Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287260 | XP_003600960.1 | 83.607 | 122 | 20 | 0 | 2 | 123 | 37 | 158 | 3.31e-71 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287260 | G7JBX1 | 83.607 | 122 | 20 | 0 | 2 | 123 | 37 | 158 | 1.58e-71 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0701010 | Msa1287260 | 0.804090 | 2.552333e-49 | -8.615850e-47 |
| Msa0768290 | Msa1287260 | 0.826798 | 2.226640e-54 | -8.615850e-47 |
| Msa0768370 | Msa1287260 | 0.824843 | 6.481324e-54 | -8.615850e-47 |
| Msa1287260 | Msa1287270 | 0.979068 | 3.662824e-147 | -8.615850e-47 |
| Msa1287260 | Msa1287280 | 0.975636 | 2.564118e-140 | -8.615850e-47 |
| Msa1287260 | Msa1287300 | 0.960928 | 4.089647e-119 | -8.615850e-47 |
| Msa1287260 | Msa1366810 | 0.832369 | 9.830737e-56 | -8.615850e-47 |
| Msa1121490 | Msa1287260 | 0.812881 | 3.391879e-51 | -8.615850e-47 |
| Msa0844490 | Msa1287260 | 0.822248 | 2.621475e-53 | -8.615850e-47 |
| Msa0966750 | Msa1287260 | 0.815282 | 1.001222e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287260 | MtrunA17_Chr3g0113941 | 83.607 | 122 | 20 | 0 | 2 | 123 | 37 | 158 | 3.04e-75 | 221 |
| Msa1287260 | MtrunA17_Chr5g0400511 | 90.909 | 110 | 7 | 1 | 2 | 111 | 25 | 131 | 6.21e-70 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287260 | AT5G05500.1 | 54.472 | 123 | 56 | 0 | 1 | 123 | 48 | 170 | 3.42e-46 | 149 |
Find 42 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTTCGTGAAGCCTGTT+TGG | 0.325880 | 8_3:+37213327 | Msa1287260:CDS |
| CTTACTTTGGCTGAAGGAAT+TGG | 0.336962 | 8_3:-37213173 | None:intergenic |
| GGAATTGGCTTGGCTCCATT+TGG | 0.360987 | 8_3:-37213158 | None:intergenic |
| TGTCAAACCTGTGACCATTC+TGG | 0.370477 | 8_3:+37213125 | Msa1287260:CDS |
| TCCCTTGGCTTTCCATCCTC+CGG | 0.372532 | 8_3:+37213477 | Msa1287260:CDS |
| AATGTTAATTACGGTTTGAA+TGG | 0.379533 | 8_3:+37213380 | Msa1287260:CDS |
| TGATGGAGGGTAATTCATAA+TGG | 0.398616 | 8_3:-37213532 | None:intergenic |
| CTTGGCTCCATTTGGAGACC+AGG | 0.399766 | 8_3:-37213150 | None:intergenic |
| ATAGTCAATGAATCTCAAAA+TGG | 0.408240 | 8_3:-37213556 | None:intergenic |
| ATGAATCTCAAAATGGTTGA+TGG | 0.427371 | 8_3:-37213549 | None:intergenic |
| TACCTCTATGCACAACTAGA+AGG | 0.432988 | 8_3:+37213263 | Msa1287260:CDS |
| ATACAGCTGGTCCGGTCCCT+TGG | 0.446078 | 8_3:+37213462 | Msa1287260:CDS |
| CAGTGAGTCTTTGAGCAATC+CGG | 0.449568 | 8_3:-37213496 | None:intergenic |
| CTTTCAAGAGGAGACCAAAC+AGG | 0.457911 | 8_3:-37213341 | None:intergenic |
