Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290110 | XP_003628629.1 | 95.685 | 394 | 14 | 1 | 1 | 391 | 40 | 433 | 0.0 | 781 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290110 | sp|Q84XG9|ILL1_ORYSI | 54.111 | 377 | 167 | 2 | 12 | 382 | 48 | 424 | 1.04e-146 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290110 | G7LER0 | 95.685 | 394 | 14 | 1 | 1 | 391 | 40 | 433 | 0.0 | 781 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1227600 | Msa1290110 | 0.839619 | 1.421677e-57 | -8.615850e-47 |
| Msa1290110 | Msa1387130 | 0.872531 | 2.961238e-67 | -8.615850e-47 |
| Msa1290110 | Msa1397890 | 0.867382 | 1.426025e-65 | -8.615850e-47 |
| Msa1194460 | Msa1290110 | 0.891140 | 5.210653e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290110 | MtrunA17_Chr8g0364301 | 95.685 | 394 | 14 | 1 | 1 | 391 | 40 | 433 | 0.0 | 781 |
| Msa1290110 | MtrunA17_Chr8g0371561 | 85.640 | 383 | 52 | 1 | 1 | 380 | 47 | 429 | 0.0 | 683 |
| Msa1290110 | MtrunA17_Chr3g0124881 | 54.264 | 387 | 172 | 1 | 1 | 382 | 85 | 471 | 1.37e-154 | 444 |
| Msa1290110 | MtrunA17_Chr2g0330661 | 55.039 | 387 | 169 | 1 | 1 | 382 | 42 | 428 | 1.54e-150 | 433 |
| Msa1290110 | MtrunA17_Chr2g0330721 | 54.522 | 387 | 171 | 1 | 1 | 382 | 47 | 433 | 2.39e-149 | 430 |
| Msa1290110 | MtrunA17_Chr2g0328461 | 54.005 | 387 | 173 | 1 | 1 | 382 | 46 | 432 | 1.63e-145 | 420 |
| Msa1290110 | MtrunA17_Chr2g0330671 | 52.196 | 387 | 180 | 1 | 1 | 382 | 46 | 432 | 2.39e-143 | 415 |
| Msa1290110 | MtrunA17_Chr8g0341471 | 54.233 | 378 | 166 | 3 | 1 | 371 | 39 | 416 | 1.69e-141 | 410 |
| Msa1290110 | MtrunA17_Chr3g0128101 | 49.215 | 382 | 189 | 1 | 12 | 388 | 39 | 420 | 5.22e-133 | 387 |
| Msa1290110 | MtrunA17_Chr8g0364461 | 58.746 | 303 | 98 | 7 | 81 | 380 | 96 | 374 | 3.09e-114 | 339 |
| Msa1290110 | MtrunA17_Chr2g0328481 | 40.453 | 309 | 134 | 2 | 124 | 382 | 4 | 312 | 7.84e-72 | 228 |
| Msa1290110 | MtrunA17_Chr2g0330711 | 67.213 | 122 | 40 | 0 | 1 | 122 | 38 | 159 | 2.92e-53 | 174 |
| Msa1290110 | MtrunA17_Chr2g0328471 | 65.041 | 123 | 43 | 0 | 1 | 123 | 38 | 160 | 4.50e-52 | 172 |
| Msa1290110 | MtrunA17_Chr3g0128121 | 63.415 | 41 | 15 | 0 | 96 | 136 | 1 | 41 | 4.53e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290110 | AT1G51760.1 | 52.196 | 387 | 180 | 1 | 1 | 382 | 36 | 422 | 3.41e-145 | 419 |
| Msa1290110 | AT1G44350.1 | 52.033 | 369 | 177 | 0 | 1 | 369 | 77 | 445 | 8.76e-139 | 404 |
| Msa1290110 | AT5G54140.1 | 51.323 | 378 | 178 | 2 | 11 | 382 | 39 | 416 | 1.15e-138 | 402 |
| Msa1290110 | AT5G56660.1 | 51.938 | 387 | 178 | 3 | 1 | 382 | 39 | 422 | 2.95e-138 | 402 |
| Msa1290110 | AT1G51780.1 | 49.871 | 387 | 189 | 1 | 1 | 382 | 36 | 422 | 5.27e-137 | 398 |
| Msa1290110 | AT5G56650.1 | 51.680 | 387 | 179 | 3 | 1 | 382 | 38 | 421 | 1.94e-135 | 394 |
| Msa1290110 | AT3G02875.1 | 46.954 | 394 | 201 | 2 | 1 | 386 | 40 | 433 | 1.12e-130 | 382 |
| Msa1290110 | AT5G56650.2 | 56.044 | 273 | 113 | 2 | 1 | 268 | 38 | 308 | 1.62e-102 | 306 |
| Msa1290110 | AT3G02875.2 | 50.368 | 272 | 130 | 1 | 1 | 267 | 40 | 311 | 2.87e-93 | 283 |
| Msa1290110 | AT3G02875.3 | 51.575 | 254 | 114 | 3 | 1 | 245 | 40 | 293 | 1.64e-81 | 252 |
Find 89 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCCATTTCACTGTGTT+CGG | 0.270651 | 8_3:+44772120 | None:intergenic |
| GCCCATGTTGCGATGCTTCT+TGG | 0.288317 | 8_3:-44770674 | Msa1290110:CDS |
| CCTCCAAATGTTACTGAATC+AGG | 0.311713 | 8_3:+44770061 | None:intergenic |
| GCATTGTCTTGATCCTGTTT+TGG | 0.317241 | 8_3:-44770317 | Msa1290110:CDS |
| TTCCAACCAGCTGAGGAAAA+AGG | 0.321874 | 8_3:-44770517 | Msa1290110:CDS |
| AGAAATGAAAGATAAATTAA+AGG | 0.322052 | 8_3:-44770633 | Msa1290110:intron |
| AACTCCTCATATCCAAGTTC+TGG | 0.329116 | 8_3:+44772069 | None:intergenic |
| CTAATTATGCTTCAGGAGTT+CGG | 0.339989 | 8_3:-44767788 | Msa1290110:three_prime_UTR |
| ATGGAAGCTAATTATGCTTC+AGG | 0.340847 | 8_3:-44767795 | Msa1290110:three_prime_UTR |
| ACTGCAGAGGTTGAGTTCTT+TGG | 0.343440 | 8_3:-44768314 | Msa1290110:CDS |
| GTTGTAGCTAAAATCGGTTC+TGG | 0.344361 | 8_3:-44771970 | Msa1290110:CDS |
| ATTCCTGATTCAGTAACATT+TGG | 0.347097 | 8_3:-44770064 | Msa1290110:CDS |
| CAGTGGCATGTTGCTAAAAC+TGG | 0.347945 | 8_3:-44771994 | Msa1290110:CDS |
| TCATCCATTTCACTGTGTTC+GGG | 0.362128 | 8_3:+44772121 | None:intergenic |
| AGGACTATGAGCTGAATATA+TGG | 0.368562 | 8_3:+44768091 | None:intergenic |
| TAATTATGCTTCAGGAGTTC+GGG | 0.378638 | 8_3:-44767787 | None:intergenic |
| TCAGCTCTAAGAGCAATAAA+AGG | 0.385249 | 8_3:+44771940 | None:intergenic |
