AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0669840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669840 MtrunA17_Chr4g0008851 98.378 370 6 0 1 370 1 370 0.0 755
Msa0669840 MtrunA17_Chr7g0274991 76.011 371 86 2 1 370 1 369 0.0 589
Msa0669840 MtrunA17_Chr7g0275011 70.219 366 102 2 9 369 6 369 0.0 528
Msa0669840 MtrunA17_Chr7g0275001 68.802 359 108 3 13 370 7 362 0.0 517
Msa0669840 MtrunA17_Chr1g0189931 70.623 337 97 1 31 367 31 365 0.0 515
Msa0669840 MtrunA17_Chr6g0457921 68.144 361 110 3 13 370 8 366 0.0 508
Msa0669840 MtrunA17_Chr7g0275021 65.854 369 115 3 11 370 4 370 4.19e-179 501
Msa0669840 MtrunA17_Chr1g0189901 65.385 364 117 3 12 368 4 365 3.81e-177 496
Msa0669840 MtrunA17_Chr1g0182811 62.050 361 133 3 10 368 11 369 1.49e-167 472
Msa0669840 MtrunA17_Chr7g0215961 62.500 360 118 3 13 370 12 356 7.12e-165 465
Msa0669840 MtrunA17_Chr1g0189891 62.466 365 123 5 9 369 5 359 8.43e-160 452
Msa0669840 MtrunA17_Chr5g0434621 38.889 342 201 7 10 349 3 338 2.49e-78 244
Msa0669840 MtrunA17_Chr8g0374101 36.512 367 219 9 8 363 10 373 7.73e-74 234
Msa0669840 MtrunA17_Chr4g0068441 37.571 354 213 6 13 363 17 365 1.29e-73 233
Msa0669840 MtrunA17_Chr3g0131321 37.092 337 197 6 32 360 34 363 8.54e-70 223
Msa0669840 MtrunA17_Chr2g0294311 35.657 373 219 8 7 364 5 371 5.67e-69 221
Msa0669840 MtrunA17_Chr8g0380041 36.134 357 219 7 14 366 12 363 7.10e-69 220
Msa0669840 MtrunA17_Chr5g0438641 34.294 347 218 7 1 343 1 341 1.49e-68 219
Msa0669840 MtrunA17_Chr2g0294301 36.283 339 209 5 29 364 32 366 1.79e-68 219
Msa0669840 MtrunA17_Chr3g0077571 35.028 354 223 6 10 363 8 354 4.10e-68 218
Msa0669840 MtrunA17_Chr4g0017431 32.410 361 238 4 7 366 8 363 5.63e-68 218
Msa0669840 MtrunA17_Chr3g0086641 37.464 347 203 8 6 343 5 346 8.57e-68 218
Msa0669840 MtrunA17_Chr3g0105401 37.135 342 205 8 6 343 3 338 1.25e-67 217
Msa0669840 MtrunA17_Chr5g0438621 35.503 338 201 7 15 340 4 336 6.52e-67 215
Msa0669840 MtrunA17_Chr3g0120861 35.802 324 200 6 25 345 31 349 5.83e-66 213
Msa0669840 MtrunA17_Chr2g0285061 37.389 337 196 8 13 343 14 341 7.25e-66 213
Msa0669840 MtrunA17_Chr3g0092131 36.278 317 196 5 34 348 25 337 5.63e-65 210
Msa0669840 MtrunA17_Chr5g0438631 36.709 316 191 6 32 343 28 338 7.02e-64 207
Msa0669840 MtrunA17_Chr5g0444401 35.088 342 206 6 32 365 28 361 8.17e-64 207
Msa0669840 MtrunA17_Chr4g0060811 36.909 317 194 5 34 348 29 341 2.49e-63 206
Msa0669840 MtrunA17_Chr1g0156921 34.375 352 210 7 7 344 8 352 3.74e-63 206
Msa0669840 MtrunA17_Chr3g0099151 34.795 365 218 8 13 366 67 422 7.45e-62 204
Msa0669840 MtrunA17_Chr3g0099161 34.435 363 221 9 13 366 72 426 1.68e-61 203
Msa0669840 MtrunA17_Chr5g0396511 33.934 333 215 4 34 364 48 377 3.23e-61 201
Msa0669840 MtrunA17_Chr1g0156931 35.110 319 199 6 32 348 41 353 3.84e-61 200
Msa0669840 MtrunA17_Chr5g0432101 34.161 322 201 7 32 348 33 348 4.83e-61 200
Msa0669840 MtrunA17_Chr8g0371491 34.286 350 207 8 15 346 8 352 1.15e-60 199
Msa0669840 MtrunA17_Chr2g0330781 34.472 322 200 7 32 348 31 346 3.34e-59 195
Msa0669840 MtrunA17_Chr5g0405831 35.127 316 196 7 32 343 43 353 8.24e-59 194
Msa0669840 MtrunA17_Chr3g0077581 33.604 369 223 10 14 366 8 370 9.96e-59 194
Msa0669840 MtrunA17_Chr3g0099231 32.787 366 230 8 7 364 2 359 2.04e-58 194
Msa0669840 MtrunA17_Chr1g0156901 35.736 333 196 7 32 358 50 370 4.04e-58 193
Msa0669840 MtrunA17_Chr1g0156891 35.328 351 214 8 13 355 20 365 4.19e-58 192
Msa0669840 MtrunA17_Chr2g0301641 32.970 367 220 9 18 369 25 380 6.29e-58 193
Msa0669840 MtrunA17_Chr8g0341001 33.144 353 224 9 1 348 2 347 6.87e-58 192
Msa0669840 MtrunA17_Chr8g0371481 33.742 326 207 7 32 353 41 361 2.12e-57 191
Msa0669840 MtrunA17_Chr3g0085881 35.224 335 199 9 32 364 33 351 5.15e-57 189
Msa0669840 MtrunA17_Chr4g0046151 31.268 355 224 7 13 350 15 366 2.90e-56 188
Msa0669840 MtrunA17_Chr5g0405821 35.331 317 195 8 32 343 43 354 4.23e-56 187
Msa0669840 MtrunA17_Chr8g0371471 32.923 325 210 6 32 353 41 360 6.85e-56 187
Msa0669840 MtrunA17_Chr1g0189911 55.405 148 63 2 221 367 2 147 7.19e-56 180
Msa0669840 MtrunA17_Chr3g0142941 33.438 320 196 6 32 344 47 356 9.17e-56 187
Msa0669840 MtrunA17_Chr1g0156911 34.286 315 200 5 32 344 37 346 1.20e-55 186
Msa0669840 MtrunA17_Chr2g0320671 33.618 351 223 7 1 348 1 344 4.57e-55 184
Msa0669840 MtrunA17_Chr3g0142921 32.424 330 212 7 32 358 36 357 9.46e-53 178
Msa0669840 MtrunA17_Chr2g0283191 31.487 343 222 6 7 339 13 352 3.75e-52 177
Msa0669840 MtrunA17_Chr4g0027521 33.642 324 202 7 32 348 27 344 4.58e-52 176
Msa0669840 MtrunA17_Chr2g0284921 32.353 340 211 7 32 369 34 356 1.77e-50 172
Msa0669840 MtrunA17_Chr2g0284951 32.153 339 212 8 32 367 33 356 2.15e-50 172
Msa0669840 MtrunA17_Chr8g0380031 30.435 368 237 9 1 366 56 406 1.67e-49 171
Msa0669840 MtrunA17_Chr1g0157001 33.043 345 200 8 37 363 41 372 1.71e-49 170
Msa0669840 MtrunA17_Chr8g0349321 32.754 345 208 8 29 364 34 363 2.45e-49 170
Msa0669840 MtrunA17_Chr8g0370951 31.421 366 229 11 13 364 9 366 4.97e-49 169
Msa0669840 MtrunA17_Chr8g0349341 31.522 368 219 11 13 364 13 363 6.38e-47 163
Msa0669840 MtrunA17_Chr2g0285001 30.376 372 223 9 13 367 10 362 6.73e-47 164
Msa0669840 MtrunA17_Chr8g0370981 30.256 390 205 8 30 365 42 418 7.61e-47 164
Msa0669840 MtrunA17_Chr2g0284991 30.294 340 224 7 32 368 33 362 1.87e-46 162
Msa0669840 MtrunA17_Chr7g0228261 72.043 93 26 0 277 369 3 95 5.95e-46 152
Msa0669840 MtrunA17_Chr1g0189921 64.167 120 37 1 13 126 6 125 4.36e-45 152
Msa0669840 MtrunA17_Chr5g0437421 29.268 328 219 5 32 351 32 354 6.43e-45 158
Msa0669840 MtrunA17_Chr8g0344941 28.375 363 229 10 8 351 9 359 2.92e-43 154
Msa0669840 MtrunA17_Chr2g0284941 30.925 346 187 9 34 367 35 340 2.23e-41 148
Msa0669840 MtrunA17_Chr8g0344931 28.533 368 237 10 7 366 12 361 5.00e-41 147
Msa0669840 MtrunA17_Chr8g0349301 33.103 290 174 8 29 314 34 307 1.07e-39 143
Msa0669840 MtrunA17_Chr8g0370961 31.381 239 150 5 129 363 14 242 4.76e-39 139
Msa0669840 MtrunA17_Chr5g0420811 29.032 341 218 11 13 346 11 334 1.63e-38 140
Msa0669840 MtrunA17_Chr3g0085231 26.113 337 226 9 32 364 31 348 2.22e-35 132
Msa0669840 MtrunA17_Chr8g0349331 28.116 345 194 8 29 364 32 331 3.52e-34 129
Msa0669840 MtrunA17_Chr8g0381581 27.660 376 222 15 9 350 15 374 2.39e-31 122
Msa0669840 MtrunA17_Chr1g0160031 28.232 379 226 16 1 350 7 368 3.07e-30 119
Msa0669840 MtrunA17_Chr1g0160011 27.989 368 216 14 13 350 21 369 4.32e-30 119
Msa0669840 MtrunA17_Chr7g0254461 26.722 363 213 14 24 351 35 379 8.23e-30 118
Msa0669840 MtrunA17_Chr7g0271551 28.319 339 208 13 34 357 38 356 4.82e-28 112
Msa0669840 MtrunA17_Chr2g0283481 30.499 341 203 13 32 350 47 375 2.71e-27 111
