Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287300 | XP_003600960.1 | 83.607 | 122 | 20 | 0 | 2 | 123 | 37 | 158 | 3.31e-71 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287300 | G7JBX1 | 83.607 | 122 | 20 | 0 | 2 | 123 | 37 | 158 | 1.58e-71 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0768290 | Msa1287300 | 0.811991 | 5.306087e-51 | -8.615850e-47 |
| Msa1287260 | Msa1287300 | 0.960928 | 4.089647e-119 | -8.615850e-47 |
| Msa1287270 | Msa1287300 | 0.963888 | 1.222405e-122 | -8.615850e-47 |
| Msa1287280 | Msa1287300 | 0.969679 | 1.768475e-130 | -8.615850e-47 |
| Msa1287300 | Msa1366810 | 0.803901 | 2.794439e-49 | -8.615850e-47 |
| Msa0844490 | Msa1287300 | 0.803675 | 3.112867e-49 | -8.615850e-47 |
| Msa0966750 | Msa1287300 | 0.807022 | 6.193004e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287300 | MtrunA17_Chr3g0113941 | 83.607 | 122 | 20 | 0 | 2 | 123 | 37 | 158 | 3.04e-75 | 221 |
| Msa1287300 | MtrunA17_Chr5g0400511 | 90.909 | 110 | 7 | 1 | 2 | 111 | 25 | 131 | 6.21e-70 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287300 | AT5G05500.1 | 54.472 | 123 | 56 | 0 | 1 | 123 | 48 | 170 | 3.42e-46 | 149 |
Find 42 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCTTCGTGAAGCCTGTT+TGG | 0.325880 | 8_3:+37219750 | Msa1287300:CDS |
| CTTACTTTGGCTGAAGGAAT+TGG | 0.336962 | 8_3:-37219596 | None:intergenic |
| GGAATTGGCTTGGCTCCATT+TGG | 0.360987 | 8_3:-37219581 | None:intergenic |
| TGTCAAACCTGTGACCATTC+TGG | 0.370477 | 8_3:+37219548 | Msa1287300:CDS |
| TCCCTTGGCTTTCCATCCTC+CGG | 0.372532 | 8_3:+37219900 | Msa1287300:CDS |
| AATGTTAATTACGGTTTGAA+TGG | 0.379533 | 8_3:+37219803 | Msa1287300:CDS |
| TGATGGAGGGTAATTCATAA+TGG | 0.398616 | 8_3:-37219955 | None:intergenic |
| CTTGGCTCCATTTGGAGACC+AGG | 0.399766 | 8_3:-37219573 | None:intergenic |
| ATAGTCAATGAATCTCAAAA+TGG | 0.408240 | 8_3:-37219979 | None:intergenic |
| ATGAATCTCAAAATGGTTGA+TGG | 0.427371 | 8_3:-37219972 | None:intergenic |
| TACCTCTATGCACAACTAGA+AGG | 0.432988 | 8_3:+37219686 | Msa1287300:CDS |
| ATACAGCTGGTCCGGTCCCT+TGG | 0.446078 | 8_3:+37219885 | Msa1287300:CDS |
| CAGTGAGTCTTTGAGCAATC+CGG | 0.449568 | 8_3:-37219919 | None:intergenic |
| CTTTCAAGAGGAGACCAAAC+AGG | 0.457911 | 8_3:-37219764 | None:intergenic |
| TTTGGCTGAAGGAATTGGCT+TGG | 0.461478 | 8_3:-37219591 | None:intergenic |
| GTTCTCGCGAATGTTAATTA+CGG | 0.468294 | 8_3:+37219794 | Msa1287300:CDS |
