Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1194460 | XP_003628629.1 | 93.655 | 394 | 13 | 1 | 19 | 400 | 40 | 433 | 0.0 | 760 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1194460 | sp|Q84XG9|ILL1_ORYSI | 52.062 | 388 | 171 | 3 | 19 | 391 | 37 | 424 | 1.54e-139 | 408 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0797350 | Msa1194460 | 0.801540 | 8.578886e-49 | -8.615850e-47 |
| Msa1194460 | Msa1227600 | 0.807826 | 4.180578e-50 | -8.615850e-47 |
| Msa1194460 | Msa1290110 | 0.891140 | 5.210653e-74 | -8.615850e-47 |
| Msa1194460 | Msa1387130 | 0.804864 | 1.760603e-49 | -8.615850e-47 |
| Msa1194460 | Msa1397890 | 0.802337 | 5.886045e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1194460 | MtrunA17_Chr8g0364301 | 93.655 | 394 | 13 | 1 | 19 | 400 | 40 | 433 | 0.0 | 760 |
| Msa1194460 | MtrunA17_Chr8g0371561 | 82.116 | 397 | 58 | 2 | 6 | 389 | 33 | 429 | 0.0 | 667 |
| Msa1194460 | MtrunA17_Chr3g0124881 | 53.230 | 387 | 167 | 2 | 19 | 391 | 85 | 471 | 6.17e-147 | 425 |
| Msa1194460 | MtrunA17_Chr2g0330661 | 52.764 | 398 | 174 | 2 | 8 | 391 | 31 | 428 | 2.56e-143 | 415 |
| Msa1194460 | MtrunA17_Chr2g0330721 | 53.061 | 392 | 170 | 3 | 14 | 391 | 42 | 433 | 8.51e-141 | 409 |
| Msa1194460 | MtrunA17_Chr2g0328461 | 52.296 | 392 | 173 | 3 | 14 | 391 | 41 | 432 | 1.24e-136 | 398 |
| Msa1194460 | MtrunA17_Chr2g0330671 | 49.630 | 405 | 190 | 2 | 1 | 391 | 28 | 432 | 2.36e-136 | 397 |
| Msa1194460 | MtrunA17_Chr8g0341471 | 52.956 | 389 | 167 | 4 | 8 | 380 | 28 | 416 | 9.41e-136 | 395 |
| Msa1194460 | MtrunA17_Chr3g0128101 | 48.168 | 382 | 184 | 2 | 30 | 397 | 39 | 420 | 1.75e-126 | 371 |
| Msa1194460 | MtrunA17_Chr8g0364461 | 55.556 | 306 | 94 | 7 | 99 | 389 | 96 | 374 | 2.18e-106 | 320 |
| Msa1194460 | MtrunA17_Chr2g0328481 | 38.835 | 309 | 130 | 3 | 142 | 391 | 4 | 312 | 1.03e-63 | 207 |
| Msa1194460 | MtrunA17_Chr2g0330711 | 65.354 | 127 | 44 | 0 | 14 | 140 | 33 | 159 | 1.95e-53 | 175 |
| Msa1194460 | MtrunA17_Chr2g0328471 | 61.940 | 134 | 51 | 0 | 8 | 141 | 27 | 160 | 4.15e-53 | 175 |
| Msa1194460 | MtrunA17_Chr3g0128121 | 63.415 | 41 | 15 | 0 | 114 | 154 | 1 | 41 | 6.37e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1194460 | AT1G51760.1 | 51.163 | 387 | 175 | 2 | 19 | 391 | 36 | 422 | 6.29e-137 | 399 |
| Msa1194460 | AT5G56660.1 | 49.875 | 401 | 184 | 4 | 5 | 391 | 25 | 422 | 1.70e-130 | 382 |
| Msa1194460 | AT1G44350.1 | 50.538 | 372 | 169 | 2 | 19 | 378 | 77 | 445 | 1.89e-130 | 383 |
| Msa1194460 | AT5G54140.1 | 49.735 | 378 | 175 | 3 | 29 | 391 | 39 | 416 | 4.02e-130 | 381 |
| Msa1194460 | AT1G51780.1 | 49.096 | 387 | 183 | 2 | 19 | 391 | 36 | 422 | 4.73e-130 | 381 |
| Msa1194460 | AT5G56650.1 | 50.646 | 387 | 174 | 4 | 19 | 391 | 38 | 421 | 1.01e-127 | 375 |
| Msa1194460 | AT3G02875.1 | 46.701 | 394 | 193 | 3 | 19 | 395 | 40 | 433 | 2.93e-126 | 372 |
| Msa1194460 | AT5G56650.2 | 54.945 | 273 | 107 | 3 | 19 | 277 | 38 | 308 | 1.27e-95 | 288 |
| Msa1194460 | AT3G02875.2 | 50.368 | 272 | 121 | 2 | 19 | 276 | 40 | 311 | 1.48e-89 | 274 |
| Msa1194460 | AT3G02875.3 | 51.575 | 254 | 105 | 4 | 19 | 254 | 40 | 293 | 7.31e-78 | 243 |
Find 91 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCCATTTCACTGTGTT+CGG | 0.270651 | 8_1:-41627312 | None:intergenic |
| GCCCATGTTGCGATGCTTCT+TGG | 0.288317 | 8_1:+41628758 | Msa1194460:CDS |
| CCTCCAAATGTTACTGAATC+AGG | 0.311713 | 8_1:-41629371 | None:intergenic |
| GCATTGTCTTGATCCTGTTT+TGG | 0.317241 | 8_1:+41629115 | Msa1194460:CDS |
| TTCCAACCAGCTGAGGAAAA+AGG | 0.321874 | 8_1:+41628915 | Msa1194460:CDS |
| AGAAATGAAAGATAAATTAA+AGG | 0.322052 | 8_1:+41628799 | Msa1194460:CDS |
