Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387130 | XP_003628629.1 | 89.862 | 434 | 15 | 3 | 1 | 407 | 2 | 433 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387130 | sp|Q84XG9|ILL1_ORYSI | 50.130 | 385 | 164 | 3 | 42 | 398 | 40 | 424 | 3.68e-131 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387130 | G7LER0 | 89.862 | 434 | 15 | 3 | 1 | 407 | 2 | 433 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1387130 | Msa1397890 | 0.998693 | 3.278308e-273 | -8.615850e-47 |
| Msa0797350 | Msa1387130 | 0.813541 | 2.429339e-51 | -8.615850e-47 |
| Msa1227600 | Msa1387130 | 0.900353 | 7.974194e-78 | -8.615850e-47 |
| Msa1290110 | Msa1387130 | 0.872531 | 2.961238e-67 | -8.615850e-47 |
| Msa1194460 | Msa1387130 | 0.804864 | 1.760603e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387130 | MtrunA17_Chr8g0364301 | 89.862 | 434 | 15 | 3 | 1 | 407 | 2 | 433 | 0.0 | 795 |
| Msa1387130 | MtrunA17_Chr8g0371561 | 76.869 | 428 | 67 | 4 | 1 | 396 | 2 | 429 | 0.0 | 665 |
| Msa1387130 | MtrunA17_Chr3g0124881 | 49.246 | 398 | 175 | 2 | 28 | 398 | 74 | 471 | 3.03e-137 | 401 |
| Msa1387130 | MtrunA17_Chr2g0330661 | 51.000 | 400 | 168 | 3 | 27 | 398 | 29 | 428 | 3.26e-135 | 394 |
| Msa1387130 | MtrunA17_Chr2g0330721 | 50.649 | 385 | 163 | 2 | 41 | 398 | 49 | 433 | 1.02e-132 | 388 |
| Msa1387130 | MtrunA17_Chr2g0330671 | 46.919 | 422 | 194 | 3 | 7 | 398 | 11 | 432 | 3.44e-132 | 387 |
| Msa1387130 | MtrunA17_Chr2g0328461 | 49.870 | 385 | 166 | 2 | 41 | 398 | 48 | 432 | 5.54e-128 | 376 |
| Msa1387130 | MtrunA17_Chr8g0341471 | 50.129 | 389 | 164 | 5 | 29 | 387 | 28 | 416 | 7.62e-126 | 370 |
| Msa1387130 | MtrunA17_Chr3g0128101 | 43.262 | 423 | 204 | 3 | 9 | 404 | 7 | 420 | 4.50e-119 | 352 |
| Msa1387130 | MtrunA17_Chr8g0364461 | 52.288 | 306 | 91 | 8 | 119 | 396 | 96 | 374 | 1.35e-93 | 287 |
| Msa1387130 | MtrunA17_Chr2g0328471 | 55.556 | 162 | 69 | 2 | 1 | 161 | 1 | 160 | 4.01e-56 | 182 |
| Msa1387130 | MtrunA17_Chr2g0330711 | 57.143 | 161 | 66 | 2 | 1 | 160 | 1 | 159 | 9.05e-56 | 181 |
| Msa1387130 | MtrunA17_Chr2g0328481 | 35.922 | 309 | 126 | 3 | 162 | 398 | 4 | 312 | 1.86e-55 | 186 |
| Msa1387130 | MtrunA17_Chr3g0128121 | 63.415 | 41 | 15 | 0 | 134 | 174 | 1 | 41 | 6.62e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1387130 | AT1G51760.1 | 48.120 | 399 | 178 | 3 | 29 | 398 | 24 | 422 | 3.39e-129 | 379 |
| Msa1387130 | AT5G54140.1 | 45.238 | 420 | 191 | 4 | 9 | 398 | 6 | 416 | 6.15e-125 | 368 |
| Msa1387130 | AT5G56660.1 | 47.739 | 398 | 176 | 5 | 30 | 398 | 28 | 422 | 1.43e-123 | 365 |
| Msa1387130 | AT1G51780.1 | 44.235 | 425 | 207 | 4 | 1 | 398 | 1 | 422 | 7.41e-122 | 360 |
| Msa1387130 | AT1G44350.1 | 46.354 | 384 | 182 | 3 | 26 | 385 | 62 | 445 | 9.31e-122 | 361 |
| Msa1387130 | AT5G56650.1 | 48.831 | 385 | 167 | 4 | 41 | 398 | 40 | 421 | 3.42e-121 | 359 |
| Msa1387130 | AT3G02875.1 | 44.246 | 391 | 188 | 3 | 42 | 402 | 43 | 433 | 1.38e-116 | 347 |
| Msa1387130 | AT5G56650.2 | 52.399 | 271 | 100 | 3 | 41 | 284 | 40 | 308 | 3.20e-89 | 273 |
| Msa1387130 | AT3G02875.2 | 46.468 | 269 | 117 | 2 | 42 | 283 | 43 | 311 | 4.36e-79 | 247 |
| Msa1387130 | AT3G02875.3 | 50.213 | 235 | 109 | 3 | 42 | 268 | 43 | 277 | 7.24e-72 | 228 |
Find 83 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGATGCTTTGCCAATTC+AGG | 0.247866 | tig0020882:-53515 | Msa1387130:intron |
| TTCATCCATTTCACTGTGTT+GGG | 0.250801 | tig0020882:+53718 | None:intergenic |
| GCCCATGTTGCGATGCTTCT+TGG | 0.288317 | tig0020882:-52272 | Msa1387130:CDS |
| CAATGGCCTGTTGCTAAAAC+TGG | 0.311143 | tig0020882:-53592 | Msa1387130:CDS |
| CCTCCAAATGTTACTGAATC+AGG | 0.311713 | tig0020882:+51659 | None:intergenic |
| CTTCATCCATTTCACTGTGT+TGG | 0.318859 | tig0020882:+53717 | None:intergenic |
| TTCCAACCAGCTGAGGAAAA+AGG | 0.321874 | tig0020882:-52115 | Msa1387130:CDS |
| AGAAATGAAAGATAAATTAA+AGG | 0.322052 | tig0020882:-52231 | Msa1387130:intron |
| GTTGTTGCTAAGATTGGTTC+TGG | 0.322981 | tig0020882:-53568 | Msa1387130:CDS |
| CTAATTATGCTTCAGGAGTT+CGG | 0.339989 | tig0020882:-49387 | Msa1387130:three_prime_UTR |
| ATGGAAGCTAATTATGCTTC+AGG | 0.340847 | tig0020882:-49394 | Msa1387130:three_prime_UTR |
| ACTGCAGAGGTTGAGTTCTT+TGG | 0.343440 | tig0020882:-49913 | Msa1387130:CDS |
| ATTCCTGATTCAGTAACATT+TGG | 0.347097 | tig0020882:-51662 | Msa1387130:CDS |
| AATTCCTCATATCCAAGTTC+TGG | 0.350678 | tig0020882:+53667 | None:intergenic |