| TTTGCAGGTGATGCTTACTT+TGG | 0.477583 | 8_3:-37219609 | None:intergenic |
| GTGGATGATCTGTTATATAA+TGG | 0.479481 | 8_3:-37219721 | None:intergenic |
| TCTGGAACCTGGTCTCCAAA+TGG | 0.493284 | 8_3:+37219566 | Msa1287300:CDS |
| AGGATGGAAAGCCAAGGGAC+CGG | 0.510219 | 8_3:-37219896 | None:intergenic |
| CCTGTGACCATTCTGGAACC+TGG | 0.530238 | 8_3:+37219555 | Msa1287300:CDS |
| ATCCTTCTAGTTGTGCATAG+AGG | 0.530865 | 8_3:-37219688 | None:intergenic |
| TGTTATATATACAGCTGGTC+CGG | 0.538774 | 8_3:+37219877 | Msa1287300:CDS |
| GGGTAATTCATAATGGTTTG+AGG | 0.542497 | 8_3:-37219948 | None:intergenic |
| ACAACAGATTGCGCGGAAGT+AGG | 0.545277 | 8_3:+37219846 | Msa1287300:CDS |
| AGGTCATGTTAGTTACTACA+AGG | 0.552650 | 8_3:+37219640 | Msa1287300:CDS |
| ATTGCGCGGAAGTAGGTATG+AGG | 0.556644 | 8_3:+37219853 | Msa1287300:CDS |
| GAGGCTGTTATATATACAGC+TGG | 0.561693 | 8_3:+37219872 | Msa1287300:CDS |
| TCTTTGAGCAATCCGGAGGA+TGG | 0.570627 | 8_3:-37219912 | None:intergenic |
| TTGGAGACCAGGTTCCAGAA+TGG | 0.573302 | 8_3:-37219562 | None:intergenic |
| AATCTCAAAATGGTTGATGG+AGG | 0.583391 | 8_3:-37219969 | None:intergenic |
| CCAGGTTCCAGAATGGTCAC+AGG | 0.585780 | 8_3:-37219555 | None:intergenic |
| ATCTCAAAATGGTTGATGGA+GGG | 0.596026 | 8_3:-37219968 | None:intergenic |
| GTGATGCTTACTTTGGCTGA+AGG | 0.603085 | 8_3:-37219602 | None:intergenic |
| ATCCGGAGGATGGAAAGCCA+AGG | 0.617016 | 8_3:-37219902 | None:intergenic |
| AGAACGCTGCAACTTTCAAG+AGG | 0.622703 | 8_3:-37219776 | None:intergenic |
| CTGTTGTTCTCATAACGAAG+TGG | 0.627481 | 8_3:-37219830 | None:intergenic |
| TCCGGAGGATGGAAAGCCAA+GGG | 0.642508 | 8_3:-37219901 | None:intergenic |
| TTCACGAAGCAAGAGTGAAG+TGG | 0.649891 | 8_3:-37219740 | None:intergenic |
| TATGAGAACAACAGATTGCG+CGG | 0.657146 | 8_3:+37219839 | Msa1287300:CDS |
| ATCACCTGCAAAACACACAA+AGG | 0.676940 | 8_3:+37219620 | Msa1287300:CDS |
| TGAGTCTTTGAGCAATCCGG+AGG | 0.686001 | 8_3:-37219916 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTAATTTTTGATGATC+AGG | + | chr8_3:37219430-37219449 | Msa1287300:intron | 20.0% |
| !!! | TCTTTAATTTTTGATGATCA+GGG | + | chr8_3:37219431-37219450 | Msa1287300:intron | 20.0% |
| !!! | TTCTTTAATTTTTGATGATC+AGG | + | chr8_3:37219430-37219449 | Msa1287300:intron | 20.0% |
| !!! | TCTTTAATTTTTGATGATCA+GGG | + | chr8_3:37219431-37219450 | Msa1287300:intron | 20.0% |
| ! | ATTCTGCTTAGAATTAGAAT+TGG | + | chr8_3:37218663-37218682 | Msa1287300:intron | 25.0% |
| ! | AGAATATCTTGTACACATTT+GGG | - | chr8_3:37218756-37218775 | None:intergenic | 25.0% |