| TTTGGCTGAAGGAATTGGCT+TGG | 0.461478 | 8_3:-37213168 | None:intergenic |
| GTTCTCGCGAATGTTAATTA+CGG | 0.468294 | 8_3:+37213371 | Msa1287260:CDS |
| TTTGCAGGTGATGCTTACTT+TGG | 0.477583 | 8_3:-37213186 | None:intergenic |
| GTGGATGATCTGTTATATAA+TGG | 0.479481 | 8_3:-37213298 | None:intergenic |
| TCTGGAACCTGGTCTCCAAA+TGG | 0.493284 | 8_3:+37213143 | Msa1287260:CDS |
| AGGATGGAAAGCCAAGGGAC+CGG | 0.510219 | 8_3:-37213473 | None:intergenic |
| CCTGTGACCATTCTGGAACC+TGG | 0.530238 | 8_3:+37213132 | Msa1287260:CDS |
| ATCCTTCTAGTTGTGCATAG+AGG | 0.530865 | 8_3:-37213265 | None:intergenic |
| TGTTATATATACAGCTGGTC+CGG | 0.538774 | 8_3:+37213454 | Msa1287260:CDS |
| GGGTAATTCATAATGGTTTG+AGG | 0.542497 | 8_3:-37213525 | None:intergenic |
| ACAACAGATTGCGCGGAAGT+AGG | 0.545277 | 8_3:+37213423 | Msa1287260:CDS |
| AGGTCATGTTAGTTACTACA+AGG | 0.552650 | 8_3:+37213217 | Msa1287260:CDS |
| ATTGCGCGGAAGTAGGTATG+AGG | 0.556644 | 8_3:+37213430 | Msa1287260:CDS |
| GAGGCTGTTATATATACAGC+TGG | 0.561693 | 8_3:+37213449 | Msa1287260:CDS |
| TCTTTGAGCAATCCGGAGGA+TGG | 0.570627 | 8_3:-37213489 | None:intergenic |
| TTGGAGACCAGGTTCCAGAA+TGG | 0.573302 | 8_3:-37213139 | None:intergenic |
| AATCTCAAAATGGTTGATGG+AGG | 0.583391 | 8_3:-37213546 | None:intergenic |
| CCAGGTTCCAGAATGGTCAC+AGG | 0.585780 | 8_3:-37213132 | None:intergenic |
| ATCTCAAAATGGTTGATGGA+GGG | 0.596026 | 8_3:-37213545 | None:intergenic |
| GTGATGCTTACTTTGGCTGA+AGG | 0.603085 | 8_3:-37213179 | None:intergenic |
| ATCCGGAGGATGGAAAGCCA+AGG | 0.617016 | 8_3:-37213479 | None:intergenic |
| AGAACGCTGCAACTTTCAAG+AGG | 0.622703 | 8_3:-37213353 | None:intergenic |
| CTGTTGTTCTCATAACGAAG+TGG | 0.627481 | 8_3:-37213407 | None:intergenic |
| TCCGGAGGATGGAAAGCCAA+GGG | 0.642508 | 8_3:-37213478 | None:intergenic |
| TTCACGAAGCAAGAGTGAAG+TGG | 0.649891 | 8_3:-37213317 | None:intergenic |
| TATGAGAACAACAGATTGCG+CGG | 0.657146 | 8_3:+37213416 | Msa1287260:CDS |
| ATCACCTGCAAAACACACAA+AGG | 0.676940 | 8_3:+37213197 | Msa1287260:CDS |
| TGAGTCTTTGAGCAATCCGG+AGG | 0.686001 | 8_3:-37213493 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTAATTTTTGATGATC+AGG | + | chr8_3:37213007-37213026 | Msa1287260:intron | 20.0% |
| !!! | TCTTTAATTTTTGATGATCA+GGG | + | chr8_3:37213008-37213027 | Msa1287260:intron | 20.0% |
| !!! | TTCTTTAATTTTTGATGATC+AGG | + | chr8_3:37213007-37213026 | Msa1287260:intron | 20.0% |
| !!! | TCTTTAATTTTTGATGATCA+GGG | + | chr8_3:37213008-37213027 | Msa1287260:intron | 20.0% |