| AACTCCTCATATCCAAGTTC+TGG | 0.329116 | 8_1:-41627363 | None:intergenic |
| CTAATTATGCTTCAGGAGTT+CGG | 0.339989 | 8_1:+41631649 | Msa1194460:three_prime_UTR |
| ATGGAAGCTAATTATGCTTC+AGG | 0.340847 | 8_1:+41631642 | Msa1194460:three_prime_UTR |
| ACTGCAGAGGTTGAGTTCTT+TGG | 0.343440 | 8_1:+41631123 | Msa1194460:CDS |
| GTTGTAGCTAAAATCGGTTC+TGG | 0.344361 | 8_1:+41627462 | Msa1194460:CDS |
| ATTCCTGATTCAGTAACATT+TGG | 0.347097 | 8_1:+41629368 | Msa1194460:CDS |
| CAGTGGCATGTTGCTAAAAC+TGG | 0.347945 | 8_1:+41627438 | Msa1194460:CDS |
| TCATCCATTTCACTGTGTTC+GGG | 0.362128 | 8_1:-41627311 | None:intergenic |
| AGGACTATGAGCTGAATATA+TGG | 0.368562 | 8_1:-41631346 | None:intergenic |
| TAATTATGCTTCAGGAGTTC+GGG | 0.378638 | 8_1:+41631650 | Msa1194460:three_prime_UTR |
| CAAGTCTTAGATGATTGTTT+AGG | 0.382508 | 8_1:-41627179 | None:intergenic |
| TCAGCTCTAAGAGCAATAAA+AGG | 0.385249 | 8_1:-41627492 | None:intergenic |
| AATTAGCCCAACATATTAGA+TGG | 0.387344 | 8_1:+41631623 | Msa1194460:three_prime_UTR |
| ATCCAAGTTCTGGATATTCA+TGG | 0.393550 | 8_1:-41627353 | None:intergenic |
| GCCAACAGGAACTTGTTGAT+TGG | 0.403152 | 8_1:+41628687 | Msa1194460:intron |
| CTCTCATCATTTGTAGTTGG+AGG | 0.409256 | 8_1:-41631165 | None:intergenic |
| GACATTGAAGCGGCCAAAAC+AGG | 0.415065 | 8_1:-41629128 | None:intergenic |
| GATCATAAGAGCAAAGTAGA+TGG | 0.419049 | 8_1:+41628710 | Msa1194460:CDS |
| ATTCTCTCATCATTTGTAGT+TGG | 0.422375 | 8_1:-41631168 | None:intergenic |
| AGGCGTGAGCTTGACAAGTT+AGG | 0.426458 | 8_1:+41627405 | Msa1194460:CDS |
| CCAACAGGAACTTGTTGATT+GGG | 0.431956 | 8_1:+41628688 | Msa1194460:intron |
| GGCGTTGTTGCATCACGGCC+GGG | 0.434174 | 8_1:+41629026 | Msa1194460:CDS |
| ACTGGAGTTGTAGCTAAAAT+CGG | 0.439655 | 8_1:+41627456 | Msa1194460:CDS |
| GCAGGTCCTTTCTGTGGCAA+TGG | 0.442153 | 8_1:+41629319 | Msa1194460:intron |
| TTTGTAGTTGGAGGGATTGT+TGG | 0.442878 | 8_1:-41631156 | None:intergenic |
| CCTGATTCAGTAACATTTGG+AGG | 0.445538 | 8_1:+41629371 | Msa1194460:CDS |
| AGGCGTTGTTGCATCACGGC+CGG | 0.446779 | 8_1:+41629025 | Msa1194460:CDS |
| TAGCTTCCATCTAATATGTT+GGG | 0.447610 | 8_1:-41631629 | None:intergenic |
| CAAGCATCAAGTATGATTGT+TGG | 0.450241 | 8_1:+41631207 | Msa1194460:CDS |
| CCGTGATGCAACAACGCCTA+AGG | 0.452190 | 8_1:-41629021 | None:intergenic |
| ACAACCCGAACACAGTGAAA+TGG | 0.456880 | 8_1:+41627307 | Msa1194460:CDS |
| GGTGGATCCTTTAGATTCCC+AGG | 0.458247 | 8_1:+41629184 | Msa1194460:CDS |
| ATCCATGAATATCCAGAACT+TGG | 0.462489 | 8_1:+41627351 | Msa1194460:CDS |
| GCTTGCAAAACATTGTTTCA+AGG | 0.463506 | 8_1:+41629159 | Msa1194460:CDS |
| CATGGATGCTTTGCCAATCC+AGG | 0.471027 | 8_1:+41627515 | Msa1194460:CDS |
| TTAGCTTCCATCTAATATGT+TGG | 0.474036 | 8_1:-41631630 | None:intergenic |
| CAGAAGAGAAATTATAATAG+AGG | 0.475175 | 8_1:+41631502 | Msa1194460:three_prime_UTR |
| GCGTTGTTGCATCACGGCCG+GGG | 0.478016 | 8_1:+41629027 | Msa1194460:CDS |
| CCACTTTACCACATGAATGA+TGG | 0.485530 | 8_1:+41627155 | None:intergenic |
| GGTATTCACAATGAGAAGGT+TGG | 0.489119 | 8_1:+41631321 | Msa1194460:CDS |
| GCTTCAAAGCAAAGATCAAA+GGG | 0.489839 | 8_1:+41629072 | Msa1194460:CDS |
| AAACATTGTTTCAAGGGAGG+TGG | 0.494015 | 8_1:+41629166 | Msa1194460:CDS |
| CTTGCAAAACATTGTTTCAA+GGG | 0.503037 | 8_1:+41629160 | Msa1194460:CDS |
| CACCAAGAAGCATCGCAACA+TGG | 0.504864 | 8_1:-41628760 | None:intergenic |
| TCTCATTGTGAATACCTAAG+AGG | 0.507391 | 8_1:-41631314 | None:intergenic |
| TCATGACAAGTTCTGTCATA+AGG | 0.509424 | 8_1:+41627385 | Msa1194460:CDS |
| TTGATGCTTGTCTTCCAAGT+TGG | 0.517245 | 8_1:-41631194 | None:intergenic |