| ACTGGAGTTGTTGCTAAGAT+TGG | 0.366699 | tig0020882:-53574 | Msa1387130:CDS |
| AGGACTATGAGCTGAATATA+TGG | 0.368562 | tig0020882:+49690 | None:intergenic |
| TAATTATGCTTCAGGAGTTC+GGG | 0.378638 | tig0020882:-49386 | None:intergenic |
| CAAGTCTTAGATGATTGTTT+AGG | 0.382508 | tig0020882:+53851 | None:intergenic |
| TCAGCTCTAAGAGCAATAAA+AGG | 0.385249 | tig0020882:+53538 | None:intergenic |
| AATTAGCCCAACATATTAGA+TGG | 0.387344 | tig0020882:-49413 | Msa1387130:three_prime_UTR |
| ATCCAAGTTCTGGATATTCA+TGG | 0.393550 | tig0020882:+53677 | None:intergenic |
| GCCAACAGGAACTTGTTGAT+TGG | 0.403152 | tig0020882:-52343 | Msa1387130:intron |
| CTCTCATCATTTGTAGTTGG+AGG | 0.409256 | tig0020882:+49871 | None:intergenic |
| GATCATAAGAGCAAAGTAGA+TGG | 0.419049 | tig0020882:-52320 | Msa1387130:CDS |
| ATTCTCTCATCATTTGTAGT+TGG | 0.422375 | tig0020882:+49868 | None:intergenic |
| CCAACAGGAACTTGTTGATT+GGG | 0.431956 | tig0020882:-52342 | Msa1387130:intron |
| GGCGTTGTTGCATCACGGCC+GGG | 0.434174 | tig0020882:-52004 | Msa1387130:CDS |
| GCAGGTCCTTTCTGTGGCAA+TGG | 0.442153 | tig0020882:-51711 | Msa1387130:intron |
| TTTGTAGTTGGAGGGATTGT+TGG | 0.442878 | tig0020882:+49880 | None:intergenic |
| CCTGATTCAGTAACATTTGG+AGG | 0.445538 | tig0020882:-51659 | Msa1387130:CDS |
| AGGCGTGAGCTTGACAAGTT+AGG | 0.445889 | tig0020882:-53625 | Msa1387130:CDS |
| AGGCGTTGTTGCATCACGGC+CGG | 0.446779 | tig0020882:-52005 | Msa1387130:CDS |
| TAGCTTCCATCTAATATGTT+GGG | 0.447610 | tig0020882:+49407 | None:intergenic |
| CAAGCATCAAGTATGATTGT+TGG | 0.450241 | tig0020882:-49829 | Msa1387130:CDS |
| CCGTGATGCAACAACGCCTA+AGG | 0.452190 | tig0020882:+52009 | None:intergenic |
| AGAACCCCAACACAGTGAAA+TGG | 0.460531 | tig0020882:-53723 | Msa1387130:CDS |
| ATCCATGAATATCCAGAACT+TGG | 0.462489 | tig0020882:-53679 | Msa1387130:CDS |
| TTAGCTTCCATCTAATATGT+TGG | 0.474036 | tig0020882:+49406 | None:intergenic |
| CAGAAGAGAAATTATAATAG+AGG | 0.475175 | tig0020882:-49534 | Msa1387130:three_prime_UTR |
| GCGTTGTTGCATCACGGCCG+GGG | 0.478016 | tig0020882:-52003 | Msa1387130:CDS |
| GGTATTCACAATGAGAAGGT+TGG | 0.489119 | tig0020882:-49715 | Msa1387130:CDS |
| GCTTCAAAGCAAAGATCAAA+GGG | 0.489839 | tig0020882:-51958 | Msa1387130:CDS |
| ATATCCAGAACTTGGATATG+AGG | 0.491903 | tig0020882:-53671 | Msa1387130:CDS |
| TCATGACAAGTTCTGTGATA+AGG | 0.498650 | tig0020882:-53645 | Msa1387130:CDS |
| CACCAAGAAGCATCGCAACA+TGG | 0.504864 | tig0020882:+52270 | None:intergenic |
| TCTCATTGTGAATACCTAAG+AGG | 0.507391 | tig0020882:+49722 | None:intergenic |
| ACCTAAGAGGAAAAGTGAGC+CGG | 0.511002 | tig0020882:+49735 | None:intergenic |
| TTGATGCTTGTCTTCCAAGT+TGG | 0.517245 | tig0020882:+49842 | None:intergenic |
| GCATGTATCGCAGCACCAAT+GGG | 0.522841 | tig0020882:+49640 | None:intergenic |
| TCTCATCATTTGTAGTTGGA+GGG | 0.526258 | tig0020882:+49872 | None:intergenic |
| TCATCCATTTCACTGTGTTG+GGG | 0.526334 | tig0020882:+53719 | None:intergenic |
| AATAGTAGTTTGTAATAGCA+AGG | 0.528710 | tig0020882:+49493 | None:intergenic |
| AGTTAGGTGTATCTTATCAA+TGG | 0.532989 | tig0020882:-53609 | Msa1387130:CDS |
| AGCTTCAAAGCAAAGATCAA+AGG | 0.536414 | tig0020882:-51959 | Msa1387130:CDS |
| GATGAAGATGTTCTTCCCAT+TGG | 0.537284 | tig0020882:-49655 | Msa1387130:CDS |
| TATTGCTCTTAGAGCTGACA+TGG | 0.551848 | tig0020882:-53533 | Msa1387130:CDS |
| AAAATCTTCACTCGCTGTGT+AGG | 0.554083 | tig0020882:+49780 | None:intergenic |
| TGCATGTATCGCAGCACCAA+TGG | 0.554871 | tig0020882:+49639 | None:intergenic |
| ATCATAAGAGCAAAGTAGAT+GGG | 0.556957 | tig0020882:-52319 | Msa1387130:CDS |
| CCTAAGAGGAAAAGTGAGCC+GGG | 0.557980 | tig0020882:+49736 | None:intergenic |
| TCTTCACTCGCTGTGTAGGT+TGG | 0.559495 | tig0020882:+49784 | None:intergenic |
| CCTTAGGCGTTGTTGCATCA+CGG | 0.566026 | tig0020882:-52009 | Msa1387130:CDS |
| GATGAGAGAATACACCAACT+TGG | 0.573593 | tig0020882:-49856 | Msa1387130:CDS |
| CTTAGGTATTCACAATGAGA+AGG | 0.574770 | tig0020882:-49719 | Msa1387130:CDS |
| GCTTCAATGCACTAAGGCAA+AGG | 0.584166 | tig0020882:-51610 | Msa1387130:CDS |
| AATTCTGCAGGTCCTTTCTG+TGG | 0.585555 | tig0020882:-51717 | Msa1387130:intron |
| AGTGGACCATTGCCACAGAA+AGG | 0.591959 | tig0020882:+51705 | None:intergenic |
| TCTTATATTCCAACCAGCTG+AGG | 0.592807 | tig0020882:-52122 | Msa1387130:CDS |
| GTACTATTAAATATCTCAGA+AGG | 0.601606 | tig0020882:-49453 | Msa1387130:three_prime_UTR |
| CGTGATGCAACAACGCCTAA+GGG | 0.604454 | tig0020882:+52010 | None:intergenic |