| ! | ATTCTGCTTAGAATTAGAAT+TGG | + | chr8_3:37212240-37212259 | Msa1287260:intron | 25.0% |
| ! | AGAATATCTTGTACACATTT+GGG | - | chr8_3:37212333-37212352 | None:intergenic | 25.0% |
| !!! | ATAGCTACTTTTTCTGAATT+TGG | + | chr8_3:37212490-37212509 | Msa1287260:intron | 25.0% |
| !!! | CTCTTCATTGATAGTTTTTT+GGG | + | chr8_3:37212639-37212658 | Msa1287260:intron | 25.0% |
| ! | TTTATGCAATAAGTGAAGAT+TGG | + | chr8_3:37212854-37212873 | Msa1287260:intron | 25.0% |
| ! | AAAATTAGTTACTGTCAATG+TGG | - | chr8_3:37212980-37212999 | None:intergenic | 25.0% |
| !!! | CTTTAATTTTTGATGATCAG+GGG | + | chr8_3:37213009-37213028 | Msa1287260:intron | 25.0% |
| !! | ATTTTCTTCTCTGTTGTATA+TGG | - | chr8_3:37213077-37213096 | None:intergenic | 25.0% |
| ! | AATGTTAATTACGGTTTGAA+TGG | + | chr8_3:37213380-37213399 | Msa1287260:CDS | 25.0% |
| ! | ATTCTGCTTAGAATTAGAAT+TGG | + | chr8_3:37212240-37212259 | Msa1287260:intron | 25.0% |
| ! | AGAATATCTTGTACACATTT+GGG | - | chr8_3:37212333-37212352 | None:intergenic | 25.0% |
| !!! | ATAGCTACTTTTTCTGAATT+TGG | + | chr8_3:37212490-37212509 | Msa1287260:intron | 25.0% |
| !!! | CTCTTCATTGATAGTTTTTT+GGG | + | chr8_3:37212639-37212658 | Msa1287260:intron | 25.0% |
| ! | TTTATGCAATAAGTGAAGAT+TGG | + | chr8_3:37212854-37212873 | Msa1287260:intron | 25.0% |
| ! | AAAATTAGTTACTGTCAATG+TGG | - | chr8_3:37212980-37212999 | None:intergenic | 25.0% |
| !!! | CTTTAATTTTTGATGATCAG+GGG | + | chr8_3:37213009-37213028 | Msa1287260:intron | 25.0% |
| !! | ATTTTCTTCTCTGTTGTATA+TGG | - | chr8_3:37213077-37213096 | None:intergenic | 25.0% |
| ! | AATGTTAATTACGGTTTGAA+TGG | + | chr8_3:37213380-37213399 | Msa1287260:CDS | 25.0% |
| GAGAATATCTTGTACACATT+TGG | - | chr8_3:37212334-37212353 | None:intergenic | 30.0% | |
| CTATATGCTCATGCTATATA+AGG | - | chr8_3:37212392-37212411 | None:intergenic | 30.0% | |
| ! | TGAAGTCAATTGATAGCTAA+TGG | + | chr8_3:37212460-37212479 | Msa1287260:intron | 30.0% |
| TAAACCTGTTGAAATTTCTG+AGG | - | chr8_3:37212614-37212633 | None:intergenic | 30.0% | |
| !!! | GCTCTTCATTGATAGTTTTT+TGG | + | chr8_3:37212638-37212657 | Msa1287260:intron | 30.0% |
| ! | ATAGAGTAGATGAAGTTGAT+TGG | + | chr8_3:37212684-37212703 | Msa1287260:intron | 30.0% |
| ! | TAGAGTAGATGAAGTTGATT+GGG | + | chr8_3:37212685-37212704 | Msa1287260:intron | 30.0% |
| !!! | ACGAATTTTTGTTGTTCTCA+AGG | + | chr8_3:37212743-37212762 | Msa1287260:intron | 30.0% |
| CTCTATTAACTTTGTACATG+CGG | + | chr8_3:37212883-37212902 | Msa1287260:intron | 30.0% | |