| TCTCATCATTTGTAGTTGGA+GGG | 0.526258 | 8_1:-41631164 | None:intergenic |
| GCATGTATCGGAGCACCAAT+GGG | 0.528595 | 8_1:-41631396 | None:intergenic |
| AATAGTAGTTTGTAATAGCA+AGG | 0.528710 | 8_1:-41631543 | None:intergenic |
| ATATCCAGAACTTGGATATG+AGG | 0.531022 | 8_1:+41627359 | Msa1194460:CDS |
| GACTCAACCTGGGAATCTAA+AGG | 0.533267 | 8_1:-41629191 | None:intergenic |
| AGCTTCAAAGCAAAGATCAA+AGG | 0.536414 | 8_1:+41629071 | Msa1194460:CDS |
| GATGAAGATGTTCTTCCCAT+TGG | 0.537284 | 8_1:+41631381 | Msa1194460:CDS |
| TATTGCTCTTAGAGCTGACA+TGG | 0.551848 | 8_1:+41627497 | Msa1194460:CDS |
| AAAATCTTCACTCGCTGTGT+AGG | 0.554083 | 8_1:-41631256 | None:intergenic |
| ATCATAAGAGCAAAGTAGAT+GGG | 0.556957 | 8_1:+41628711 | Msa1194460:CDS |
| TCTTCACTCGCTGTGTAGGT+TGG | 0.559495 | 8_1:-41631252 | None:intergenic |
| CCTTAGGCGTTGTTGCATCA+CGG | 0.566026 | 8_1:+41629021 | Msa1194460:CDS |
| AGAGCAAATGCTGCATGTAT+CGG | 0.567862 | 8_1:-41631408 | None:intergenic |
| GATGAGAGAATACACCAACT+TGG | 0.573593 | 8_1:+41631180 | Msa1194460:CDS |
| CTTAGGTATTCACAATGAGA+AGG | 0.574770 | 8_1:+41631317 | Msa1194460:CDS |
| TGCATGTATCGGAGCACCAA+TGG | 0.579134 | 8_1:-41631397 | None:intergenic |
| AAAAGAGCTTCAATGCACTA+AGG | 0.580878 | 8_1:+41629414 | Msa1194460:CDS |
| AATTCTGCAGGTCCTTTCTG+TGG | 0.585555 | 8_1:+41629313 | Msa1194460:intron |
| AGTGGACCATTGCCACAGAA+AGG | 0.591959 | 8_1:-41629325 | None:intergenic |
| TCTTATATTCCAACCAGCTG+AGG | 0.592807 | 8_1:+41628908 | Msa1194460:CDS |
| GCAAAACATTGTTTCAAGGG+AGG | 0.595201 | 8_1:+41629163 | Msa1194460:CDS |
| GTACTATTAAATATCTCAGA+AGG | 0.601606 | 8_1:+41631583 | Msa1194460:three_prime_UTR |
| CGTGATGCAACAACGCCTAA+GGG | 0.604454 | 8_1:-41629020 | None:intergenic |
| GCTTCAATGCACTAAGGCAA+AGG | 0.606705 | 8_1:+41629420 | Msa1194460:CDS |
| TTAGCGACACAGTATCCCTT+AGG | 0.606827 | 8_1:+41629005 | Msa1194460:intron |
| CGTTGTTGCATCACGGCCGG+GGG | 0.609021 | 8_1:+41629028 | Msa1194460:CDS |
| AAGGGCAAGCAAAAGTACAT+AGG | 0.610471 | 8_1:+41631097 | Msa1194460:CDS |
| ACCAAGAAGCATCGCAACAT+GGG | 0.617744 | 8_1:-41628759 | None:intergenic |
| GCTCTAAGAGCAATAAAAGG+AGG | 0.618553 | 8_1:-41627489 | None:intergenic |
| TGAGATATTTAATAGTACAA+TGG | 0.618607 | 8_1:-41631578 | None:intergenic |
| AGTACATAGGTGCACTGCAG+AGG | 0.622649 | 8_1:+41631110 | Msa1194460:CDS |
| GCTAATCACCGACATTGAAG+CGG | 0.632072 | 8_1:-41629138 | None:intergenic |
| TTCAAAGCAAAGATCAAAGG+GGG | 0.633646 | 8_1:+41629074 | Msa1194460:CDS |
| ACTAAGGCAAAGGATAGAAG+AGG | 0.641015 | 8_1:+41629430 | Msa1194460:CDS |
| TCTTCATCAATAAAATAGTG+AGG | 0.665866 | 8_1:-41631366 | None:intergenic |
| AGTTAGGAGTATCTTACCAG+TGG | 0.686255 | 8_1:+41627421 | Msa1194460:CDS |
| GTTCATGAGAAGACTCTGAG+TGG | 0.725565 | 8_1:-41629343 | None:intergenic |
| CTTCAAAGCAAAGATCAAAG+GGG | 0.730699 | 8_1:+41629073 | Msa1194460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACAGTAAAATTA+AGG | + | chr8_1:41628064-41628083 | Msa1194460:intron | 10.0% |
| !!! | ATGTCAATTATTTTTTATTA+AGG | + | chr8_1:41628159-41628178 | Msa1194460:intron | 10.0% |
| !!! | TTATTTTTTATTAAGGAAAG+TGG | + | chr8_1:41628166-41628185 | Msa1194460:intron | 15.0% |
| !! | TAGTTTAATATTACCATTTA+CGG | + | chr8_1:41628529-41628548 | Msa1194460:intron | 15.0% |
| !! | AGAAATGAAAGATAAATTAA+AGG | + | chr8_1:41628799-41628818 | Msa1194460:CDS | 15.0% |
| !!! | ACAATTTTTCAAATTGTTAT+TGG | + | chr8_1:41630899-41630918 | Msa1194460:intron | 15.0% |
| !!! | GTATTTTTATTTTTGTTACC+TGG | - | chr8_1:41627536-41627555 | None:intergenic | 20.0% |
| !!! | TATAATTTTTGCAAAAATCG+CGG | + | chr8_1:41627724-41627743 | Msa1194460:intron | 20.0% |
