Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287270 | XP_003600960.1 | 83.607 | 122 | 20 | 0 | 2 | 123 | 37 | 158 | 3.31e-71 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287270 | G7JBX1 | 83.607 | 122 | 20 | 0 | 2 | 123 | 37 | 158 | 1.58e-71 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0701010 | Msa1287270 | 0.802092 | 6.609492e-49 | -8.615850e-47 |
| Msa0768290 | Msa1287270 | 0.827356 | 1.636626e-54 | -8.615850e-47 |
| Msa0768370 | Msa1287270 | 0.821301 | 4.341762e-53 | -8.615850e-47 |
| Msa1287260 | Msa1287270 | 0.979068 | 3.662824e-147 | -8.615850e-47 |
| Msa1287270 | Msa1287280 | 0.981417 | 1.543447e-152 | -8.615850e-47 |
| Msa1287270 | Msa1287300 | 0.963888 | 1.222405e-122 | -8.615850e-47 |
| Msa1287270 | Msa1366810 | 0.821714 | 3.486441e-53 | -8.615850e-47 |
| Msa1121490 | Msa1287270 | 0.808680 | 2.749824e-50 | -8.615850e-47 |
| Msa0844490 | Msa1287270 | 0.826692 | 2.359591e-54 | -8.615850e-47 |
| Msa0966750 | Msa1287270 | 0.813910 | 2.014928e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287270 | MtrunA17_Chr3g0113941 | 83.607 | 122 | 20 | 0 | 2 | 123 | 37 | 158 | 3.04e-75 | 221 |
| Msa1287270 | MtrunA17_Chr5g0400511 | 90.909 | 110 | 7 | 1 | 2 | 111 | 25 | 131 | 6.21e-70 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287270 | AT5G05500.1 | 54.472 | 123 | 56 | 0 | 1 | 123 | 48 | 170 | 3.42e-46 | 149 |
Find 42 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTTCGTGAAGCCTGTT+TGG | 0.325880 | 8_3:+37214933 | Msa1287270:CDS |
| CTTACTTTGGCTGAAGGAAT+TGG | 0.336962 | 8_3:-37214779 | None:intergenic |
| GGAATTGGCTTGGCTCCATT+TGG | 0.360987 | 8_3:-37214764 | None:intergenic |
| TGTCAAACCTGTGACCATTC+TGG | 0.370477 | 8_3:+37214731 | Msa1287270:CDS |
| TCCCTTGGCTTTCCATCCTC+CGG | 0.372532 | 8_3:+37215083 | Msa1287270:CDS |
| AATGTTAATTACGGTTTGAA+TGG | 0.379533 | 8_3:+37214986 | Msa1287270:CDS |
| TGATGGAGGGTAATTCATAA+TGG | 0.398616 | 8_3:-37215138 | None:intergenic |
| CTTGGCTCCATTTGGAGACC+AGG | 0.399766 | 8_3:-37214756 | None:intergenic |
| ATAGTCAATGAATCTCAAAA+TGG | 0.408240 | 8_3:-37215162 | None:intergenic |
| ATGAATCTCAAAATGGTTGA+TGG | 0.427371 | 8_3:-37215155 | None:intergenic |
| TACCTCTATGCACAACTAGA+AGG | 0.432988 | 8_3:+37214869 | Msa1287270:CDS |
| ATACAGCTGGTCCGGTCCCT+TGG | 0.446078 | 8_3:+37215068 | Msa1287270:CDS |
| CAGTGAGTCTTTGAGCAATC+CGG | 0.449568 | 8_3:-37215102 | None:intergenic |
| CTTTCAAGAGGAGACCAAAC+AGG | 0.457911 | 8_3:-37214947 | None:intergenic |