| TTAGCGACACAGTATCCCTT+AGG | 0.606827 | tig0020882:-52025 | Msa1387130:CDS |
| CGTTGTTGCATCACGGCCGG+GGG | 0.609021 | tig0020882:-52002 | Msa1387130:CDS |
| AAGGGCAAGCAAAAGTACAT+AGG | 0.610471 | tig0020882:-49939 | Msa1387130:CDS |
| ACCAAGAAGCATCGCAACAT+GGG | 0.617744 | tig0020882:+52271 | None:intergenic |
| GCTCTAAGAGCAATAAAAGG+AGG | 0.618553 | tig0020882:+53541 | None:intergenic |
| TGAGATATTTAATAGTACAA+TGG | 0.618607 | tig0020882:+49458 | None:intergenic |
| AGTACATAGGTGCACTGCAG+AGG | 0.622649 | tig0020882:-49926 | Msa1387130:CDS |
| AAATGTGCTTGAAGATGTAG+TGG | 0.633529 | tig0020882:-52065 | Msa1387130:CDS |
| TTCAAAGCAAAGATCAAAGG+GGG | 0.633646 | tig0020882:-51956 | Msa1387130:CDS |
| ACTAAGGCAAAGGATAGAAG+AGG | 0.641015 | tig0020882:-51600 | Msa1387130:intron |
| TCTTCATCAATAAAATAGTG+AGG | 0.665866 | tig0020882:+49670 | None:intergenic |
| GTTCATGAGAAGACTCTGAG+TGG | 0.725565 | tig0020882:+51687 | None:intergenic |
| CTTCAAAGCAAAGATCAAAG+GGG | 0.730699 | tig0020882:-51957 | Msa1387130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACAGTAAAATTA+AGG | - | tig0020882:50277-50296 | Msa1387130:intron | 10.0% |
| !!! | ATGTCAATTATTTTTTATTA+AGG | - | tig0020882:50372-50391 | Msa1387130:intron | 10.0% |
| !! | TTACTATTTATTACTCATAT+AGG | - | tig0020882:50117-50136 | Msa1387130:intron | 15.0% |
| !!! | TTATTTTTTATTAAGGAAAG+TGG | - | tig0020882:50379-50398 | Msa1387130:intron | 15.0% |
| !! | TAGTTTAATATTACCATTTA+CGG | - | tig0020882:50742-50761 | Msa1387130:intron | 15.0% |
| !! | AGAAATGAAAGATAAATTAA+AGG | - | tig0020882:51012-51031 | Msa1387130:intron | 15.0% |
| !!! | ACAATTTTTCAAATTGTTAT+TGG | - | tig0020882:53112-53131 | Msa1387130:intron | 15.0% |
| !!! | TTTATTTTTGTTACCTGAAT+TGG | + | tig0020882:49744-49763 | None:intergenic | 20.0% |
| !!! | TATAATTTTTGCAAAAATCG+CGG | - | tig0020882:49937-49956 | Msa1387130:CDS | 20.0% |
| !! | TGATCTTTGTAAAAAATTTG+AGG | - | tig0020882:50064-50083 | Msa1387130:intron | 20.0% |
| !! | AGGTACAATATTAATAGAAA+AGG | + | tig0020882:50433-50452 | None:intergenic | 20.0% |
| !! | AAAAACAAATCAGATGTTAT+AGG | + | tig0020882:50651-50670 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTATATTGCAAGT+TGG | - | tig0020882:50662-50681 | Msa1387130:intron | 20.0% |
| !! | AAGATAAATTAAAGGTAAAG+TGG | - | tig0020882:51020-51039 | Msa1387130:intron | 20.0% |
| !! | TTGATATTGTTGAAAATTAC+AGG | + | tig0020882:51787-51806 | None:intergenic | 20.0% |
| !!! | TGTAATTTTCAACAATATCA+AGG | - | tig0020882:51786-51805 | Msa1387130:intron | 20.0% |
| !! | ATCTGTAAATATCAAAACAA+TGG | + | tig0020882:52465-52484 | None:intergenic | 20.0% |
| !!! | AGTCTATAATTTATAGGTTT+TGG | - | tig0020882:52911-52930 | Msa1387130:intron | 20.0% |
| !! | TGAGATATTTAATAGTACAA+TGG | + | tig0020882:53788-53807 | None:intergenic | 20.0% |
| ! | ATTTGAGGAAAAAAATGAGA+AGG | - | tig0020882:50079-50098 | Msa1387130:intron | 25.0% |
| ! | GTATGAGAAAAAATGAAAAG+TGG | - | tig0020882:50152-50171 | Msa1387130:intron | 25.0% |
| ! | TTCTATTAATATTGTACCTG+AGG | - | tig0020882:50434-50453 | Msa1387130:intron | 25.0% |
| !! | TCTTTTGTAATACCAATTCA+TGG | - | tig0020882:50475-50494 | Msa1387130:intron | 25.0% |
| !!! | TTAATCTTCTAGGACTAATT+TGG | - | tig0020882:50806-50825 | Msa1387130:intron | 25.0% |
| ! | ATATTTCTTGGAAGCAATTA+CGG | + | tig0020882:50832-50851 | None:intergenic | 25.0% |
| ! | ACTTATTGTGCTATATTTCT+TGG | + | tig0020882:50844-50863 | None:intergenic | 25.0% |
| ! | AATTAAAGGTAAAGTGGAAT+TGG | - | tig0020882:51026-51045 | Msa1387130:intron | 25.0% |
| ! | AGAAATAATGTGTGAAAACT+TGG | + | tig0020882:51451-51470 | None:intergenic | 25.0% |
| ! | TGAAAATTACAGGAAAAACA+CGG | + | tig0020882:51777-51796 | None:intergenic | 25.0% |
| ! | TTGATATTTACAGATTTCGA+TGG | - | tig0020882:52470-52489 | Msa1387130:intron | 25.0% |
| !! | TAACTGAATCACAAACATTT+TGG | - | tig0020882:52657-52676 | Msa1387130:intron | 25.0% |
| ! | AAGTGCAGTCTATAATTTAT+AGG | - | tig0020882:52905-52924 | Msa1387130:intron | 25.0% |
| !!! | CTATAATTTATAGGTTTTGG+AGG | - | tig0020882:52914-52933 | Msa1387130:intron | 25.0% |
| ! | ATGTTGTGATTCTTGATATT+GGG | + | tig0020882:52991-53010 | None:intergenic | 25.0% |
| ! | TATGTTGTGATTCTTGATAT+TGG | + | tig0020882:52992-53011 | None:intergenic | 25.0% |
| !!! | ATAATGAAGGCTCTAAATTA+CGG | + | tig0020882:53020-53039 | None:intergenic | 25.0% |
| !!! | TTTGTTTGACTTTTTTGTAC+AGG | - | tig0020882:53275-53294 | Msa1387130:intron | 25.0% |