| !! | TGATCTTTGTAAAAAATTTG+AGG | + | chr8_1:41627851-41627870 | Msa1194460:intron | 20.0% |
| !! | TTACTATTTATTACCCATAT+AGG | + | chr8_1:41627904-41627923 | Msa1194460:intron | 20.0% |
| !! | AGGTACAATATTAATAGAAA+AGG | - | chr8_1:41628220-41628239 | None:intergenic | 20.0% |
| !! | AAAAACAAATCAGATGTTAT+AGG | - | chr8_1:41628438-41628457 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTATATTGCAAGT+TGG | + | chr8_1:41628449-41628468 | Msa1194460:intron | 20.0% |
| !! | AAGATAAATTAAAGGTAAAG+TGG | + | chr8_1:41628807-41628826 | Msa1194460:intron | 20.0% |
| !! | TTGATATTGTTGAAAATTAC+AGG | - | chr8_1:41629574-41629593 | None:intergenic | 20.0% |
| !!! | TGTAATTTTCAACAATATCA+AGG | + | chr8_1:41629573-41629592 | Msa1194460:intron | 20.0% |
| !! | ATCTGTAAATATCAAAACAA+TGG | - | chr8_1:41630252-41630271 | None:intergenic | 20.0% |
| !!! | AGTCTATAATTTATAGGTTT+TGG | + | chr8_1:41630698-41630717 | Msa1194460:intron | 20.0% |
| !! | TGAGATATTTAATAGTACAA+TGG | - | chr8_1:41631581-41631600 | None:intergenic | 20.0% |
| !!! | TTTATTTTTGTTACCTGGAT+TGG | - | chr8_1:41627531-41627550 | None:intergenic | 25.0% |
| !! | AACACAAGAAAGTGAAATTT+TGG | - | chr8_1:41627565-41627584 | None:intergenic | 25.0% |
| ! | ATTTGAGGAAAAAAATGAGA+AGG | + | chr8_1:41627866-41627885 | Msa1194460:intron | 25.0% |
| !! | CAATTTTTGCTTACCTATAT+GGG | - | chr8_1:41627920-41627939 | None:intergenic | 25.0% |
| !! | ACAATTTTTGCTTACCTATA+TGG | - | chr8_1:41627921-41627940 | None:intergenic | 25.0% |
| ! | TTCTATTAATATTGTACCTG+AGG | + | chr8_1:41628221-41628240 | Msa1194460:intron | 25.0% |
| !! | TCTTTTGTAATACCAATTCA+TGG | + | chr8_1:41628262-41628281 | Msa1194460:intron | 25.0% |
| !!! | TTAATCTTCTAGGACTAATT+TGG | + | chr8_1:41628593-41628612 | Msa1194460:intron | 25.0% |
| ! | ATATTTCTTGGAAGCAATTA+CGG | - | chr8_1:41628619-41628638 | None:intergenic | 25.0% |
| ! | ACTTATTGTGCTATATTTCT+TGG | - | chr8_1:41628631-41628650 | None:intergenic | 25.0% |
| ! | AATTAAAGGTAAAGTGGAAT+TGG | + | chr8_1:41628813-41628832 | Msa1194460:intron | 25.0% |
| ! | AGAAATAATGTGTGAAAACT+TGG | - | chr8_1:41629238-41629257 | None:intergenic | 25.0% |
| ! | TGAAAATTACAGGAAAAACA+CGG | - | chr8_1:41629564-41629583 | None:intergenic | 25.0% |
| ! | TTGATATTTACAGATTTCGA+TGG | + | chr8_1:41630257-41630276 | Msa1194460:intron | 25.0% |
| !! | TAACTGAATCACAAACATTT+TGG | + | chr8_1:41630444-41630463 | Msa1194460:intron | 25.0% |
| ! | AAGTGCAGTCTATAATTTAT+AGG | + | chr8_1:41630692-41630711 | Msa1194460:intron | 25.0% |
| !!! | CTATAATTTATAGGTTTTGG+AGG | + | chr8_1:41630701-41630720 | Msa1194460:intron | 25.0% |
| ! | ATGTTGTGATTCTTGATATT+GGG | - | chr8_1:41630778-41630797 | None:intergenic | 25.0% |
| ! | TATGTTGTGATTCTTGATAT+TGG | - | chr8_1:41630779-41630798 | None:intergenic | 25.0% |
| !!! | ATAATGAAGGCTCTAAATTA+CGG | - | chr8_1:41630807-41630826 | None:intergenic | 25.0% |
| !!! | TTTGTTTGACTTTTTTGTAC+AGG | + | chr8_1:41631068-41631087 | Msa1194460:intron | 25.0% |
| !!! | TTTTTTGTACAGGTTATCAA+AGG | + | chr8_1:41631078-41631097 | Msa1194460:intron | 25.0% |
| !! | TTTTTGTACAGGTTATCAAA+GGG | + | chr8_1:41631079-41631098 | Msa1194460:intron | 25.0% |
| !! | TGAAGATTTTGCATTTTACT+TGG | + | chr8_1:41631269-41631288 | Msa1194460:CDS | 25.0% |
| ! | TCTTCATCAATAAAATAGTG+AGG | - | chr8_1:41631369-41631388 | None:intergenic | 25.0% |
| ! | CAGAAGAGAAATTATAATAG+AGG | + | chr8_1:41631502-41631521 | Msa1194460:three_prime_UTR | 25.0% |
| !! | AATAGTAGTTTGTAATAGCA+AGG | - | chr8_1:41631546-41631565 | None:intergenic | 25.0% |
| ! | GTACTATTAAATATCTCAGA+AGG | + | chr8_1:41631583-41631602 | Msa1194460:three_prime_UTR | 25.0% |