Msa0669840 MtrunA17_Chr1g0159991 29.040 396 222 16 1 359 4 377 1.11e-26 109
Msa0669840 MtrunA17_Chr7g0229591 37.870 169 103 2 14 181 12 179 1.38e-26 105
Msa0669840 MtrunA17_Chr7g0275291 27.865 384 223 17 1 351 1 363 1.69e-26 108
Msa0669840 MtrunA17_Chr4g0027571 28.125 224 155 4 135 356 3 222 2.76e-26 105
Msa0669840 MtrunA17_Chr2g0283511 29.086 361 222 14 13 350 12 361 1.87e-25 105
Msa0669840 MtrunA17_Chr1g0160101 27.708 397 225 17 5 361 12 386 4.50e-25 105
Msa0669840 MtrunA17_Chr6g0455661 26.941 219 155 3 130 346 238 453 5.80e-25 105
Msa0669840 MtrunA17_Chr6g0455661 50.000 94 44 2 30 123 29 119 3.04e-17 82.8
Msa0669840 MtrunA17_Chr2g0283501 29.825 342 205 13 32 350 31 360 7.66e-25 104
Msa0669840 MtrunA17_Chr6g0459921 26.484 219 156 3 130 346 127 342 1.03e-24 103
Msa0669840 MtrunA17_Chr1g0159971 27.179 390 219 16 3 350 12 378 1.62e-24 103
Msa0669840 MtrunA17_Chr1g0159981 26.289 388 233 16 6 359 19 387 1.75e-24 103
Msa0669840 MtrunA17_Chr7g0273101 26.554 354 214 11 27 350 24 361 5.85e-24 101
Msa0669840 MtrunA17_Chr2g0301581 28.000 375 216 14 1 350 1 346 1.17e-23 100
Msa0669840 MtrunA17_Chr7g0226941 27.762 353 203 15 32 351 33 366 8.49e-23 98.6
Msa0669840 MtrunA17_Chr2g0301541 27.733 375 217 14 1 350 1 346 1.48e-22 97.4
Msa0669840 MtrunA17_Chr8g0352901 27.273 374 229 13 7 351 1 360 4.02e-22 96.3
Msa0669840 MtrunA17_Chr3g0104821 25.770 357 230 13 17 350 29 373 4.97e-22 96.3
Msa0669840 MtrunA17_Chr6g0450731 26.016 369 230 13 5 351 2 349 2.16e-21 94.4
Msa0669840 MtrunA17_Chr6g0450721 27.193 342 210 12 32 357 33 351 4.29e-21 93.2
Msa0669840 MtrunA17_Chr7g0226911 22.835 381 236 13 9 351 12 372 4.55e-21 93.6
Msa0669840 MtrunA17_Chr8g0347751 25.000 368 229 14 16 351 18 370 1.12e-20 92.4
Msa0669840 MtrunA17_Chr1g0191461 25.956 366 225 13 13 349 13 361 1.49e-20 92.0
Msa0669840 MtrunA17_Chr2g0283531 29.630 351 193 17 32 350 31 359 1.53e-20 92.0
Msa0669840 MtrunA17_Chr6g0450701 27.487 382 225 16 5 351 2 366 1.75e-20 91.7
Msa0669840 MtrunA17_Chr6g0469511 45.614 114 60 2 32 144 30 142 1.75e-20 86.7
Msa0669840 MtrunA17_Chr7g0266061 25.000 328 207 12 33 347 43 344 3.00e-20 90.9
Msa0669840 MtrunA17_Chr1g0178931 25.387 323 197 14 30 337 35 328 1.14e-19 89.0
Msa0669840 MtrunA17_Chr6g0450711 27.089 347 207 14 32 351 122 449 1.81e-19 89.4
Msa0669840 MtrunA17_Chr4g0057991 25.723 346 222 13 31 357 38 367 3.19e-19 88.2
Msa0669840 MtrunA17_Chr7g0226931 23.367 398 236 14 3 351 9 386 1.22e-18 86.7
Msa0669840 MtrunA17_Chr4g0027561 42.241 116 66 1 14 128 12 127 1.64e-18 81.3
Msa0669840 MtrunA17_Chr8g0370971 39.456 147 78 4 1 136 1 147 1.81e-18 82.0
Msa0669840 MtrunA17_Chr3g0112821 26.471 340 221 13 31 354 29 355 2.74e-18 85.1
Msa0669840 MtrunA17_Chr1g0178941 25.153 326 202 13 30 337 38 339 2.81e-18 85.1
Msa0669840 MtrunA17_Chr5g0440501 23.868 243 171 6 132 364 11 249 2.96e-18 83.6
Msa0669840 MtrunA17_Chr2g0317271 25.895 363 225 13 12 350 2 344 5.72e-18 84.3
Msa0669840 MtrunA17_Chr1g0198351 25.352 355 209 16 7 337 11 333 7.40e-18 84.0
Msa0669840 MtrunA17_Chr0c01g0489581 26.462 359 216 14 18 350 8 344 2.83e-17 82.4
Msa0669840 MtrunA17_Chr2g0317261 25.620 363 226 13 12 350 2 344 3.14e-17 82.0
Msa0669840 MtrunA17_Chr0c01g0489571 26.462 359 216 14 18 350 8 344 3.90e-17 81.6
Msa0669840 MtrunA17_Chr7g0229581 29.139 151 103 3 208 356 7 155 6.09e-17 77.4
Msa0669840 MtrunA17_Chr2g0301551 26.441 295 170 11 78 350 33 302 2.83e-14 72.8
Msa0669840 MtrunA17_Chr2g0301571 26.441 295 170 11 78 350 33 302 7.99e-14 71.6
Msa0669840 MtrunA17_Chr8g0339251 25.758 330 202 11 7 318 1 305 1.31e-13 71.2
Msa0669840 MtrunA17_Chr2g0301591 26.349 315 178 11 1 293 1 283 3.38e-12 66.2
Msa0669840 MtrunA17_Chr2g0321991 38.393 112 61 2 14 117 8 119 4.30e-12 62.8
Msa0669840 MtrunA17_Chr4g0018571 30.137 146 98 3 205 348 27 170 6.05e-12 63.9
Msa0669840 MtrunA17_Chr2g0284931 25.541 231 136 5 123 353 11 205 5.39e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0669840 AT5G33370.1 70.225 356 104 1 15 370 13 366 0.0 536
Msa0669840 AT3G04290.1 73.099 342 90 1 27 368 24 363 0.0 527
Msa0669840 AT5G18430.1 67.227 357 110 4 12 366 11 362 6.12e-171 481
Msa0669840 AT4G28780.1 63.859 368 120 4 12 369 2 366 2.84e-168 474
Msa0669840 AT5G33370.2 70.357 280 81 1 15 294 13 290 3.58e-144 412
Msa0669840 AT2G23540.1 37.427 342 205 7 32 366 48 387 5.98e-78 245
Msa0669840 AT3G50400.1 39.080 348 199 11 22 360 25 368 3.51e-75 237
Msa0669840 AT2G42990.1 37.249 349 210 7 11 356 8 350 2.75e-74 234
Msa0669840 AT4G18970.1 39.823 339 193 7 30 363 26 358 1.27e-73 233
Msa0669840 AT4G18970.2 39.823 339 193 7 30 363 26 358 6.02e-73 233
Msa0669840 AT5G15720.1 37.101 345 209 5 26 366 24 364 1.01e-72 231
Msa0669840 AT5G37690.1 39.617 313 183 5 34 345 29 336 1.12e-72 230
Msa0669840 AT5G45670.1 35.616 365 226 7 6 366 3 362 1.82e-72 230
Msa0669840 AT1G29660.1 37.685 337 202 6 33 366 33 364 2.25e-70 224
Msa0669840 AT1G71250.1 34.734 357 222 5 15 363 17 370 6.97e-70 224
Msa0669840 AT1G29670.1 35.734 361 219 6 14 366 8 363 2.09e-69 222
Msa0669840 AT5G08460.1 36.716 335 208 4 32 363 49 382 2.67e-69 223
Msa0669840 AT1G29670.2 35.734 361 219 6 14 366 76 431 1.23e-68 222
Msa0669840 AT1G71691.2 38.279 337 200 7 32 367 55 384 4.31e-68 219
Msa0669840 AT4G26790.1 35.938 320 197 6 32 348 29 343 1.11e-67 217
Msa0669840 AT4G26790.2 35.938 320 197 6 32 348 29 343 1.11e-67 217
Msa0669840 AT5G37690.2 38.339 313 179 6 34 345 29 328 3.37e-67 216
Msa0669840 AT1G75880.1 36.250 320 197 5 32 348 52 367 6.85e-67 216
Msa0669840 AT1G75880.2 36.250 320 196 6 32 348 52 366 4.88e-66 214
Msa0669840 AT1G33811.1 36.467 351 211 9 20 363 22 367 4.72e-65 211
Msa0669840 AT2G30310.1 35.783 313 191 7 32 339 34 341 1.87e-64 209
Msa0669840 AT2G30220.1 36.278 317 192 7 32 343 33 344 2.46e-64 209
Msa0669840 AT2G04570.1 35.604 323 200 6 32 351 28 345 2.66e-64 209
Msa0669840 AT1G75890.2 35.913 323 194 8 32 348 47 362 3.27e-64 209
Msa0669840 AT1G75890.3 35.913 323 194 8 32 348 76 391 8.13e-64 209
Msa0669840 AT1G58430.1 36.452 310 189 6 32 337 35 340 2.43e-63 206
Msa0669840 AT1G74460.1 36.000 325 201 6 34 356 25 344 1.17e-62 205
Msa0669840 AT1G06990.1 34.295 312 196 6 32 339 37 343 9.23e-62 202
Msa0669840 AT2G31540.1 36.278 317 192 7 32 343 35 346 9.53e-62 202
Msa0669840 AT5G42170.1 35.000 320 197 6 32 348 50 361 9.80e-62 202
Msa0669840 AT5G03820.2 36.769 359 207 8 1 348 28 377 1.19e-61 202
Msa0669840 AT5G03820.1 36.261 353 199 8 13 348 6 349 2.20e-61 201
Msa0669840 AT1G75890.1 34.627 335 195 9 32 348 47 375 5.00e-61 201
Msa0669840 AT2G24560.1 35.144 313 189 7 32 337 34 339 1.03e-60 199
Msa0669840 AT5G03810.1 37.288 354 201 9 6 348 2 345 1.43e-60 199