| CTCTTAATAAATTTCGCCTA+AGG | - | chr8_3:37212932-37212951 | None:intergenic | 30.0% | |
| AACAGAGAAGAAAATAGATG+TGG | + | chr8_3:37213082-37213101 | Msa1287260:intron | 30.0% | |
| !! | GTTTTTCAGACAGACAAAAA+TGG | + | chr8_3:37213239-37213258 | Msa1287260:CDS | 30.0% |
| GTGGATGATCTGTTATATAA+TGG | - | chr8_3:37213301-37213320 | None:intergenic | 30.0% | |
| ATGAATCTCAAAATGGTTGA+TGG | - | chr8_3:37213552-37213571 | None:intergenic | 30.0% | |
| GAGAATATCTTGTACACATT+TGG | - | chr8_3:37212334-37212353 | None:intergenic | 30.0% | |
| CTATATGCTCATGCTATATA+AGG | - | chr8_3:37212392-37212411 | None:intergenic | 30.0% | |
| ! | TGAAGTCAATTGATAGCTAA+TGG | + | chr8_3:37212460-37212479 | Msa1287260:intron | 30.0% |
| TAAACCTGTTGAAATTTCTG+AGG | - | chr8_3:37212614-37212633 | None:intergenic | 30.0% | |
| !!! | GCTCTTCATTGATAGTTTTT+TGG | + | chr8_3:37212638-37212657 | Msa1287260:intron | 30.0% |
| ! | ATAGAGTAGATGAAGTTGAT+TGG | + | chr8_3:37212684-37212703 | Msa1287260:intron | 30.0% |
| ! | TAGAGTAGATGAAGTTGATT+GGG | + | chr8_3:37212685-37212704 | Msa1287260:intron | 30.0% |
| !!! | ACGAATTTTTGTTGTTCTCA+AGG | + | chr8_3:37212743-37212762 | Msa1287260:intron | 30.0% |
| CTCTATTAACTTTGTACATG+CGG | + | chr8_3:37212883-37212902 | Msa1287260:intron | 30.0% | |
| CTCTTAATAAATTTCGCCTA+AGG | - | chr8_3:37212932-37212951 | None:intergenic | 30.0% | |
| AACAGAGAAGAAAATAGATG+TGG | + | chr8_3:37213082-37213101 | Msa1287260:intron | 30.0% | |
| !! | GTTTTTCAGACAGACAAAAA+TGG | + | chr8_3:37213239-37213258 | Msa1287260:CDS | 30.0% |
| GTGGATGATCTGTTATATAA+TGG | - | chr8_3:37213301-37213320 | None:intergenic | 30.0% | |
| ATGAATCTCAAAATGGTTGA+TGG | - | chr8_3:37213552-37213571 | None:intergenic | 30.0% | |
| ! | GCTATCAATTGACTTCAAGT+AGG | - | chr8_3:37212457-37212476 | None:intergenic | 35.0% |
| AAGTCCTCAGAAATTTCAAC+AGG | + | chr8_3:37212607-37212626 | Msa1287260:intron | 35.0% | |
| !!! | GTTTTTTGGGATGTGTACTT+TGG | + | chr8_3:37212652-37212671 | Msa1287260:intron | 35.0% |
| !! | TGATGTGTCTAAGACTTTTG+AGG | + | chr8_3:37212906-37212925 | Msa1287260:intron | 35.0% |
| GAAGAAAATAGATGTGGTTG+TGG | + | chr8_3:37213088-37213107 | Msa1287260:intron | 35.0% | |
| AGGTCATGTTAGTTACTACA+AGG | + | chr8_3:37213217-37213236 | Msa1287260:CDS | 35.0% | |
| GTTCTCGCGAATGTTAATTA+CGG | + | chr8_3:37213371-37213390 | Msa1287260:CDS | 35.0% | |
| TGTTATATATACAGCTGGTC+CGG | + | chr8_3:37213454-37213473 | Msa1287260:CDS | 35.0% | |
| GGGTAATTCATAATGGTTTG+AGG | - | chr8_3:37213528-37213547 | None:intergenic | 35.0% | |