| CAAGTCTTAGATGATTGTTT+AGG | - | chr8_1:41627182-41627201 | None:intergenic | 30.0% | |
| ACTGAAAAATCAGATTCTTG+AGG | + | chr8_1:41627278-41627297 | Msa1194460:intron | 30.0% | |
| AAACTTCAACAAAATCACCA+TGG | - | chr8_1:41627699-41627718 | None:intergenic | 30.0% | |
| CAAAACATGCAGAAACATTA+TGG | + | chr8_1:41627782-41627801 | Msa1194460:intron | 30.0% | |
| GCATGTTTGATATAATGCTA+TGG | + | chr8_1:41627811-41627830 | Msa1194460:intron | 30.0% | |
| GTATGAGAAAAGATGAAAAG+TGG | + | chr8_1:41627939-41627958 | Msa1194460:intron | 30.0% | |
| TGTCATCATTCTTCATAAGT+AGG | + | chr8_1:41627978-41627997 | Msa1194460:intron | 30.0% | |
| GTCATCATTCTTCATAAGTA+GGG | + | chr8_1:41627979-41627998 | Msa1194460:intron | 30.0% | |
| !! | AATTGAAGAGTTTCAAGTTG+TGG | + | chr8_1:41628018-41628037 | Msa1194460:intron | 30.0% |
| !! | ATTGAAGAGTTTCAAGTTGT+GGG | + | chr8_1:41628019-41628038 | Msa1194460:intron | 30.0% |
| ACAAACTTCAGAATTAATGC+AGG | - | chr8_1:41628092-41628111 | None:intergenic | 30.0% | |
| TCTTGTCATGTAATTGAGAA+TGG | + | chr8_1:41628111-41628130 | Msa1194460:intron | 30.0% | |
| ! | AATTAGCTGATTTAATCCTC+AGG | - | chr8_1:41628240-41628259 | None:intergenic | 30.0% |
| ! | CGAAATTTGAAACCATGAAT+TGG | - | chr8_1:41628277-41628296 | None:intergenic | 30.0% |
| TTATATTGAGGATGCAAATG+CGG | - | chr8_1:41628308-41628327 | None:intergenic | 30.0% | |
| CCTCAAAATCGTTTATATTG+AGG | - | chr8_1:41628320-41628339 | None:intergenic | 30.0% | |
| ! | CCTCAATATAAACGATTTTG+AGG | + | chr8_1:41628317-41628336 | Msa1194460:intron | 30.0% |
| ATGTTATAGGACATAGTAAG+AGG | - | chr8_1:41628425-41628444 | None:intergenic | 30.0% | |
| TACCAGATTAAGGATTTGAT+GGG | - | chr8_1:41628659-41628678 | None:intergenic | 30.0% | |
| ATACCAGATTAAGGATTTGA+TGG | - | chr8_1:41628660-41628679 | None:intergenic | 30.0% | |
| ATCATAAGAGCAAAGTAGAT+GGG | + | chr8_1:41628711-41628730 | Msa1194460:CDS | 30.0% | |
| !!! | GTGAAGGATTTAGTTTTCAA+TGG | - | chr8_1:41628871-41628890 | None:intergenic | 30.0% |
| CTTGCAAAACATTGTTTCAA+GGG | + | chr8_1:41629160-41629179 | Msa1194460:CDS | 30.0% | |
| ATTCCTGATTCAGTAACATT+TGG | + | chr8_1:41629368-41629387 | Msa1194460:CDS | 30.0% | |
| TTATAGTCATGATGTAGTTG+TGG | - | chr8_1:41629526-41629545 | None:intergenic | 30.0% | |
| CTACATCATGACTATAATTG+AGG | + | chr8_1:41629529-41629548 | Msa1194460:intron | 30.0% | |
| GACTATAATTGAGGTTGTAT+CGG | + | chr8_1:41629538-41629557 | Msa1194460:intron | 30.0% | |
| ! | CAGTTTACAGTAAAAGGTTT+TGG | + | chr8_1:41629634-41629653 | Msa1194460:intron | 30.0% |
| !! | GAAAGGTATTTGATTGAAGA+TGG | - | chr8_1:41629885-41629904 | None:intergenic | 30.0% |
| !! | CAGTTTTAGTACAAGAAGAA+AGG | - | chr8_1:41629902-41629921 | None:intergenic | 30.0% |
| ATGTGCAAAGTAGACATAAA+AGG | - | chr8_1:41630019-41630038 | None:intergenic | 30.0% | |
| AAATATCAAAACAATGGCGA+CGG | - | chr8_1:41630246-41630265 | None:intergenic | 30.0% | |
| !! | TGAATCACAAACATTTTGGT+TGG | + | chr8_1:41630448-41630467 | Msa1194460:intron | 30.0% |
| ! | GTTAATCTCCTCCTTTTAAT+AGG | + | chr8_1:41630572-41630591 | Msa1194460:intron | 30.0% |
| CATTTGACAGTACTTTATCA+AGG | + | chr8_1:41630639-41630658 | Msa1194460:intron | 30.0% | |
| TAAAACCATGACAACAATTG+TGG | - | chr8_1:41630672-41630691 | None:intergenic | 30.0% | |
| CTTGATATTGGGATAAAGTT+CGG | - | chr8_1:41630767-41630786 | None:intergenic | 30.0% | |
| TACGTATGTGACAATAATGA+AGG | - | chr8_1:41630820-41630839 | None:intergenic | 30.0% | |
| ATTGTTTGTAACACATGTAC+CGG | - | chr8_1:41630884-41630903 | None:intergenic | 30.0% | |