| TTTGGCTGAAGGAATTGGCT+TGG | 0.461478 | 8_3:-37214774 | None:intergenic |
| GTTCTCGCGAATGTTAATTA+CGG | 0.468294 | 8_3:+37214977 | Msa1287270:CDS |
| TTTGCAGGTGATGCTTACTT+TGG | 0.477583 | 8_3:-37214792 | None:intergenic |
| GTGGATGATCTGTTATATAA+TGG | 0.479481 | 8_3:-37214904 | None:intergenic |
| TCTGGAACCTGGTCTCCAAA+TGG | 0.493284 | 8_3:+37214749 | Msa1287270:CDS |
| AGGATGGAAAGCCAAGGGAC+CGG | 0.510219 | 8_3:-37215079 | None:intergenic |
| CCTGTGACCATTCTGGAACC+TGG | 0.530238 | 8_3:+37214738 | Msa1287270:CDS |
| ATCCTTCTAGTTGTGCATAG+AGG | 0.530865 | 8_3:-37214871 | None:intergenic |
| TGTTATATATACAGCTGGTC+CGG | 0.538774 | 8_3:+37215060 | Msa1287270:CDS |
| GGGTAATTCATAATGGTTTG+AGG | 0.542497 | 8_3:-37215131 | None:intergenic |
| ACAACAGATTGCGCGGAAGT+AGG | 0.545277 | 8_3:+37215029 | Msa1287270:CDS |
| AGGTCATGTTAGTTACTACA+AGG | 0.552650 | 8_3:+37214823 | Msa1287270:CDS |
| ATTGCGCGGAAGTAGGTATG+AGG | 0.556644 | 8_3:+37215036 | Msa1287270:CDS |
| GAGGCTGTTATATATACAGC+TGG | 0.561693 | 8_3:+37215055 | Msa1287270:CDS |
| TCTTTGAGCAATCCGGAGGA+TGG | 0.570627 | 8_3:-37215095 | None:intergenic |
| TTGGAGACCAGGTTCCAGAA+TGG | 0.573302 | 8_3:-37214745 | None:intergenic |
| AATCTCAAAATGGTTGATGG+AGG | 0.583391 | 8_3:-37215152 | None:intergenic |
| CCAGGTTCCAGAATGGTCAC+AGG | 0.585780 | 8_3:-37214738 | None:intergenic |
| ATCTCAAAATGGTTGATGGA+GGG | 0.596026 | 8_3:-37215151 | None:intergenic |
| GTGATGCTTACTTTGGCTGA+AGG | 0.603085 | 8_3:-37214785 | None:intergenic |
| ATCCGGAGGATGGAAAGCCA+AGG | 0.617016 | 8_3:-37215085 | None:intergenic |
| AGAACGCTGCAACTTTCAAG+AGG | 0.622703 | 8_3:-37214959 | None:intergenic |
| CTGTTGTTCTCATAACGAAG+TGG | 0.627481 | 8_3:-37215013 | None:intergenic |
| TCCGGAGGATGGAAAGCCAA+GGG | 0.642508 | 8_3:-37215084 | None:intergenic |
| TTCACGAAGCAAGAGTGAAG+TGG | 0.649891 | 8_3:-37214923 | None:intergenic |
| TATGAGAACAACAGATTGCG+CGG | 0.657146 | 8_3:+37215022 | Msa1287270:CDS |
| ATCACCTGCAAAACACACAA+AGG | 0.676940 | 8_3:+37214803 | Msa1287270:CDS |
| TGAGTCTTTGAGCAATCCGG+AGG | 0.686001 | 8_3:-37215099 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTAATTTTTGATGATC+AGG | + | chr8_3:37214613-37214632 | Msa1287270:intron | 20.0% |
| !!! | TCTTTAATTTTTGATGATCA+GGG | + | chr8_3:37214614-37214633 | Msa1287270:intron | 20.0% |
| !!! | TTCTTTAATTTTTGATGATC+AGG | + | chr8_3:37214613-37214632 | Msa1287270:intron | 20.0% |
| !!! | TCTTTAATTTTTGATGATCA+GGG | + | chr8_3:37214614-37214633 | Msa1287270:intron | 20.0% |