| AATTAGCCCAACATATTAGA+TGG | 0.387344 | 8_3:-44767814 | Msa1290110:three_prime_UTR |
| ATCCAAGTTCTGGATATTCA+TGG | 0.393550 | 8_3:+44772079 | None:intergenic |
| GCCAACAGGAACTTGTTGAT+TGG | 0.403152 | 8_3:-44770745 | Msa1290110:intron |
| CTCTCATCATTTGTAGTTGG+AGG | 0.409256 | 8_3:+44768272 | None:intergenic |
| GACATTGAAGCGGCCAAAAC+AGG | 0.415065 | 8_3:+44770304 | None:intergenic |
| GATCATAAGAGCAAAGTAGA+TGG | 0.419049 | 8_3:-44770722 | Msa1290110:CDS |
| ATTCTCTCATCATTTGTAGT+TGG | 0.422375 | 8_3:+44768269 | None:intergenic |
| AGGCGTGAGCTTGACAAGTT+AGG | 0.426458 | 8_3:-44772027 | Msa1290110:CDS |
| CCAACAGGAACTTGTTGATT+GGG | 0.431956 | 8_3:-44770744 | Msa1290110:intron |
| GGCGTTGTTGCATCACGGCC+GGG | 0.434174 | 8_3:-44770406 | Msa1290110:CDS |
| ACTGGAGTTGTAGCTAAAAT+CGG | 0.439655 | 8_3:-44771976 | Msa1290110:CDS |
| GCAGGTCCTTTCTGTGGCAA+TGG | 0.442153 | 8_3:-44770113 | Msa1290110:intron |
| TTTGTAGTTGGAGGGATTGT+TGG | 0.442878 | 8_3:+44768281 | None:intergenic |
| CCTGATTCAGTAACATTTGG+AGG | 0.445538 | 8_3:-44770061 | Msa1290110:CDS |
| AGGCGTTGTTGCATCACGGC+CGG | 0.446779 | 8_3:-44770407 | Msa1290110:CDS |
| TAGCTTCCATCTAATATGTT+GGG | 0.447610 | 8_3:+44767808 | None:intergenic |
| CAAGCATCAAGTATGATTGT+TGG | 0.450241 | 8_3:-44768230 | Msa1290110:CDS |
| CCGTGATGCAACAACGCCTA+AGG | 0.452190 | 8_3:+44770411 | None:intergenic |
| ACAACCCGAACACAGTGAAA+TGG | 0.456880 | 8_3:-44772125 | Msa1290110:CDS |
| GGTGGATCCTTTAGATTCCC+AGG | 0.458247 | 8_3:-44770248 | Msa1290110:intron |
| ATCCATGAATATCCAGAACT+TGG | 0.462489 | 8_3:-44772081 | Msa1290110:CDS |
| GCTTGCAAAACATTGTTTCA+AGG | 0.463506 | 8_3:-44770273 | Msa1290110:CDS |
| CATGGATGCTTTGCCAATCC+AGG | 0.471027 | 8_3:-44771917 | Msa1290110:intron |
| TTAGCTTCCATCTAATATGT+TGG | 0.474036 | 8_3:+44767807 | None:intergenic |
| CAGAAGAGAAATTATAATAG+AGG | 0.475175 | 8_3:-44767935 | Msa1290110:three_prime_UTR |
| GCGTTGTTGCATCACGGCCG+GGG | 0.478016 | 8_3:-44770405 | Msa1290110:CDS |
| GGTATTCACAATGAGAAGGT+TGG | 0.489119 | 8_3:-44768116 | Msa1290110:CDS |
| GCTTCAAAGCAAAGATCAAA+GGG | 0.489839 | 8_3:-44770360 | Msa1290110:CDS |
| AAACATTGTTTCAAGGGAGG+TGG | 0.494015 | 8_3:-44770266 | Msa1290110:CDS |
| CTTGCAAAACATTGTTTCAA+GGG | 0.503037 | 8_3:-44770272 | Msa1290110:CDS |
| CACCAAGAAGCATCGCAACA+TGG | 0.504864 | 8_3:+44770672 | None:intergenic |
| TCTCATTGTGAATACCTAAG+AGG | 0.507391 | 8_3:+44768123 | None:intergenic |
| TCATGACAAGTTCTGTCATA+AGG | 0.509424 | 8_3:-44772047 | Msa1290110:CDS |
| TTGATGCTTGTCTTCCAAGT+TGG | 0.517245 | 8_3:+44768243 | None:intergenic |
| GCATGTATCGCAGCACCAAT+GGG | 0.522841 | 8_3:+44768041 | None:intergenic |
| TCTCATCATTTGTAGTTGGA+GGG | 0.526258 | 8_3:+44768273 | None:intergenic |
| AATAGTAGTTTGTAATAGCA+AGG | 0.528710 | 8_3:+44767894 | None:intergenic |
| ATATCCAGAACTTGGATATG+AGG | 0.531022 | 8_3:-44772073 | Msa1290110:CDS |
| GACTCAACCTGGGAATCTAA+AGG | 0.533267 | 8_3:+44770241 | None:intergenic |
| AGCTTCAAAGCAAAGATCAA+AGG | 0.536414 | 8_3:-44770361 | Msa1290110:CDS |
| GATGAAGATGTTCTTCCCAT+TGG | 0.537284 | 8_3:-44768056 | Msa1290110:CDS |
| TATTGCTCTTAGAGCTGACA+TGG | 0.551848 | 8_3:-44771935 | Msa1290110:CDS |
| AAAATCTTCACTCGCTGTGT+AGG | 0.554083 | 8_3:+44768181 | None:intergenic |
| TGCATGTATCGCAGCACCAA+TGG | 0.554871 | 8_3:+44768040 | None:intergenic |
| ATCATAAGAGCAAAGTAGAT+GGG | 0.556957 | 8_3:-44770721 | Msa1290110:CDS |
| TCTTCACTCGCTGTGTAGGT+TGG | 0.559495 | 8_3:+44768185 | None:intergenic |
| CCTTAGGCGTTGTTGCATCA+CGG | 0.566026 | 8_3:-44770411 | Msa1290110:CDS |
| GATGAGAGAATACACCAACT+TGG | 0.573593 | 8_3:-44768257 | Msa1290110:CDS |
| CTTAGGTATTCACAATGAGA+AGG | 0.574770 | 8_3:-44768120 | Msa1290110:CDS |
| AAAAGAGCTTCAATGCACTA+AGG | 0.580878 | 8_3:-44770018 | Msa1290110:CDS |
| AATTCTGCAGGTCCTTTCTG+TGG | 0.585555 | 8_3:-44770119 | Msa1290110:intron |
| AGTGGACCATTGCCACAGAA+AGG | 0.591959 | 8_3:+44770107 | None:intergenic |
| TCTTATATTCCAACCAGCTG+AGG | 0.592807 | 8_3:-44770524 | Msa1290110:CDS |
| GCAAAACATTGTTTCAAGGG+AGG | 0.595201 | 8_3:-44770269 | Msa1290110:CDS |
| GTACTATTAAATATCTCAGA+AGG | 0.601606 | 8_3:-44767854 | Msa1290110:three_prime_UTR |
| CGTGATGCAACAACGCCTAA+GGG | 0.604454 | 8_3:+44770412 | None:intergenic |
| GCTTCAATGCACTAAGGCAA+AGG | 0.606705 | 8_3:-44770012 | Msa1290110:CDS |
| TTAGCGACACAGTATCCCTT+AGG | 0.606827 | 8_3:-44770427 | Msa1290110:CDS |
| CGTTGTTGCATCACGGCCGG+GGG | 0.609021 | 8_3:-44770404 | Msa1290110:CDS |
| AAGGGCAAGCAAAAGTACAT+AGG | 0.610471 | 8_3:-44768340 | Msa1290110:CDS |