| !!! | TTTTTTGTACAGGTTATCAA+AGG | - | tig0020882:53285-53304 | Msa1387130:intron | 25.0% |
| !! | TTTTTGTACAGGTTATCAAA+GGG | - | tig0020882:53286-53305 | Msa1387130:intron | 25.0% |
| !! | TGAAGATTTTGCATTTTACT+TGG | - | tig0020882:53476-53495 | Msa1387130:intron | 25.0% |
| ! | TCTTCATCAATAAAATAGTG+AGG | + | tig0020882:53576-53595 | None:intergenic | 25.0% |
| ! | CAGAAGAGAAATTATAATAG+AGG | - | tig0020882:53709-53728 | Msa1387130:CDS | 25.0% |
| !! | AATAGTAGTTTGTAATAGCA+AGG | + | tig0020882:53753-53772 | None:intergenic | 25.0% |
| ! | GTACTATTAAATATCTCAGA+AGG | - | tig0020882:53790-53809 | Msa1387130:CDS | 25.0% |
| CAAGTCTTAGATGATTGTTT+AGG | + | tig0020882:49395-49414 | None:intergenic | 30.0% | |
| ACTGAAAAATCAGATTGTTG+AGG | - | tig0020882:49491-49510 | Msa1387130:three_prime_UTR | 30.0% | |
| AGTTAGGTGTATCTTATCAA+TGG | - | tig0020882:49634-49653 | Msa1387130:CDS | 30.0% | |
| ! | AACACAAGAAAGTGAAGTTT+TGG | + | tig0020882:49778-49797 | None:intergenic | 30.0% |
| AAACTTCAACAAAATCACCA+TGG | + | tig0020882:49912-49931 | None:intergenic | 30.0% | |
| CAAAACATGCAGAAACATTA+TGG | - | tig0020882:49995-50014 | Msa1387130:intron | 30.0% | |
| GCATGTTTGATATAATGCTA+TGG | - | tig0020882:50024-50043 | Msa1387130:intron | 30.0% | |
| TGTCATCATTCTTCATAAGT+AGG | - | tig0020882:50191-50210 | Msa1387130:intron | 30.0% | |
| GTCATCATTCTTCATAAGTA+GGG | - | tig0020882:50192-50211 | Msa1387130:intron | 30.0% | |
| !! | AATTGAAGAGTTTCAAGTTG+TGG | - | tig0020882:50231-50250 | Msa1387130:intron | 30.0% |
| !! | ATTGAAGAGTTTCAAGTTGT+GGG | - | tig0020882:50232-50251 | Msa1387130:intron | 30.0% |
| ACAAACTTCAGAATTAATGC+AGG | + | tig0020882:50305-50324 | None:intergenic | 30.0% | |
| TCTTGTCATGTAATTGAGAA+TGG | - | tig0020882:50324-50343 | Msa1387130:intron | 30.0% | |
| ! | AATTAGCTGATTTAATCCTC+AGG | + | tig0020882:50453-50472 | None:intergenic | 30.0% |
| ! | CGAAATTTGAAACCATGAAT+TGG | + | tig0020882:50490-50509 | None:intergenic | 30.0% |
| TTATATTGAGGATGCAAATG+CGG | + | tig0020882:50521-50540 | None:intergenic | 30.0% | |
| CCTCAAAATCGTTTATATTG+AGG | + | tig0020882:50533-50552 | None:intergenic | 30.0% | |
| ! | CCTCAATATAAACGATTTTG+AGG | - | tig0020882:50530-50549 | Msa1387130:intron | 30.0% |
| ATGTTATAGGACATAGTAAG+AGG | + | tig0020882:50638-50657 | None:intergenic | 30.0% | |
| TTTGCTTAAGCTAAGTATAC+AGG | - | tig0020882:50779-50798 | Msa1387130:intron | 30.0% | |
| TACCAGATTAAGGATTTGAT+GGG | + | tig0020882:50872-50891 | None:intergenic | 30.0% | |
| ATACCAGATTAAGGATTTGA+TGG | + | tig0020882:50873-50892 | None:intergenic | 30.0% | |
| ATCATAAGAGCAAAGTAGAT+GGG | - | tig0020882:50924-50943 | Msa1387130:intron | 30.0% | |
| !!! | GTGAAGGATTTAGTTTTCAA+TGG | + | tig0020882:51084-51103 | None:intergenic | 30.0% |
| CTTGCAAAACATTGTTTCAA+GGG | - | tig0020882:51373-51392 | Msa1387130:intron | 30.0% | |
| ATTCCTGATTCAGTAACATT+TGG | - | tig0020882:51581-51600 | Msa1387130:intron | 30.0% | |
| AAAAAAGCTTCAATGCACTA+AGG | - | tig0020882:51627-51646 | Msa1387130:CDS | 30.0% | |
| TTATAGTCATGATGTAGTTG+TGG | + | tig0020882:51739-51758 | None:intergenic | 30.0% | |
| CTACATCATGACTATAATTG+AGG | - | tig0020882:51742-51761 | Msa1387130:intron | 30.0% | |
| GACTATAATTGAGGTTGTAT+CGG | - | tig0020882:51751-51770 | Msa1387130:intron | 30.0% | |
| ! | CAGTTTACAGTAAAAGGTTT+TGG | - | tig0020882:51847-51866 | Msa1387130:intron | 30.0% |
| !! | GAAAGGTATTTGATTGAAGA+TGG | + | tig0020882:52098-52117 | None:intergenic | 30.0% |
| !! | CAGTTTTAGTACAAGAAGAA+AGG | + | tig0020882:52115-52134 | None:intergenic | 30.0% |
| ! | AATTTTTGCATGTGCAAAGT+AGG | + | tig0020882:52241-52260 | None:intergenic | 30.0% |
| AAATATCAAAACAATGGCGA+CGG | + | tig0020882:52459-52478 | None:intergenic | 30.0% | |
| !! | TGAATCACAAACATTTTGGT+TGG | - | tig0020882:52661-52680 | Msa1387130:intron | 30.0% |
| ! | GTTAATCTCCTCCTTTTAAT+AGG | - | tig0020882:52785-52804 | Msa1387130:intron | 30.0% |
| CATTTGACAGTACTTTATCA+AGG | - | tig0020882:52852-52871 | Msa1387130:intron | 30.0% | |
| TAAAACCATGACAACAATTG+TGG | + | tig0020882:52885-52904 | None:intergenic | 30.0% | |
| CTTGATATTGGGATAAAGTT+CGG | + | tig0020882:52980-52999 | None:intergenic | 30.0% | |
| TACGTATGTGACAATAATGA+AGG | + | tig0020882:53033-53052 | None:intergenic | 30.0% | |
| ATTGTTTGTAACACATGTAC+CGG | + | tig0020882:53097-53116 | None:intergenic | 30.0% | |
| ATTCTCTCATCATTTGTAGT+TGG | + | tig0020882:53378-53397 | None:intergenic | 30.0% | |