| TGATGGAGGGTAATTCATAA+TGG | - | chr8_3:37213535-37213554 | None:intergenic | 35.0% | |
| !! | ATCTCAAAATGGTTGATGGA+GGG | - | chr8_3:37213548-37213567 | None:intergenic | 35.0% |
| !! | AATCTCAAAATGGTTGATGG+AGG | - | chr8_3:37213549-37213568 | None:intergenic | 35.0% |
| ! | GCTATCAATTGACTTCAAGT+AGG | - | chr8_3:37212457-37212476 | None:intergenic | 35.0% |
| AAGTCCTCAGAAATTTCAAC+AGG | + | chr8_3:37212607-37212626 | Msa1287260:intron | 35.0% | |
| !!! | GTTTTTTGGGATGTGTACTT+TGG | + | chr8_3:37212652-37212671 | Msa1287260:intron | 35.0% |
| !! | TGATGTGTCTAAGACTTTTG+AGG | + | chr8_3:37212906-37212925 | Msa1287260:intron | 35.0% |
| GAAGAAAATAGATGTGGTTG+TGG | + | chr8_3:37213088-37213107 | Msa1287260:intron | 35.0% | |
| AGGTCATGTTAGTTACTACA+AGG | + | chr8_3:37213217-37213236 | Msa1287260:CDS | 35.0% | |
| GTTCTCGCGAATGTTAATTA+CGG | + | chr8_3:37213371-37213390 | Msa1287260:CDS | 35.0% | |
| TGTTATATATACAGCTGGTC+CGG | + | chr8_3:37213454-37213473 | Msa1287260:CDS | 35.0% | |
| GGGTAATTCATAATGGTTTG+AGG | - | chr8_3:37213528-37213547 | None:intergenic | 35.0% | |
| TGATGGAGGGTAATTCATAA+TGG | - | chr8_3:37213535-37213554 | None:intergenic | 35.0% | |
| !! | ATCTCAAAATGGTTGATGGA+GGG | - | chr8_3:37213548-37213567 | None:intergenic | 35.0% |
| !! | AATCTCAAAATGGTTGATGG+AGG | - | chr8_3:37213549-37213568 | None:intergenic | 35.0% |
| ACACTTTGTTCCTACCCTAA+TGG | + | chr8_3:37212273-37212292 | Msa1287260:intron | 40.0% | |
| CACTTTGTTCCTACCCTAAT+GGG | + | chr8_3:37212274-37212293 | Msa1287260:intron | 40.0% | |
| ATGAGCATATAGACCAGTAG+TGG | + | chr8_3:37212400-37212419 | Msa1287260:intron | 40.0% | |
| !!! | TCTAAGACTTTTGAGGCCTT+AGG | + | chr8_3:37212913-37212932 | Msa1287260:intron | 40.0% |
| CTTACTTTGGCTGAAGGAAT+TGG | - | chr8_3:37213176-37213195 | None:intergenic | 40.0% | |
| TTTGCAGGTGATGCTTACTT+TGG | - | chr8_3:37213189-37213208 | None:intergenic | 40.0% | |
| ATCACCTGCAAAACACACAA+AGG | + | chr8_3:37213197-37213216 | Msa1287260:CDS | 40.0% | |
| ! | ATGACCTTTGTGTGTTTTGC+AGG | - | chr8_3:37213204-37213223 | None:intergenic | 40.0% |
| TACCTCTATGCACAACTAGA+AGG | + | chr8_3:37213263-37213282 | Msa1287260:CDS | 40.0% | |
| ! | ATCCTTCTAGTTGTGCATAG+AGG | - | chr8_3:37213268-37213287 | None:intergenic | 40.0% |
| CTGTTGTTCTCATAACGAAG+TGG | - | chr8_3:37213410-37213429 | None:intergenic | 40.0% | |
| TATGAGAACAACAGATTGCG+CGG | + | chr8_3:37213416-37213435 | Msa1287260:CDS | 40.0% | |
| GAGGCTGTTATATATACAGC+TGG | + | chr8_3:37213449-37213468 | Msa1287260:CDS | 40.0% | |