| ACCAAGAAGCATCGCAACAT+GGG | 0.617744 | 8_3:+44770673 | None:intergenic |
| GCTCTAAGAGCAATAAAAGG+AGG | 0.618553 | 8_3:+44771943 | None:intergenic |
| TGAGATATTTAATAGTACAA+TGG | 0.618607 | 8_3:+44767859 | None:intergenic |
| AGTACATAGGTGCACTGCAG+AGG | 0.622649 | 8_3:-44768327 | Msa1290110:CDS |
| GCTAATCACCGACATTGAAG+CGG | 0.632072 | 8_3:+44770294 | None:intergenic |
| AAATGTGCTTGAAGATGTAG+TGG | 0.633529 | 8_3:-44770467 | Msa1290110:CDS |
| TTCAAAGCAAAGATCAAAGG+GGG | 0.633646 | 8_3:-44770358 | Msa1290110:intron |
| ACTAAGGCAAAGGATAGAAG+AGG | 0.641015 | 8_3:-44770002 | Msa1290110:intron |
| TCTTCATCAATAAAATAGTG+AGG | 0.665866 | 8_3:+44768071 | None:intergenic |
| AGTTAGGAGTATCTTACCAG+TGG | 0.686255 | 8_3:-44772011 | Msa1290110:CDS |
| GTTCATGAGAAGACTCTGAG+TGG | 0.725565 | 8_3:+44770089 | None:intergenic |
| CTTCAAAGCAAAGATCAAAG+GGG | 0.730699 | 8_3:-44770359 | Msa1290110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACAGTAAAATTA+AGG | - | chr8_3:44768599-44768618 | Msa1290110:intron | 10.0% |
| !!! | ATGTCAATTATTTTTTATTA+AGG | - | chr8_3:44768694-44768713 | Msa1290110:intron | 10.0% |
| !! | AATAAATATATTCTTTCTTA+AGG | - | chr8_3:44770353-44770372 | Msa1290110:intron | 10.0% |
| !! | TTACTATTTATTACTCATAT+AGG | - | chr8_3:44768439-44768458 | Msa1290110:intron | 15.0% |
| !!! | TTATTTTTTATTAAGGAAAG+TGG | - | chr8_3:44768701-44768720 | Msa1290110:intron | 15.0% |
| !! | TAGTTTAATATTACCATTTA+CGG | - | chr8_3:44769064-44769083 | Msa1290110:intron | 15.0% |
| !! | AGAAATGAAAGATAAATTAA+AGG | - | chr8_3:44769334-44769353 | Msa1290110:intron | 15.0% |
| !!! | ACAATTTTTCAAATTGTTAT+TGG | - | chr8_3:44771435-44771454 | Msa1290110:intron | 15.0% |
| !!! | GTATTTTTATTTTTGTTACC+TGG | + | chr8_3:44768071-44768090 | None:intergenic | 20.0% |
| !!! | TATAATTTTTGCAAAAATCG+CGG | - | chr8_3:44768259-44768278 | Msa1290110:CDS | 20.0% |
| !! | TGATCTTTGTAAAAAATTTG+AGG | - | chr8_3:44768386-44768405 | Msa1290110:intron | 20.0% |
| !! | AGGTACAATATTAATAGAAA+AGG | + | chr8_3:44768755-44768774 | None:intergenic | 20.0% |
| !! | AAAAACAAATCAGATGTTAT+AGG | + | chr8_3:44768973-44768992 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTATATTGCAAGT+TGG | - | chr8_3:44768984-44769003 | Msa1290110:intron | 20.0% |
| !! | AAGATAAATTAAAGGTAAAG+TGG | - | chr8_3:44769342-44769361 | Msa1290110:intron | 20.0% |
| !! | TTGATATTGTTGAAAATTAC+AGG | + | chr8_3:44770109-44770128 | None:intergenic | 20.0% |
| !!! | TGTAATTTTCAACAATATCA+AGG | - | chr8_3:44770108-44770127 | Msa1290110:CDS | 20.0% |
| !! | ATCTGTAAATATCAAAACAA+TGG | + | chr8_3:44770788-44770807 | None:intergenic | 20.0% |
| !!! | AGTCTATAATTTATAGGTTT+TGG | - | chr8_3:44771234-44771253 | Msa1290110:intron | 20.0% |
| !! | TGAGATATTTAATAGTACAA+TGG | + | chr8_3:44772111-44772130 | None:intergenic | 20.0% |
| !!! | TTTATTTTTGTTACCTGGAT+TGG | + | chr8_3:44768066-44768085 | None:intergenic | 25.0% |
| ! | ATTTGAGGAAAAAAATGAGA+AGG | - | chr8_3:44768401-44768420 | Msa1290110:intron | 25.0% |
| ! | TTCTATTAATATTGTACCTG+AGG | - | chr8_3:44768756-44768775 | Msa1290110:intron | 25.0% |
| !! | TCTTTTGTAATACCAATTCA+TGG | - | chr8_3:44768797-44768816 | Msa1290110:intron | 25.0% |
| !!! | TTAATCTTCTAGGACTAATT+TGG | - | chr8_3:44769128-44769147 | Msa1290110:intron | 25.0% |
| ! | ATATTTCTTGGAAGCAATTA+CGG | + | chr8_3:44769154-44769173 | None:intergenic | 25.0% |
| ! | ACTTATTGTGCTATATTTCT+TGG | + | chr8_3:44769166-44769185 | None:intergenic | 25.0% |
| ! | AATTAAAGGTAAAGTGGAAT+TGG | - | chr8_3:44769348-44769367 | Msa1290110:intron | 25.0% |
| ! | AGAAATAATGTGTGAAAACT+TGG | + | chr8_3:44769773-44769792 | None:intergenic | 25.0% |
| ! | TGAAAATTACAGGAAAAACA+CGG | + | chr8_3:44770099-44770118 | None:intergenic | 25.0% |
| ! | TTGATATTTACAGATTTCGA+TGG | - | chr8_3:44770793-44770812 | Msa1290110:intron | 25.0% |
| !! | TAACTGAATCACAAACATTT+TGG | - | chr8_3:44770980-44770999 | Msa1290110:intron | 25.0% |
| ! | AAGTGCAGTCTATAATTTAT+AGG | - | chr8_3:44771228-44771247 | Msa1290110:intron | 25.0% |
| !!! | CTATAATTTATAGGTTTTGG+AGG | - | chr8_3:44771237-44771256 | Msa1290110:intron | 25.0% |
| ! | ATGTTGTGATTCTTGATATT+GGG | + | chr8_3:44771314-44771333 | None:intergenic | 25.0% |
| ! | TATGTTGTGATTCTTGATAT+TGG | + | chr8_3:44771315-44771334 | None:intergenic | 25.0% |
| !!! | ATAATGAAGGCTCTAAATTA+CGG | + | chr8_3:44771343-44771362 | None:intergenic | 25.0% |
| !!! | TTTGTTTGACTTTTTTGTAC+AGG | - | chr8_3:44771598-44771617 | Msa1290110:intron | 25.0% |
| !!! | TTTTTTGTACAGGTTATCAA+AGG | - | chr8_3:44771608-44771627 | Msa1290110:intron | 25.0% |