| AATTAGCCCAACATATTAGA+TGG | - | tig0020882:53830-53849 | Msa1387130:CDS | 30.0% | |
| TAGCTTCCATCTAATATGTT+GGG | + | tig0020882:53839-53858 | None:intergenic | 30.0% | |
| TTAGCTTCCATCTAATATGT+TGG | + | tig0020882:53840-53859 | None:intergenic | 30.0% | |
| TTCATCCATTTCACTGTGTT+GGG | + | tig0020882:49528-49547 | None:intergenic | 35.0% | |
| ATCCATGAATATCCAGAACT+TGG | - | tig0020882:49564-49583 | Msa1387130:three_prime_UTR | 35.0% | |
| !! | ATCCAAGTTCTGGATATTCA+TGG | + | tig0020882:49569-49588 | None:intergenic | 35.0% |
| ATATCCAGAACTTGGATATG+AGG | - | tig0020882:49572-49591 | Msa1387130:exon | 35.0% | |
| AATTCCTCATATCCAAGTTC+TGG | + | tig0020882:49579-49598 | None:intergenic | 35.0% | |
| TCATGACAAGTTCTGTGATA+AGG | - | tig0020882:49598-49617 | Msa1387130:CDS | 35.0% | |
| !! | TCAGCTCTAAGAGCAATAAA+AGG | + | tig0020882:49708-49727 | None:intergenic | 35.0% |
| ! | CTTTGAGTTTGTCGAAATCA+AGG | - | tig0020882:49884-49903 | Msa1387130:CDS | 35.0% |
| !! | TTGAAGAGTTTCAAGTTGTG+GGG | - | tig0020882:50233-50252 | Msa1387130:intron | 35.0% |
| ATAAGCTCATTGATGAGTGA+AGG | - | tig0020882:50711-50730 | Msa1387130:intron | 35.0% | |
| TAAGCTCATTGATGAGTGAA+GGG | - | tig0020882:50712-50731 | Msa1387130:intron | 35.0% | |
| GTTGTACTTTCAACCGTAAA+TGG | + | tig0020882:50758-50777 | None:intergenic | 35.0% | |
| TACAGGTGGTTTAATCTTCT+AGG | - | tig0020882:50796-50815 | Msa1387130:intron | 35.0% | |
| GATTAAGGATTTGATGGGAA+CGG | + | tig0020882:50867-50886 | None:intergenic | 35.0% | |
| TTCCCATCAAATCCTTAATC+TGG | - | tig0020882:50867-50886 | Msa1387130:intron | 35.0% | |
| GATCATAAGAGCAAAGTAGA+TGG | - | tig0020882:50923-50942 | Msa1387130:intron | 35.0% | |
| AAACTAAATCCTTCACATGC+AGG | - | tig0020882:51088-51107 | Msa1387130:intron | 35.0% | |
| ! | CATCTTCAAGCACATTTTCT+TGG | + | tig0020882:51175-51194 | None:intergenic | 35.0% |
| AAATGTGCTTGAAGATGTAG+TGG | - | tig0020882:51178-51197 | Msa1387130:intron | 35.0% | |
| !! | GAAGATGTAGTGGCTATTTT+CGG | - | tig0020882:51188-51207 | Msa1387130:intron | 35.0% |
| AGCTTCAAAGCAAAGATCAA+AGG | - | tig0020882:51284-51303 | Msa1387130:intron | 35.0% | |
| GCTTCAAAGCAAAGATCAAA+GGG | - | tig0020882:51285-51304 | Msa1387130:intron | 35.0% | |
| CTTCAAAGCAAAGATCAAAG+GGG | - | tig0020882:51286-51305 | Msa1387130:intron | 35.0% | |
| TTCAAAGCAAAGATCAAAGG+GGG | - | tig0020882:51287-51306 | Msa1387130:intron | 35.0% | |
| GCTTGCAAAACATTGTTTCA+AGG | - | tig0020882:51372-51391 | Msa1387130:intron | 35.0% | |
| TTTAGTGTTTGACTCAACCT+GGG | + | tig0020882:51417-51436 | None:intergenic | 35.0% | |
| ! | TTTTAGTGTTTGACTCAACC+TGG | + | tig0020882:51418-51437 | None:intergenic | 35.0% |
| CATATGAAGCTAAATTCTGC+AGG | - | tig0020882:51514-51533 | Msa1387130:intron | 35.0% | |
| TTGTCATAGTCTGAAGATCA+AGG | - | tig0020882:51701-51720 | Msa1387130:CDS | 35.0% | |
| ! | TAGTCTGAAGATCAAGGTTT+TGG | - | tig0020882:51707-51726 | Msa1387130:CDS | 35.0% |
| AGAGTGCAGTTTACAGTAAA+AGG | - | tig0020882:51841-51860 | Msa1387130:intron | 35.0% | |
| CTATATCATTGAGACACCAT+TGG | + | tig0020882:51882-51901 | None:intergenic | 35.0% | |
| TAAGATCCTTTCAATCCTTG+CGG | + | tig0020882:52197-52216 | None:intergenic | 35.0% | |
| ATGTGCAAAGTAGGCATAAA+AGG | + | tig0020882:52232-52251 | None:intergenic | 35.0% | |
| TCCAAAGAATCAACATCACA+AGG | - | tig0020882:52344-52363 | Msa1387130:intron | 35.0% | |
| !! | ACCTTGTGATGTTGATTCTT+TGG | + | tig0020882:52348-52367 | None:intergenic | 35.0% |
| !! | TGATGAAAAAGGCATTCTCA+AGG | + | tig0020882:52573-52592 | None:intergenic | 35.0% |
| GTGGAAGAGAATGATGAAAA+AGG | + | tig0020882:52584-52603 | None:intergenic | 35.0% | |
| GAGAATTCTTCAGTAGGTTT+GGG | + | tig0020882:52731-52750 | None:intergenic | 35.0% | |
| TGAGAATTCTTCAGTAGGTT+TGG | + | tig0020882:52732-52751 | None:intergenic | 35.0% | |
| ATCACTGAGAATTCTTCAGT+AGG | + | tig0020882:52737-52756 | None:intergenic | 35.0% | |
| GATGCAGTGTTCCTATTAAA+AGG | + | tig0020882:52799-52818 | None:intergenic | 35.0% | |
| CATAACCACAATTGTTGTCA+TGG | - | tig0020882:52877-52896 | Msa1387130:intron | 35.0% | |
| AGCAGTGACACTTCAAATTA+TGG | - | tig0020882:53052-53071 | Msa1387130:intron | 35.0% | |
| GCAGTGACACTTCAAATTAT+GGG | - | tig0020882:53053-53072 | Msa1387130:intron | 35.0% | |
| CTTCAAATTATGGGTGTGTA+TGG | - | tig0020882:53062-53081 | Msa1387130:intron | 35.0% | |
| ACACACACAATCATCAAAGA+AGG | - | tig0020882:53217-53236 | Msa1387130:intron | 35.0% | |