Msa0669840 AT3G16370.1 36.909 317 191 7 32 344 30 341 3.05e-60 198
Msa0669840 AT1G75900.1 32.945 343 219 7 6 344 17 352 3.79e-60 198
Msa0669840 AT5G41890.1 31.793 368 226 9 14 363 12 372 7.43e-60 198
Msa0669840 AT1G20120.1 33.851 322 201 7 32 348 78 392 8.42e-60 198
Msa0669840 AT4G10950.2 34.030 335 216 4 32 364 71 402 4.36e-59 197
Msa0669840 AT5G45950.1 33.033 333 211 7 25 353 29 353 1.36e-58 194
Msa0669840 AT1G59406.1 35.202 321 195 6 32 348 30 341 1.78e-58 193
Msa0669840 AT1G59030.1 35.202 321 195 6 32 348 30 341 1.78e-58 193
Msa0669840 AT1G58725.1 35.202 321 195 6 32 348 30 341 1.78e-58 193
Msa0669840 AT5G22810.1 36.615 325 191 9 32 348 34 351 1.85e-58 194
Msa0669840 AT1G20130.2 33.033 333 200 8 32 348 184 509 9.15e-58 196
Msa0669840 AT1G20130.1 33.033 333 200 8 32 348 204 529 1.39e-57 196
Msa0669840 AT1G20132.1 35.238 315 196 6 32 343 61 370 3.93e-57 191
Msa0669840 AT3G53100.1 36.760 321 193 7 32 348 29 343 4.36e-57 190
Msa0669840 AT5G45960.1 32.907 313 202 4 32 339 47 356 5.41e-57 190
Msa0669840 AT4G10950.1 34.226 336 210 6 32 364 71 398 3.16e-56 189
Msa0669840 AT5G63170.1 34.911 338 199 9 5 339 2 321 4.15e-55 184
Msa0669840 AT1G58520.3 34.579 321 190 7 32 348 30 334 1.72e-54 183
Msa0669840 AT1G58525.1 34.579 321 190 7 32 348 30 334 1.72e-54 183
Msa0669840 AT5G55050.1 33.431 341 214 7 33 365 40 375 4.64e-54 182
Msa0669840 AT2G19060.1 32.857 350 207 11 12 350 4 336 9.65e-54 181
Msa0669840 AT5G40990.1 31.481 378 231 11 9 367 6 374 2.31e-53 181
Msa0669840 AT2G19010.1 33.048 351 211 10 17 363 15 345 3.47e-53 179
Msa0669840 AT5G15720.3 34.296 277 176 4 94 366 59 333 6.54e-53 178
Msa0669840 AT2G19010.2 33.048 351 211 10 17 363 45 375 7.90e-53 179
Msa0669840 AT3G43570.1 33.229 319 175 6 32 348 30 312 1.34e-52 177
Msa0669840 AT1G73610.1 34.688 320 188 8 32 348 35 336 4.75e-52 176
Msa0669840 AT2G40250.1 31.875 320 204 5 32 343 36 349 8.79e-52 176
Msa0669840 AT2G19050.1 33.036 336 199 8 33 363 32 346 1.28e-51 176
Msa0669840 AT4G16230.1 43.668 229 115 5 13 231 5 229 4.24e-51 171
Msa0669840 AT5G15720.2 37.545 277 165 5 26 298 24 296 5.24e-51 173
Msa0669840 AT1G20135.1 31.343 335 207 9 17 344 9 327 8.18e-51 173
Msa0669840 AT1G71691.1 34.843 287 180 6 82 367 3 283 6.38e-50 169
Msa0669840 AT4G30140.1 33.634 333 201 8 33 364 34 347 2.49e-49 169
Msa0669840 AT3G14820.1 30.571 350 225 9 14 356 12 350 3.76e-49 169
Msa0669840 AT2G24560.2 33.803 284 174 7 32 308 34 310 3.13e-48 166
Msa0669840 AT1G53940.2 31.429 350 214 12 32 367 39 376 7.29e-48 166
Msa0669840 AT1G23500.1 31.707 328 202 8 27 350 30 339 2.16e-46 162
Msa0669840 AT3G14225.1 30.484 351 218 10 32 366 37 377 3.38e-46 162
Msa0669840 AT3G14225.2 30.659 349 216 10 32 366 37 373 5.50e-46 161
Msa0669840 AT1G71691.3 39.015 264 153 7 32 294 55 311 2.16e-45 158
Msa0669840 AT1G71120.1 32.941 340 205 13 32 363 31 355 9.27e-45 158
Msa0669840 AT1G75910.1 30.938 320 206 6 32 348 28 335 1.48e-44 157
Msa0669840 AT1G75920.2 29.683 347 214 8 15 348 6 335 1.56e-44 157
Msa0669840 AT1G75930.1 32.492 317 194 8 32 343 29 330 1.80e-44 157
Msa0669840 AT1G53990.1 29.521 376 224 13 13 366 8 364 2.37e-43 154
Msa0669840 AT3G43550.1 33.456 272 169 5 26 294 24 286 4.65e-42 149
Msa0669840 AT2G19050.2 34.568 243 151 3 33 275 32 266 8.72e-41 145
Msa0669840 AT1G75920.1 28.453 362 214 9 15 348 1 345 1.11e-40 147
Msa0669840 AT2G03980.2 30.818 318 202 8 32 342 43 349 4.73e-38 140
Msa0669840 AT2G03980.3 30.818 318 202 8 32 342 43 349 4.73e-38 140
Msa0669840 AT2G03980.1 30.818 318 202 8 32 342 43 349 4.73e-38 140
Msa0669840 AT2G03980.4 30.818 318 202 8 32 342 43 349 4.73e-38 140
Msa0669840 AT1G53920.1 27.949 390 245 12 1 366 7 384 6.14e-37 137
Msa0669840 AT2G31550.1 32.701 211 135 4 139 346 2 208 6.82e-36 130
Msa0669840 AT1G75920.3 28.655 342 193 8 15 348 6 304 1.66e-35 132
Msa0669840 AT1G75920.4 27.852 298 191 7 58 348 27 307 6.49e-34 128
Msa0669840 AT1G56670.1 27.869 366 216 13 12 349 12 357 1.48e-30 120
Msa0669840 AT1G54030.1 29.619 341 209 14 30 366 50 363 3.65e-30 120
Msa0669840 AT1G53940.1 30.797 276 167 12 32 297 39 300 3.34e-29 115
Msa0669840 AT1G09390.1 28.809 361 215 12 14 349 11 354 4.75e-28 113
Msa0669840 AT5G45910.1 29.894 378 216 18 5 350 4 364 6.13e-27 110
Msa0669840 AT3G62280.1 28.363 342 205 13 36 359 40 359 9.79e-27 109
Msa0669840 AT5G14450.1 27.273 374 224 14 9 350 16 373 3.61e-26 108
Msa0669840 AT4G01130.1 26.790 377 221 15 13 354 15 371 2.41e-24 103
Msa0669840 AT3G26430.1 28.895 353 199 15 32 350 31 365 4.67e-24 102
Msa0669840 AT3G09930.2 28.060 335 200 14 25 343 32 341 7.70e-24 101
Msa0669840 AT3G09930.1 28.060 335 200 14 25 343 32 341 7.70e-24 101
Msa0669840 AT1G54790.3 26.720 378 226 14 5 350 6 364 8.20e-24 101
Msa0669840 AT3G14220.1 25.069 363 243 12 13 365 9 352 1.27e-23 100
Msa0669840 AT4G16233.1 36.000 125 77 2 240 363 5 127 3.79e-23 94.0
Msa0669840 AT3G27950.1 27.457 346 206 10 32 351 32 358 3.83e-23 99.8
Msa0669840 AT3G05180.1 27.794 349 206 13 32 350 36 368 5.01e-23 99.4
Msa0669840 AT1G54790.1 27.273 352 200 15 34 350 33 363 3.72e-22 97.1
Msa0669840 AT2G04020.2 32.558 215 129 5 32 239 43 248 6.43e-22 95.5
Msa0669840 AT2G04020.1 32.673 202 123 4 32 229 43 235 7.98e-22 94.0
Msa0669840 AT1G67830.1 26.944 360 215 15 25 352 23 366 9.54e-22 95.9
Msa0669840 AT1G54000.1 25.613 367 231 14 15 363 12 354 1.13e-21 95.9
Msa0669840 AT1G28610.2 28.125 384 210 21 6 350 3 359 2.70e-21 94.7
Msa0669840 AT1G54010.1 26.016 369 229 15 15 364 12 355 4.04e-21 94.0
Msa0669840 AT1G28670.1 28.883 367 222 15 12 350 10 365 5.04e-21 94.0
Msa0669840 AT5G03610.1 25.776 322 205 12 34 343 45 344 1.15e-20 92.4
Msa0669840 AT1G28570.1 28.371 356 219 18 31 363 33 375 1.24e-20 92.8
Msa0669840 AT1G54020.2 25.000 348 235 11 21 364 22 347 6.37e-20 90.5
Msa0669840 AT1G28660.1 29.730 370 214 16 12 350 10 364 6.71e-20 90.5
Msa0669840 AT1G56670.2 27.124 306 180 11 12 294 12 297 1.27e-19 88.6
Msa0669840 AT1G28600.1 27.479 353 200 16 31 350 30 359 1.58e-19 89.7
Msa0669840 AT1G28650.1 28.415 366 220 16 14 350 14 366 1.89e-19 89.4
Msa0669840 AT1G28640.1 28.226 372 219 18 12 351 10 365 2.21e-19 89.0
Msa0669840 AT3G14210.1 26.801 347 215 12 32 364 36 357 2.49e-19 89.0
Msa0669840 AT4G16220.1 46.429 112 57 2 13 123 11 120 3.16e-19 86.3
Msa0669840 AT1G54030.2 28.629 248 152 9 30 274 50 275 1.27e-18 85.9
Msa0669840 AT3G48460.1 25.872 344 210 14 34 351 40 364 3.27e-18 85.5
Msa0669840 AT4G01130.3 26.599 297 171 11 93 354 1 285 3.36e-18 84.3
Msa0669840 AT1G54790.2 25.397 378 200 16 34 350 33 389 3.35e-17 82.8
Msa0669840 AT1G28590.1 26.486 370 232 17 7 350 10 365 7.60e-16 79.0