| ACACTTTGTTCCTACCCTAA+TGG | + | chr8_3:37212273-37212292 | Msa1287260:intron | 40.0% | |
| CACTTTGTTCCTACCCTAAT+GGG | + | chr8_3:37212274-37212293 | Msa1287260:intron | 40.0% | |
| ATGAGCATATAGACCAGTAG+TGG | + | chr8_3:37212400-37212419 | Msa1287260:intron | 40.0% | |
| !!! | TCTAAGACTTTTGAGGCCTT+AGG | + | chr8_3:37212913-37212932 | Msa1287260:intron | 40.0% |
| CTTACTTTGGCTGAAGGAAT+TGG | - | chr8_3:37213176-37213195 | None:intergenic | 40.0% | |
| TTTGCAGGTGATGCTTACTT+TGG | - | chr8_3:37213189-37213208 | None:intergenic | 40.0% | |
| ATCACCTGCAAAACACACAA+AGG | + | chr8_3:37213197-37213216 | Msa1287260:CDS | 40.0% | |
| ! | ATGACCTTTGTGTGTTTTGC+AGG | - | chr8_3:37213204-37213223 | None:intergenic | 40.0% |
| TACCTCTATGCACAACTAGA+AGG | + | chr8_3:37213263-37213282 | Msa1287260:CDS | 40.0% | |
| ! | ATCCTTCTAGTTGTGCATAG+AGG | - | chr8_3:37213268-37213287 | None:intergenic | 40.0% |
| CTGTTGTTCTCATAACGAAG+TGG | - | chr8_3:37213410-37213429 | None:intergenic | 40.0% | |
| TATGAGAACAACAGATTGCG+CGG | + | chr8_3:37213416-37213435 | Msa1287260:CDS | 40.0% | |
| GAGGCTGTTATATATACAGC+TGG | + | chr8_3:37213449-37213468 | Msa1287260:CDS | 40.0% | |
| ! | TTGTTCCTACCCTAATGGGT+TGG | + | chr8_3:37212278-37212297 | Msa1287260:intron | 45.0% |
| TTAAGCCAACCCATTAGGGT+AGG | - | chr8_3:37212286-37212305 | None:intergenic | 45.0% | |
| !! | ACCCTAATGGGTTGGCTTAA+TGG | + | chr8_3:37212286-37212305 | Msa1287260:intron | 45.0% |
| GCCATTAAGCCAACCCATTA+GGG | - | chr8_3:37212290-37212309 | None:intergenic | 45.0% | |
| TGCCATTAAGCCAACCCATT+AGG | - | chr8_3:37212291-37212310 | None:intergenic | 45.0% | |
| TGGCTTAATGGCACTACACT+AGG | + | chr8_3:37212298-37212317 | Msa1287260:intron | 45.0% | |
| AGCATATAGACCAGTAGTGG+TGG | + | chr8_3:37212403-37212422 | Msa1287260:intron | 45.0% | |
| ATGCTACATACCACCACTAC+TGG | - | chr8_3:37212416-37212435 | None:intergenic | 45.0% | |
| TGTCAAACCTGTGACCATTC+TGG | + | chr8_3:37213125-37213144 | Msa1287260:CDS | 45.0% | |
| TTTGGCTGAAGGAATTGGCT+TGG | - | chr8_3:37213171-37213190 | None:intergenic | 45.0% | |
| GTGATGCTTACTTTGGCTGA+AGG | - | chr8_3:37213182-37213201 | None:intergenic | 45.0% | |
| TTCACGAAGCAAGAGTGAAG+TGG | - | chr8_3:37213320-37213339 | None:intergenic | 45.0% | |
| CTTTCAAGAGGAGACCAAAC+AGG | - | chr8_3:37213344-37213363 | None:intergenic | 45.0% | |
| AGAACGCTGCAACTTTCAAG+AGG | - | chr8_3:37213356-37213375 | None:intergenic | 45.0% | |