| ATTCTCTCATCATTTGTAGT+TGG | - | chr8_1:41631171-41631190 | None:intergenic | 30.0% | |
| AATTAGCCCAACATATTAGA+TGG | + | chr8_1:41631623-41631642 | Msa1194460:three_prime_UTR | 30.0% | |
| TAGCTTCCATCTAATATGTT+GGG | - | chr8_1:41631632-41631651 | None:intergenic | 30.0% | |
| TTAGCTTCCATCTAATATGT+TGG | - | chr8_1:41631633-41631652 | None:intergenic | 30.0% | |
| TTCATCCATTTCACTGTGTT+CGG | - | chr8_1:41627315-41627334 | None:intergenic | 35.0% | |
| ATCCATGAATATCCAGAACT+TGG | + | chr8_1:41627351-41627370 | Msa1194460:CDS | 35.0% | |
| !! | ATCCAAGTTCTGGATATTCA+TGG | - | chr8_1:41627356-41627375 | None:intergenic | 35.0% |
| ATATCCAGAACTTGGATATG+AGG | + | chr8_1:41627359-41627378 | Msa1194460:CDS | 35.0% | |
| TCATGACAAGTTCTGTCATA+AGG | + | chr8_1:41627385-41627404 | Msa1194460:CDS | 35.0% | |
| ACTGGAGTTGTAGCTAAAAT+CGG | + | chr8_1:41627456-41627475 | Msa1194460:CDS | 35.0% | |
| !! | TCAGCTCTAAGAGCAATAAA+AGG | - | chr8_1:41627495-41627514 | None:intergenic | 35.0% |
| ! | CTTTGAGTTTGTCGAAATCA+AGG | + | chr8_1:41627671-41627690 | Msa1194460:intron | 35.0% |
| !! | TTGAAGAGTTTCAAGTTGTG+GGG | + | chr8_1:41628020-41628039 | Msa1194460:intron | 35.0% |
| ATAAGCTCATTGATGAGTGA+AGG | + | chr8_1:41628498-41628517 | Msa1194460:intron | 35.0% | |
| TAAGCTCATTGATGAGTGAA+GGG | + | chr8_1:41628499-41628518 | Msa1194460:intron | 35.0% | |
| GTTGTACTTTCAACCGTAAA+TGG | - | chr8_1:41628545-41628564 | None:intergenic | 35.0% | |
| CTTGCTTAAGCTAAGTATAC+AGG | + | chr8_1:41628566-41628585 | Msa1194460:intron | 35.0% | |
| TACAGGTGGTTTAATCTTCT+AGG | + | chr8_1:41628583-41628602 | Msa1194460:intron | 35.0% | |
| GATTAAGGATTTGATGGGAA+CGG | - | chr8_1:41628654-41628673 | None:intergenic | 35.0% | |
| TTCCCATCAAATCCTTAATC+TGG | + | chr8_1:41628654-41628673 | Msa1194460:intron | 35.0% | |
| GATCATAAGAGCAAAGTAGA+TGG | + | chr8_1:41628710-41628729 | Msa1194460:CDS | 35.0% | |
| AAACTAAATCCTTCACATGC+AGG | + | chr8_1:41628875-41628894 | Msa1194460:intron | 35.0% | |
| ! | CATCTTCAAGCACATTTTCT+TGG | - | chr8_1:41628962-41628981 | None:intergenic | 35.0% |
| AAATGTGCTTGAAGATGTAG+TGG | + | chr8_1:41628965-41628984 | Msa1194460:intron | 35.0% | |
| !! | GAAGATGTAGTGGCTATTTT+TGG | + | chr8_1:41628975-41628994 | Msa1194460:intron | 35.0% |
| AGCTTCAAAGCAAAGATCAA+AGG | + | chr8_1:41629071-41629090 | Msa1194460:CDS | 35.0% | |
| GCTTCAAAGCAAAGATCAAA+GGG | + | chr8_1:41629072-41629091 | Msa1194460:CDS | 35.0% | |
| CTTCAAAGCAAAGATCAAAG+GGG | + | chr8_1:41629073-41629092 | Msa1194460:CDS | 35.0% | |
| TTCAAAGCAAAGATCAAAGG+GGG | + | chr8_1:41629074-41629093 | Msa1194460:CDS | 35.0% | |
| GCTTGCAAAACATTGTTTCA+AGG | + | chr8_1:41629159-41629178 | Msa1194460:CDS | 35.0% | |
| TTTAGTGTTTGACTCAACCT+GGG | - | chr8_1:41629204-41629223 | None:intergenic | 35.0% | |
| ! | TTTTAGTGTTTGACTCAACC+TGG | - | chr8_1:41629205-41629224 | None:intergenic | 35.0% |
| CATATGAAGCTAAATTCTGC+AGG | + | chr8_1:41629301-41629320 | Msa1194460:intron | 35.0% | |
| AAAAGAGCTTCAATGCACTA+AGG | + | chr8_1:41629414-41629433 | Msa1194460:CDS | 35.0% | |
| TTGTCATAGTCTGAAGATCA+AGG | + | chr8_1:41629488-41629507 | Msa1194460:intron | 35.0% | |
| ! | TAGTCTGAAGATCAAGGTTT+TGG | + | chr8_1:41629494-41629513 | Msa1194460:intron | 35.0% |
| AGAGTGCAGTTTACAGTAAA+AGG | + | chr8_1:41629628-41629647 | Msa1194460:intron | 35.0% | |
| CTATATCATTGAGACACCAT+TGG | - | chr8_1:41629669-41629688 | None:intergenic | 35.0% | |
| TAAGATCCTTTCAATCCTTG+CGG | - | chr8_1:41629984-41630003 | None:intergenic | 35.0% | |
| ATCATTGACAGTTAGTGCAT+TGG | - | chr8_1:41630066-41630085 | None:intergenic | 35.0% | |