Msa0669840 AT3G62280.2 28.195 266 158 10 36 286 40 287 2.96e-15 75.9
Msa0669840 AT2G36325.1 25.556 360 214 14 9 343 16 346 4.47e-13 70.1

Find 97 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGGATCTTTATGCATTT+TGG 0.113977 4_4:-11695947 Msa0669840:CDS
CATTCCCACCTAAAGTTATT+AGG 0.124247 4_4:+11699066 None:intergenic
AATGCATAAAGATCCCTATT+TGG 0.215680 4_4:+11695951 None:intergenic
ATTGTATTCTTGAACGTTTA+AGG 0.219399 4_4:-11695714 Msa0669840:three_prime_UTR
AATTCATCATCATTATTATT+AGG 0.246629 4_4:+11695806 None:intergenic
CTTCTAACTTGTGCCCAAAT+AGG 0.255756 4_4:-11695965 Msa0669840:CDS
AATCAACTCAATGCTGAAAT+TGG 0.265479 4_4:-11697529 Msa0669840:CDS
ATAAGTGTACTAAGATTATA+TGG 0.279256 4_4:+11695846 None:intergenic
TTTATCAACGATTAGTCTAT+TGG 0.279659 4_4:+11695899 None:intergenic
CACTTATTGCTATGGATTCT+AGG 0.292361 4_4:-11695830 Msa0669840:CDS
ACTGTTTAAAGTATGCTAAT+TGG 0.292401 4_4:+11699156 None:intergenic
GGTGCTAACTTTGCTTCTGC+TGG 0.295567 4_4:-11700190 Msa0669840:CDS
CATACAGAATCTATATGAAT+TGG 0.299167 4_4:-11697695 Msa0669840:intron
CGTGCTGATTCATATCCTTA+TGG 0.309899 4_4:-11700534 Msa0669840:CDS
TCTCAAACTCATAGAGCTTC+TGG 0.319164 4_4:-11700504 Msa0669840:CDS
TCAAGCTCTGGACTCAAATA+TGG 0.322479 4_4:+11700232 None:intergenic
CAATAAACTGCAAAGATCAT+AGG 0.328879 4_4:+11695733 None:intergenic
ATTCCCACCTAAAGTTATTA+GGG 0.330551 4_4:+11699067 None:intergenic
CAGAGGGTTAGTGCACTAAT+TGG 0.330824 4_4:-11699128 Msa0669840:CDS
TGAGTATCGCAAAATTCTTA+TGG 0.332687 4_4:-11698958 Msa0669840:intron
AACTTTGCTTCTGCTGGGAT+TGG 0.344942 4_4:-11700184 Msa0669840:CDS
ATTGGGAGCAAGAAGAGTTT+TGG 0.351874 4_4:-11697677 Msa0669840:CDS
GCATTAACCCTAATAACTTT+AGG 0.353703 4_4:-11699074 Msa0669840:CDS
TTCTAACTTGTGCCCAAATA+GGG 0.362728 4_4:-11695964 Msa0669840:CDS
TCACCACTCACTAGCAAGTT+GGG 0.365485 4_4:-11700743 None:intergenic
TTGAAGGAATAATATTCATT+TGG 0.368127 4_4:+11700679 None:intergenic
CTGTTTAAAGTATGCTAATT+GGG 0.373885 4_4:+11699157 None:intergenic
GTGACAGGAACGGGACCATT+AGG 0.381376 4_4:-11697655 Msa0669840:CDS
ATGCATAAAGATCCCTATTT+GGG 0.385221 4_4:+11695952 None:intergenic
AGGTTGTGTGCCAGCAGAAT+TGG 0.398301 4_4:-11697635 Msa0669840:CDS
AAATGCATTTGCTATGCATT+TGG 0.399484 4_4:-11697479 Msa0669840:CDS
GCATAGATGAACACATGATT+AGG 0.400926 4_4:+11697502 None:intergenic
TCTAATGCTTCATTCCTATA+GGG 0.402387 4_4:-11695769 Msa0669840:three_prime_UTR
ATGCTAATTGGGCAGTAATT+CGG 0.407503 4_4:+11699168 None:intergenic
TTGGCTATGCAAGGAAGAAA+TGG 0.409678 4_4:-11697616 Msa0669840:CDS
ATCTAATGCTTCATTCCTAT+AGG 0.432403 4_4:-11695770 Msa0669840:three_prime_UTR
ATGAGGAAGACAACATAATC+AGG 0.437834 4_4:+11698984 None:intergenic
GTGCTAACTTTGCTTCTGCT+GGG 0.440069 4_4:-11700189 Msa0669840:CDS
AGTCTATTGGCTCTTTCTGA+TGG 0.442836 4_4:+11695912 None:intergenic
GCTCTTTCTGATGGATGAAA+GGG 0.446836 4_4:+11695921 None:intergenic
TCTTAGTACACTTATTGCTA+TGG 0.450346 4_4:-11695838 Msa0669840:CDS
TCTGCTGGCACACAACCTAA+TGG 0.453033 4_4:+11697640 None:intergenic
ATTATATGGGTGCATGTAAT+CGG 0.455255 4_4:+11695860 None:intergenic
TATTTGAGTCCAGAGCTTGA+TGG 0.458469 4_4:-11700229 Msa0669840:CDS
CTCACCACTCACTAGCAAGT+TGG 0.459599 4_4:-11700744 None:intergenic
GGACTCAAATATGGTAATGT+AGG 0.461253 4_4:+11700241 None:intergenic
GGCTCTTTCTGATGGATGAA+AGG 0.468116 4_4:+11695920 None:intergenic
GTCAGGCATGTTGAGGCCAT+TGG 0.468967 4_4:+11700473 None:intergenic
ATCGTTGATAAATTTATGAC+TGG 0.473147 4_4:-11695888 Msa0669840:CDS
AAGAGCATATTCACGAGATC+TGG 0.473248 4_4:+11699007 None:intergenic
CTTTGAGACATTAATTCCAA+TGG 0.484087 4_4:-11700712 Msa0669840:exon
GATGGTGAGAGGTTACTTGT+TGG 0.484784 4_4:-11700211 Msa0669840:CDS
GAGGTAGCACTCAACTAATA+AGG 0.485220 4_4:+11700451 None:intergenic
GGTTACAACCACGACCCTAT+AGG 0.485545 4_4:+11695755 None:intergenic
ATACAGAATCTATATGAATT+GGG 0.488950 4_4:-11697694 Msa0669840:intron
CATAGTCCAACTCCATTGTA+TGG 0.492410 4_4:+11695996 None:intergenic
CCTTGCATAGCCAATTCTGC+TGG 0.494918 4_4:+11697625 None:intergenic
TTTGGGCACAAGTTAGAAGC+TGG 0.497265 4_4:+11695969 None:intergenic
GCTTCTGGTCGTTTCTCCAA+TGG 0.503907 4_4:-11700489 Msa0669840:CDS
GTTTGAGAATCAATTCCATA+AGG 0.506762 4_4:+11700519 None:intergenic
AACACACAAAGAAATATTGA+AGG 0.510102 4_4:+11700663 None:intergenic
AACCTCTCACCATCAAGCTC+TGG 0.517973 4_4:+11700220 None:intergenic
AATAAACTGCAAAGATCATA+GGG 0.521338 4_4:+11695734 None:intergenic
TTAACCCTAATAACTTTAGG+TGG 0.521401 4_4:-11699071 Msa0669840:CDS
CAACTCAATGCTGAAATTGG+TGG 0.521897 4_4:-11697526 Msa0669840:CDS
AAACATGCATGCTGTGGTCA+AGG 0.523146 4_4:-11696020 Msa0669840:CDS
TTAATCAATTGAACAAGTTG+AGG 0.526832 4_4:+11697550 None:intergenic
TTCACGAGATCTGGCTGAGT+AGG 0.549249 4_4:+11699016 None:intergenic
GCTTCATTCCTATAGGGTCG+TGG 0.549624 4_4:-11695763 Msa0669840:three_prime_UTR
CAAGGACCATACAATGGAGT+TGG 0.550513 4_4:-11696002 Msa0669840:CDS
AGCACTCAACTAATAAGGTC+AGG 0.551255 4_4:+11700456 None:intergenic
CAGCACGAGCAGTAGTGGCT+AGG 0.552042 4_4:+11700550 None:intergenic
GTTTCTAATCCACAAGCATA+CGG 0.553825 4_4:-11697451 Msa0669840:intron
GTGTTGATCACCTTGAGCAT+TGG 0.558772 4_4:-11700645 Msa0669840:CDS
TCACGAGATCTGGCTGAGTA+GGG 0.559568 4_4:+11699017 None:intergenic
TGAATCAGCACGAGCAGTAG+TGG 0.564727 4_4:+11700545 None:intergenic
TTGTTGAACACCAATGCTCA+AGG 0.567686 4_4:+11700635 None:intergenic
TTAGTGCACTAACCCTCTGC+TGG 0.569925 4_4:+11699132 None:intergenic
GGAAATATACCGTATGCTTG+TGG 0.571755 4_4:+11697442 None:intergenic
TGTGTTTGGTGATTCTCTTG+TGG 0.575556 4_4:-11700592 Msa0669840:CDS
AAGTTATTAGGGTTAATGCT+TGG 0.575775 4_4:+11699078 None:intergenic
TAAGTGTACTAAGATTATAT+GGG 0.583474 4_4:+11695847 None:intergenic
AAGTTAGTAGCTGTTTGAAG+AGG 0.588986 4_4:+11697580 None:intergenic
CTCTTTCTGATGGATGAAAG+GGG 0.589840 4_4:+11695922 None:intergenic
GGTGATTCTCTTGTGGACAA+TGG 0.593184 4_4:-11700585 Msa0669840:CDS
CCAGCAGAATTGGCTATGCA+AGG 0.594783 4_4:-11697625 Msa0669840:CDS
TAACCCTAATAACTTTAGGT+GGG 0.599439 4_4:-11699070 Msa0669840:CDS
ATTGGAATTCTCAATGACAC+TGG 0.602237 4_4:-11700166 Msa0669840:CDS
GTCCAGAGCTTGATGGTGAG+AGG 0.603280 4_4:-11700222 Msa0669840:CDS
TAATAAGGTCAGGCATGTTG+AGG 0.615842 4_4:+11700466 None:intergenic
TGCACTAATTGGAGAAAGTG+AGG 0.617026 4_4:-11699117 Msa0669840:CDS
CACCACTCACTAGCAAGTTG+GGG 0.623635 4_4:-11700742 None:intergenic
CTTTAAACAGTACCAGCAGA+GGG 0.628353 4_4:-11699144 Msa0669840:CDS
CAAGGAAGAAATGGAGAGTG+TGG 0.633620 4_4:-11697607 Msa0669840:CDS
ACTTTAAACAGTACCAGCAG+AGG 0.640496 4_4:-11699145 Msa0669840:CDS
ACATCAAAACATGCATGCTG+TGG 0.707273 4_4:-11696026 Msa0669840:CDS
TGTGGTCAAGGACCATACAA+TGG 0.717474 4_4:-11696008 Msa0669840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAAAATTTTATTTTTT+TGG + chr4_4:11697908-11697927 None:intergenic 0.0%