| !! | TTTTTGTACAGGTTATCAAA+GGG | - | chr8_3:44771609-44771628 | Msa1290110:intron | 25.0% |
| !! | TGAAGATTTTGCATTTTACT+TGG | - | chr8_3:44771799-44771818 | Msa1290110:intron | 25.0% |
| ! | TCTTCATCAATAAAATAGTG+AGG | + | chr8_3:44771899-44771918 | None:intergenic | 25.0% |
| ! | CAGAAGAGAAATTATAATAG+AGG | - | chr8_3:44772032-44772051 | Msa1290110:CDS | 25.0% |
| !! | AATAGTAGTTTGTAATAGCA+AGG | + | chr8_3:44772076-44772095 | None:intergenic | 25.0% |
| ! | GTACTATTAAATATCTCAGA+AGG | - | chr8_3:44772113-44772132 | Msa1290110:CDS | 25.0% |
| ACTGAAAAATCAGATTCTTG+AGG | - | chr8_3:44767813-44767832 | Msa1290110:three_prime_UTR | 30.0% | |
| ! | AACACAAGAAAGTGAAGTTT+TGG | + | chr8_3:44768100-44768119 | None:intergenic | 30.0% |
| AAACTTCAACAAAATCACCA+TGG | + | chr8_3:44768234-44768253 | None:intergenic | 30.0% | |
| CAAAACATGCAGAAACATTA+TGG | - | chr8_3:44768317-44768336 | Msa1290110:CDS | 30.0% | |
| GCATGTTTGATATAATGCTA+TGG | - | chr8_3:44768346-44768365 | Msa1290110:CDS | 30.0% | |
| GTATGAGAAAAGATGAAAAG+TGG | - | chr8_3:44768474-44768493 | Msa1290110:intron | 30.0% | |
| TGTCATCATTCTTCATAAGT+AGG | - | chr8_3:44768513-44768532 | Msa1290110:intron | 30.0% | |
| GTCATCATTCTTCATAAGTA+GGG | - | chr8_3:44768514-44768533 | Msa1290110:intron | 30.0% | |
| !! | AATTGAAGAGTTTCAAGTTG+TGG | - | chr8_3:44768553-44768572 | Msa1290110:intron | 30.0% |
| !! | ATTGAAGAGTTTCAAGTTGT+GGG | - | chr8_3:44768554-44768573 | Msa1290110:intron | 30.0% |
| ACAAACTTCAGAATTAATGC+AGG | + | chr8_3:44768627-44768646 | None:intergenic | 30.0% | |
| TCTTGTCATGTAATTGAGAA+TGG | - | chr8_3:44768646-44768665 | Msa1290110:intron | 30.0% | |
| ! | AATTAGCTGATTTAATCCTC+AGG | + | chr8_3:44768775-44768794 | None:intergenic | 30.0% |
| ! | CGAAATTTGAAACCATGAAT+TGG | + | chr8_3:44768812-44768831 | None:intergenic | 30.0% |
| TTATATTGAGGATGCAAATG+CGG | + | chr8_3:44768843-44768862 | None:intergenic | 30.0% | |
| CCTCAAAATCGTTTATATTG+AGG | + | chr8_3:44768855-44768874 | None:intergenic | 30.0% | |
| ! | CCTCAATATAAACGATTTTG+AGG | - | chr8_3:44768852-44768871 | Msa1290110:intron | 30.0% |
| ATGTTATAGGACATAGTAAG+AGG | + | chr8_3:44768960-44768979 | None:intergenic | 30.0% | |
| TACCAGATTAAGGATTTGAT+GGG | + | chr8_3:44769194-44769213 | None:intergenic | 30.0% | |
| ATACCAGATTAAGGATTTGA+TGG | + | chr8_3:44769195-44769214 | None:intergenic | 30.0% | |
| ATCATAAGAGCAAAGTAGAT+GGG | - | chr8_3:44769246-44769265 | Msa1290110:intron | 30.0% | |
| !!! | GTGAAGGATTTAGTTTTCAA+TGG | + | chr8_3:44769406-44769425 | None:intergenic | 30.0% |
| CTTGCAAAACATTGTTTCAA+GGG | - | chr8_3:44769695-44769714 | Msa1290110:intron | 30.0% | |
| ATTCCTGATTCAGTAACATT+TGG | - | chr8_3:44769903-44769922 | Msa1290110:intron | 30.0% | |
| TTATAGTCATGATGTAGTTG+TGG | + | chr8_3:44770061-44770080 | None:intergenic | 30.0% | |
| CTACATCATGACTATAATTG+AGG | - | chr8_3:44770064-44770083 | Msa1290110:CDS | 30.0% | |
| GACTATAATTGAGGTTGTAT+CGG | - | chr8_3:44770073-44770092 | Msa1290110:CDS | 30.0% | |
| ! | CAGTTTACAGTAAAAGGTTT+TGG | - | chr8_3:44770169-44770188 | Msa1290110:intron | 30.0% |
| !! | GAAAGGTATTTGATTGAAGA+TGG | + | chr8_3:44770421-44770440 | None:intergenic | 30.0% |
| !! | CAGTTTTAGTACAAGAAGAA+AGG | + | chr8_3:44770438-44770457 | None:intergenic | 30.0% |
| ATGTGCAAAGTAGACATAAA+AGG | + | chr8_3:44770555-44770574 | None:intergenic | 30.0% | |
| AAATATCAAAACAATGGCGA+CGG | + | chr8_3:44770782-44770801 | None:intergenic | 30.0% | |
| !! | TGAATCACAAACATTTTGGT+TGG | - | chr8_3:44770984-44771003 | Msa1290110:intron | 30.0% |
| ! | GTTAATCTCCTCCTTTTAAT+AGG | - | chr8_3:44771108-44771127 | Msa1290110:intron | 30.0% |
| CATTTGACAGTACTTTATCA+AGG | - | chr8_3:44771175-44771194 | Msa1290110:intron | 30.0% | |
| TAAAACCATGACAACAATTG+TGG | + | chr8_3:44771208-44771227 | None:intergenic | 30.0% | |
| CTTGATATTGGGATAAAGTT+CGG | + | chr8_3:44771303-44771322 | None:intergenic | 30.0% | |
| TACGTATGTGACAATAATGA+AGG | + | chr8_3:44771356-44771375 | None:intergenic | 30.0% | |
| ATTGTTTGTAACACATGTAC+CGG | + | chr8_3:44771420-44771439 | None:intergenic | 30.0% | |
| ATTCTCTCATCATTTGTAGT+TGG | + | chr8_3:44771701-44771720 | None:intergenic | 30.0% | |
| AATTAGCCCAACATATTAGA+TGG | - | chr8_3:44772153-44772172 | Msa1290110:intron | 30.0% | |
| TAGCTTCCATCTAATATGTT+GGG | + | chr8_3:44772162-44772181 | None:intergenic | 30.0% | |
| TTAGCTTCCATCTAATATGT+TGG | + | chr8_3:44772163-44772182 | None:intergenic | 30.0% | |