| TCCAAAGAATCAACATCACA+AGG | + | chr8_1:41630131-41630150 | Msa1194460:intron | 35.0% | |
| !! | ACCTTGTGATGTTGATTCTT+TGG | - | chr8_1:41630135-41630154 | None:intergenic | 35.0% |
| !! | TGATGAAAAAGGCATTCTCA+AGG | - | chr8_1:41630360-41630379 | None:intergenic | 35.0% |
| GTGGAAGAGAATGATGAAAA+AGG | - | chr8_1:41630371-41630390 | None:intergenic | 35.0% | |
| GAGAATTCTTCAGTAGGTTT+GGG | - | chr8_1:41630518-41630537 | None:intergenic | 35.0% | |
| TGAGAATTCTTCAGTAGGTT+TGG | - | chr8_1:41630519-41630538 | None:intergenic | 35.0% | |
| ATCACTGAGAATTCTTCAGT+AGG | - | chr8_1:41630524-41630543 | None:intergenic | 35.0% | |
| GATGCAGTGTTCCTATTAAA+AGG | - | chr8_1:41630586-41630605 | None:intergenic | 35.0% | |
| CATAACCACAATTGTTGTCA+TGG | + | chr8_1:41630664-41630683 | Msa1194460:intron | 35.0% | |
| AGCAGTGACACTTCAAATTA+TGG | + | chr8_1:41630839-41630858 | Msa1194460:intron | 35.0% | |
| GCAGTGACACTTCAAATTAT+GGG | + | chr8_1:41630840-41630859 | Msa1194460:intron | 35.0% | |
| ACACACACAATCATCAAAGA+AGG | + | chr8_1:41631010-41631029 | Msa1194460:intron | 35.0% | |
| ACACAATCATCAAAGAAGGA+AGG | + | chr8_1:41631014-41631033 | Msa1194460:intron | 35.0% | |
| TCTCATCATTTGTAGTTGGA+GGG | - | chr8_1:41631167-41631186 | None:intergenic | 35.0% | |
| CAAGCATCAAGTATGATTGT+TGG | + | chr8_1:41631207-41631226 | Msa1194460:CDS | 35.0% | |
| !!! | TTTTACTTGGAAAAAGTGCC+CGG | + | chr8_1:41631282-41631301 | Msa1194460:CDS | 35.0% |
| TCTCATTGTGAATACCTAAG+AGG | - | chr8_1:41631317-41631336 | None:intergenic | 35.0% | |
| CTTAGGTATTCACAATGAGA+AGG | + | chr8_1:41631317-41631336 | Msa1194460:CDS | 35.0% | |
| AGGACTATGAGCTGAATATA+TGG | - | chr8_1:41631349-41631368 | None:intergenic | 35.0% | |
| ATGGAAGCTAATTATGCTTC+AGG | + | chr8_1:41631642-41631661 | Msa1194460:three_prime_UTR | 35.0% | |
| TCATCCATTTCACTGTGTTC+GGG | - | chr8_1:41627314-41627333 | None:intergenic | 40.0% | |
| AACTCCTCATATCCAAGTTC+TGG | - | chr8_1:41627366-41627385 | None:intergenic | 40.0% | |
| !! | AGTTAGGAGTATCTTACCAG+TGG | + | chr8_1:41627421-41627440 | Msa1194460:CDS | 40.0% |
| ! | GTTGTAGCTAAAATCGGTTC+TGG | + | chr8_1:41627462-41627481 | Msa1194460:CDS | 40.0% |
| !! | GCTCTAAGAGCAATAAAAGG+AGG | - | chr8_1:41627492-41627511 | None:intergenic | 40.0% |
| TATTGCTCTTAGAGCTGACA+TGG | + | chr8_1:41627497-41627516 | Msa1194460:CDS | 40.0% | |
| CATAAGTAGGGTAGTAGTGT+TGG | + | chr8_1:41627991-41628010 | Msa1194460:intron | 40.0% | |
| GAGAATGGAGAAAGAAACAG+TGG | + | chr8_1:41628126-41628145 | Msa1194460:intron | 40.0% | |
| AAGCTCATTGATGAGTGAAG+GGG | + | chr8_1:41628500-41628519 | Msa1194460:intron | 40.0% | |
| GCTTAAGCTAAGTATACAGG+TGG | + | chr8_1:41628569-41628588 | Msa1194460:intron | 40.0% | |
| ! | GCAGGAAGTATACCAGATTA+AGG | - | chr8_1:41628669-41628688 | None:intergenic | 40.0% |
| !! | CCAACAGGAACTTGTTGATT+GGG | + | chr8_1:41628688-41628707 | Msa1194460:intron | 40.0% |
| TCTTATATTCCAACCAGCTG+AGG | + | chr8_1:41628908-41628927 | Msa1194460:CDS | 40.0% | |
| ! | GCATTGTCTTGATCCTGTTT+TGG | + | chr8_1:41629115-41629134 | Msa1194460:CDS | 40.0% |
| GCAAAACATTGTTTCAAGGG+AGG | + | chr8_1:41629163-41629182 | Msa1194460:CDS | 40.0% | |
| AAACATTGTTTCAAGGGAGG+TGG | + | chr8_1:41629166-41629185 | Msa1194460:CDS | 40.0% | |
| CCTCCAAATGTTACTGAATC+AGG | - | chr8_1:41629374-41629393 | None:intergenic | 40.0% | |
| CCTGATTCAGTAACATTTGG+AGG | + | chr8_1:41629371-41629390 | Msa1194460:CDS | 40.0% | |
| ACTAAGGCAAAGGATAGAAG+AGG | + | chr8_1:41629430-41629449 | Msa1194460:CDS | 40.0% | |
| TTGATTGAAGATGGCAGTGT+TGG | - | chr8_1:41629876-41629895 | None:intergenic | 40.0% | |