| ACACAATCATCAAAGAAGGA+AGG | - | tig0020882:53221-53240 | Msa1387130:intron | 35.0% | |
| TCTCATCATTTGTAGTTGGA+GGG | + | tig0020882:53374-53393 | None:intergenic | 35.0% | |
| CAAGCATCAAGTATGATTGT+TGG | - | tig0020882:53414-53433 | Msa1387130:intron | 35.0% | |
| !!! | TTTTACTTGGAAAAAGTGCC+CGG | - | tig0020882:53489-53508 | Msa1387130:intron | 35.0% |
| TCTCATTGTGAATACCTAAG+AGG | + | tig0020882:53524-53543 | None:intergenic | 35.0% | |
| CTTAGGTATTCACAATGAGA+AGG | - | tig0020882:53524-53543 | Msa1387130:CDS | 35.0% | |
| AGGACTATGAGCTGAATATA+TGG | + | tig0020882:53556-53575 | None:intergenic | 35.0% | |
| ATGGAAGCTAATTATGCTTC+AGG | - | tig0020882:53849-53868 | Msa1387130:CDS | 35.0% | |
| TCATCCATTTCACTGTGTTG+GGG | + | tig0020882:49527-49546 | None:intergenic | 40.0% | |
| CTTCATCCATTTCACTGTGT+TGG | + | tig0020882:49529-49548 | None:intergenic | 40.0% | |
| !! | ACAACTCCAGTTTTAGCAAC+AGG | + | tig0020882:49660-49679 | None:intergenic | 40.0% |
| ACTGGAGTTGTTGCTAAGAT+TGG | - | tig0020882:49669-49688 | Msa1387130:CDS | 40.0% | |
| ! | GTTGTTGCTAAGATTGGTTC+TGG | - | tig0020882:49675-49694 | Msa1387130:CDS | 40.0% |
| !! | GCTCTAAGAGCAATAAAAGG+AGG | + | tig0020882:49705-49724 | None:intergenic | 40.0% |
| TATTGCTCTTAGAGCTGACA+TGG | - | tig0020882:49710-49729 | Msa1387130:CDS | 40.0% | |
| ! | TTGTCGAAATCAAGGTACCA+TGG | - | tig0020882:49892-49911 | Msa1387130:CDS | 40.0% |
| CATAAGTAGGGTAGTAGTGT+TGG | - | tig0020882:50204-50223 | Msa1387130:intron | 40.0% | |
| GAGAATGGAGAAAGAAACAG+TGG | - | tig0020882:50339-50358 | Msa1387130:intron | 40.0% | |
| AAGCTCATTGATGAGTGAAG+GGG | - | tig0020882:50713-50732 | Msa1387130:intron | 40.0% | |
| GCTTAAGCTAAGTATACAGG+TGG | - | tig0020882:50782-50801 | Msa1387130:intron | 40.0% | |
| ! | GCAGGAAGTATACCAGATTA+AGG | + | tig0020882:50882-50901 | None:intergenic | 40.0% |
| !! | CCAACAGGAACTTGTTGATT+GGG | - | tig0020882:50901-50920 | Msa1387130:intron | 40.0% |
| TCTTATATTCCAACCAGCTG+AGG | - | tig0020882:51121-51140 | Msa1387130:intron | 40.0% | |
| ! | GCATTGTCTTGATCCTGTTT+TGG | - | tig0020882:51328-51347 | Msa1387130:intron | 40.0% |
| GCAAAACATTGTTTCAAGGG+AGG | - | tig0020882:51376-51395 | Msa1387130:intron | 40.0% | |
| AAACATTGTTTCAAGGGAGG+TGG | - | tig0020882:51379-51398 | Msa1387130:intron | 40.0% | |
| CCTCCAAATGTTACTGAATC+AGG | + | tig0020882:51587-51606 | None:intergenic | 40.0% | |
| CCTGATTCAGTAACATTTGG+AGG | - | tig0020882:51584-51603 | Msa1387130:intron | 40.0% | |
| ACTAAGGCAAAGGATAGAAG+AGG | - | tig0020882:51643-51662 | Msa1387130:CDS | 40.0% | |
| TTGATTGAAGATGGCAGTGT+TGG | + | tig0020882:52089-52108 | None:intergenic | 40.0% | |
| GTCGTCATTGTTCAGATCAT+GGG | + | tig0020882:52142-52161 | None:intergenic | 40.0% | |
| ATCATTGACAGTTCGTGCAT+TGG | + | tig0020882:52279-52298 | None:intergenic | 40.0% | |
| TGTCTCCTCGGATTTATATC+AGG | - | tig0020882:52314-52333 | Msa1387130:CDS | 40.0% | |
| AACAGCCTGATATAAATCCG+AGG | + | tig0020882:52322-52341 | None:intergenic | 40.0% | |
| ! | ACATCACAAGGTGTTCTCAA+AGG | - | tig0020882:52356-52375 | Msa1387130:intron | 40.0% |
| GACATGAATCATTTGCCTCT+AGG | - | tig0020882:52411-52430 | Msa1387130:intron | 40.0% | |
| TACAGATTTCGATGGAACCT+TGG | - | tig0020882:52478-52497 | Msa1387130:intron | 40.0% | |
| ACAGATTTCGATGGAACCTT+GGG | - | tig0020882:52479-52498 | Msa1387130:intron | 40.0% | |
| CATTTCTCAACTTGAACGCA+AGG | - | tig0020882:52524-52543 | Msa1387130:intron | 40.0% | |
| TTCTTTAGCAGACAGAAGTG+TGG | + | tig0020882:52603-52622 | None:intergenic | 40.0% | |
| ! | TTCTTCAGTAGGTTTGGGAT+CGG | + | tig0020882:52726-52745 | None:intergenic | 40.0% |
| CTGAAGAATTCTCAGTGATG+TGG | - | tig0020882:52738-52757 | Msa1387130:intron | 40.0% | |
| GAGATTAACTGCTTGTGTCA+AGG | + | tig0020882:52774-52793 | None:intergenic | 40.0% | |
| GCAGTGTTCCTATTAAAAGG+AGG | + | tig0020882:52796-52815 | None:intergenic | 40.0% | |
| ACTGTCAAATGTGACCTATG+TGG | + | tig0020882:52843-52862 | None:intergenic | 40.0% | |
| ! | AAGGGCAAGCAAAAGTACAT+AGG | - | tig0020882:53304-53323 | Msa1387130:intron | 40.0% |
| TTTGTAGTTGGAGGGATTGT+TGG | + | tig0020882:53366-53385 | None:intergenic | 40.0% | |
| CTCTCATCATTTGTAGTTGG+AGG | + | tig0020882:53375-53394 | None:intergenic | 40.0% | |
| GATGAGAGAATACACCAACT+TGG | - | tig0020882:53387-53406 | Msa1387130:intron | 40.0% | |
| TTGATGCTTGTCTTCCAAGT+TGG | + | tig0020882:53404-53423 | None:intergenic | 40.0% | |