| !!! | ATAGCTACTTTTTCTGAATT+TGG | + | chr8_3:37218913-37218932 | Msa1287300:intron | 25.0% |
| !!! | CTCTTCATTGATAGTTTTTT+GGG | + | chr8_3:37219062-37219081 | Msa1287300:intron | 25.0% |
| ! | TTTATGCAATAAGTGAAGAT+TGG | + | chr8_3:37219277-37219296 | Msa1287300:intron | 25.0% |
| !!! | CTTTAATTTTTGATGATCAG+GGG | + | chr8_3:37219432-37219451 | Msa1287300:intron | 25.0% |
| !! | ATTTTCTTCTCTGTTGTATA+TGG | - | chr8_3:37219500-37219519 | None:intergenic | 25.0% |
| ! | AATGTTAATTACGGTTTGAA+TGG | + | chr8_3:37219803-37219822 | Msa1287300:CDS | 25.0% |
| ! | ATTCTGCTTAGAATTAGAAT+TGG | + | chr8_3:37218663-37218682 | Msa1287300:intron | 25.0% |
| ! | AGAATATCTTGTACACATTT+GGG | - | chr8_3:37218756-37218775 | None:intergenic | 25.0% |
| !!! | ATAGCTACTTTTTCTGAATT+TGG | + | chr8_3:37218913-37218932 | Msa1287300:intron | 25.0% |
| !!! | CTCTTCATTGATAGTTTTTT+GGG | + | chr8_3:37219062-37219081 | Msa1287300:intron | 25.0% |
| ! | TTTATGCAATAAGTGAAGAT+TGG | + | chr8_3:37219277-37219296 | Msa1287300:intron | 25.0% |
| !!! | CTTTAATTTTTGATGATCAG+GGG | + | chr8_3:37219432-37219451 | Msa1287300:intron | 25.0% |
| !! | ATTTTCTTCTCTGTTGTATA+TGG | - | chr8_3:37219500-37219519 | None:intergenic | 25.0% |
| ! | AATGTTAATTACGGTTTGAA+TGG | + | chr8_3:37219803-37219822 | Msa1287300:CDS | 25.0% |
| GAGAATATCTTGTACACATT+TGG | - | chr8_3:37218757-37218776 | None:intergenic | 30.0% | |
| CTATATGCTCATGCTATATA+AGG | - | chr8_3:37218815-37218834 | None:intergenic | 30.0% | |
| ! | TGAAGTCAATTGATAGCTAA+TGG | + | chr8_3:37218883-37218902 | Msa1287300:intron | 30.0% |
| TAAACCTGTTGAAATTTCTG+AGG | - | chr8_3:37219037-37219056 | None:intergenic | 30.0% | |
| !!! | GCTCTTCATTGATAGTTTTT+TGG | + | chr8_3:37219061-37219080 | Msa1287300:intron | 30.0% |
| ! | ATAGAGTAGATGAAGTTGAT+TGG | + | chr8_3:37219107-37219126 | Msa1287300:intron | 30.0% |
| ! | TAGAGTAGATGAAGTTGATT+GGG | + | chr8_3:37219108-37219127 | Msa1287300:intron | 30.0% |
| !!! | ACGAATTTTTGTTGTTCTCA+AGG | + | chr8_3:37219166-37219185 | Msa1287300:intron | 30.0% |
| CTCTATTAACTTTGTACATG+CGG | + | chr8_3:37219306-37219325 | Msa1287300:intron | 30.0% | |
| CTCTTAATAAATTTCGCCTA+AGG | - | chr8_3:37219355-37219374 | None:intergenic | 30.0% | |
| AACAGAGAAGAAAATAGATG+TGG | + | chr8_3:37219505-37219524 | Msa1287300:intron | 30.0% | |
| !! | GTTTTTCAGACAGACAAAAA+TGG | + | chr8_3:37219662-37219681 | Msa1287300:CDS | 30.0% |
