Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287280 | G7JBX1 | 83.607 | 122 | 20 | 0 | 2 | 123 | 37 | 158 | 1.58e-71 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0768290 | Msa1287280 | 0.816268 | 6.036366e-52 | -8.615850e-47 |
| Msa0768370 | Msa1287280 | 0.804819 | 1.798991e-49 | -8.615850e-47 |
| Msa1287260 | Msa1287280 | 0.975636 | 2.564118e-140 | -8.615850e-47 |
| Msa1287270 | Msa1287280 | 0.981417 | 1.543447e-152 | -8.615850e-47 |
| Msa1287280 | Msa1287300 | 0.969679 | 1.768475e-130 | -8.615850e-47 |
| Msa1287280 | Msa1366810 | 0.806028 | 1.003348e-49 | -8.615850e-47 |
| Msa0844490 | Msa1287280 | 0.813265 | 2.793100e-51 | -8.615850e-47 |
| Msa0966750 | Msa1287280 | 0.801113 | 1.049416e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287280 | MtrunA17_Chr3g0113941 | 83.607 | 122 | 20 | 0 | 2 | 123 | 37 | 158 | 3.04e-75 | 221 |
| Msa1287280 | MtrunA17_Chr5g0400511 | 90.909 | 110 | 7 | 1 | 2 | 111 | 25 | 131 | 6.21e-70 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287280 | AT5G05500.1 | 54.472 | 123 | 56 | 0 | 1 | 123 | 48 | 170 | 3.42e-46 | 149 |
Find 42 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTTCGTGAAGCCTGTT+TGG | 0.325880 | 8_3:+37216539 | Msa1287280:CDS |
| CTTACTTTGGCTGAAGGAAT+TGG | 0.336962 | 8_3:-37216385 | None:intergenic |
| GGAATTGGCTTGGCTCCATT+TGG | 0.360987 | 8_3:-37216370 | None:intergenic |
| TGTCAAACCTGTGACCATTC+TGG | 0.370477 | 8_3:+37216337 | Msa1287280:CDS |
| TCCCTTGGCTTTCCATCCTC+CGG | 0.372532 | 8_3:+37216689 | Msa1287280:CDS |
| AATGTTAATTACGGTTTGAA+TGG | 0.379533 | 8_3:+37216592 | Msa1287280:CDS |
| TGATGGAGGGTAATTCATAA+TGG | 0.398616 | 8_3:-37216744 | None:intergenic |
| CTTGGCTCCATTTGGAGACC+AGG | 0.399766 | 8_3:-37216362 | None:intergenic |
| ATAGTCAATGAATCTCAAAA+TGG | 0.408240 | 8_3:-37216768 | None:intergenic |
| ATGAATCTCAAAATGGTTGA+TGG | 0.427371 | 8_3:-37216761 | None:intergenic |
| TACCTCTATGCACAACTAGA+AGG | 0.432988 | 8_3:+37216475 | Msa1287280:CDS |
| ATACAGCTGGTCCGGTCCCT+TGG | 0.446078 | 8_3:+37216674 | Msa1287280:CDS |
| CAGTGAGTCTTTGAGCAATC+CGG | 0.449568 | 8_3:-37216708 | None:intergenic |
| CTTTCAAGAGGAGACCAAAC+AGG | 0.457911 | 8_3:-37216553 | None:intergenic |
| TTTGGCTGAAGGAATTGGCT+TGG | 0.461478 | 8_3:-37216380 | None:intergenic |
| GTTCTCGCGAATGTTAATTA+CGG | 0.468294 | 8_3:+37216583 | Msa1287280:CDS |
| TTTGCAGGTGATGCTTACTT+TGG | 0.477583 | 8_3:-37216398 | None:intergenic |
| GTGGATGATCTGTTATATAA+TGG | 0.479481 | 8_3:-37216510 | None:intergenic |