| CAGTGAGTCTTTGAGCAATC+CGG | - | chr8_3:37213499-37213518 | None:intergenic | 45.0% | |
| ! | TTGTTCCTACCCTAATGGGT+TGG | + | chr8_3:37212278-37212297 | Msa1287260:intron | 45.0% |
| TTAAGCCAACCCATTAGGGT+AGG | - | chr8_3:37212286-37212305 | None:intergenic | 45.0% | |
| !! | ACCCTAATGGGTTGGCTTAA+TGG | + | chr8_3:37212286-37212305 | Msa1287260:intron | 45.0% |
| GCCATTAAGCCAACCCATTA+GGG | - | chr8_3:37212290-37212309 | None:intergenic | 45.0% | |
| TGCCATTAAGCCAACCCATT+AGG | - | chr8_3:37212291-37212310 | None:intergenic | 45.0% | |
| TGGCTTAATGGCACTACACT+AGG | + | chr8_3:37212298-37212317 | Msa1287260:intron | 45.0% | |
| AGCATATAGACCAGTAGTGG+TGG | + | chr8_3:37212403-37212422 | Msa1287260:intron | 45.0% | |
| ATGCTACATACCACCACTAC+TGG | - | chr8_3:37212416-37212435 | None:intergenic | 45.0% | |
| TGTCAAACCTGTGACCATTC+TGG | + | chr8_3:37213125-37213144 | Msa1287260:CDS | 45.0% | |
| TTTGGCTGAAGGAATTGGCT+TGG | - | chr8_3:37213171-37213190 | None:intergenic | 45.0% | |
| GTGATGCTTACTTTGGCTGA+AGG | - | chr8_3:37213182-37213201 | None:intergenic | 45.0% | |
| TTCACGAAGCAAGAGTGAAG+TGG | - | chr8_3:37213320-37213339 | None:intergenic | 45.0% | |
| CTTTCAAGAGGAGACCAAAC+AGG | - | chr8_3:37213344-37213363 | None:intergenic | 45.0% | |
| AGAACGCTGCAACTTTCAAG+AGG | - | chr8_3:37213356-37213375 | None:intergenic | 45.0% | |
| CAGTGAGTCTTTGAGCAATC+CGG | - | chr8_3:37213499-37213518 | None:intergenic | 45.0% | |
| TTGGAGACCAGGTTCCAGAA+TGG | - | chr8_3:37213142-37213161 | None:intergenic | 50.0% | |
| ! | TCTGGAACCTGGTCTCCAAA+TGG | + | chr8_3:37213143-37213162 | Msa1287260:CDS | 50.0% |
| !! | GGAATTGGCTTGGCTCCATT+TGG | - | chr8_3:37213161-37213180 | None:intergenic | 50.0% |
| CTTGCTTCGTGAAGCCTGTT+TGG | + | chr8_3:37213327-37213346 | Msa1287260:CDS | 50.0% | |
| ACAACAGATTGCGCGGAAGT+AGG | + | chr8_3:37213423-37213442 | Msa1287260:CDS | 50.0% | |
| ATTGCGCGGAAGTAGGTATG+AGG | + | chr8_3:37213430-37213449 | Msa1287260:CDS | 50.0% | |
| TCTTTGAGCAATCCGGAGGA+TGG | - | chr8_3:37213492-37213511 | None:intergenic | 50.0% | |
| TGAGTCTTTGAGCAATCCGG+AGG | - | chr8_3:37213496-37213515 | None:intergenic | 50.0% | |
| TTGGAGACCAGGTTCCAGAA+TGG | - | chr8_3:37213142-37213161 | None:intergenic | 50.0% | |
| ! | TCTGGAACCTGGTCTCCAAA+TGG | + | chr8_3:37213143-37213162 | Msa1287260:CDS | 50.0% |
| !! | GGAATTGGCTTGGCTCCATT+TGG | - | chr8_3:37213161-37213180 | None:intergenic | 50.0% |
| CTTGCTTCGTGAAGCCTGTT+TGG | + | chr8_3:37213327-37213346 | Msa1287260:CDS | 50.0% | |