| GTGGATGATCTGTTATATAA+TGG | - | chr8_3:37219724-37219743 | None:intergenic | 30.0% | |
| ATGAATCTCAAAATGGTTGA+TGG | - | chr8_3:37219975-37219994 | None:intergenic | 30.0% | |
| GAGAATATCTTGTACACATT+TGG | - | chr8_3:37218757-37218776 | None:intergenic | 30.0% | |
| CTATATGCTCATGCTATATA+AGG | - | chr8_3:37218815-37218834 | None:intergenic | 30.0% | |
| ! | TGAAGTCAATTGATAGCTAA+TGG | + | chr8_3:37218883-37218902 | Msa1287300:intron | 30.0% |
| TAAACCTGTTGAAATTTCTG+AGG | - | chr8_3:37219037-37219056 | None:intergenic | 30.0% | |
| !!! | GCTCTTCATTGATAGTTTTT+TGG | + | chr8_3:37219061-37219080 | Msa1287300:intron | 30.0% |
| ! | ATAGAGTAGATGAAGTTGAT+TGG | + | chr8_3:37219107-37219126 | Msa1287300:intron | 30.0% |
| ! | TAGAGTAGATGAAGTTGATT+GGG | + | chr8_3:37219108-37219127 | Msa1287300:intron | 30.0% |
| !!! | ACGAATTTTTGTTGTTCTCA+AGG | + | chr8_3:37219166-37219185 | Msa1287300:intron | 30.0% |
| CTCTATTAACTTTGTACATG+CGG | + | chr8_3:37219306-37219325 | Msa1287300:intron | 30.0% | |
| CTCTTAATAAATTTCGCCTA+AGG | - | chr8_3:37219355-37219374 | None:intergenic | 30.0% | |
| AACAGAGAAGAAAATAGATG+TGG | + | chr8_3:37219505-37219524 | Msa1287300:intron | 30.0% | |
| !! | GTTTTTCAGACAGACAAAAA+TGG | + | chr8_3:37219662-37219681 | Msa1287300:CDS | 30.0% |
| GTGGATGATCTGTTATATAA+TGG | - | chr8_3:37219724-37219743 | None:intergenic | 30.0% | |
| ATGAATCTCAAAATGGTTGA+TGG | - | chr8_3:37219975-37219994 | None:intergenic | 30.0% | |
| ! | GCTATCAATTGACTTCAAGT+AGG | - | chr8_3:37218880-37218899 | None:intergenic | 35.0% |
| AAGTCCTCAGAAATTTCAAC+AGG | + | chr8_3:37219030-37219049 | Msa1287300:intron | 35.0% | |
| !!! | GTTTTTTGGGATGTGTACTT+TGG | + | chr8_3:37219075-37219094 | Msa1287300:intron | 35.0% |
| !! | TGATGTGTCTAAGACTTTTG+AGG | + | chr8_3:37219329-37219348 | Msa1287300:intron | 35.0% |
| GAAGAAAATAGATGTGGTTG+TGG | + | chr8_3:37219511-37219530 | Msa1287300:intron | 35.0% | |
| AGGTCATGTTAGTTACTACA+AGG | + | chr8_3:37219640-37219659 | Msa1287300:CDS | 35.0% | |
| GTTCTCGCGAATGTTAATTA+CGG | + | chr8_3:37219794-37219813 | Msa1287300:CDS | 35.0% | |
| TGTTATATATACAGCTGGTC+CGG | + | chr8_3:37219877-37219896 | Msa1287300:CDS | 35.0% | |
| GGGTAATTCATAATGGTTTG+AGG | - | chr8_3:37219951-37219970 | None:intergenic | 35.0% | |
| TGATGGAGGGTAATTCATAA+TGG | - | chr8_3:37219958-37219977 | None:intergenic | 35.0% | |
| !! | ATCTCAAAATGGTTGATGGA+GGG | - | chr8_3:37219971-37219990 | None:intergenic | 35.0% |