| AAAATCTTCACTCGCTGTGT+AGG | + | tig0020882:53466-53485 | None:intergenic | 40.0% | |
| GGTATTCACAATGAGAAGGT+TGG | - | tig0020882:53528-53547 | Msa1387130:CDS | 40.0% | |
| GATGAAGATGTTCTTCCCAT+TGG | - | tig0020882:53588-53607 | Msa1387130:CDS | 40.0% | |
| AGAACCCCAACACAGTGAAA+TGG | - | tig0020882:49520-49539 | Msa1387130:three_prime_UTR | 45.0% | |
| CAATGGCCTGTTGCTAAAAC+TGG | - | tig0020882:49651-49670 | Msa1387130:CDS | 45.0% | |
| CATGGATGCTTTGCCAATTC+AGG | - | tig0020882:49728-49747 | Msa1387130:CDS | 45.0% | |
| ACAATTACGCTGAAACCGTG+CGG | + | tig0020882:50589-50608 | None:intergenic | 45.0% | |
| GGTTTCAGCGTAATTGTGAC+TGG | - | tig0020882:50592-50611 | Msa1387130:intron | 45.0% | |
| AGCTCATTGATGAGTGAAGG+GGG | - | tig0020882:50714-50733 | Msa1387130:intron | 45.0% | |
| ATCAACAAGTTCCTGTTGGC+AGG | + | tig0020882:50900-50919 | None:intergenic | 45.0% | |
| !! | GCCAACAGGAACTTGTTGAT+TGG | - | tig0020882:50900-50919 | Msa1387130:intron | 45.0% |
| CCCAATCAACAAGTTCCTGT+TGG | + | tig0020882:50904-50923 | None:intergenic | 45.0% | |
| !! | ACCAAGAAGCATCGCAACAT+GGG | + | tig0020882:50975-50994 | None:intergenic | 45.0% |
| CAATAGTAGCCTGCATGTGA+AGG | + | tig0020882:51100-51119 | None:intergenic | 45.0% | |
| TTCCAACCAGCTGAGGAAAA+AGG | - | tig0020882:51128-51147 | Msa1387130:intron | 45.0% | |
| TTAGCGACACAGTATCCCTT+AGG | - | tig0020882:51218-51237 | Msa1387130:intron | 45.0% | |
| CATCCTGCTAAAAAATCCCC+CGG | + | tig0020882:51260-51279 | None:intergenic | 45.0% | |
| !!! | GGGGATTTTTTAGCAGGATG+TGG | - | tig0020882:51260-51279 | Msa1387130:intron | 45.0% |
| !!! | TGTTTTGGCCGCTTCAATGT+CGG | - | tig0020882:51343-51362 | Msa1387130:intron | 45.0% |
| GCTAATCACCGACATTGAAG+CGG | + | tig0020882:51354-51373 | None:intergenic | 45.0% | |
| GACTCAACCTGGGAATCTAA+AGG | + | tig0020882:51407-51426 | None:intergenic | 45.0% | |
| AATTCTGCAGGTCCTTTCTG+TGG | - | tig0020882:51526-51545 | Msa1387130:intron | 45.0% | |
| GTTCATGAGAAGACTCTGAG+TGG | + | tig0020882:51559-51578 | None:intergenic | 45.0% | |
| GCTTCAATGCACTAAGGCAA+AGG | - | tig0020882:51633-51652 | Msa1387130:CDS | 45.0% | |
| !!! | GTTTTGGAGACCTCTACCAA+TGG | - | tig0020882:51863-51882 | Msa1387130:intron | 45.0% |
| CATTGAGACACCATTGGTAG+AGG | + | tig0020882:51876-51895 | None:intergenic | 45.0% | |
| CGTCGTCATTGTTCAGATCA+TGG | + | tig0020882:52143-52162 | None:intergenic | 45.0% | |
| TGATCTGAACAATGACGACG+CGG | - | tig0020882:52143-52162 | Msa1387130:intron | 45.0% | |
| ! | TTTCTAGTGCTCTGTCTCCT+CGG | - | tig0020882:52302-52321 | Msa1387130:CDS | 45.0% |
| ATGTCTAGCATCTGCTACTC+AGG | + | tig0020882:52396-52415 | None:intergenic | 45.0% | |
| TGGAACCTTGGGTCTATTGA+AGG | - | tig0020882:52490-52509 | Msa1387130:intron | 45.0% | |
| AACCTTGGGTCTATTGAAGG+TGG | - | tig0020882:52493-52512 | Msa1387130:intron | 45.0% | |
| TTCCACCTTCAATAGACCCA+AGG | + | tig0020882:52498-52517 | None:intergenic | 45.0% | |
| ! | GGTTTGGGATCGGATAAACT+GGG | + | tig0020882:52716-52735 | None:intergenic | 45.0% |
| ! | AGGTTTGGGATCGGATAAAC+TGG | + | tig0020882:52717-52736 | None:intergenic | 45.0% |
| TGTGTCTGCAATTGCAGTTG+TGG | + | tig0020882:52943-52962 | None:intergenic | 45.0% | |
| ! | TGTAACACATGTACCGGTGT+TGG | + | tig0020882:53091-53110 | None:intergenic | 45.0% |
| ACTGCAGAGGTTGAGTTCTT+TGG | - | tig0020882:53330-53349 | Msa1387130:intron | 45.0% | |
| ACCTAAGAGGAAAAGTGAGC+CGG | + | tig0020882:53511-53530 | None:intergenic | 45.0% | |
| !!! | ATTATTTAAATAAGTTTTAT+AGG | - | tig0020882:51051-51070 | Msa1387130:intron | 5.0% |
| AGGCGTGAGCTTGACAAGTT+AGG | - | tig0020882:49618-49637 | Msa1387130:CDS | 50.0% | |
| TGAGGATGCAAATGCGGTTG+CGG | + | tig0020882:50515-50534 | None:intergenic | 50.0% | |
| CAATTACGCTGAAACCGTGC+GGG | + | tig0020882:50588-50607 | None:intergenic | 50.0% | |
| CTGGTATACTTCCTGCCAAC+AGG | - | tig0020882:50886-50905 | Msa1387130:intron | 50.0% | |
| !! | CACCAAGAAGCATCGCAACA+TGG | + | tig0020882:50976-50995 | None:intergenic | 50.0% |
| ! | TGCCTTTTTCCTCAGCTGGT+TGG | + | tig0020882:51133-51152 | None:intergenic | 50.0% |
| ! | CCTATGCCTTTTTCCTCAGC+TGG | + | tig0020882:51137-51156 | None:intergenic | 50.0% |
| ! | CCAGCTGAGGAAAAAGGCAT+AGG | - | tig0020882:51134-51153 | Msa1387130:intron | 50.0% |
| CGTGATGCAACAACGCCTAA+GGG | + | tig0020882:51236-51255 | None:intergenic | 50.0% | |
| ! | CCTTAGGCGTTGTTGCATCA+CGG | - | tig0020882:51234-51253 | Msa1387130:intron | 50.0% |