| TTCATCCATTTCACTGTGTT+CGG | + | chr8_3:44767850-44767869 | None:intergenic | 35.0% | |
| ATCCATGAATATCCAGAACT+TGG | - | chr8_3:44767886-44767905 | Msa1290110:three_prime_UTR | 35.0% | |
| !! | ATCCAAGTTCTGGATATTCA+TGG | + | chr8_3:44767891-44767910 | None:intergenic | 35.0% |
| ATATCCAGAACTTGGATATG+AGG | - | chr8_3:44767894-44767913 | Msa1290110:three_prime_UTR | 35.0% | |
| TCATGACAAGTTCTGTCATA+AGG | - | chr8_3:44767920-44767939 | Msa1290110:three_prime_UTR | 35.0% | |
| ACTGGAGTTGTAGCTAAAAT+CGG | - | chr8_3:44767991-44768010 | Msa1290110:exon | 35.0% | |
| !! | TCAGCTCTAAGAGCAATAAA+AGG | + | chr8_3:44768030-44768049 | None:intergenic | 35.0% |
| ! | CTTTGAGTTTGTCGAAATCA+AGG | - | chr8_3:44768206-44768225 | Msa1290110:CDS | 35.0% |
| !! | TTGAAGAGTTTCAAGTTGTG+GGG | - | chr8_3:44768555-44768574 | Msa1290110:intron | 35.0% |
| ATAAGCTCATTGATGAGTGA+AGG | - | chr8_3:44769033-44769052 | Msa1290110:intron | 35.0% | |
| TAAGCTCATTGATGAGTGAA+GGG | - | chr8_3:44769034-44769053 | Msa1290110:intron | 35.0% | |
| GTTGTACTTTCAACCGTAAA+TGG | + | chr8_3:44769080-44769099 | None:intergenic | 35.0% | |
| CTTGCTTAAGCTAAGTATAC+AGG | - | chr8_3:44769101-44769120 | Msa1290110:intron | 35.0% | |
| TACAGGTGGTTTAATCTTCT+AGG | - | chr8_3:44769118-44769137 | Msa1290110:intron | 35.0% | |
| GATTAAGGATTTGATGGGAA+CGG | + | chr8_3:44769189-44769208 | None:intergenic | 35.0% | |
| TTCCCATCAAATCCTTAATC+TGG | - | chr8_3:44769189-44769208 | Msa1290110:intron | 35.0% | |
| GATCATAAGAGCAAAGTAGA+TGG | - | chr8_3:44769245-44769264 | Msa1290110:intron | 35.0% | |
| AAACTAAATCCTTCACATGC+AGG | - | chr8_3:44769410-44769429 | Msa1290110:intron | 35.0% | |
| ! | CATCTTCAAGCACATTTTCT+TGG | + | chr8_3:44769497-44769516 | None:intergenic | 35.0% |
| AAATGTGCTTGAAGATGTAG+TGG | - | chr8_3:44769500-44769519 | Msa1290110:intron | 35.0% | |
| !! | GAAGATGTAGTGGCTATTTT+CGG | - | chr8_3:44769510-44769529 | Msa1290110:intron | 35.0% |
| AGCTTCAAAGCAAAGATCAA+AGG | - | chr8_3:44769606-44769625 | Msa1290110:intron | 35.0% | |
| GCTTCAAAGCAAAGATCAAA+GGG | - | chr8_3:44769607-44769626 | Msa1290110:intron | 35.0% | |
| CTTCAAAGCAAAGATCAAAG+GGG | - | chr8_3:44769608-44769627 | Msa1290110:intron | 35.0% | |
| TTCAAAGCAAAGATCAAAGG+GGG | - | chr8_3:44769609-44769628 | Msa1290110:intron | 35.0% | |
| GCTTGCAAAACATTGTTTCA+AGG | - | chr8_3:44769694-44769713 | Msa1290110:intron | 35.0% | |
| TTTAGTGTTTGACTCAACCT+GGG | + | chr8_3:44769739-44769758 | None:intergenic | 35.0% | |
| ! | TTTTAGTGTTTGACTCAACC+TGG | + | chr8_3:44769740-44769759 | None:intergenic | 35.0% |
| CATATGAAGCTAAATTCTGC+AGG | - | chr8_3:44769836-44769855 | Msa1290110:intron | 35.0% | |
| AAAAGAGCTTCAATGCACTA+AGG | - | chr8_3:44769949-44769968 | Msa1290110:intron | 35.0% | |
| TTGTCATAGTCTGAAGATCA+AGG | - | chr8_3:44770023-44770042 | Msa1290110:CDS | 35.0% | |
| ! | TAGTCTGAAGATCAAGGTTT+TGG | - | chr8_3:44770029-44770048 | Msa1290110:CDS | 35.0% |
| AGAGTGCAGTTTACAGTAAA+AGG | - | chr8_3:44770163-44770182 | Msa1290110:intron | 35.0% | |
| CTATATCATTGAGACACCAT+TGG | + | chr8_3:44770204-44770223 | None:intergenic | 35.0% | |
| TCCAAAGAATCAACATCACA+AGG | - | chr8_3:44770667-44770686 | Msa1290110:CDS | 35.0% | |
| !! | ACCTTGTGATGTTGATTCTT+TGG | + | chr8_3:44770671-44770690 | None:intergenic | 35.0% |
| !! | TGATGAAAAAGGCATTCTCA+AGG | + | chr8_3:44770896-44770915 | None:intergenic | 35.0% |
| GTGGAAGAGAATGATGAAAA+AGG | + | chr8_3:44770907-44770926 | None:intergenic | 35.0% | |
| GAGAATTCTTCAGTAGGTTT+GGG | + | chr8_3:44771054-44771073 | None:intergenic | 35.0% | |
| TGAGAATTCTTCAGTAGGTT+TGG | + | chr8_3:44771055-44771074 | None:intergenic | 35.0% | |
| ATCACTGAGAATTCTTCAGT+AGG | + | chr8_3:44771060-44771079 | None:intergenic | 35.0% | |
| GATGCAGTGTTCCTATTAAA+AGG | + | chr8_3:44771122-44771141 | None:intergenic | 35.0% | |
| CATAACCACAATTGTTGTCA+TGG | - | chr8_3:44771200-44771219 | Msa1290110:intron | 35.0% | |
| AGCAGTGACACTTCAAATTA+TGG | - | chr8_3:44771375-44771394 | Msa1290110:intron | 35.0% | |
| GCAGTGACACTTCAAATTAT+GGG | - | chr8_3:44771376-44771395 | Msa1290110:intron | 35.0% | |
| ACACACACAATCATCAAAGA+AGG | - | chr8_3:44771540-44771559 | Msa1290110:intron | 35.0% | |
| ACACAATCATCAAAGAAGGA+AGG | - | chr8_3:44771544-44771563 | Msa1290110:intron | 35.0% | |
| TCTCATCATTTGTAGTTGGA+GGG | + | chr8_3:44771697-44771716 | None:intergenic | 35.0% | |
| CAAGCATCAAGTATGATTGT+TGG | - | chr8_3:44771737-44771756 | Msa1290110:intron | 35.0% | |
| !!! | TTTTACTTGGAAAAAGTGCC+CGG | - | chr8_3:44771812-44771831 | Msa1290110:intron | 35.0% |