!!! AAATAAAATTTTAAATTAAA+AGG - chr4_4:11697911-11697930 Msa0669840:intron 0.0%
!!! TTTCATCTAATATATTTTTT+AGG - chr4_4:11696050-11696069 Msa0669840:intron 10.0%
!!! TTCATCTAATATATTTTTTA+GGG - chr4_4:11696051-11696070 Msa0669840:intron 10.0%
!! ACAAAAAAATAAATATTAGT+AGG + chr4_4:11697760-11697779 None:intergenic 10.0%
!!! TTTTTTTTTTTAGAAATGTT+GGG + chr4_4:11698198-11698217 None:intergenic 10.0%
!!! TTTTTTTTTTTTAGAAATGT+TGG + chr4_4:11698199-11698218 None:intergenic 10.0%
!!! ATGAAATTTTTTTTTTTATG+AGG - chr4_4:11698368-11698387 Msa0669840:intron 10.0%
!!! TGAAATTTTTTTTTTTATGA+GGG - chr4_4:11698369-11698388 Msa0669840:intron 10.0%
!! ATAATATAATAATTGATGTA+CGG + chr4_4:11698606-11698625 None:intergenic 10.0%
!! TTGAATATAAATTCATTATA+TGG + chr4_4:11699671-11699690 None:intergenic 10.0%
!! AAATTTGTATAATACATATA+TGG + chr4_4:11699825-11699844 None:intergenic 10.0%
!! CATATATAAAAAACAAAAAA+TGG + chr4_4:11700318-11700337 None:intergenic 10.0%
!!! GAAGAAAATCATATATATTT+TGG + chr4_4:11696396-11696415 None:intergenic 15.0%
!!! TCAAGAAAATCATTTTTTTA+AGG + chr4_4:11696418-11696437 None:intergenic 15.0%
!!! ATTGATTTTCAAATTTCTAA+TGG + chr4_4:11696663-11696682 None:intergenic 15.0%
!!! GTAAATTTTTATTGTGTATT+TGG + chr4_4:11697019-11697038 None:intergenic 15.0%
!! ACAATAAAAATTTACGAATT+TGG - chr4_4:11697024-11697043 Msa0669840:intron 15.0%
!! AATGATGAAAATTAAACAAA+GGG + chr4_4:11697466-11697485 None:intergenic 15.0%
!! AAATGATGAAAATTAAACAA+AGG + chr4_4:11697467-11697486 None:intergenic 15.0%
!!! TTCAACTGTTTTTATATATA+TGG + chr4_4:11697670-11697689 None:intergenic 15.0%
!! TATATATAAAAACAGTTGAA+TGG - chr4_4:11697670-11697689 Msa0669840:CDS 15.0%
!! TTAGCTATATAGTTAATAAA+AGG - chr4_4:11697842-11697861 Msa0669840:intron 15.0%
!! TAGCTATATAGTTAATAAAA+GGG - chr4_4:11697843-11697862 Msa0669840:intron 15.0%
!!! CAAAGAAACTTTTATATTAA+GGG + chr4_4:11698038-11698057 None:intergenic 15.0%
!!! ACAAAGAAACTTTTATATTA+AGG + chr4_4:11698039-11698058 None:intergenic 15.0%
!!! AGAAGCTTTTTTATTTTTTT+TGG + chr4_4:11698136-11698155 None:intergenic 15.0%
!!! ATCTATTTTATTTCAATATG+TGG - chr4_4:11698268-11698287 Msa0669840:intron 15.0%
!!! GAATTAAATGTGTTTTTTTT+TGG - chr4_4:11698400-11698419 Msa0669840:intron 15.0%
!!! ATGTGGATTTTAATATTAAT+CGG + chr4_4:11698506-11698525 None:intergenic 15.0%
!!! TTTTACTATATGGTTATATT+TGG + chr4_4:11698540-11698559 None:intergenic 15.0%
!!! AATTCAACATTTTTACTATA+TGG + chr4_4:11698550-11698569 None:intergenic 15.0%
!! AAACACAATTATTCATTTAT+TGG - chr4_4:11699014-11699033 Msa0669840:CDS 15.0%
!!! ACTTCATAACATTTTATTTT+AGG + chr4_4:11699523-11699542 None:intergenic 15.0%
!! ATATATTACTACTACATATT+AGG + chr4_4:11700108-11700127 None:intergenic 15.0%
!! GATAAATAATACTTTCAAAT+TGG + chr4_4:11700294-11700313 None:intergenic 15.0%
!!! TTTTTGTTTTTTATATATGC+AGG - chr4_4:11700319-11700338 Msa0669840:intron 15.0%
!! AATTCATCATCATTATTATT+AGG + chr4_4:11700572-11700591 None:intergenic 15.0%
!! ATGATGAATTTAAAAAATCT+AGG - chr4_4:11700582-11700601 Msa0669840:CDS 15.0%
!! TTGAAGGAATAATATTCATT+TGG + chr4_4:11695699-11695718 None:intergenic 20.0%
!!! AAGACACGAAAATTAATTTT+TGG - chr4_4:11696690-11696709 Msa0669840:intron 20.0%
!!! AATTTTTGGATCATACATTT+AGG - chr4_4:11696704-11696723 Msa0669840:intron 20.0%
!!! ATTTTTGGATCATACATTTA+GGG - chr4_4:11696705-11696724 Msa0669840:intron 20.0%
!!! CCAAATTTCAGATAAAATTT+TGG + chr4_4:11696995-11697014 None:intergenic 20.0%
!!! CCAAAATTTTATCTGAAATT+TGG - chr4_4:11696992-11697011 Msa0669840:intron 20.0%
!! TTAGATAATTAGATACAGAT+AGG + chr4_4:11697162-11697181 None:intergenic 20.0%
!!! TTTTGTGAACAACTATTATT+TGG - chr4_4:11697333-11697352 Msa0669840:intron 20.0%
!! TTTCATAAGGAAAATACTAT+AGG + chr4_4:11697734-11697753 None:intergenic 20.0%
!!! TATTAGTAGGTTTTTTCATA+AGG + chr4_4:11697747-11697766 None:intergenic 20.0%
!!! TTTTTTATTTTTTTTGGTGG+TGG + chr4_4:11698130-11698149 None:intergenic 20.0%
!!! AGCTTTTTTATTTTTTTTGG+TGG + chr4_4:11698133-11698152 None:intergenic 20.0%
!!! ACATTATCTTTAGAAATGTT+GGG + chr4_4:11698239-11698258 None:intergenic 20.0%
!!! AACATTATCTTTAGAAATGT+TGG + chr4_4:11698240-11698259 None:intergenic 20.0%
!!! TTTTTTTATGAGGGTTAATT+AGG - chr4_4:11698378-11698397 Msa0669840:intron 20.0%
!! TAGATGAGTTAATTAATGTT+TGG - chr4_4:11698428-11698447 Msa0669840:intron 20.0%
!! ATTCAATGTTATAACACAAT+TGG + chr4_4:11698654-11698673 None:intergenic 20.0%
!! ATACAGAATCTATATGAATT+GGG - chr4_4:11698681-11698700 Msa0669840:intron 20.0%
!! GTATATTTCCAATCTTAATT+TGG - chr4_4:11698946-11698965 Msa0669840:intron 20.0%
!! AAGTTTAACCAAATTAAGAT+TGG + chr4_4:11698957-11698976 None:intergenic 20.0%
!! TATGCTAGATTTAAATTGTT+AGG - chr4_4:11699071-11699090 Msa0669840:CDS 20.0%
!! AAAATAAAAGACAAAACTCT+AGG + chr4_4:11699158-11699177 None:intergenic 20.0%
!!! TAATTAATATGTTTAGCTCT+TGG - chr4_4:11699183-11699202 Msa0669840:intron 20.0%
!! TAATGAATTTATATTCAACC+TGG - chr4_4:11699673-11699692 Msa0669840:intron 20.0%
!! TACTATATATTGAACCATAT+AGG + chr4_4:11699968-11699987 None:intergenic 20.0%
!!! ACATATTTTCTTAGATGTTT+AGG + chr4_4:11700189-11700208 None:intergenic 20.0%
!! TAAGTGTACTAAGATTATAT+GGG + chr4_4:11700531-11700550 None:intergenic 20.0%
!! ATAAGTGTACTAAGATTATA+TGG + chr4_4:11700532-11700551 None:intergenic 20.0%
!!! ATTTGGTTTTTTTGTTCCAT+TGG + chr4_4:11695682-11695701 None:intergenic 25.0%
! AACACACAAAGAAATATTGA+AGG + chr4_4:11695715-11695734 None:intergenic 25.0%
! CCTATCACATTCATAATATA+TGG + chr4_4:11696095-11696114 None:intergenic 25.0%
! CCATATATTATGAATGTGAT+AGG - chr4_4:11696092-11696111 Msa0669840:intron 25.0%
! AATGTGATAGGTGAAAAAAT+TGG - chr4_4:11696104-11696123 Msa0669840:intron 25.0%
! ATGTGATAGGTGAAAAAATT+GGG - chr4_4:11696105-11696124 Msa0669840:intron 25.0%
!! AAACTAGAATTTTCCTTTCA+CGG - chr4_4:11696293-11696312 Msa0669840:intron 25.0%
! TAGTATAAGATATGGAGTTT+AGG + chr4_4:11696359-11696378 None:intergenic 25.0%
! AACTCCATATCTTATACTAT+TGG - chr4_4:11696360-11696379 Msa0669840:intron 25.0%
! TGTACCAATAGTATAAGATA+TGG + chr4_4:11696367-11696386 None:intergenic 25.0%
! GATACTACTACATATAATGA+TGG - chr4_4:11697062-11697081 Msa0669840:intron 25.0%
! TCATTACACAGGTAAATTTA+GGG + chr4_4:11697103-11697122 None:intergenic 25.0%
! TTCATTACACAGGTAAATTT+AGG + chr4_4:11697104-11697123 None:intergenic 25.0%
!! ATTGATTTCTTTCATTACAC+AGG + chr4_4:11697114-11697133 None:intergenic 25.0%
!! CTGTTTAAAGTATGCTAATT+GGG + chr4_4:11697221-11697240 None:intergenic 25.0%
!! ACTGTTTAAAGTATGCTAAT+TGG + chr4_4:11697222-11697241 None:intergenic 25.0%
! GACTTTGACCAAATATATTA+GGG + chr4_4:11697646-11697665 None:intergenic 25.0%