| GACATTGAAGCGGCCAAAAC+AGG | + | tig0020882:51344-51363 | None:intergenic | 50.0% | |
| GGTGGATCCTTTAGATTCCC+AGG | - | tig0020882:51397-51416 | Msa1387130:intron | 50.0% | |
| AGTGGACCATTGCCACAGAA+AGG | + | tig0020882:51541-51560 | None:intergenic | 50.0% | |
| TCCTTTCAATCCTTGCGGCA+AGG | + | tig0020882:52192-52211 | None:intergenic | 50.0% | |
| CAATTGTGCTGTGGCCACAT+AGG | - | tig0020882:52826-52845 | Msa1387130:intron | 50.0% | |
| GTCTGCAATTGCAGTTGTGG+AGG | + | tig0020882:52940-52959 | None:intergenic | 50.0% | |
| AGTACATAGGTGCACTGCAG+AGG | - | tig0020882:53317-53336 | Msa1387130:intron | 50.0% | |
| TCTTCACTCGCTGTGTAGGT+TGG | + | tig0020882:53462-53481 | None:intergenic | 50.0% | |
| CCTAAGAGGAAAAGTGAGCC+GGG | + | tig0020882:53510-53529 | None:intergenic | 50.0% | |
| GCATGTATCGCAGCACCAAT+GGG | + | tig0020882:53606-53625 | None:intergenic | 50.0% | |
| TGCATGTATCGCAGCACCAA+TGG | + | tig0020882:53607-53626 | None:intergenic | 50.0% | |
| ! | AACTGCGCATTTTGCCCGCA+CGG | - | tig0020882:50571-50590 | Msa1387130:intron | 55.0% |
| GCCCATGTTGCGATGCTTCT+TGG | - | tig0020882:50971-50990 | Msa1387130:intron | 55.0% | |
| CCGTGATGCAACAACGCCTA+AGG | + | tig0020882:51237-51256 | None:intergenic | 55.0% | |
| GCAGGTCCTTTCTGTGGCAA+TGG | - | tig0020882:51532-51551 | Msa1387130:intron | 55.0% | |
| GCCTTGCCGCAAGGATTGAA+AGG | - | tig0020882:52188-52207 | Msa1387130:intron | 55.0% | |
| TCGCGACTGCAATTGTGCTG+TGG | - | tig0020882:52817-52836 | Msa1387130:intron | 55.0% | |
| GTGTGTATGGCGTCCAACAC+CGG | - | tig0020882:53075-53094 | Msa1387130:intron | 55.0% | |
| !! | CCCGGCTCACTTTTCCTCTT+AGG | - | tig0020882:53507-53526 | Msa1387130:intron | 55.0% |
| ! | AGGCGTTGTTGCATCACGGC+CGG | - | tig0020882:51238-51257 | Msa1387130:intron | 60.0% |
| !!! | CGGCCGGGGGATTTTTTAGC+AGG | - | tig0020882:51254-51273 | Msa1387130:intron | 60.0% |
| TGCGGCAAGGCTCGTACAAG+AGG | + | tig0020882:52179-52198 | None:intergenic | 60.0% | |
| CTTGTACGAGCCTTGCCGCA+AGG | - | tig0020882:52179-52198 | Msa1387130:intron | 60.0% | |
| GGAAGGTGAGCATGGCCTAG+AGG | + | tig0020882:52429-52448 | None:intergenic | 60.0% | |
| AGGCCATGCTCACCTTCCTC+TGG | - | tig0020882:52431-52450 | Msa1387130:intron | 60.0% | |
| GGCGTTGTTGCATCACGGCC+GGG | - | tig0020882:51239-51258 | Msa1387130:intron | 65.0% | |
| GCGTTGTTGCATCACGGCCG+GGG | - | tig0020882:51240-51259 | Msa1387130:intron | 65.0% | |
| CGTTGTTGCATCACGGCCGG+GGG | - | tig0020882:51241-51260 | Msa1387130:intron | 65.0% | |
| GCGCCAGAGGAAGGTGAGCA+TGG | + | tig0020882:52437-52456 | None:intergenic | 65.0% | |
| AACAATGGCGACGGCGCCAG+AGG | + | tig0020882:52450-52469 | None:intergenic | 65.0% | |
| ATGGCGACGGCGCCAGAGGA+AGG | + | tig0020882:52446-52465 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020882 | gene | 49387 | 53878 | 49387 | ID=Msa1387130;Name=Msa1387130 |
| tig0020882 | mRNA | 49387 | 53878 | 49387 | ID=Msa1387130-mRNA-1;Parent=Msa1387130;Name=Msa1387130-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.6|0.5|1|0.6|0.66|6|204|407 |
| tig0020882 | exon | 49387 | 49968 | 49387 | ID=Msa1387130-mRNA-1:exon:10515;Parent=Msa1387130-mRNA-1 |
| tig0020882 | exon | 51601 | 51729 | 51601 | ID=Msa1387130-mRNA-1:exon:10514;Parent=Msa1387130-mRNA-1 |
| tig0020882 | exon | 51922 | 52155 | 51922 | ID=Msa1387130-mRNA-1:exon:10513;Parent=Msa1387130-mRNA-1 |
| tig0020882 | exon | 52232 | 52357 | 52232 | ID=Msa1387130-mRNA-1:exon:10512;Parent=Msa1387130-mRNA-1 |
| tig0020882 | exon | 53516 | 53752 | 53516 | ID=Msa1387130-mRNA-1:exon:10511;Parent=Msa1387130-mRNA-1 |
| tig0020882 | exon | 53759 | 53878 | 53759 | ID=Msa1387130-mRNA-1:exon:10510;Parent=Msa1387130-mRNA-1 |
| tig0020882 | CDS | 53759 | 53878 | 53759 | ID=Msa1387130-mRNA-1:cds;Parent=Msa1387130-mRNA-1 |
| tig0020882 | CDS | 53516 | 53752 | 53516 | ID=Msa1387130-mRNA-1:cds;Parent=Msa1387130-mRNA-1 |
| tig0020882 | CDS | 52232 | 52357 | 52232 | ID=Msa1387130-mRNA-1:cds;Parent=Msa1387130-mRNA-1 |
| tig0020882 | CDS | 51922 | 52155 | 51922 | ID=Msa1387130-mRNA-1:cds;Parent=Msa1387130-mRNA-1 |
| tig0020882 | CDS | 51601 | 51729 | 51601 | ID=Msa1387130-mRNA-1:cds;Parent=Msa1387130-mRNA-1 |
| tig0020882 | CDS | 49591 | 49968 | 49591 | ID=Msa1387130-mRNA-1:cds;Parent=Msa1387130-mRNA-1 |
| tig0020882 | three_prime_UTR | 49387 | 49590 | 49387 | ID=Msa1387130-mRNA-1:three_prime_utr;Parent=Msa1387130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