| TCTCATTGTGAATACCTAAG+AGG | + | chr8_3:44771847-44771866 | None:intergenic | 35.0% | |
| CTTAGGTATTCACAATGAGA+AGG | - | chr8_3:44771847-44771866 | Msa1290110:intron | 35.0% | |
| AGGACTATGAGCTGAATATA+TGG | + | chr8_3:44771879-44771898 | None:intergenic | 35.0% | |
| ATGGAAGCTAATTATGCTTC+AGG | - | chr8_3:44772172-44772191 | Msa1290110:intron | 35.0% | |
| TCATCCATTTCACTGTGTTC+GGG | + | chr8_3:44767849-44767868 | None:intergenic | 40.0% | |
| AACTCCTCATATCCAAGTTC+TGG | + | chr8_3:44767901-44767920 | None:intergenic | 40.0% | |
| !! | AGTTAGGAGTATCTTACCAG+TGG | - | chr8_3:44767956-44767975 | Msa1290110:three_prime_UTR | 40.0% |
| ! | GTTGTAGCTAAAATCGGTTC+TGG | - | chr8_3:44767997-44768016 | Msa1290110:CDS | 40.0% |
| !! | GCTCTAAGAGCAATAAAAGG+AGG | + | chr8_3:44768027-44768046 | None:intergenic | 40.0% |
| TATTGCTCTTAGAGCTGACA+TGG | - | chr8_3:44768032-44768051 | Msa1290110:CDS | 40.0% | |
| CATAAGTAGGGTAGTAGTGT+TGG | - | chr8_3:44768526-44768545 | Msa1290110:intron | 40.0% | |
| GAGAATGGAGAAAGAAACAG+TGG | - | chr8_3:44768661-44768680 | Msa1290110:intron | 40.0% | |
| AAGCTCATTGATGAGTGAAG+GGG | - | chr8_3:44769035-44769054 | Msa1290110:intron | 40.0% | |
| GCTTAAGCTAAGTATACAGG+TGG | - | chr8_3:44769104-44769123 | Msa1290110:intron | 40.0% | |
| ! | GCAGGAAGTATACCAGATTA+AGG | + | chr8_3:44769204-44769223 | None:intergenic | 40.0% |
| !! | CCAACAGGAACTTGTTGATT+GGG | - | chr8_3:44769223-44769242 | Msa1290110:intron | 40.0% |
| TCTTATATTCCAACCAGCTG+AGG | - | chr8_3:44769443-44769462 | Msa1290110:intron | 40.0% | |
| ! | GCATTGTCTTGATCCTGTTT+TGG | - | chr8_3:44769650-44769669 | Msa1290110:intron | 40.0% |
| GCAAAACATTGTTTCAAGGG+AGG | - | chr8_3:44769698-44769717 | Msa1290110:intron | 40.0% | |
| AAACATTGTTTCAAGGGAGG+TGG | - | chr8_3:44769701-44769720 | Msa1290110:intron | 40.0% | |
| CCTCCAAATGTTACTGAATC+AGG | + | chr8_3:44769909-44769928 | None:intergenic | 40.0% | |
| CCTGATTCAGTAACATTTGG+AGG | - | chr8_3:44769906-44769925 | Msa1290110:intron | 40.0% | |
| ACTAAGGCAAAGGATAGAAG+AGG | - | chr8_3:44769965-44769984 | Msa1290110:intron | 40.0% | |
| TTGATTGAAGATGGCAGTGT+TGG | + | chr8_3:44770412-44770431 | None:intergenic | 40.0% | |
| GTCGTCATTGTTCAGATCAT+GGG | + | chr8_3:44770465-44770484 | None:intergenic | 40.0% | |
| ATCGTTGACAGTTAGTGCAT+TGG | + | chr8_3:44770602-44770621 | None:intergenic | 40.0% | |
| TGTCTCCTCGGATTTATATC+AGG | - | chr8_3:44770637-44770656 | Msa1290110:CDS | 40.0% | |
| AACAGCCTGATATAAATCCG+AGG | + | chr8_3:44770645-44770664 | None:intergenic | 40.0% | |
| ! | ACATCACAAGGTGTTCTCAA+AGG | - | chr8_3:44770679-44770698 | Msa1290110:CDS | 40.0% |
| GACATGAATCATTTGCCTCT+AGG | - | chr8_3:44770734-44770753 | Msa1290110:CDS | 40.0% | |
| TACAGATTTCGATGGAACCT+TGG | - | chr8_3:44770801-44770820 | Msa1290110:intron | 40.0% | |
| ACAGATTTCGATGGAACCTT+GGG | - | chr8_3:44770802-44770821 | Msa1290110:intron | 40.0% | |
| CATTTCTCAACTTGAACGCA+AGG | - | chr8_3:44770847-44770866 | Msa1290110:intron | 40.0% | |
| TTCTTTAGCAGACAGAAGTG+TGG | + | chr8_3:44770926-44770945 | None:intergenic | 40.0% | |
| ! | TTCTTCAGTAGGTTTGGGAT+CGG | + | chr8_3:44771049-44771068 | None:intergenic | 40.0% |
| CTGAAGAATTCTCAGTGATG+TGG | - | chr8_3:44771061-44771080 | Msa1290110:intron | 40.0% | |
| GAGATTAACTGCTTGTGTCA+AGG | + | chr8_3:44771097-44771116 | None:intergenic | 40.0% | |
| GCAGTGTTCCTATTAAAAGG+AGG | + | chr8_3:44771119-44771138 | None:intergenic | 40.0% | |
| ACTGTCAAATGTGACCTATG+TGG | + | chr8_3:44771166-44771185 | None:intergenic | 40.0% | |
| CTTCAAATTATGGGCGTGTA+TGG | - | chr8_3:44771385-44771404 | Msa1290110:intron | 40.0% | |
| ! | AAGGGCAAGCAAAAGTACAT+AGG | - | chr8_3:44771627-44771646 | Msa1290110:intron | 40.0% |
| TTTGTAGTTGGAGGGATTGT+TGG | + | chr8_3:44771689-44771708 | None:intergenic | 40.0% | |
| CTCTCATCATTTGTAGTTGG+AGG | + | chr8_3:44771698-44771717 | None:intergenic | 40.0% | |
| GATGAGAGAATACACCAACT+TGG | - | chr8_3:44771710-44771729 | Msa1290110:intron | 40.0% | |
| TTGATGCTTGTCTTCCAAGT+TGG | + | chr8_3:44771727-44771746 | None:intergenic | 40.0% | |
| AAAATCTTCACTCGCTGTGT+AGG | + | chr8_3:44771789-44771808 | None:intergenic | 40.0% | |
| ACCTAAGAGGAAAAATGAGC+CGG | + | chr8_3:44771834-44771853 | None:intergenic | 40.0% | |
| GGTATTCACAATGAGAAGGT+TGG | - | chr8_3:44771851-44771870 | Msa1290110:intron | 40.0% | |
| GATGAAGATGTTCTTCCCAT+TGG | - | chr8_3:44771911-44771930 | Msa1290110:intron | 40.0% | |
| ACAACCCGAACACAGTGAAA+TGG | - | chr8_3:44767842-44767861 | Msa1290110:three_prime_UTR | 45.0% | |