| !! | AATCTCAAAATGGTTGATGG+AGG | - | chr8_3:37219972-37219991 | None:intergenic | 35.0% |
| ! | GCTATCAATTGACTTCAAGT+AGG | - | chr8_3:37218880-37218899 | None:intergenic | 35.0% |
| AAGTCCTCAGAAATTTCAAC+AGG | + | chr8_3:37219030-37219049 | Msa1287300:intron | 35.0% | |
| !!! | GTTTTTTGGGATGTGTACTT+TGG | + | chr8_3:37219075-37219094 | Msa1287300:intron | 35.0% |
| !! | TGATGTGTCTAAGACTTTTG+AGG | + | chr8_3:37219329-37219348 | Msa1287300:intron | 35.0% |
| GAAGAAAATAGATGTGGTTG+TGG | + | chr8_3:37219511-37219530 | Msa1287300:intron | 35.0% | |
| AGGTCATGTTAGTTACTACA+AGG | + | chr8_3:37219640-37219659 | Msa1287300:CDS | 35.0% | |
| GTTCTCGCGAATGTTAATTA+CGG | + | chr8_3:37219794-37219813 | Msa1287300:CDS | 35.0% | |
| TGTTATATATACAGCTGGTC+CGG | + | chr8_3:37219877-37219896 | Msa1287300:CDS | 35.0% | |
| GGGTAATTCATAATGGTTTG+AGG | - | chr8_3:37219951-37219970 | None:intergenic | 35.0% | |
| TGATGGAGGGTAATTCATAA+TGG | - | chr8_3:37219958-37219977 | None:intergenic | 35.0% | |
| !! | ATCTCAAAATGGTTGATGGA+GGG | - | chr8_3:37219971-37219990 | None:intergenic | 35.0% |
| !! | AATCTCAAAATGGTTGATGG+AGG | - | chr8_3:37219972-37219991 | None:intergenic | 35.0% |
| ACACTTTGTTCCTACCCTAA+TGG | + | chr8_3:37218696-37218715 | Msa1287300:intron | 40.0% | |
| CACTTTGTTCCTACCCTAAT+GGG | + | chr8_3:37218697-37218716 | Msa1287300:intron | 40.0% | |
| ATGAGCATATAGACCAGTAG+TGG | + | chr8_3:37218823-37218842 | Msa1287300:intron | 40.0% | |
| !!! | TCTAAGACTTTTGAGGCCTT+AGG | + | chr8_3:37219336-37219355 | Msa1287300:intron | 40.0% |
| CTTACTTTGGCTGAAGGAAT+TGG | - | chr8_3:37219599-37219618 | None:intergenic | 40.0% | |
| TTTGCAGGTGATGCTTACTT+TGG | - | chr8_3:37219612-37219631 | None:intergenic | 40.0% | |
| ATCACCTGCAAAACACACAA+AGG | + | chr8_3:37219620-37219639 | Msa1287300:CDS | 40.0% | |
| ! | ATGACCTTTGTGTGTTTTGC+AGG | - | chr8_3:37219627-37219646 | None:intergenic | 40.0% |
| TACCTCTATGCACAACTAGA+AGG | + | chr8_3:37219686-37219705 | Msa1287300:CDS | 40.0% | |
| ! | ATCCTTCTAGTTGTGCATAG+AGG | - | chr8_3:37219691-37219710 | None:intergenic | 40.0% |
| CTGTTGTTCTCATAACGAAG+TGG | - | chr8_3:37219833-37219852 | None:intergenic | 40.0% | |
| TATGAGAACAACAGATTGCG+CGG | + | chr8_3:37219839-37219858 | Msa1287300:CDS | 40.0% | |
| GAGGCTGTTATATATACAGC+TGG | + | chr8_3:37219872-37219891 | Msa1287300:CDS | 40.0% | |
| ACACTTTGTTCCTACCCTAA+TGG | + | chr8_3:37218696-37218715 | Msa1287300:intron | 40.0% | |