| ACAACAGATTGCGCGGAAGT+AGG | + | chr8_3:37213423-37213442 | Msa1287260:CDS | 50.0% | |
| ATTGCGCGGAAGTAGGTATG+AGG | + | chr8_3:37213430-37213449 | Msa1287260:CDS | 50.0% | |
| TCTTTGAGCAATCCGGAGGA+TGG | - | chr8_3:37213492-37213511 | None:intergenic | 50.0% | |
| TGAGTCTTTGAGCAATCCGG+AGG | - | chr8_3:37213496-37213515 | None:intergenic | 50.0% | |
| CCAGGTTCCAGAATGGTCAC+AGG | - | chr8_3:37213135-37213154 | None:intergenic | 55.0% | |
| !! | CCTGTGACCATTCTGGAACC+TGG | + | chr8_3:37213132-37213151 | Msa1287260:CDS | 55.0% |
| CTTGGCTCCATTTGGAGACC+AGG | - | chr8_3:37213153-37213172 | None:intergenic | 55.0% | |
| AGGATGGAAAGCCAAGGGAC+CGG | - | chr8_3:37213476-37213495 | None:intergenic | 55.0% | |
| ! | TCCCTTGGCTTTCCATCCTC+CGG | + | chr8_3:37213477-37213496 | Msa1287260:CDS | 55.0% |
| TCCGGAGGATGGAAAGCCAA+GGG | - | chr8_3:37213481-37213500 | None:intergenic | 55.0% | |
| ATCCGGAGGATGGAAAGCCA+AGG | - | chr8_3:37213482-37213501 | None:intergenic | 55.0% | |
| CCAGGTTCCAGAATGGTCAC+AGG | - | chr8_3:37213135-37213154 | None:intergenic | 55.0% | |
| !! | CCTGTGACCATTCTGGAACC+TGG | + | chr8_3:37213132-37213151 | Msa1287260:CDS | 55.0% |
| CTTGGCTCCATTTGGAGACC+AGG | - | chr8_3:37213153-37213172 | None:intergenic | 55.0% | |
| AGGATGGAAAGCCAAGGGAC+CGG | - | chr8_3:37213476-37213495 | None:intergenic | 55.0% | |
| ! | TCCCTTGGCTTTCCATCCTC+CGG | + | chr8_3:37213477-37213496 | Msa1287260:CDS | 55.0% |
| TCCGGAGGATGGAAAGCCAA+GGG | - | chr8_3:37213481-37213500 | None:intergenic | 55.0% | |
| ATCCGGAGGATGGAAAGCCA+AGG | - | chr8_3:37213482-37213501 | None:intergenic | 55.0% | |
| ATACAGCTGGTCCGGTCCCT+TGG | + | chr8_3:37213462-37213481 | Msa1287260:CDS | 60.0% | |
| ATACAGCTGGTCCGGTCCCT+TGG | + | chr8_3:37213462-37213481 | Msa1287260:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 37212105 | 37213574 | 37212105 | ID=Msa1287260;Name=Msa1287260 |
| chr8_3 | mRNA | 37212105 | 37213574 | 37212105 | ID=Msa1287260-mRNA-1;Parent=Msa1287260;Name=Msa1287260-mRNA-1;_AED=0.50;_eAED=0.54;_QI=0|0|0|0.5|0|0|2|0|152 |
| chr8_3 | exon | 37212105 | 37212108 | 37212105 | ID=Msa1287260-mRNA-1:exon:10784;Parent=Msa1287260-mRNA-1 |
| chr8_3 | exon | 37213120 | 37213574 | 37213120 | ID=Msa1287260-mRNA-1:exon:10785;Parent=Msa1287260-mRNA-1 |
| chr8_3 | CDS | 37212105 | 37212108 | 37212105 | ID=Msa1287260-mRNA-1:cds;Parent=Msa1287260-mRNA-1 |
| chr8_3 | CDS | 37213120 | 37213574 | 37213120 | ID=Msa1287260-mRNA-1:cds;Parent=Msa1287260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