| TCTGGAACCTGGTCTCCAAA+TGG | 0.493284 | 8_3:+37216355 | Msa1287280:CDS |
| AGGATGGAAAGCCAAGGGAC+CGG | 0.510219 | 8_3:-37216685 | None:intergenic |
| CCTGTGACCATTCTGGAACC+TGG | 0.530238 | 8_3:+37216344 | Msa1287280:CDS |
| ATCCTTCTAGTTGTGCATAG+AGG | 0.530865 | 8_3:-37216477 | None:intergenic |
| TGTTATATATACAGCTGGTC+CGG | 0.538774 | 8_3:+37216666 | Msa1287280:CDS |
| GGGTAATTCATAATGGTTTG+AGG | 0.542497 | 8_3:-37216737 | None:intergenic |
| ACAACAGATTGCGCGGAAGT+AGG | 0.545277 | 8_3:+37216635 | Msa1287280:CDS |
| AGGTCATGTTAGTTACTACA+AGG | 0.552650 | 8_3:+37216429 | Msa1287280:CDS |
| ATTGCGCGGAAGTAGGTATG+AGG | 0.556644 | 8_3:+37216642 | Msa1287280:CDS |
| GAGGCTGTTATATATACAGC+TGG | 0.561693 | 8_3:+37216661 | Msa1287280:CDS |
| TCTTTGAGCAATCCGGAGGA+TGG | 0.570627 | 8_3:-37216701 | None:intergenic |
| TTGGAGACCAGGTTCCAGAA+TGG | 0.573302 | 8_3:-37216351 | None:intergenic |
| AATCTCAAAATGGTTGATGG+AGG | 0.583391 | 8_3:-37216758 | None:intergenic |
| CCAGGTTCCAGAATGGTCAC+AGG | 0.585780 | 8_3:-37216344 | None:intergenic |
| ATCTCAAAATGGTTGATGGA+GGG | 0.596026 | 8_3:-37216757 | None:intergenic |
| GTGATGCTTACTTTGGCTGA+AGG | 0.603085 | 8_3:-37216391 | None:intergenic |
| ATCCGGAGGATGGAAAGCCA+AGG | 0.617016 | 8_3:-37216691 | None:intergenic |
| AGAACGCTGCAACTTTCAAG+AGG | 0.622703 | 8_3:-37216565 | None:intergenic |
| CTGTTGTTCTCATAACGAAG+TGG | 0.627481 | 8_3:-37216619 | None:intergenic |
| TCCGGAGGATGGAAAGCCAA+GGG | 0.642508 | 8_3:-37216690 | None:intergenic |
| TTCACGAAGCAAGAGTGAAG+TGG | 0.649891 | 8_3:-37216529 | None:intergenic |
| TATGAGAACAACAGATTGCG+CGG | 0.657146 | 8_3:+37216628 | Msa1287280:CDS |
| ATCACCTGCAAAACACACAA+AGG | 0.676940 | 8_3:+37216409 | Msa1287280:CDS |
| TGAGTCTTTGAGCAATCCGG+AGG | 0.686001 | 8_3:-37216705 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTAATTTTTGATGATC+AGG | + | chr8_3:37216219-37216238 | Msa1287280:intron | 20.0% |
| !!! | TCTTTAATTTTTGATGATCA+GGG | + | chr8_3:37216220-37216239 | Msa1287280:intron | 20.0% |
| !!! | TTCTTTAATTTTTGATGATC+AGG | + | chr8_3:37216219-37216238 | Msa1287280:intron | 20.0% |
| !!! | TCTTTAATTTTTGATGATCA+GGG | + | chr8_3:37216220-37216239 | Msa1287280:intron | 20.0% |
| ! | ATTCTGCTTAGAATTAGAAT+TGG | + | chr8_3:37215452-37215471 | Msa1287280:intron | 25.0% |
| ! | AGAATATCTTGTACACATTT+GGG | - | chr8_3:37215545-37215564 | None:intergenic | 25.0% |
| !!! | ATAGCTACTTTTTCTGAATT+TGG | + | chr8_3:37215702-37215721 | Msa1287280:intron | 25.0% |