| CACTTTGTTCCTACCCTAAT+GGG | + | chr8_3:37218697-37218716 | Msa1287300:intron | 40.0% | |
| ATGAGCATATAGACCAGTAG+TGG | + | chr8_3:37218823-37218842 | Msa1287300:intron | 40.0% | |
| !!! | TCTAAGACTTTTGAGGCCTT+AGG | + | chr8_3:37219336-37219355 | Msa1287300:intron | 40.0% |
| CTTACTTTGGCTGAAGGAAT+TGG | - | chr8_3:37219599-37219618 | None:intergenic | 40.0% | |
| TTTGCAGGTGATGCTTACTT+TGG | - | chr8_3:37219612-37219631 | None:intergenic | 40.0% | |
| ATCACCTGCAAAACACACAA+AGG | + | chr8_3:37219620-37219639 | Msa1287300:CDS | 40.0% | |
| ! | ATGACCTTTGTGTGTTTTGC+AGG | - | chr8_3:37219627-37219646 | None:intergenic | 40.0% |
| TACCTCTATGCACAACTAGA+AGG | + | chr8_3:37219686-37219705 | Msa1287300:CDS | 40.0% | |
| ! | ATCCTTCTAGTTGTGCATAG+AGG | - | chr8_3:37219691-37219710 | None:intergenic | 40.0% |
| CTGTTGTTCTCATAACGAAG+TGG | - | chr8_3:37219833-37219852 | None:intergenic | 40.0% | |
| TATGAGAACAACAGATTGCG+CGG | + | chr8_3:37219839-37219858 | Msa1287300:CDS | 40.0% | |
| GAGGCTGTTATATATACAGC+TGG | + | chr8_3:37219872-37219891 | Msa1287300:CDS | 40.0% | |
| ! | TTGTTCCTACCCTAATGGGT+TGG | + | chr8_3:37218701-37218720 | Msa1287300:intron | 45.0% |
| TTAAGCCAACCCATTAGGGT+AGG | - | chr8_3:37218709-37218728 | None:intergenic | 45.0% | |
| !! | ACCCTAATGGGTTGGCTTAA+TGG | + | chr8_3:37218709-37218728 | Msa1287300:intron | 45.0% |
| GCCATTAAGCCAACCCATTA+GGG | - | chr8_3:37218713-37218732 | None:intergenic | 45.0% | |
| TGCCATTAAGCCAACCCATT+AGG | - | chr8_3:37218714-37218733 | None:intergenic | 45.0% | |
| TGGCTTAATGGCACTACACT+AGG | + | chr8_3:37218721-37218740 | Msa1287300:intron | 45.0% | |
| AGCATATAGACCAGTAGTGG+TGG | + | chr8_3:37218826-37218845 | Msa1287300:intron | 45.0% | |
| ATGCTACATACCACCACTAC+TGG | - | chr8_3:37218839-37218858 | None:intergenic | 45.0% | |
| TGTCAAACCTGTGACCATTC+TGG | + | chr8_3:37219548-37219567 | Msa1287300:CDS | 45.0% | |
| TTTGGCTGAAGGAATTGGCT+TGG | - | chr8_3:37219594-37219613 | None:intergenic | 45.0% | |
| GTGATGCTTACTTTGGCTGA+AGG | - | chr8_3:37219605-37219624 | None:intergenic | 45.0% | |
| TTCACGAAGCAAGAGTGAAG+TGG | - | chr8_3:37219743-37219762 | None:intergenic | 45.0% | |
| CTTTCAAGAGGAGACCAAAC+AGG | - | chr8_3:37219767-37219786 | None:intergenic | 45.0% | |
| AGAACGCTGCAACTTTCAAG+AGG | - | chr8_3:37219779-37219798 | None:intergenic | 45.0% | |
| CAGTGAGTCTTTGAGCAATC+CGG | - | chr8_3:37219922-37219941 | None:intergenic | 45.0% | |