! TGACTTTGACCAAATATATT+AGG + chr4_4:11697647-11697666 None:intergenic 25.0%
! TGAGTAAAGAACCTTTAAAT+TGG - chr4_4:11697781-11697800 Msa0669840:intron 25.0%
! GAGTAAAGAACCTTTAAATT+GGG - chr4_4:11697782-11697801 Msa0669840:intron 25.0%
! AATAAAAGGGTTATGTTAAC+CGG - chr4_4:11697856-11697875 Msa0669840:intron 25.0%
! CAAATATAGTAACATCACAT+TGG + chr4_4:11697976-11697995 None:intergenic 25.0%
! ATATTAAGGGTAATGTTAAC+CGG + chr4_4:11698025-11698044 None:intergenic 25.0%
! AACAATGCATAATATATGCA+AGG - chr4_4:11698085-11698104 Msa0669840:intron 25.0%
! TACTATATGGTTATATTTGG+TGG + chr4_4:11698537-11698556 None:intergenic 25.0%
! ATAATAATTGATGTACGGAT+TGG + chr4_4:11698601-11698620 None:intergenic 25.0%
! CATACAGAATCTATATGAAT+TGG - chr4_4:11698680-11698699 Msa0669840:intron 25.0%
! TTAATCAATTGAACAAGTTG+AGG + chr4_4:11698828-11698847 None:intergenic 25.0%
! TTTGACTAAATGTAGCTATT+TGG - chr4_4:11699258-11699277 Msa0669840:intron 25.0%
! AAGTAGATCAATTATGATGA+GGG - chr4_4:11699300-11699319 Msa0669840:intron 25.0%
!!! GTGTAATTTAAGTGTTGAAT+AGG - chr4_4:11699426-11699445 Msa0669840:intron 25.0%
! GGATTTGACAAAAAAAATGT+AGG - chr4_4:11699611-11699630 Msa0669840:intron 25.0%
! TATATTATCTTGAACGAGTT+GGG + chr4_4:11699642-11699661 None:intergenic 25.0%
! AAATCACAAAATAATGCTAG+TGG + chr4_4:11699709-11699728 None:intergenic 25.0%
!! CAAATTTTACAAATTCACGA+TGG - chr4_4:11699838-11699857 Msa0669840:intron 25.0%
!!! TACCTTTTTTAACAGTGTTA+CGG + chr4_4:11699888-11699907 None:intergenic 25.0%
! AACATAATCCATTTGAATAG+TGG + chr4_4:11700029-11700048 None:intergenic 25.0%
! TATGTTGCAATCATGTTAAA+TGG - chr4_4:11700043-11700062 Msa0669840:intron 25.0%
! TTACTACTACATATTAGGAA+TGG + chr4_4:11700103-11700122 None:intergenic 25.0%
!!! AAATGTTTTTTCAATGAGCA+TGG + chr4_4:11700156-11700175 None:intergenic 25.0%
! TTATACCAACAAAAGTTTGT+GGG + chr4_4:11700220-11700239 None:intergenic 25.0%
! ATTATACCAACAAAAGTTTG+TGG + chr4_4:11700221-11700240 None:intergenic 25.0%
!!! TTTATCAACGATTAGTCTAT+TGG + chr4_4:11700479-11700498 None:intergenic 25.0%
!! ATCGTTGATAAATTTATGAC+TGG - chr4_4:11700487-11700506 Msa0669840:CDS 25.0%
! AATAAACTGCAAAGATCATA+GGG + chr4_4:11700644-11700663 None:intergenic 25.0%
! ATTGTATTCTTGAACGTTTA+AGG - chr4_4:11700661-11700680 Msa0669840:CDS 25.0%
!!! AAATGAGTTTTGTTGTTAAG+TGG - chr4_4:11700710-11700729 Msa0669840:exon 25.0%
!! CTTTGAGACATTAATTCCAA+TGG - chr4_4:11695663-11695682 Msa0669840:three_prime_UTR 30.0%
GTTTGAGAATCAATTCCATA+AGG + chr4_4:11695859-11695878 None:intergenic 30.0%
! GAGAGTATGTTCAAAAATGA+AGG - chr4_4:11696727-11696746 Msa0669840:intron 30.0%
AAGTTATTAGGGTTAATGCT+TGG + chr4_4:11697300-11697319 None:intergenic 30.0%
GCATTAACCCTAATAACTTT+AGG - chr4_4:11697301-11697320 Msa0669840:intron 30.0%
TTAACCCTAATAACTTTAGG+TGG - chr4_4:11697304-11697323 Msa0669840:intron 30.0%
TAACCCTAATAACTTTAGGT+GGG - chr4_4:11697305-11697324 Msa0669840:intron 30.0%
ATTCCCACCTAAAGTTATTA+GGG + chr4_4:11697311-11697330 None:intergenic 30.0%
! TGAGTATCGCAAAATTCTTA+TGG - chr4_4:11697417-11697436 Msa0669840:intron 30.0%
! TAAACAAAGGGAAGTACATA+AGG + chr4_4:11697454-11697473 None:intergenic 30.0%
!! GTTGTTACATCACACTTTTT+GGG - chr4_4:11697597-11697616 Msa0669840:CDS 30.0%
!!! CACTTTTTGGGTCATAATAT+AGG - chr4_4:11697609-11697628 Msa0669840:CDS 30.0%
TGTATCAAAGCCCAATTTAA+AGG + chr4_4:11697795-11697814 None:intergenic 30.0%
ATGTAACGGTAAGATTCAAT+TGG - chr4_4:11698456-11698475 Msa0669840:intron 30.0%
! TATATGGTTATATTTGGTGG+TGG + chr4_4:11698534-11698553 None:intergenic 30.0%
!! TACGGATTGGAAAAAATAGA+GGG + chr4_4:11698588-11698607 None:intergenic 30.0%
ACACAATTGGTATGAATTGT+TGG + chr4_4:11698641-11698660 None:intergenic 30.0%
AATCAACTCAATGCTGAAAT+TGG - chr4_4:11698846-11698865 Msa0669840:intron 30.0%
!! AAATGCATTTGCTATGCATT+TGG - chr4_4:11698896-11698915 Msa0669840:intron 30.0%
AGCATATGAACATAGTACAT+AGG + chr4_4:11699057-11699076 None:intergenic 30.0%
! CTAGGTAGGTAACAAATTTT+TGG + chr4_4:11699140-11699159 None:intergenic 30.0%
TAAAAGACAAAACTCTAGGT+AGG + chr4_4:11699154-11699173 None:intergenic 30.0%
!! TTAATATGTTTAGCTCTTGG+TGG - chr4_4:11699186-11699205 Msa0669840:intron 30.0%
ATCTACTATCTCAAGATCTT+AGG + chr4_4:11699234-11699253 None:intergenic 30.0%
! CTACTTGCTACAACATTAAA+TGG + chr4_4:11699286-11699305 None:intergenic 30.0%
CAAGTAGATCAATTATGATG+AGG - chr4_4:11699299-11699318 Msa0669840:intron 30.0%
AGTAGATCAATTATGATGAG+GGG - chr4_4:11699301-11699320 Msa0669840:intron 30.0%
ACTCATTGTGACACAAATTA+TGG - chr4_4:11699352-11699371 Msa0669840:intron 30.0%
GACACAAATTATGGATTTCT+TGG - chr4_4:11699361-11699380 Msa0669840:intron 30.0%
AATATTACGTGGATAGGTTT+GGG + chr4_4:11699589-11699608 None:intergenic 30.0%
AAATATTACGTGGATAGGTT+TGG + chr4_4:11699590-11699609 None:intergenic 30.0%
! AACCTATCCACGTAATATTT+TGG - chr4_4:11699590-11699609 Msa0669840:intron 30.0%
ATCCAAAATATTACGTGGAT+AGG + chr4_4:11699595-11699614 None:intergenic 30.0%
GTCAAATCCAAAATATTACG+TGG + chr4_4:11699600-11699619 None:intergenic 30.0%
CTATATTATCTTGAACGAGT+TGG + chr4_4:11699643-11699662 None:intergenic 30.0%
CACTGTTAAAAAAGGTAAGA+TGG - chr4_4:11699891-11699910 Msa0669840:intron 30.0%
! TTTTTCCCACAAACTTTTGT+TGG - chr4_4:11700212-11700231 Msa0669840:CDS 30.0%
ATGCATAAAGATCCCTATTT+GGG + chr4_4:11700426-11700445 None:intergenic 30.0%
AATGCATAAAGATCCCTATT+TGG + chr4_4:11700427-11700446 None:intergenic 30.0%
! ATAGGGATCTTTATGCATTT+TGG - chr4_4:11700428-11700447 Msa0669840:intron 30.0%
! TAGGGATCTTTATGCATTTT+GGG - chr4_4:11700429-11700448 Msa0669840:intron 30.0%
ATTATATGGGTGCATGTAAT+CGG + chr4_4:11700518-11700537 None:intergenic 30.0%
TCTTAGTACACTTATTGCTA+TGG - chr4_4:11700537-11700556 Msa0669840:CDS 30.0%
ATCTAATGCTTCATTCCTAT+AGG - chr4_4:11700605-11700624 Msa0669840:CDS 30.0%
TCTAATGCTTCATTCCTATA+GGG - chr4_4:11700606-11700625 Msa0669840:CDS 30.0%
CAATAAACTGCAAAGATCAT+AGG + chr4_4:11700645-11700664 None:intergenic 30.0%
!!! GCAAGAGCATTTTTTGTGTT+TGG - chr4_4:11695769-11695788 Msa0669840:three_prime_UTR 35.0%
! GGACTCAAATATGGTAATGT+AGG + chr4_4:11696137-11696156 None:intergenic 35.0%
ATTGGAATTCTCAATGACAC+TGG - chr4_4:11696209-11696228 Msa0669840:intron 35.0%
TAGATCCTCTCATAAATGAG+AGG + chr4_4:11696786-11696805 None:intergenic 35.0%
GCAATTACATTTAGCACACA+TGG + chr4_4:11696822-11696841 None:intergenic 35.0%
!! CTCAAAGTTTTGTACACGTA+CGG + chr4_4:11696876-11696895 None:intergenic 35.0%
ATGCTAATTGGGCAGTAATT+CGG + chr4_4:11697210-11697229 None:intergenic 35.0%
CATTCCCACCTAAAGTTATT+AGG + chr4_4:11697312-11697331 None:intergenic 35.0%
ATGAGGAAGACAACATAATC+AGG + chr4_4:11697394-11697413 None:intergenic 35.0%
! TTTTGCGATACTCAGAAATG+AGG + chr4_4:11697411-11697430 None:intergenic 35.0%