| !!! | CTCTTCATTGATAGTTTTTT+GGG | + | chr8_3:37215851-37215870 | Msa1287280:intron | 25.0% |
| ! | TTTATGCAATAAGTGAAGAT+TGG | + | chr8_3:37216066-37216085 | Msa1287280:intron | 25.0% |
| ! | AAAATTAGTTACTGTCAATG+TGG | - | chr8_3:37216192-37216211 | None:intergenic | 25.0% |
| !!! | CTTTAATTTTTGATGATCAG+GGG | + | chr8_3:37216221-37216240 | Msa1287280:intron | 25.0% |
| !! | ATTTTCTTCTCTGTTGTATA+TGG | - | chr8_3:37216289-37216308 | None:intergenic | 25.0% |
| ! | AATGTTAATTACGGTTTGAA+TGG | + | chr8_3:37216592-37216611 | Msa1287280:CDS | 25.0% |
| ! | ATTCTGCTTAGAATTAGAAT+TGG | + | chr8_3:37215452-37215471 | Msa1287280:intron | 25.0% |
| ! | AGAATATCTTGTACACATTT+GGG | - | chr8_3:37215545-37215564 | None:intergenic | 25.0% |
| !!! | ATAGCTACTTTTTCTGAATT+TGG | + | chr8_3:37215702-37215721 | Msa1287280:intron | 25.0% |
| !!! | CTCTTCATTGATAGTTTTTT+GGG | + | chr8_3:37215851-37215870 | Msa1287280:intron | 25.0% |
| ! | TTTATGCAATAAGTGAAGAT+TGG | + | chr8_3:37216066-37216085 | Msa1287280:intron | 25.0% |
| ! | AAAATTAGTTACTGTCAATG+TGG | - | chr8_3:37216192-37216211 | None:intergenic | 25.0% |
| !!! | CTTTAATTTTTGATGATCAG+GGG | + | chr8_3:37216221-37216240 | Msa1287280:intron | 25.0% |
| !! | ATTTTCTTCTCTGTTGTATA+TGG | - | chr8_3:37216289-37216308 | None:intergenic | 25.0% |
| ! | AATGTTAATTACGGTTTGAA+TGG | + | chr8_3:37216592-37216611 | Msa1287280:CDS | 25.0% |
| GAGAATATCTTGTACACATT+TGG | - | chr8_3:37215546-37215565 | None:intergenic | 30.0% | |
| CTATATGCTCATGCTATATA+AGG | - | chr8_3:37215604-37215623 | None:intergenic | 30.0% | |
| ! | TGAAGTCAATTGATAGCTAA+TGG | + | chr8_3:37215672-37215691 | Msa1287280:intron | 30.0% |
| TAAACCTGTTGAAATTTCTG+AGG | - | chr8_3:37215826-37215845 | None:intergenic | 30.0% | |
| !!! | GCTCTTCATTGATAGTTTTT+TGG | + | chr8_3:37215850-37215869 | Msa1287280:intron | 30.0% |
| ! | ATAGAGTAGATGAAGTTGAT+TGG | + | chr8_3:37215896-37215915 | Msa1287280:intron | 30.0% |
| ! | TAGAGTAGATGAAGTTGATT+GGG | + | chr8_3:37215897-37215916 | Msa1287280:intron | 30.0% |
| !!! | ACGAATTTTTGTTGTTCTCA+AGG | + | chr8_3:37215955-37215974 | Msa1287280:intron | 30.0% |
| CTCTATTAACTTTGTACATG+CGG | + | chr8_3:37216095-37216114 | Msa1287280:intron | 30.0% | |
| CTCTTAATAAATTTCGCCTA+AGG | - | chr8_3:37216144-37216163 | None:intergenic | 30.0% | |
| AACAGAGAAGAAAATAGATG+TGG | + | chr8_3:37216294-37216313 | Msa1287280:intron | 30.0% | |