| ! | TTGTTCCTACCCTAATGGGT+TGG | + | chr8_3:37218701-37218720 | Msa1287300:intron | 45.0% |
| TTAAGCCAACCCATTAGGGT+AGG | - | chr8_3:37218709-37218728 | None:intergenic | 45.0% | |
| !! | ACCCTAATGGGTTGGCTTAA+TGG | + | chr8_3:37218709-37218728 | Msa1287300:intron | 45.0% |
| GCCATTAAGCCAACCCATTA+GGG | - | chr8_3:37218713-37218732 | None:intergenic | 45.0% | |
| TGCCATTAAGCCAACCCATT+AGG | - | chr8_3:37218714-37218733 | None:intergenic | 45.0% | |
| TGGCTTAATGGCACTACACT+AGG | + | chr8_3:37218721-37218740 | Msa1287300:intron | 45.0% | |
| AGCATATAGACCAGTAGTGG+TGG | + | chr8_3:37218826-37218845 | Msa1287300:intron | 45.0% | |
| ATGCTACATACCACCACTAC+TGG | - | chr8_3:37218839-37218858 | None:intergenic | 45.0% | |
| TGTCAAACCTGTGACCATTC+TGG | + | chr8_3:37219548-37219567 | Msa1287300:CDS | 45.0% | |
| TTTGGCTGAAGGAATTGGCT+TGG | - | chr8_3:37219594-37219613 | None:intergenic | 45.0% | |
| GTGATGCTTACTTTGGCTGA+AGG | - | chr8_3:37219605-37219624 | None:intergenic | 45.0% | |
| TTCACGAAGCAAGAGTGAAG+TGG | - | chr8_3:37219743-37219762 | None:intergenic | 45.0% | |
| CTTTCAAGAGGAGACCAAAC+AGG | - | chr8_3:37219767-37219786 | None:intergenic | 45.0% | |
| AGAACGCTGCAACTTTCAAG+AGG | - | chr8_3:37219779-37219798 | None:intergenic | 45.0% | |
| CAGTGAGTCTTTGAGCAATC+CGG | - | chr8_3:37219922-37219941 | None:intergenic | 45.0% | |
| TTGGAGACCAGGTTCCAGAA+TGG | - | chr8_3:37219565-37219584 | None:intergenic | 50.0% | |
| ! | TCTGGAACCTGGTCTCCAAA+TGG | + | chr8_3:37219566-37219585 | Msa1287300:CDS | 50.0% |
| !! | GGAATTGGCTTGGCTCCATT+TGG | - | chr8_3:37219584-37219603 | None:intergenic | 50.0% |
| CTTGCTTCGTGAAGCCTGTT+TGG | + | chr8_3:37219750-37219769 | Msa1287300:CDS | 50.0% | |
| ACAACAGATTGCGCGGAAGT+AGG | + | chr8_3:37219846-37219865 | Msa1287300:CDS | 50.0% | |
| ATTGCGCGGAAGTAGGTATG+AGG | + | chr8_3:37219853-37219872 | Msa1287300:CDS | 50.0% | |
| TCTTTGAGCAATCCGGAGGA+TGG | - | chr8_3:37219915-37219934 | None:intergenic | 50.0% | |
| TGAGTCTTTGAGCAATCCGG+AGG | - | chr8_3:37219919-37219938 | None:intergenic | 50.0% | |
| TTGGAGACCAGGTTCCAGAA+TGG | - | chr8_3:37219565-37219584 | None:intergenic | 50.0% | |
| ! | TCTGGAACCTGGTCTCCAAA+TGG | + | chr8_3:37219566-37219585 | Msa1287300:CDS | 50.0% |
| !! | GGAATTGGCTTGGCTCCATT+TGG | - | chr8_3:37219584-37219603 | None:intergenic | 50.0% |
| CTTGCTTCGTGAAGCCTGTT+TGG | + | chr8_3:37219750-37219769 | Msa1287300:CDS | 50.0% | |
| ACAACAGATTGCGCGGAAGT+AGG | + | chr8_3:37219846-37219865 | Msa1287300:CDS | 50.0% | |