! AAAGGGAAGTACATAAGGAT+AGG + chr4_4:11697449-11697468 None:intergenic 35.0%
! CGTTGTTACATCACACTTTT+TGG - chr4_4:11697596-11697615 Msa0669840:CDS 35.0%
CTCCTAAGCCCTAATATATT+TGG - chr4_4:11697635-11697654 Msa0669840:CDS 35.0%
GACCAAATATATTAGGGCTT+AGG + chr4_4:11697640-11697659 None:intergenic 35.0%
GGTAAGAACACATTCAAAGT+TGG - chr4_4:11697691-11697710 Msa0669840:CDS 35.0%
ACTATATTTGCTTCCGTAAC+CGG - chr4_4:11697986-11698005 Msa0669840:intron 35.0%
TGCATAATATATGCAAGGTC+TGG - chr4_4:11698090-11698109 Msa0669840:intron 35.0%
!!! TTATTTTTTTTGGTGGTGGC+CGG + chr4_4:11698126-11698145 None:intergenic 35.0%
AATGTTTGGCAAGCATGTAA+CGG - chr4_4:11698442-11698461 Msa0669840:intron 35.0%
!! GTACGGATTGGAAAAAATAG+AGG + chr4_4:11698589-11698608 None:intergenic 35.0%
AAGTTAGTAGCTGTTTGAAG+AGG + chr4_4:11698798-11698817 None:intergenic 35.0%
GCATAGATGAACACATGATT+AGG + chr4_4:11698876-11698895 None:intergenic 35.0%
GTTTCTAATCCACAAGCATA+CGG - chr4_4:11698924-11698943 Msa0669840:intron 35.0%
CCTTCTAACTAACATGACTA+GGG + chr4_4:11699102-11699121 None:intergenic 35.0%
ACCTTCTAACTAACATGACT+AGG + chr4_4:11699103-11699122 None:intergenic 35.0%
!! TTGTGTCACAATGAGTTGAT+CGG + chr4_4:11699348-11699367 None:intergenic 35.0%
TGTGAATGTAGCTTAAGACA+TGG - chr4_4:11699395-11699414 Msa0669840:intron 35.0%
TGAATTTGTCGCAGTTACAA+TGG - chr4_4:11699764-11699783 Msa0669840:intron 35.0%
TTACAAATTCACGATGGCTT+AGG - chr4_4:11699844-11699863 Msa0669840:intron 35.0%
!!! CTTTTTTAACAGTGTTACGG+TGG + chr4_4:11699885-11699904 None:intergenic 35.0%
CACCGTAACACTGTTAAAAA+AGG - chr4_4:11699883-11699902 Msa0669840:intron 35.0%
AACCACAACCACTATTCAAA+TGG - chr4_4:11700018-11700037 Msa0669840:intron 35.0%
ATCCATTTGAATAGTGGTTG+TGG + chr4_4:11700023-11700042 None:intergenic 35.0%
TGCAATCATGTTAAATGGTG+TGG - chr4_4:11700048-11700067 Msa0669840:intron 35.0%
GCAATCATGTTAAATGGTGT+GGG - chr4_4:11700049-11700068 Msa0669840:intron 35.0%
CAATCATGTTAAATGGTGTG+GGG - chr4_4:11700050-11700069 Msa0669840:intron 35.0%
AATCATGTTAAATGGTGTGG+GGG - chr4_4:11700051-11700070 Msa0669840:intron 35.0%
! TTCTAACTTGTGCCCAAATA+GGG - chr4_4:11700411-11700430 Msa0669840:intron 35.0%
CACTTATTGCTATGGATTCT+AGG - chr4_4:11700545-11700564 Msa0669840:CDS 35.0%
TTGTTGAACACCAATGCTCA+AGG + chr4_4:11695743-11695762 None:intergenic 40.0%
! TGTGTTTGGTGATTCTCTTG+TGG - chr4_4:11695783-11695802 Msa0669840:three_prime_UTR 40.0%
!! CGTGCTGATTCATATCCTTA+TGG - chr4_4:11695841-11695860 Msa0669840:CDS 40.0%
TCTCAAACTCATAGAGCTTC+TGG - chr4_4:11695871-11695890 Msa0669840:CDS 40.0%
TAATAAGGTCAGGCATGTTG+AGG + chr4_4:11695912-11695931 None:intergenic 40.0%
AGCACTCAACTAATAAGGTC+AGG + chr4_4:11695922-11695941 None:intergenic 40.0%
GAGGTAGCACTCAACTAATA+AGG + chr4_4:11695927-11695946 None:intergenic 40.0%
!! TCAAGCTCTGGACTCAAATA+TGG + chr4_4:11696146-11696165 None:intergenic 40.0%
TATTTGAGTCCAGAGCTTGA+TGG - chr4_4:11696146-11696165 Msa0669840:intron 40.0%
ATTGCTGTGTTAACCGTGAA+AGG + chr4_4:11696309-11696328 None:intergenic 40.0%
TGTGACCTCTCATTTATGAG+AGG - chr4_4:11696778-11696797 Msa0669840:intron 40.0%
ACTTTAAACAGTACCAGCAG+AGG - chr4_4:11697230-11697249 Msa0669840:intron 40.0%
CTTTAAACAGTACCAGCAGA+GGG - chr4_4:11697231-11697250 Msa0669840:intron 40.0%
TGCACTAATTGGAGAAAGTG+AGG - chr4_4:11697258-11697277 Msa0669840:intron 40.0%
! AAGAGCATATTCACGAGATC+TGG + chr4_4:11697371-11697390 None:intergenic 40.0%
TTTCCTTAACCAATGCTCCA+GGG + chr4_4:11697885-11697904 None:intergenic 40.0%
! AAGGTCTGGAGTTAAAATCC+CGG - chr4_4:11698104-11698123 Msa0669840:intron 40.0%
!!! TATTTTTTTTGGTGGTGGCC+GGG + chr4_4:11698125-11698144 None:intergenic 40.0%
TGTTGAAAGCAGCGCATATT+AGG - chr4_4:11698480-11698499 Msa0669840:intron 40.0%
!! ATTTGGTGGTGGACTTTATG+TGG + chr4_4:11698523-11698542 None:intergenic 40.0%
! ATTGGGAGCAAGAAGAGTTT+TGG - chr4_4:11698698-11698717 Msa0669840:intron 40.0%
!! AAGAGTTTTGGTGACAGGAA+CGG - chr4_4:11698710-11698729 Msa0669840:intron 40.0%
TTGGCTATGCAAGGAAGAAA+TGG - chr4_4:11698759-11698778 Msa0669840:intron 40.0%
CAACTCAATGCTGAAATTGG+TGG - chr4_4:11698849-11698868 Msa0669840:intron 40.0%
GGAAATATACCGTATGCTTG+TGG + chr4_4:11698936-11698955 None:intergenic 40.0%
CCCTAGTCATGTTAGTTAGA+AGG - chr4_4:11699099-11699118 Msa0669840:CDS 40.0%
!! ATTATGATGAGGGGTGTTTG+TGG - chr4_4:11699310-11699329 Msa0669840:intron 40.0%
!! TGTGGGGGAAATTGACTTTT+GGG - chr4_4:11700066-11700085 Msa0669840:intron 40.0%
!! AATTGACTTTTGGGGACCAA+AGG - chr4_4:11700075-11700094 Msa0669840:intron 40.0%
!! ATTGACTTTTGGGGACCAAA+GGG - chr4_4:11700076-11700095 Msa0669840:intron 40.0%
CATATTAGGAATGGTCCCTT+TGG + chr4_4:11700094-11700113 None:intergenic 40.0%
ACATCAAAACATGCATGCTG+TGG - chr4_4:11700349-11700368 Msa0669840:intron 40.0%
CATAGTCCAACTCCATTGTA+TGG + chr4_4:11700382-11700401 None:intergenic 40.0%
! CTTCTAACTTGTGCCCAAAT+AGG - chr4_4:11700410-11700429 Msa0669840:intron 40.0%
! CTCTTTCTGATGGATGAAAG+GGG + chr4_4:11700456-11700475 None:intergenic 40.0%
! GCTCTTTCTGATGGATGAAA+GGG + chr4_4:11700457-11700476 None:intergenic 40.0%
!! AGTCTATTGGCTCTTTCTGA+TGG + chr4_4:11700466-11700485 None:intergenic 40.0%
! GTGTTGATCACCTTGAGCAT+TGG - chr4_4:11695730-11695749 Msa0669840:three_prime_UTR 45.0%
GGTGATTCTCTTGTGGACAA+TGG - chr4_4:11695790-11695809 Msa0669840:three_prime_UTR 45.0%
GATGGTGAGAGGTTACTTGT+TGG - chr4_4:11696164-11696183 Msa0669840:intron 45.0%
GTGCTAACTTTGCTTCTGCT+GGG - chr4_4:11696186-11696205 Msa0669840:intron 45.0%
AACTTTGCTTCTGCTGGGAT+TGG - chr4_4:11696191-11696210 Msa0669840:intron 45.0%
! CAGAGGGTTAGTGCACTAAT+TGG - chr4_4:11697247-11697266 Msa0669840:intron 45.0%
TTCCTTAACCAATGCTCCAG+GGG + chr4_4:11697884-11697903 None:intergenic 45.0%
GTTTCCTTAACCAATGCTCC+AGG + chr4_4:11697886-11697905 None:intergenic 45.0%
CCAACTGAGCTAAACTCACA+AGG + chr4_4:11698062-11698081 None:intergenic 45.0%
! CCTTGTGAGTTTAGCTCAGT+TGG - chr4_4:11698059-11698078 Msa0669840:intron 45.0%
!! GCAAGAAGAGTTTTGGTGAC+AGG - chr4_4:11698705-11698724 Msa0669840:intron 45.0%
!! AGAGTTTTGGTGACAGGAAC+GGG - chr4_4:11698711-11698730 Msa0669840:intron 45.0%
CAAGGAAGAAATGGAGAGTG+TGG - chr4_4:11698768-11698787 Msa0669840:intron 45.0%
CTAACTAACATGACTAGGGC+TGG + chr4_4:11699098-11699117 None:intergenic 45.0%
!! ATGTTTAGCTCTTGGTGGCT+AGG - chr4_4:11699191-11699210 Msa0669840:intron 45.0%
GGTGGCTAGGATCATTAACT+TGG - chr4_4:11699204-11699223 Msa0669840:intron 45.0%
TAAGATGGCCACTAGAGCAA+TGG - chr4_4:11699906-11699925 Msa0669840:intron 45.0%
!! GTGTGGGGGAAATTGACTTT+TGG - chr4_4:11700065-11700084 Msa0669840:intron 45.0%
!! GTGGGGGAAATTGACTTTTG+GGG - chr4_4:11700067-11700086 Msa0669840:intron 45.0%