| !! | GTTTTTCAGACAGACAAAAA+TGG | + | chr8_3:37216451-37216470 | Msa1287280:CDS | 30.0% |
| GTGGATGATCTGTTATATAA+TGG | - | chr8_3:37216513-37216532 | None:intergenic | 30.0% | |
| ATGAATCTCAAAATGGTTGA+TGG | - | chr8_3:37216764-37216783 | None:intergenic | 30.0% | |
| GAGAATATCTTGTACACATT+TGG | - | chr8_3:37215546-37215565 | None:intergenic | 30.0% | |
| CTATATGCTCATGCTATATA+AGG | - | chr8_3:37215604-37215623 | None:intergenic | 30.0% | |
| ! | TGAAGTCAATTGATAGCTAA+TGG | + | chr8_3:37215672-37215691 | Msa1287280:intron | 30.0% |
| TAAACCTGTTGAAATTTCTG+AGG | - | chr8_3:37215826-37215845 | None:intergenic | 30.0% | |
| !!! | GCTCTTCATTGATAGTTTTT+TGG | + | chr8_3:37215850-37215869 | Msa1287280:intron | 30.0% |
| ! | ATAGAGTAGATGAAGTTGAT+TGG | + | chr8_3:37215896-37215915 | Msa1287280:intron | 30.0% |
| ! | TAGAGTAGATGAAGTTGATT+GGG | + | chr8_3:37215897-37215916 | Msa1287280:intron | 30.0% |
| !!! | ACGAATTTTTGTTGTTCTCA+AGG | + | chr8_3:37215955-37215974 | Msa1287280:intron | 30.0% |
| CTCTATTAACTTTGTACATG+CGG | + | chr8_3:37216095-37216114 | Msa1287280:intron | 30.0% | |
| CTCTTAATAAATTTCGCCTA+AGG | - | chr8_3:37216144-37216163 | None:intergenic | 30.0% | |
| AACAGAGAAGAAAATAGATG+TGG | + | chr8_3:37216294-37216313 | Msa1287280:intron | 30.0% | |
| !! | GTTTTTCAGACAGACAAAAA+TGG | + | chr8_3:37216451-37216470 | Msa1287280:CDS | 30.0% |
| GTGGATGATCTGTTATATAA+TGG | - | chr8_3:37216513-37216532 | None:intergenic | 30.0% | |
| ATGAATCTCAAAATGGTTGA+TGG | - | chr8_3:37216764-37216783 | None:intergenic | 30.0% | |
| ! | GCTATCAATTGACTTCAAGT+AGG | - | chr8_3:37215669-37215688 | None:intergenic | 35.0% |
| AAGTCCTCAGAAATTTCAAC+AGG | + | chr8_3:37215819-37215838 | Msa1287280:intron | 35.0% | |
| !!! | GTTTTTTGGGATGTGTACTT+TGG | + | chr8_3:37215864-37215883 | Msa1287280:intron | 35.0% |
| !! | TGATGTGTCTAAGACTTTTG+AGG | + | chr8_3:37216118-37216137 | Msa1287280:intron | 35.0% |
| GAAGAAAATAGATGTGGTTG+TGG | + | chr8_3:37216300-37216319 | Msa1287280:intron | 35.0% | |
| AGGTCATGTTAGTTACTACA+AGG | + | chr8_3:37216429-37216448 | Msa1287280:CDS | 35.0% | |
| GTTCTCGCGAATGTTAATTA+CGG | + | chr8_3:37216583-37216602 | Msa1287280:CDS | 35.0% | |
| TGTTATATATACAGCTGGTC+CGG | + | chr8_3:37216666-37216685 | Msa1287280:CDS | 35.0% | |
| GGGTAATTCATAATGGTTTG+AGG | - | chr8_3:37216740-37216759 | None:intergenic | 35.0% | |
| TGATGGAGGGTAATTCATAA+TGG | - | chr8_3:37216747-37216766 | None:intergenic | 35.0% | |