| ATTGCGCGGAAGTAGGTATG+AGG | + | chr8_3:37219853-37219872 | Msa1287300:CDS | 50.0% | |
| TCTTTGAGCAATCCGGAGGA+TGG | - | chr8_3:37219915-37219934 | None:intergenic | 50.0% | |
| TGAGTCTTTGAGCAATCCGG+AGG | - | chr8_3:37219919-37219938 | None:intergenic | 50.0% | |
| CCAGGTTCCAGAATGGTCAC+AGG | - | chr8_3:37219558-37219577 | None:intergenic | 55.0% | |
| !! | CCTGTGACCATTCTGGAACC+TGG | + | chr8_3:37219555-37219574 | Msa1287300:CDS | 55.0% |
| CTTGGCTCCATTTGGAGACC+AGG | - | chr8_3:37219576-37219595 | None:intergenic | 55.0% | |
| AGGATGGAAAGCCAAGGGAC+CGG | - | chr8_3:37219899-37219918 | None:intergenic | 55.0% | |
| ! | TCCCTTGGCTTTCCATCCTC+CGG | + | chr8_3:37219900-37219919 | Msa1287300:CDS | 55.0% |
| TCCGGAGGATGGAAAGCCAA+GGG | - | chr8_3:37219904-37219923 | None:intergenic | 55.0% | |
| ATCCGGAGGATGGAAAGCCA+AGG | - | chr8_3:37219905-37219924 | None:intergenic | 55.0% | |
| CCAGGTTCCAGAATGGTCAC+AGG | - | chr8_3:37219558-37219577 | None:intergenic | 55.0% | |
| !! | CCTGTGACCATTCTGGAACC+TGG | + | chr8_3:37219555-37219574 | Msa1287300:CDS | 55.0% |
| CTTGGCTCCATTTGGAGACC+AGG | - | chr8_3:37219576-37219595 | None:intergenic | 55.0% | |
| AGGATGGAAAGCCAAGGGAC+CGG | - | chr8_3:37219899-37219918 | None:intergenic | 55.0% | |
| ! | TCCCTTGGCTTTCCATCCTC+CGG | + | chr8_3:37219900-37219919 | Msa1287300:CDS | 55.0% |
| TCCGGAGGATGGAAAGCCAA+GGG | - | chr8_3:37219904-37219923 | None:intergenic | 55.0% | |
| ATCCGGAGGATGGAAAGCCA+AGG | - | chr8_3:37219905-37219924 | None:intergenic | 55.0% | |
| ATACAGCTGGTCCGGTCCCT+TGG | + | chr8_3:37219885-37219904 | Msa1287300:CDS | 60.0% | |
| ATACAGCTGGTCCGGTCCCT+TGG | + | chr8_3:37219885-37219904 | Msa1287300:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 37218528 | 37219997 | 37218528 | ID=Msa1287300;Name=Msa1287300 |
| chr8_3 | mRNA | 37218528 | 37219997 | 37218528 | ID=Msa1287300-mRNA-1;Parent=Msa1287300;Name=Msa1287300-mRNA-1;_AED=0.50;_eAED=0.54;_QI=0|0|0|0.5|0|0|2|0|152 |
| chr8_3 | exon | 37218528 | 37218531 | 37218528 | ID=Msa1287300-mRNA-1:exon:10786;Parent=Msa1287300-mRNA-1 |
| chr8_3 | exon | 37219543 | 37219997 | 37219543 | ID=Msa1287300-mRNA-1:exon:10787;Parent=Msa1287300-mRNA-1 |
| chr8_3 | CDS | 37218528 | 37218531 | 37218528 | ID=Msa1287300-mRNA-1:cds;Parent=Msa1287300-mRNA-1 |
| chr8_3 | CDS | 37219543 | 37219997 | 37219543 | ID=Msa1287300-mRNA-1:cds;Parent=Msa1287300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
