=Msa1037890-mRNA-1:exon:18859;Parent=Msa1037890-mRNA-1 |
| chr7_1 | exon | 74637205 | 74637245 | 74637205 | ID=Msa1037890-mRNA-1:exon:18860;Parent=Msa1037890-mRNA-1 |
| chr7_1 | five_prime_UTR | 74636042 | 74636054 | 74636042 | ID=Msa1037890-mRNA-1:five_prime_utr;Parent=Msa1037890-mRNA-1 |
| chr7_1 | CDS | 74636055 | 74636114 | 74636055 | ID=Msa1037890-mRNA-1:cds;Parent=Msa1037890-mRNA-1 |
| chr7_1 | three_prime_UTR | 74636115 | 74636164 | 74636115 | ID=Msa1037890-mRNA-1:three_prime_utr;Parent=Msa1037890-mRNA-1 |
| chr7_1 | three_prime_UTR | 74636488 | 74636581 | 74636488 | ID=Msa1037890-mRNA-1:three_prime_utr;Parent=Msa1037890-mRNA-1 |
| chr7_1 | three_prime_UTR | 74637205 | 74637245 | 74637205 | ID=Msa1037890-mRNA-1:three_prime_utr;Parent=Msa1037890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