| ! | ATTCTGCTTAGAATTAGAAT+TGG | + | chr8_3:37213846-37213865 | Msa1287270:intron | 25.0% |
| ! | AGAATATCTTGTACACATTT+GGG | - | chr8_3:37213939-37213958 | None:intergenic | 25.0% |
| !!! | ATAGCTACTTTTTCTGAATT+TGG | + | chr8_3:37214096-37214115 | Msa1287270:intron | 25.0% |
| !!! | CTCTTCATTGATAGTTTTTT+GGG | + | chr8_3:37214245-37214264 | Msa1287270:intron | 25.0% |
| ! | TTTATGCAATAAGTGAAGAT+TGG | + | chr8_3:37214460-37214479 | Msa1287270:intron | 25.0% |
| ! | AAAATTAGTTACTGTCAATG+TGG | - | chr8_3:37214586-37214605 | None:intergenic | 25.0% |
| !!! | CTTTAATTTTTGATGATCAG+GGG | + | chr8_3:37214615-37214634 | Msa1287270:intron | 25.0% |
| !! | ATTTTCTTCTCTGTTGTATA+TGG | - | chr8_3:37214683-37214702 | None:intergenic | 25.0% |
| ! | AATGTTAATTACGGTTTGAA+TGG | + | chr8_3:37214986-37215005 | Msa1287270:CDS | 25.0% |
| ! | ATTCTGCTTAGAATTAGAAT+TGG | + | chr8_3:37213846-37213865 | Msa1287270:intron | 25.0% |
| ! | AGAATATCTTGTACACATTT+GGG | - | chr8_3:37213939-37213958 | None:intergenic | 25.0% |
| !!! | ATAGCTACTTTTTCTGAATT+TGG | + | chr8_3:37214096-37214115 | Msa1287270:intron | 25.0% |
| !!! | CTCTTCATTGATAGTTTTTT+GGG | + | chr8_3:37214245-37214264 | Msa1287270:intron | 25.0% |
| ! | TTTATGCAATAAGTGAAGAT+TGG | + | chr8_3:37214460-37214479 | Msa1287270:intron | 25.0% |
| ! | AAAATTAGTTACTGTCAATG+TGG | - | chr8_3:37214586-37214605 | None:intergenic | 25.0% |
| !!! | CTTTAATTTTTGATGATCAG+GGG | + | chr8_3:37214615-37214634 | Msa1287270:intron | 25.0% |
| !! | ATTTTCTTCTCTGTTGTATA+TGG | - | chr8_3:37214683-37214702 | None:intergenic | 25.0% |
| ! | AATGTTAATTACGGTTTGAA+TGG | + | chr8_3:37214986-37215005 | Msa1287270:CDS | 25.0% |
| GAGAATATCTTGTACACATT+TGG | - | chr8_3:37213940-37213959 | None:intergenic | 30.0% | |
| CTATATGCTCATGCTATATA+AGG | - | chr8_3:37213998-37214017 | None:intergenic | 30.0% | |
| ! | TGAAGTCAATTGATAGCTAA+TGG | + | chr8_3:37214066-37214085 | Msa1287270:intron | 30.0% |
| TAAACCTGTTGAAATTTCTG+AGG | - | chr8_3:37214220-37214239 | None:intergenic | 30.0% | |
| !!! | GCTCTTCATTGATAGTTTTT+TGG | + | chr8_3:37214244-37214263 | Msa1287270:intron | 30.0% |
| ! | ATAGAGTAGATGAAGTTGAT+TGG | + | chr8_3:37214290-37214309 | Msa1287270:intron | 30.0% |
| ! | TAGAGTAGATGAAGTTGATT+GGG | + | chr8_3:37214291-37214310 | Msa1287270:intron | 30.0% |
| !!! | ACGAATTTTTGTTGTTCTCA+AGG | + | chr8_3:37214349-37214368 | Msa1287270:intron | 30.0% |
| CTCTATTAACTTTGTACATG+CGG | + | chr8_3:37214489-37214508 | Msa1287270:intron | 30.0% | |