| !! | ATCTCAAAATGGTTGATGGA+GGG | - | chr8_3:37216760-37216779 | None:intergenic | 35.0% |
| !! | AATCTCAAAATGGTTGATGG+AGG | - | chr8_3:37216761-37216780 | None:intergenic | 35.0% |
| ! | GCTATCAATTGACTTCAAGT+AGG | - | chr8_3:37215669-37215688 | None:intergenic | 35.0% |
| AAGTCCTCAGAAATTTCAAC+AGG | + | chr8_3:37215819-37215838 | Msa1287280:intron | 35.0% | |
| !!! | GTTTTTTGGGATGTGTACTT+TGG | + | chr8_3:37215864-37215883 | Msa1287280:intron | 35.0% |
| !! | TGATGTGTCTAAGACTTTTG+AGG | + | chr8_3:37216118-37216137 | Msa1287280:intron | 35.0% |
| GAAGAAAATAGATGTGGTTG+TGG | + | chr8_3:37216300-37216319 | Msa1287280:intron | 35.0% | |
| AGGTCATGTTAGTTACTACA+AGG | + | chr8_3:37216429-37216448 | Msa1287280:CDS | 35.0% | |
| GTTCTCGCGAATGTTAATTA+CGG | + | chr8_3:37216583-37216602 | Msa1287280:CDS | 35.0% | |
| TGTTATATATACAGCTGGTC+CGG | + | chr8_3:37216666-37216685 | Msa1287280:CDS | 35.0% | |
| GGGTAATTCATAATGGTTTG+AGG | - | chr8_3:37216740-37216759 | None:intergenic | 35.0% | |
| TGATGGAGGGTAATTCATAA+TGG | - | chr8_3:37216747-37216766 | None:intergenic | 35.0% | |
| !! | ATCTCAAAATGGTTGATGGA+GGG | - | chr8_3:37216760-37216779 | None:intergenic | 35.0% |
| !! | AATCTCAAAATGGTTGATGG+AGG | - | chr8_3:37216761-37216780 | None:intergenic | 35.0% |
| ACACTTTGTTCCTACCCTAA+TGG | + | chr8_3:37215485-37215504 | Msa1287280:intron | 40.0% | |
| CACTTTGTTCCTACCCTAAT+GGG | + | chr8_3:37215486-37215505 | Msa1287280:intron | 40.0% | |
| ATGAGCATATAGACCAGTAG+TGG | + | chr8_3:37215612-37215631 | Msa1287280:intron | 40.0% | |
| !!! | TCTAAGACTTTTGAGGCCTT+AGG | + | chr8_3:37216125-37216144 | Msa1287280:intron | 40.0% |
| CTTACTTTGGCTGAAGGAAT+TGG | - | chr8_3:37216388-37216407 | None:intergenic | 40.0% | |
| TTTGCAGGTGATGCTTACTT+TGG | - | chr8_3:37216401-37216420 | None:intergenic | 40.0% | |
| ATCACCTGCAAAACACACAA+AGG | + | chr8_3:37216409-37216428 | Msa1287280:CDS | 40.0% | |
| ! | ATGACCTTTGTGTGTTTTGC+AGG | - | chr8_3:37216416-37216435 | None:intergenic | 40.0% |
| TACCTCTATGCACAACTAGA+AGG | + | chr8_3:37216475-37216494 | Msa1287280:CDS | 40.0% | |
| ! | ATCCTTCTAGTTGTGCATAG+AGG | - | chr8_3:37216480-37216499 | None:intergenic | 40.0% |
| CTGTTGTTCTCATAACGAAG+TGG | - | chr8_3:37216622-37216641 | None:intergenic | 40.0% | |
| TATGAGAACAACAGATTGCG+CGG | + | chr8_3:37216628-37216647 | Msa1287280:CDS | 40.0% | |
| GAGGCTGTTATATATACAGC+TGG | + | chr8_3:37216661-37216680 | Msa1287280:CDS | 40.0% | |
| ACACTTTGTTCCTACCCTAA+TGG | + | chr8_3:37215485-37215504 | Msa1287280:intron | 40.0% | |