| !! | CAGTTTTAGCAACATGCCAC+TGG | + | chr8_3:44767975-44767994 | None:intergenic | 45.0% |
| CAGTGGCATGTTGCTAAAAC+TGG | - | chr8_3:44767973-44767992 | Msa1290110:exon | 45.0% | |
| ! | TTGTCGAAATCAAGGCACCA+TGG | - | chr8_3:44768214-44768233 | Msa1290110:CDS | 45.0% |
| ACAATTACGCTGAAACCGTG+CGG | + | chr8_3:44768911-44768930 | None:intergenic | 45.0% | |
| GGTTTCAGCGTAATTGTGAC+TGG | - | chr8_3:44768914-44768933 | Msa1290110:intron | 45.0% | |
| AGCTCATTGATGAGTGAAGG+GGG | - | chr8_3:44769036-44769055 | Msa1290110:intron | 45.0% | |
| ATCAACAAGTTCCTGTTGGC+AGG | + | chr8_3:44769222-44769241 | None:intergenic | 45.0% | |
| !! | GCCAACAGGAACTTGTTGAT+TGG | - | chr8_3:44769222-44769241 | Msa1290110:intron | 45.0% |
| CCCAATCAACAAGTTCCTGT+TGG | + | chr8_3:44769226-44769245 | None:intergenic | 45.0% | |
| !! | ACCAAGAAGCATCGCAACAT+GGG | + | chr8_3:44769297-44769316 | None:intergenic | 45.0% |
| CAATAGTAGCCTGCATGTGA+AGG | + | chr8_3:44769422-44769441 | None:intergenic | 45.0% | |
| TTCCAACCAGCTGAGGAAAA+AGG | - | chr8_3:44769450-44769469 | Msa1290110:intron | 45.0% | |
| TTAGCGACACAGTATCCCTT+AGG | - | chr8_3:44769540-44769559 | Msa1290110:intron | 45.0% | |
| CATCCTGCTAAAAAATCCCC+CGG | + | chr8_3:44769582-44769601 | None:intergenic | 45.0% | |
| !!! | GGGGATTTTTTAGCAGGATG+TGG | - | chr8_3:44769582-44769601 | Msa1290110:intron | 45.0% |
| !!! | TGTTTTGGCCGCTTCAATGT+CGG | - | chr8_3:44769665-44769684 | Msa1290110:intron | 45.0% |
| GCTAATCACCGACATTGAAG+CGG | + | chr8_3:44769676-44769695 | None:intergenic | 45.0% | |
| GACTCAACCTGGGAATCTAA+AGG | + | chr8_3:44769729-44769748 | None:intergenic | 45.0% | |
| AATTCTGCAGGTCCTTTCTG+TGG | - | chr8_3:44769848-44769867 | Msa1290110:intron | 45.0% | |
| GTTCATGAGAAGACTCTGAG+TGG | + | chr8_3:44769881-44769900 | None:intergenic | 45.0% | |
| GCTTCAATGCACTAAGGCAA+AGG | - | chr8_3:44769955-44769974 | Msa1290110:intron | 45.0% | |
| !!! | GTTTTGGAGACCTCTACCAA+TGG | - | chr8_3:44770185-44770204 | Msa1290110:intron | 45.0% |
| CATTGAGACACCATTGGTAG+AGG | + | chr8_3:44770198-44770217 | None:intergenic | 45.0% | |
| CGTCGTCATTGTTCAGATCA+TGG | + | chr8_3:44770466-44770485 | None:intergenic | 45.0% | |
| TGATCTGAACAATGACGACG+CGG | - | chr8_3:44770466-44770485 | Msa1290110:CDS | 45.0% | |
| TCCTTTCAATCCTTGCTGCA+AGG | + | chr8_3:44770515-44770534 | None:intergenic | 45.0% | |
| ! | TTTCTAGTGCTCTGTCTCCT+CGG | - | chr8_3:44770625-44770644 | Msa1290110:intron | 45.0% |
| ATGTCTAGCATCTGCTACTC+AGG | + | chr8_3:44770719-44770738 | None:intergenic | 45.0% | |
| TGGAACCTTGGGTCTATTGA+AGG | - | chr8_3:44770813-44770832 | Msa1290110:intron | 45.0% | |
| AACCTTGGGTCTATTGAAGG+TGG | - | chr8_3:44770816-44770835 | Msa1290110:intron | 45.0% | |
| TTCCACCTTCAATAGACCCA+AGG | + | chr8_3:44770821-44770840 | None:intergenic | 45.0% | |
| ! | GGTTTGGGATCGGATAAACT+GGG | + | chr8_3:44771039-44771058 | None:intergenic | 45.0% |
| ! | AGGTTTGGGATCGGATAAAC+TGG | + | chr8_3:44771040-44771059 | None:intergenic | 45.0% |
| TGTGTCTGCAATTGCAGTTG+TGG | + | chr8_3:44771266-44771285 | None:intergenic | 45.0% | |
| ! | TGTAACACATGTACCGGTGT+TGG | + | chr8_3:44771414-44771433 | None:intergenic | 45.0% |
| ACTGCAGAGGTTGAGTTCTT+TGG | - | chr8_3:44771653-44771672 | Msa1290110:intron | 45.0% | |
| CCTAAGAGGAAAAATGAGCC+GGG | + | chr8_3:44771833-44771852 | None:intergenic | 45.0% | |
| !!! | ATTATTTAAATAAGTTTTAT+AGG | - | chr8_3:44769373-44769392 | Msa1290110:intron | 5.0% |
| AGGCGTGAGCTTGACAAGTT+AGG | - | chr8_3:44767940-44767959 | Msa1290110:three_prime_UTR | 50.0% | |
| CATGGATGCTTTGCCAATCC+AGG | - | chr8_3:44768050-44768069 | Msa1290110:CDS | 50.0% | |
| TGAGGATGCAAATGCGGTTG+CGG | + | chr8_3:44768837-44768856 | None:intergenic | 50.0% | |
| CAATTACGCTGAAACCGTGC+GGG | + | chr8_3:44768910-44768929 | None:intergenic | 50.0% | |
| CTGGTATACTTCCTGCCAAC+AGG | - | chr8_3:44769208-44769227 | Msa1290110:intron | 50.0% | |
| !! | CACCAAGAAGCATCGCAACA+TGG | + | chr8_3:44769298-44769317 | None:intergenic | 50.0% |
| ! | TGCCTTTTTCCTCAGCTGGT+TGG | + | chr8_3:44769455-44769474 | None:intergenic | 50.0% |
| ! | CCTATGCCTTTTTCCTCAGC+TGG | + | chr8_3:44769459-44769478 | None:intergenic | 50.0% |
| ! | CCAGCTGAGGAAAAAGGCAT+AGG | - | chr8_3:44769456-44769475 | Msa1290110:intron | 50.0% |
| CGTGATGCAACAACGCCTAA+GGG | + | chr8_3:44769558-44769577 | None:intergenic | 50.0% | |
| ! | CCTTAGGCGTTGTTGCATCA+CGG | - | chr8_3:44769556-44769575 | Msa1290110:intron | 50.0% |
| GACATTGAAGCGGCCAAAAC+AGG | + | chr8_3:44769666-44769685 | None:intergenic | 50.0% | |