| CTCTTAATAAATTTCGCCTA+AGG | - | chr8_3:37214538-37214557 | None:intergenic | 30.0% | |
| AACAGAGAAGAAAATAGATG+TGG | + | chr8_3:37214688-37214707 | Msa1287270:intron | 30.0% | |
| !! | GTTTTTCAGACAGACAAAAA+TGG | + | chr8_3:37214845-37214864 | Msa1287270:CDS | 30.0% |
| GTGGATGATCTGTTATATAA+TGG | - | chr8_3:37214907-37214926 | None:intergenic | 30.0% | |
| ATGAATCTCAAAATGGTTGA+TGG | - | chr8_3:37215158-37215177 | None:intergenic | 30.0% | |
| GAGAATATCTTGTACACATT+TGG | - | chr8_3:37213940-37213959 | None:intergenic | 30.0% | |
| CTATATGCTCATGCTATATA+AGG | - | chr8_3:37213998-37214017 | None:intergenic | 30.0% | |
| ! | TGAAGTCAATTGATAGCTAA+TGG | + | chr8_3:37214066-37214085 | Msa1287270:intron | 30.0% |
| TAAACCTGTTGAAATTTCTG+AGG | - | chr8_3:37214220-37214239 | None:intergenic | 30.0% | |
| !!! | GCTCTTCATTGATAGTTTTT+TGG | + | chr8_3:37214244-37214263 | Msa1287270:intron | 30.0% |
| ! | ATAGAGTAGATGAAGTTGAT+TGG | + | chr8_3:37214290-37214309 | Msa1287270:intron | 30.0% |
| ! | TAGAGTAGATGAAGTTGATT+GGG | + | chr8_3:37214291-37214310 | Msa1287270:intron | 30.0% |
| !!! | ACGAATTTTTGTTGTTCTCA+AGG | + | chr8_3:37214349-37214368 | Msa1287270:intron | 30.0% |
| CTCTATTAACTTTGTACATG+CGG | + | chr8_3:37214489-37214508 | Msa1287270:intron | 30.0% | |
| CTCTTAATAAATTTCGCCTA+AGG | - | chr8_3:37214538-37214557 | None:intergenic | 30.0% | |
| AACAGAGAAGAAAATAGATG+TGG | + | chr8_3:37214688-37214707 | Msa1287270:intron | 30.0% | |
| !! | GTTTTTCAGACAGACAAAAA+TGG | + | chr8_3:37214845-37214864 | Msa1287270:CDS | 30.0% |
| GTGGATGATCTGTTATATAA+TGG | - | chr8_3:37214907-37214926 | None:intergenic | 30.0% | |
| ATGAATCTCAAAATGGTTGA+TGG | - | chr8_3:37215158-37215177 | None:intergenic | 30.0% | |
| ! | GCTATCAATTGACTTCAAGT+AGG | - | chr8_3:37214063-37214082 | None:intergenic | 35.0% |
| AAGTCCTCAGAAATTTCAAC+AGG | + | chr8_3:37214213-37214232 | Msa1287270:intron | 35.0% | |
| !!! | GTTTTTTGGGATGTGTACTT+TGG | + | chr8_3:37214258-37214277 | Msa1287270:intron | 35.0% |
| !! | TGATGTGTCTAAGACTTTTG+AGG | + | chr8_3:37214512-37214531 | Msa1287270:intron | 35.0% |
| GAAGAAAATAGATGTGGTTG+TGG | + | chr8_3:37214694-37214713 | Msa1287270:intron | 35.0% | |
| AGGTCATGTTAGTTACTACA+AGG | + | chr8_3:37214823-37214842 | Msa1287270:CDS | 35.0% | |
| GTTCTCGCGAATGTTAATTA+CGG | + | chr8_3:37214977-37214996 | Msa1287270:CDS | 35.0% | |
| TGTTATATATACAGCTGGTC+CGG | + | chr8_3:37215060-37215079 | Msa1287270:CDS | 35.0% | |
| GGGTAATTCATAATGGTTTG+AGG | - | chr8_3:37215134-37215153 | None:intergenic | 35.0% | |