AAACATGCATGCTGTGGTCA+AGG - chr4_4:11700355-11700374 Msa0669840:intron 45.0%
TGTGGTCAAGGACCATACAA+TGG - chr4_4:11700367-11700386 Msa0669840:intron 45.0%
CAAGGACCATACAATGGAGT+TGG - chr4_4:11700373-11700392 Msa0669840:intron 45.0%
TTTGGGCACAAGTTAGAAGC+TGG + chr4_4:11700409-11700428 None:intergenic 45.0%
! GGCTCTTTCTGATGGATGAA+AGG + chr4_4:11700458-11700477 None:intergenic 45.0%
!! AAAATAATAATAAATAAATG+AGG + chr4_4:11695946-11695965 None:intergenic 5.0%
!! AAAAAAAAAACAATATAATT+AGG - chr4_4:11696610-11696629 Msa0669840:intron 5.0%
!! AAAAAAAAACAATATAATTA+GGG - chr4_4:11696611-11696630 Msa0669840:intron 5.0%
TGAATCAGCACGAGCAGTAG+TGG + chr4_4:11695833-11695852 None:intergenic 50.0%
GCTTCTGGTCGTTTCTCCAA+TGG - chr4_4:11695886-11695905 Msa0669840:CDS 50.0%
AACCTCTCACCATCAAGCTC+TGG + chr4_4:11696158-11696177 None:intergenic 50.0%
GGTGCTAACTTTGCTTCTGC+TGG - chr4_4:11696185-11696204 Msa0669840:intron 50.0%
TTAGTGCACTAACCCTCTGC+TGG + chr4_4:11697246-11697265 None:intergenic 50.0%
TCACGAGATCTGGCTGAGTA+GGG + chr4_4:11697361-11697380 None:intergenic 50.0%
TTCACGAGATCTGGCTGAGT+AGG + chr4_4:11697362-11697381 None:intergenic 50.0%
TCTGCTGGCACACAACCTAA+TGG + chr4_4:11698738-11698757 None:intergenic 50.0%
AGGTTGTGTGCCAGCAGAAT+TGG - chr4_4:11698740-11698759 Msa0669840:intron 50.0%
CCTTGCATAGCCAATTCTGC+TGG + chr4_4:11698753-11698772 None:intergenic 50.0%
CCAGCAGAATTGGCTATGCA+AGG - chr4_4:11698750-11698769 Msa0669840:intron 50.0%
!! ATGAGGGGTGTTTGTGGAGA+TGG - chr4_4:11699316-11699335 Msa0669840:intron 50.0%
!! TGAGGGGTGTTTGTGGAGAT+GGG - chr4_4:11699317-11699336 Msa0669840:intron 50.0%
GTGGATAGGTTTGGGTCAAG+TGG + chr4_4:11699581-11699600 None:intergenic 50.0%
GCTAGTGGTCTACACTAACC+AGG + chr4_4:11699694-11699713 None:intergenic 50.0%
CATGTGTCAGTCGAGCTCAT+GGG - chr4_4:11699936-11699955 Msa0669840:intron 50.0%
!! CTCATGGGTTGGGACCTATA+TGG - chr4_4:11699951-11699970 Msa0669840:intron 50.0%
GCTTCATTCCTATAGGGTCG+TGG - chr4_4:11700612-11700631 Msa0669840:CDS 50.0%
GGTTACAACCACGACCCTAT+AGG + chr4_4:11700623-11700642 None:intergenic 50.0%
GTCAGGCATGTTGAGGCCAT+TGG + chr4_4:11695905-11695924 None:intergenic 55.0%
!! GTCCAGAGCTTGATGGTGAG+AGG - chr4_4:11696153-11696172 Msa0669840:intron 55.0%
GTTATGTTAACCGGTGCCCC+TGG - chr4_4:11697865-11697884 Msa0669840:intron 55.0%
!! TGCCCCTGGAGCATTGGTTA+AGG - chr4_4:11697879-11697898 Msa0669840:intron 55.0%
AATGTTAACCGGTGCCCCTG+AGG + chr4_4:11698014-11698033 None:intergenic 55.0%
GTGACAGGAACGGGACCATT+AGG - chr4_4:11698720-11698739 Msa0669840:intron 55.0%
GCACAAGGCCATTGCTCTAG+TGG + chr4_4:11699917-11699936 None:intergenic 55.0%
GCTCGACTGACACATGCACA+AGG + chr4_4:11699932-11699951 None:intergenic 55.0%
GCATGTGTCAGTCGAGCTCA+TGG - chr4_4:11699935-11699954 Msa0669840:intron 55.0%
TGTCAGTCGAGCTCATGGGT+TGG - chr4_4:11699940-11699959 Msa0669840:intron 55.0%
GTCAGTCGAGCTCATGGGTT+GGG - chr4_4:11699941-11699960 Msa0669840:intron 55.0%
CAGCACGAGCAGTAGTGGCT+AGG + chr4_4:11695828-11695847 None:intergenic 60.0%
! AACCAATGCTCCAGGGGCAC+CGG + chr4_4:11697878-11697897 None:intergenic 60.0%
CTTCCGTAACCGGTGCCTCA+GGG - chr4_4:11697996-11698015 Msa0669840:intron 60.0%
TTCCGTAACCGGTGCCTCAG+GGG - chr4_4:11697997-11698016 Msa0669840:intron 60.0%
AACCGGTGCCCCTGGAGCAT+TGG - chr4_4:11697873-11697892 Msa0669840:intron 65.0%
GCTTCCGTAACCGGTGCCTC+AGG - chr4_4:11697995-11698014 Msa0669840:intron 65.0%
!! TGCCCCTGAGGCACCGGTTA+CGG + chr4_4:11698002-11698021 None:intergenic 65.0%
! AACCGGTGCCTCAGGGGCAC+CGG - chr4_4:11698003-11698022 Msa0669840:intron 70.0%
AACCGGTGCCCCTGAGGCAC+CGG + chr4_4:11698008-11698027 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 11695639 11700758 11695639 ID=Msa0669840;Name=Msa0669840
chr4_4 mRNA 11695639 11700758 11695639 ID=Msa0669840-mRNA-1;Parent=Msa0669840;Name=Msa0669840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=43|1|1|1|1|1|5|185|370
chr4_4 exon 11695639 11696056 11695639 ID=Msa0669840-mRNA-1:exon:3559;Parent=Msa0669840-mRNA-1
chr4_4 exon 11697452 11697710 11697452 ID=Msa0669840-mRNA-1:exon:3558;Parent=Msa0669840-mRNA-1
chr4_4 exon 11698959 11699201 11698959 ID=Msa0669840-mRNA-1:exon:3557;Parent=Msa0669840-mRNA-1
chr4_4 exon 11700156 11700283 11700156 ID=Msa0669840-mRNA-1:exon:3556;Parent=Msa0669840-mRNA-1
chr4_4 exon 11700466 11700758 11700466 ID=Msa0669840-mRNA-1:exon:3555;Parent=Msa0669840-mRNA-1
chr4_4 five_prime_UTR 11700716 11700758 11700716 ID=Msa0669840-mRNA-1:five_prime_utr;Parent=Msa0669840-mRNA-1
chr4_4 CDS 11700466 11700715 11700466 ID=Msa0669840-mRNA-1:cds;Parent=Msa0669840-mRNA-1
chr4_4 CDS 11700156 11700283 11700156 ID=Msa0669840-mRNA-1:cds;Parent=Msa0669840-mRNA-1
chr4_4 CDS 11698959 11699201 11698959 ID=Msa0669840-mRNA-1:cds;Parent=Msa0669840-mRNA-1
chr4_4 CDS 11697452 11697710 11697452 ID=Msa0669840-mRNA-1:cds;Parent=Msa0669840-mRNA-1
chr4_4 CDS 11695824 11696056 11695824 ID=Msa0669840-mRNA-1:cds;Parent=Msa0669840-mRNA-1
chr4_4 three_prime_UTR 11695639 11695823 11695639 ID=Msa0669840-mRNA-1:three_prime_utr;Parent=Msa0669840-mRNA-1
Gene Sequence

>Msa0669840

ATGGAACAAAAAAACCAAATGAATATTATTCCTTCAATATTTCTTTGTGTGTTGATCACCTTGAGCATTGGTGTTCAACAAATTGAAGCAAGAGCATTTTTTGTGTTTGGTGATTCTCTTGTGGACAATGGAAATAATAACTTCCTAGCCACTACTGCTCGTGCTGATTCATATCCTTATGGAATTGATTCTCAAACTCATAGAGCTTCTGGTCGTTTCTCCAATGGCCTCAACATGCCTGACCTTATTAGTGAAAAAATTGGGTCAGAGCCTACATTACCATATTTGAGTCCAGAGCTTGATGGTGAGAGGTTACTTGTTGGTGCTAACTTTGCTTCTGCTGGGATTGGAATTCTCAATGACACTGGAGTTCAGTTTATTAATATAATCCGAATTACTGCCCAATTAGCATACTTTAAACAGTACCAGCAGAGGGTTAGTGCACTAATTGGAGAAAGTGAGGCACAAAAATTAGTGAACCAAGCATTAACCCTAATAACTTTAGGTGGGAATGATTTTGTGAACAACTATTATTTGGTTCCCTACTCAGCCAGATCTCGTGAATATGCTCTTCCTGATTATGTTGTCTTCCTCATTTCTGAGTATCGCAAAATTCTTATGAATCTATATGAATTGGGAGCAAGAAGAGTTTTGGTGACAGGAACGGGACCATTAGGTTGTGTGCCAGCAGAATTGGCTATGCAAGGAAGAAATGGAGAGTGTGGTGTTCCTCTTCAAACAGCTACTAACTTGTTCAATCCTCAACTTGTTCAATTGATTAATCAACTCAATGCTGAAATTGGTGGTCCTAATCATGTGTTCATCTATGCAAATGCATTTGCTATGCATTTGGATTTCGTTTCTAATCCACAAGCATACGGATTTGAAACATCAAAACATGCATGCTGTGGTCAAGGACCATACAATGGAGTTGGACTATGTACTCCAGCTTCTAACTTGTGCCCAAATAGGGATCTTTATGCATTTTGGGACCCCTTTCATCCATCAGAAAGAGCCAATAGACTAATCGTTGATAAATTTATGACTGGAACTACCGATTACATGCACCCATATAATCTTAGTACACTTATTGCTATGGATTCTAGGACCTAA

Protein sequence

>Msa0669840

MEQKNQMNIIPSIFLCVLITLSIGVQQIEARAFFVFGDSLVDNGNNNFLATTARADSYPYGIDSQTHRASGRFSNGLNMPDLISEKIGSEPTLPYLSPELDGERLLVGANFASAGIGILNDTGVQFINIIRITAQLAYFKQYQQRVSALIGESEAQKLVNQALTLITLGGNDFVNNYYLVPYSARSREYALPDYVVFLISEYRKILMNLYELGARRVLVTGTGPLGCVPAELAMQGRNGECGVPLQTATNLFNPQLVQLINQLNAEIGGPNHVFIYANAFAMHLDFVSNPQAYGFETSKHACCGQGPYNGVGLCTPASNLCPNRDLYAFWDPFHPSERANRLIVDKFMTGTTDYMHPYNLSTLIAMDSRT*