| GGTGGATCCTTTAGATTCCC+AGG | - | chr8_3:44769719-44769738 | Msa1290110:intron | 50.0% | |
| AGTGGACCATTGCCACAGAA+AGG | + | chr8_3:44769863-44769882 | None:intergenic | 50.0% | |
| GCCTTGCAGCAAGGATTGAA+AGG | - | chr8_3:44770511-44770530 | Msa1290110:CDS | 50.0% | |
| CAATTGTGCTGTGGCCACAT+AGG | - | chr8_3:44771149-44771168 | Msa1290110:intron | 50.0% | |
| GTCTGCAATTGCAGTTGTGG+AGG | + | chr8_3:44771263-44771282 | None:intergenic | 50.0% | |
| AGTACATAGGTGCACTGCAG+AGG | - | chr8_3:44771640-44771659 | Msa1290110:intron | 50.0% | |
| TCTTCACTCGCTGTGTAGGT+TGG | + | chr8_3:44771785-44771804 | None:intergenic | 50.0% | |
| !! | CCCGGCTCATTTTTCCTCTT+AGG | - | chr8_3:44771830-44771849 | Msa1290110:intron | 50.0% |
| GCATGTATCGCAGCACCAAT+GGG | + | chr8_3:44771929-44771948 | None:intergenic | 50.0% | |
| TGCATGTATCGCAGCACCAA+TGG | + | chr8_3:44771930-44771949 | None:intergenic | 50.0% | |
| ! | AACTGCGCATTTTGCCCGCA+CGG | - | chr8_3:44768893-44768912 | Msa1290110:intron | 55.0% |
| GCCCATGTTGCGATGCTTCT+TGG | - | chr8_3:44769293-44769312 | Msa1290110:intron | 55.0% | |
| CCGTGATGCAACAACGCCTA+AGG | + | chr8_3:44769559-44769578 | None:intergenic | 55.0% | |
| GCAGGTCCTTTCTGTGGCAA+TGG | - | chr8_3:44769854-44769873 | Msa1290110:intron | 55.0% | |
| TGCTGCAAGGCTCGTACAAG+AGG | + | chr8_3:44770502-44770521 | None:intergenic | 55.0% | |
| CTTGTACGAGCCTTGCAGCA+AGG | - | chr8_3:44770502-44770521 | Msa1290110:CDS | 55.0% | |
| TCGCGACTGCAATTGTGCTG+TGG | - | chr8_3:44771140-44771159 | Msa1290110:intron | 55.0% | |
| ! | AGGCGTTGTTGCATCACGGC+CGG | - | chr8_3:44769560-44769579 | Msa1290110:intron | 60.0% |
| !!! | CGGCCGGGGGATTTTTTAGC+AGG | - | chr8_3:44769576-44769595 | Msa1290110:intron | 60.0% |
| GGAAGGTGAGCATGGCCTAG+AGG | + | chr8_3:44770752-44770771 | None:intergenic | 60.0% | |
| AGGCCATGCTCACCTTCCTC+TGG | - | chr8_3:44770754-44770773 | Msa1290110:intron | 60.0% | |
| GTGCCAGAGGAAGGTGAGCA+TGG | + | chr8_3:44770760-44770779 | None:intergenic | 60.0% | |
| ! | AACAATGGCGACGGTGCCAG+AGG | + | chr8_3:44770773-44770792 | None:intergenic | 60.0% |
| GCGTGTATGGCGTCCAACAC+CGG | - | chr8_3:44771398-44771417 | Msa1290110:intron | 60.0% | |
| GGCGTTGTTGCATCACGGCC+GGG | - | chr8_3:44769561-44769580 | Msa1290110:intron | 65.0% | |
| GCGTTGTTGCATCACGGCCG+GGG | - | chr8_3:44769562-44769581 | Msa1290110:intron | 65.0% | |
| CGTTGTTGCATCACGGCCGG+GGG | - | chr8_3:44769563-44769582 | Msa1290110:intron | 65.0% | |
| ! | ATGGCGACGGTGCCAGAGGA+AGG | + | chr8_3:44770769-44770788 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 44767788 | 44772201 | 44767788 | ID=Msa1290110;Name=Msa1290110 |
| chr8_3 | mRNA | 44767788 | 44772201 | 44767788 | ID=Msa1290110-mRNA-1;Parent=Msa1290110;Name=Msa1290110-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.66|0.42|1|0.5|0.42|7|204|391 |
| chr8_3 | exon | 44767788 | 44768369 | 44767788 | ID=Msa1290110-mRNA-1:exon:12294;Parent=Msa1290110-mRNA-1 |
| chr8_3 | exon | 44770003 | 44770131 | 44770003 | ID=Msa1290110-mRNA-1:exon:12293;Parent=Msa1290110-mRNA-1 |
| chr8_3 | exon | 44770249 | 44770349 | 44770249 | ID=Msa1290110-mRNA-1:exon:12292;Parent=Msa1290110-mRNA-1 |
| chr8_3 | exon | 44770359 | 44770557 | 44770359 | ID=Msa1290110-mRNA-1:exon:12291;Parent=Msa1290110-mRNA-1 |
| chr8_3 | exon | 44770634 | 44770759 | 44770634 | ID=Msa1290110-mRNA-1:exon:12290;Parent=Msa1290110-mRNA-1 |
| chr8_3 | exon | 44771918 | 44772154 | 44771918 | ID=Msa1290110-mRNA-1:exon:12289;Parent=Msa1290110-mRNA-1 |
| chr8_3 | exon | 44772196 | 44772201 | 44772196 | ID=Msa1290110-mRNA-1:exon:12288;Parent=Msa1290110-mRNA-1 |
| chr8_3 | CDS | 44772196 | 44772201 | 44772196 | ID=Msa1290110-mRNA-1:cds;Parent=Msa1290110-mRNA-1 |
| chr8_3 | CDS | 44771918 | 44772154 | 44771918 | ID=Msa1290110-mRNA-1:cds;Parent=Msa1290110-mRNA-1 |
| chr8_3 | CDS | 44770634 | 44770759 | 44770634 | ID=Msa1290110-mRNA-1:cds;Parent=Msa1290110-mRNA-1 |
| chr8_3 | CDS | 44770359 | 44770557 | 44770359 | ID=Msa1290110-mRNA-1:cds;Parent=Msa1290110-mRNA-1 |
| chr8_3 | CDS | 44770249 | 44770349 | 44770249 | ID=Msa1290110-mRNA-1:cds;Parent=Msa1290110-mRNA-1 |
| chr8_3 | CDS | 44770003 | 44770131 | 44770003 | ID=Msa1290110-mRNA-1:cds;Parent=Msa1290110-mRNA-1 |
| chr8_3 | CDS | 44767992 | 44768369 | 44767992 | ID=Msa1290110-mRNA-1:cds;Parent=Msa1290110-mRNA-1 |
| chr8_3 | three_prime_UTR | 44767788 | 44767991 | 44767788 | ID=Msa1290110-mRNA-1:three_prime_utr;Parent=Msa1290110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