| TGATGGAGGGTAATTCATAA+TGG | - | chr8_3:37215141-37215160 | None:intergenic | 35.0% | |
| !! | ATCTCAAAATGGTTGATGGA+GGG | - | chr8_3:37215154-37215173 | None:intergenic | 35.0% |
| !! | AATCTCAAAATGGTTGATGG+AGG | - | chr8_3:37215155-37215174 | None:intergenic | 35.0% |
| ! | GCTATCAATTGACTTCAAGT+AGG | - | chr8_3:37214063-37214082 | None:intergenic | 35.0% |
| AAGTCCTCAGAAATTTCAAC+AGG | + | chr8_3:37214213-37214232 | Msa1287270:intron | 35.0% | |
| !!! | GTTTTTTGGGATGTGTACTT+TGG | + | chr8_3:37214258-37214277 | Msa1287270:intron | 35.0% |
| !! | TGATGTGTCTAAGACTTTTG+AGG | + | chr8_3:37214512-37214531 | Msa1287270:intron | 35.0% |
| GAAGAAAATAGATGTGGTTG+TGG | + | chr8_3:37214694-37214713 | Msa1287270:intron | 35.0% | |
| AGGTCATGTTAGTTACTACA+AGG | + | chr8_3:37214823-37214842 | Msa1287270:CDS | 35.0% | |
| GTTCTCGCGAATGTTAATTA+CGG | + | chr8_3:37214977-37214996 | Msa1287270:CDS | 35.0% | |
| TGTTATATATACAGCTGGTC+CGG | + | chr8_3:37215060-37215079 | Msa1287270:CDS | 35.0% | |
| GGGTAATTCATAATGGTTTG+AGG | - | chr8_3:37215134-37215153 | None:intergenic | 35.0% | |
| TGATGGAGGGTAATTCATAA+TGG | - | chr8_3:37215141-37215160 | None:intergenic | 35.0% | |
| !! | ATCTCAAAATGGTTGATGGA+GGG | - | chr8_3:37215154-37215173 | None:intergenic | 35.0% |
| !! | AATCTCAAAATGGTTGATGG+AGG | - | chr8_3:37215155-37215174 | None:intergenic | 35.0% |
| ACACTTTGTTCCTACCCTAA+TGG | + | chr8_3:37213879-37213898 | Msa1287270:intron | 40.0% | |
| CACTTTGTTCCTACCCTAAT+GGG | + | chr8_3:37213880-37213899 | Msa1287270:intron | 40.0% | |
| ATGAGCATATAGACCAGTAG+TGG | + | chr8_3:37214006-37214025 | Msa1287270:intron | 40.0% | |
| !!! | TCTAAGACTTTTGAGGCCTT+AGG | + | chr8_3:37214519-37214538 | Msa1287270:intron | 40.0% |
| CTTACTTTGGCTGAAGGAAT+TGG | - | chr8_3:37214782-37214801 | None:intergenic | 40.0% | |
| TTTGCAGGTGATGCTTACTT+TGG | - | chr8_3:37214795-37214814 | None:intergenic | 40.0% | |
| ATCACCTGCAAAACACACAA+AGG | + | chr8_3:37214803-37214822 | Msa1287270:CDS | 40.0% | |
| ! | ATGACCTTTGTGTGTTTTGC+AGG | - | chr8_3:37214810-37214829 | None:intergenic | 40.0% |
| TACCTCTATGCACAACTAGA+AGG | + | chr8_3:37214869-37214888 | Msa1287270:CDS | 40.0% | |
| ! | ATCCTTCTAGTTGTGCATAG+AGG | - | chr8_3:37214874-37214893 | None:intergenic | 40.0% |
| CTGTTGTTCTCATAACGAAG+TGG | - | chr8_3:37215016-37215035 | None:intergenic | 40.0% | |
| TATGAGAACAACAGATTGCG+CGG | + | chr8_3:37215022-37215041 | Msa1287270:CDS | 40.0% | |
| GAGGCTGTTATATATACAGC+TGG | + | chr8_3:37215055-37215074 | Msa1287270:CDS | 40.0% | |