| CACTTTGTTCCTACCCTAAT+GGG | + | chr8_3:37215486-37215505 | Msa1287280:intron | 40.0% | |
| ATGAGCATATAGACCAGTAG+TGG | + | chr8_3:37215612-37215631 | Msa1287280:intron | 40.0% | |
| !!! | TCTAAGACTTTTGAGGCCTT+AGG | + | chr8_3:37216125-37216144 | Msa1287280:intron | 40.0% |
| CTTACTTTGGCTGAAGGAAT+TGG | - | chr8_3:37216388-37216407 | None:intergenic | 40.0% | |
| TTTGCAGGTGATGCTTACTT+TGG | - | chr8_3:37216401-37216420 | None:intergenic | 40.0% | |
| ATCACCTGCAAAACACACAA+AGG | + | chr8_3:37216409-37216428 | Msa1287280:CDS | 40.0% | |
| ! | ATGACCTTTGTGTGTTTTGC+AGG | - | chr8_3:37216416-37216435 | None:intergenic | 40.0% |
| TACCTCTATGCACAACTAGA+AGG | + | chr8_3:37216475-37216494 | Msa1287280:CDS | 40.0% | |
| ! | ATCCTTCTAGTTGTGCATAG+AGG | - | chr8_3:37216480-37216499 | None:intergenic | 40.0% |
| CTGTTGTTCTCATAACGAAG+TGG | - | chr8_3:37216622-37216641 | None:intergenic | 40.0% | |
| TATGAGAACAACAGATTGCG+CGG | + | chr8_3:37216628-37216647 | Msa1287280:CDS | 40.0% | |
| GAGGCTGTTATATATACAGC+TGG | + | chr8_3:37216661-37216680 | Msa1287280:CDS | 40.0% | |
| ! | TTGTTCCTACCCTAATGGGT+TGG | + | chr8_3:37215490-37215509 | Msa1287280:intron | 45.0% |
| TTAAGCCAACCCATTAGGGT+AGG | - | chr8_3:37215498-37215517 | None:intergenic | 45.0% | |
| !! | ACCCTAATGGGTTGGCTTAA+TGG | + | chr8_3:37215498-37215517 | Msa1287280:intron | 45.0% |
| GCCATTAAGCCAACCCATTA+GGG | - | chr8_3:37215502-37215521 | None:intergenic | 45.0% | |
| TGCCATTAAGCCAACCCATT+AGG | - | chr8_3:37215503-37215522 | None:intergenic | 45.0% | |
| TGGCTTAATGGCACTACACT+AGG | + | chr8_3:37215510-37215529 | Msa1287280:intron | 45.0% | |
| AGCATATAGACCAGTAGTGG+TGG | + | chr8_3:37215615-37215634 | Msa1287280:intron | 45.0% | |
| ATGCTACATACCACCACTAC+TGG | - | chr8_3:37215628-37215647 | None:intergenic | 45.0% | |
| TGTCAAACCTGTGACCATTC+TGG | + | chr8_3:37216337-37216356 | Msa1287280:CDS | 45.0% | |
| TTTGGCTGAAGGAATTGGCT+TGG | - | chr8_3:37216383-37216402 | None:intergenic | 45.0% | |
| GTGATGCTTACTTTGGCTGA+AGG | - | chr8_3:37216394-37216413 | None:intergenic | 45.0% | |
| TTCACGAAGCAAGAGTGAAG+TGG | - | chr8_3:37216532-37216551 | None:intergenic | 45.0% | |
| CTTTCAAGAGGAGACCAAAC+AGG | - | chr8_3:37216556-37216575 | None:intergenic | 45.0% | |
| AGAACGCTGCAACTTTCAAG+AGG | - | chr8_3:37216568-37216587 | None:intergenic | 45.0% | |
| CAGTGAGTCTTTGAGCAATC+CGG | - | chr8_3:37216711-37216730 | None:intergenic | 45.0% | |