| ACACTTTGTTCCTACCCTAA+TGG | + | chr8_3:37213879-37213898 | Msa1287270:intron | 40.0% | |
| CACTTTGTTCCTACCCTAAT+GGG | + | chr8_3:37213880-37213899 | Msa1287270:intron | 40.0% | |
| ATGAGCATATAGACCAGTAG+TGG | + | chr8_3:37214006-37214025 | Msa1287270:intron | 40.0% | |
| !!! | TCTAAGACTTTTGAGGCCTT+AGG | + | chr8_3:37214519-37214538 | Msa1287270:intron | 40.0% |
| CTTACTTTGGCTGAAGGAAT+TGG | - | chr8_3:37214782-37214801 | None:intergenic | 40.0% | |
| TTTGCAGGTGATGCTTACTT+TGG | - | chr8_3:37214795-37214814 | None:intergenic | 40.0% | |
| ATCACCTGCAAAACACACAA+AGG | + | chr8_3:37214803-37214822 | Msa1287270:CDS | 40.0% | |
| ! | ATGACCTTTGTGTGTTTTGC+AGG | - | chr8_3:37214810-37214829 | None:intergenic | 40.0% |
| TACCTCTATGCACAACTAGA+AGG | + | chr8_3:37214869-37214888 | Msa1287270:CDS | 40.0% | |
| ! | ATCCTTCTAGTTGTGCATAG+AGG | - | chr8_3:37214874-37214893 | None:intergenic | 40.0% |
| CTGTTGTTCTCATAACGAAG+TGG | - | chr8_3:37215016-37215035 | None:intergenic | 40.0% | |
| TATGAGAACAACAGATTGCG+CGG | + | chr8_3:37215022-37215041 | Msa1287270:CDS | 40.0% | |
| GAGGCTGTTATATATACAGC+TGG | + | chr8_3:37215055-37215074 | Msa1287270:CDS | 40.0% | |
| ! | TTGTTCCTACCCTAATGGGT+TGG | + | chr8_3:37213884-37213903 | Msa1287270:intron | 45.0% |
| TTAAGCCAACCCATTAGGGT+AGG | - | chr8_3:37213892-37213911 | None:intergenic | 45.0% | |
| !! | ACCCTAATGGGTTGGCTTAA+TGG | + | chr8_3:37213892-37213911 | Msa1287270:intron | 45.0% |
| GCCATTAAGCCAACCCATTA+GGG | - | chr8_3:37213896-37213915 | None:intergenic | 45.0% | |
| TGCCATTAAGCCAACCCATT+AGG | - | chr8_3:37213897-37213916 | None:intergenic | 45.0% | |
| TGGCTTAATGGCACTACACT+AGG | + | chr8_3:37213904-37213923 | Msa1287270:intron | 45.0% | |
| AGCATATAGACCAGTAGTGG+TGG | + | chr8_3:37214009-37214028 | Msa1287270:intron | 45.0% | |
| ATGCTACATACCACCACTAC+TGG | - | chr8_3:37214022-37214041 | None:intergenic | 45.0% | |
| TGTCAAACCTGTGACCATTC+TGG | + | chr8_3:37214731-37214750 | Msa1287270:CDS | 45.0% | |
| TTTGGCTGAAGGAATTGGCT+TGG | - | chr8_3:37214777-37214796 | None:intergenic | 45.0% | |
| GTGATGCTTACTTTGGCTGA+AGG | - | chr8_3:37214788-37214807 | None:intergenic | 45.0% | |
| TTCACGAAGCAAGAGTGAAG+TGG | - | chr8_3:37214926-37214945 | None:intergenic | 45.0% | |
| CTTTCAAGAGGAGACCAAAC+AGG | - | chr8_3:37214950-37214969 | None:intergenic | 45.0% | |
| AGAACGCTGCAACTTTCAAG+AGG | - | chr8_3:37214962-37214981 | None:intergenic | 45.0% | |
| CAGTGAGTCTTTGAGCAATC+CGG | - | chr8_3:37215105-37215124 | None:intergenic | 45.0% | |
| ! | TTGTTCCTACCCTAATGGGT+TGG | + | chr8_3:37213884-37213903 | Msa1287270:intron | 45.0% |
| TTAAGCCAACCCATTAGGGT+AGG | - | chr8_3:37213892-37213911 | None:intergenic | 45.0% | |
| !! | ACCCTAATGGGTTGGCTTAA+TGG | + | chr8_3:37213892-37213911 | Msa1287270:intron | 45.0% |
| GCCATTAAGCCAACCCATTA+GGG | - | chr8_3:37213896-37213915 | None:intergenic | 45.0% | |
| TGCCATTAAGCCAACCCATT+AGG | - | chr8_3:37213897-37213916 | None:intergenic | 45.0% | |
| TGGCTTAATGGCACTACACT+AGG | + | chr8_3:37213904-37213923 | Msa1287270:intron | 45.0% | |
| AGCATATAGACCAGTAGTGG+TGG | + | chr8_3:37214009-37214028 | Msa1287270:intron | 45.0% | |
| ATGCTACATACCACCACTAC+TGG | - | chr8_3:37214022-37214041 | None:intergenic | 45.0% | |
| TGTCAAACCTGTGACCATTC+TGG | + | chr8_3:37214731-37214750 | Msa1287270:CDS | 45.0% | |
| TTTGGCTGAAGGAATTGGCT+TGG | - | chr8_3:37214777-37214796 | None:intergenic | 45.0% | |
| GTGATGCTTACTTTGGCTGA+AGG | - | chr8_3:37214788-37214807 | None:intergenic | 45.0% | |
| TTCACGAAGCAAGAGTGAAG+TGG | - | chr8_3:37214926-37214945 | None:intergenic | 45.0% | |
| CTTTCAAGAGGAGACCAAAC+AGG | - | chr8_3:37214950-37214969 | None:intergenic | 45.0% | |
| AGAACGCTGCAACTTTCAAG+AGG | - | chr8_3:37214962-37214981 | None:intergenic | 45.0% | |
| CAGTGAGTCTTTGAGCAATC+CGG | - | chr8_3:37215105-37215124 | None:intergenic | 45.0% | |
| TTGGAGACCAGGTTCCAGAA+TGG | - | chr8_3:37214748-37214767 | None:intergenic | 50.0% | |
| ! | TCTGGAACCTGGTCTCCAAA+TGG | + | chr8_3:37214749-37214768 | Msa1287270:CDS | 50.0% |
| !! | GGAATTGGCTTGGCTCCATT+TGG | - | chr8_3:37214767-37214786 | None:intergenic | 50.0% |
| CTTGCTTCGTGAAGCCTGTT+TGG | + | chr8_3:37214933-37214952 | Msa1287270:CDS | 50.0% | |
| ACAACAGATTGCGCGGAAGT+AGG | + | chr8_3:37215029-37215048 | Msa1287270:CDS | 50.0% | |
| ATTGCGCGGAAGTAGGTATG+AGG | + | chr8_3:37215036-37215055 | Msa1287270:CDS | 50.0% | |
| TCTTTGAGCAATCCGGAGGA+TGG | - | chr8_3:37215098-37215117 | None:intergenic | 50.0% | |
| TGAGTCTTTGAGCAATCCGG+AGG | - | chr8_3:37215102-37215121 | None:intergenic | 50.0% | |
| TTGGAGACCAGGTTCCAGAA+TGG | - | chr8_3:37214748-37214767 | None:intergenic | 50.0% | |
| ! | TCTGGAACCTGGTCTCCAAA+TGG | + | chr8_3:37214749-37214768 | Msa1287270:CDS | 50.0% |
| !! | GGAATTGGCTTGGCTCCATT+TGG | - | chr8_3:37214767-37214786 | None:intergenic | 50.0% |
| CTTGCTTCGTGAAGCCTGTT+TGG | + | chr8_3:37214933-37214952 | Msa1287270:CDS | 50.0% | |