| ! | TTGTTCCTACCCTAATGGGT+TGG | + | chr8_3:37215490-37215509 | Msa1287280:intron | 45.0% |
| TTAAGCCAACCCATTAGGGT+AGG | - | chr8_3:37215498-37215517 | None:intergenic | 45.0% | |
| !! | ACCCTAATGGGTTGGCTTAA+TGG | + | chr8_3:37215498-37215517 | Msa1287280:intron | 45.0% |
| GCCATTAAGCCAACCCATTA+GGG | - | chr8_3:37215502-37215521 | None:intergenic | 45.0% | |
| TGCCATTAAGCCAACCCATT+AGG | - | chr8_3:37215503-37215522 | None:intergenic | 45.0% | |
| TGGCTTAATGGCACTACACT+AGG | + | chr8_3:37215510-37215529 | Msa1287280:intron | 45.0% | |
| AGCATATAGACCAGTAGTGG+TGG | + | chr8_3:37215615-37215634 | Msa1287280:intron | 45.0% | |
| ATGCTACATACCACCACTAC+TGG | - | chr8_3:37215628-37215647 | None:intergenic | 45.0% | |
| TGTCAAACCTGTGACCATTC+TGG | + | chr8_3:37216337-37216356 | Msa1287280:CDS | 45.0% | |
| TTTGGCTGAAGGAATTGGCT+TGG | - | chr8_3:37216383-37216402 | None:intergenic | 45.0% | |
| GTGATGCTTACTTTGGCTGA+AGG | - | chr8_3:37216394-37216413 | None:intergenic | 45.0% | |
| TTCACGAAGCAAGAGTGAAG+TGG | - | chr8_3:37216532-37216551 | None:intergenic | 45.0% | |
| CTTTCAAGAGGAGACCAAAC+AGG | - | chr8_3:37216556-37216575 | None:intergenic | 45.0% | |
| AGAACGCTGCAACTTTCAAG+AGG | - | chr8_3:37216568-37216587 | None:intergenic | 45.0% | |
| CAGTGAGTCTTTGAGCAATC+CGG | - | chr8_3:37216711-37216730 | None:intergenic | 45.0% | |
| TTGGAGACCAGGTTCCAGAA+TGG | - | chr8_3:37216354-37216373 | None:intergenic | 50.0% | |
| ! | TCTGGAACCTGGTCTCCAAA+TGG | + | chr8_3:37216355-37216374 | Msa1287280:CDS | 50.0% |
| !! | GGAATTGGCTTGGCTCCATT+TGG | - | chr8_3:37216373-37216392 | None:intergenic | 50.0% |
| CTTGCTTCGTGAAGCCTGTT+TGG | + | chr8_3:37216539-37216558 | Msa1287280:CDS | 50.0% | |
| ACAACAGATTGCGCGGAAGT+AGG | + | chr8_3:37216635-37216654 | Msa1287280:CDS | 50.0% | |
| ATTGCGCGGAAGTAGGTATG+AGG | + | chr8_3:37216642-37216661 | Msa1287280:CDS | 50.0% | |
| TCTTTGAGCAATCCGGAGGA+TGG | - | chr8_3:37216704-37216723 | None:intergenic | 50.0% | |
| TGAGTCTTTGAGCAATCCGG+AGG | - | chr8_3:37216708-37216727 | None:intergenic | 50.0% | |
| TTGGAGACCAGGTTCCAGAA+TGG | - | chr8_3:37216354-37216373 | None:intergenic | 50.0% | |
| ! | TCTGGAACCTGGTCTCCAAA+TGG | + | chr8_3:37216355-37216374 | Msa1287280:CDS | 50.0% |
| !! | GGAATTGGCTTGGCTCCATT+TGG | - | chr8_3:37216373-37216392 | None:intergenic | 50.0% |
| CTTGCTTCGTGAAGCCTGTT+TGG | + | chr8_3:37216539-37216558 | Msa1287280:CDS | 50.0% | |
| ACAACAGATTGCGCGGAAGT+AGG | + | chr8_3:37216635-37216654 | Msa1287280:CDS | 50.0% | |