| ACAACAGATTGCGCGGAAGT+AGG | + | chr8_3:37215029-37215048 | Msa1287270:CDS | 50.0% | |
| ATTGCGCGGAAGTAGGTATG+AGG | + | chr8_3:37215036-37215055 | Msa1287270:CDS | 50.0% | |
| TCTTTGAGCAATCCGGAGGA+TGG | - | chr8_3:37215098-37215117 | None:intergenic | 50.0% | |
| TGAGTCTTTGAGCAATCCGG+AGG | - | chr8_3:37215102-37215121 | None:intergenic | 50.0% | |
| CCAGGTTCCAGAATGGTCAC+AGG | - | chr8_3:37214741-37214760 | None:intergenic | 55.0% | |
| !! | CCTGTGACCATTCTGGAACC+TGG | + | chr8_3:37214738-37214757 | Msa1287270:CDS | 55.0% |
| CTTGGCTCCATTTGGAGACC+AGG | - | chr8_3:37214759-37214778 | None:intergenic | 55.0% | |
| AGGATGGAAAGCCAAGGGAC+CGG | - | chr8_3:37215082-37215101 | None:intergenic | 55.0% | |
| ! | TCCCTTGGCTTTCCATCCTC+CGG | + | chr8_3:37215083-37215102 | Msa1287270:CDS | 55.0% |
| TCCGGAGGATGGAAAGCCAA+GGG | - | chr8_3:37215087-37215106 | None:intergenic | 55.0% | |
| ATCCGGAGGATGGAAAGCCA+AGG | - | chr8_3:37215088-37215107 | None:intergenic | 55.0% | |
| CCAGGTTCCAGAATGGTCAC+AGG | - | chr8_3:37214741-37214760 | None:intergenic | 55.0% | |
| !! | CCTGTGACCATTCTGGAACC+TGG | + | chr8_3:37214738-37214757 | Msa1287270:CDS | 55.0% |
| CTTGGCTCCATTTGGAGACC+AGG | - | chr8_3:37214759-37214778 | None:intergenic | 55.0% | |
| AGGATGGAAAGCCAAGGGAC+CGG | - | chr8_3:37215082-37215101 | None:intergenic | 55.0% | |
| ! | TCCCTTGGCTTTCCATCCTC+CGG | + | chr8_3:37215083-37215102 | Msa1287270:CDS | 55.0% |
| TCCGGAGGATGGAAAGCCAA+GGG | - | chr8_3:37215087-37215106 | None:intergenic | 55.0% | |
| ATCCGGAGGATGGAAAGCCA+AGG | - | chr8_3:37215088-37215107 | None:intergenic | 55.0% | |
| ATACAGCTGGTCCGGTCCCT+TGG | + | chr8_3:37215068-37215087 | Msa1287270:CDS | 60.0% | |
| ATACAGCTGGTCCGGTCCCT+TGG | + | chr8_3:37215068-37215087 | Msa1287270:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 37213711 | 37215180 | 37213711 | ID=Msa1287270;Name=Msa1287270 |
| chr8_3 | mRNA | 37213711 | 37215180 | 37213711 | ID=Msa1287270-mRNA-1;Parent=Msa1287270;Name=Msa1287270-mRNA-1;_AED=0.50;_eAED=0.54;_QI=0|0|0|0.5|0|0|2|0|152 |
| chr8_3 | exon | 37213711 | 37213714 | 37213711 | ID=Msa1287270-mRNA-1:exon:10788;Parent=Msa1287270-mRNA-1 |
| chr8_3 | exon | 37214726 | 37215180 | 37214726 | ID=Msa1287270-mRNA-1:exon:10789;Parent=Msa1287270-mRNA-1 |
| chr8_3 | CDS | 37213711 | 37213714 | 37213711 | ID=Msa1287270-mRNA-1:cds;Parent=Msa1287270-mRNA-1 |
| chr8_3 | CDS | 37214726 | 37215180 | 37214726 | ID=Msa1287270-mRNA-1:cds;Parent=Msa1287270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