| ATTGCGCGGAAGTAGGTATG+AGG | + | chr8_3:37216642-37216661 | Msa1287280:CDS | 50.0% | |
| TCTTTGAGCAATCCGGAGGA+TGG | - | chr8_3:37216704-37216723 | None:intergenic | 50.0% | |
| TGAGTCTTTGAGCAATCCGG+AGG | - | chr8_3:37216708-37216727 | None:intergenic | 50.0% | |
| CCAGGTTCCAGAATGGTCAC+AGG | - | chr8_3:37216347-37216366 | None:intergenic | 55.0% | |
| !! | CCTGTGACCATTCTGGAACC+TGG | + | chr8_3:37216344-37216363 | Msa1287280:CDS | 55.0% |
| CTTGGCTCCATTTGGAGACC+AGG | - | chr8_3:37216365-37216384 | None:intergenic | 55.0% | |
| AGGATGGAAAGCCAAGGGAC+CGG | - | chr8_3:37216688-37216707 | None:intergenic | 55.0% | |
| ! | TCCCTTGGCTTTCCATCCTC+CGG | + | chr8_3:37216689-37216708 | Msa1287280:CDS | 55.0% |
| TCCGGAGGATGGAAAGCCAA+GGG | - | chr8_3:37216693-37216712 | None:intergenic | 55.0% | |
| ATCCGGAGGATGGAAAGCCA+AGG | - | chr8_3:37216694-37216713 | None:intergenic | 55.0% | |
| CCAGGTTCCAGAATGGTCAC+AGG | - | chr8_3:37216347-37216366 | None:intergenic | 55.0% | |
| !! | CCTGTGACCATTCTGGAACC+TGG | + | chr8_3:37216344-37216363 | Msa1287280:CDS | 55.0% |
| CTTGGCTCCATTTGGAGACC+AGG | - | chr8_3:37216365-37216384 | None:intergenic | 55.0% | |
| AGGATGGAAAGCCAAGGGAC+CGG | - | chr8_3:37216688-37216707 | None:intergenic | 55.0% | |
| ! | TCCCTTGGCTTTCCATCCTC+CGG | + | chr8_3:37216689-37216708 | Msa1287280:CDS | 55.0% |
| TCCGGAGGATGGAAAGCCAA+GGG | - | chr8_3:37216693-37216712 | None:intergenic | 55.0% | |
| ATCCGGAGGATGGAAAGCCA+AGG | - | chr8_3:37216694-37216713 | None:intergenic | 55.0% | |
| ATACAGCTGGTCCGGTCCCT+TGG | + | chr8_3:37216674-37216693 | Msa1287280:CDS | 60.0% | |
| ATACAGCTGGTCCGGTCCCT+TGG | + | chr8_3:37216674-37216693 | Msa1287280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 37215317 | 37216786 | 37215317 | ID=Msa1287280;Name=Msa1287280 |
| chr8_3 | mRNA | 37215317 | 37216786 | 37215317 | ID=Msa1287280-mRNA-1;Parent=Msa1287280;Name=Msa1287280-mRNA-1;_AED=0.50;_eAED=0.54;_QI=0|0|0|0.5|0|0|2|0|152 |
| chr8_3 | exon | 37215317 | 37215320 | 37215317 | ID=Msa1287280-mRNA-1:exon:10780;Parent=Msa1287280-mRNA-1 |
| chr8_3 | exon | 37216332 | 37216786 | 37216332 | ID=Msa1287280-mRNA-1:exon:10781;Parent=Msa1287280-mRNA-1 |
| chr8_3 | CDS | 37215317 | 37215320 | 37215317 | ID=Msa1287280-mRNA-1:cds;Parent=Msa1287280-mRNA-1 |
| chr8_3 | CDS | 37216332 | 37216786 | 37216332 | ID=Msa1287280-mRNA-1:cds;Parent=Msa1287280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