| GTCGTCATTGTTCAGATCAT+GGG | - | chr8_1:41629929-41629948 | None:intergenic | 40.0% | |
| TGTCTCCTCGGATTTATATC+AGG | + | chr8_1:41630101-41630120 | Msa1194460:intron | 40.0% | |
| AACAGCCTGATATAAATCCG+AGG | - | chr8_1:41630109-41630128 | None:intergenic | 40.0% | |
| ! | ACATCACAAGGTGTTCTCAA+AGG | + | chr8_1:41630143-41630162 | Msa1194460:intron | 40.0% |
| GACATGAATCATTTGCCTCT+AGG | + | chr8_1:41630198-41630217 | Msa1194460:intron | 40.0% | |
| TACAGATTTCGATGGAACCT+TGG | + | chr8_1:41630265-41630284 | Msa1194460:intron | 40.0% | |
| ACAGATTTCGATGGAACCTT+GGG | + | chr8_1:41630266-41630285 | Msa1194460:intron | 40.0% | |
| CATTTCTCAACTTGAACGCA+AGG | + | chr8_1:41630311-41630330 | Msa1194460:intron | 40.0% | |
| TTCTTTAGCAGACAGAAGTG+TGG | - | chr8_1:41630390-41630409 | None:intergenic | 40.0% | |
| ! | TTCTTCAGTAGGTTTGGGAT+CGG | - | chr8_1:41630513-41630532 | None:intergenic | 40.0% |
| CTGAAGAATTCTCAGTGATG+TGG | + | chr8_1:41630525-41630544 | Msa1194460:intron | 40.0% | |
| GAGATTAACTGCTTGTGTCA+AGG | - | chr8_1:41630561-41630580 | None:intergenic | 40.0% | |
| GCAGTGTTCCTATTAAAAGG+AGG | - | chr8_1:41630583-41630602 | None:intergenic | 40.0% | |
| ACTGTCAAATGTGACCTATG+TGG | - | chr8_1:41630630-41630649 | None:intergenic | 40.0% | |
| CTTCAAATTATGGGCGTGTA+TGG | + | chr8_1:41630849-41630868 | Msa1194460:intron | 40.0% | |
| ! | AAGGGCAAGCAAAAGTACAT+AGG | + | chr8_1:41631097-41631116 | Msa1194460:CDS | 40.0% |
| TTTGTAGTTGGAGGGATTGT+TGG | - | chr8_1:41631159-41631178 | None:intergenic | 40.0% | |
| CTCTCATCATTTGTAGTTGG+AGG | - | chr8_1:41631168-41631187 | None:intergenic | 40.0% | |
| GATGAGAGAATACACCAACT+TGG | + | chr8_1:41631180-41631199 | Msa1194460:CDS | 40.0% | |
| TTGATGCTTGTCTTCCAAGT+TGG | - | chr8_1:41631197-41631216 | None:intergenic | 40.0% | |
| AAAATCTTCACTCGCTGTGT+AGG | - | chr8_1:41631259-41631278 | None:intergenic | 40.0% | |
| ACCTAAGAGGAAAAATGAGC+CGG | - | chr8_1:41631304-41631323 | None:intergenic | 40.0% | |
| GGTATTCACAATGAGAAGGT+TGG | + | chr8_1:41631321-41631340 | Msa1194460:CDS | 40.0% | |
| GATGAAGATGTTCTTCCCAT+TGG | + | chr8_1:41631381-41631400 | Msa1194460:CDS | 40.0% | |
| AGAGCAAATGCTGCATGTAT+CGG | - | chr8_1:41631411-41631430 | None:intergenic | 40.0% | |
| ACAACCCGAACACAGTGAAA+TGG | + | chr8_1:41627307-41627326 | Msa1194460:CDS | 45.0% | |
| !! | CAGTTTTAGCAACATGCCAC+TGG | - | chr8_1:41627440-41627459 | None:intergenic | 45.0% |
| CAGTGGCATGTTGCTAAAAC+TGG | + | chr8_1:41627438-41627457 | Msa1194460:CDS | 45.0% | |
| ! | TTGTCGAAATCAAGGCACCA+TGG | + | chr8_1:41627679-41627698 | Msa1194460:intron | 45.0% |
| ACAATTACGCTGAAACCGTG+CGG | - | chr8_1:41628376-41628395 | None:intergenic | 45.0% | |
| GGTTTCAGCGTAATTGTGAC+TGG | + | chr8_1:41628379-41628398 | Msa1194460:intron | 45.0% | |
| AGCTCATTGATGAGTGAAGG+GGG | + | chr8_1:41628501-41628520 | Msa1194460:intron | 45.0% | |
| ATCAACAAGTTCCTGTTGGC+AGG | - | chr8_1:41628687-41628706 | None:intergenic | 45.0% | |
| !! | GCCAACAGGAACTTGTTGAT+TGG | + | chr8_1:41628687-41628706 | Msa1194460:intron | 45.0% |
| CCCAATCAACAAGTTCCTGT+TGG | - | chr8_1:41628691-41628710 | None:intergenic | 45.0% | |
| !! | ACCAAGAAGCATCGCAACAT+GGG | - | chr8_1:41628762-41628781 | None:intergenic | 45.0% |
| CAATAGTAGCCTGCATGTGA+AGG | - | chr8_1:41628887-41628906 | None:intergenic | 45.0% | |
| TTCCAACCAGCTGAGGAAAA+AGG | + | chr8_1:41628915-41628934 | Msa1194460:CDS | 45.0% | |
| TTAGCGACACAGTATCCCTT+AGG | + | chr8_1:41629005-41629024 | Msa1194460:intron | 45.0% | |
| CATCCTGCTAAAAAATCCCC+CGG | - | chr8_1:41629047-41629066 | None:intergenic | 45.0% | |
| !!! | GGGGATTTTTTAGCAGGATG+TGG | + | chr8_1:41629047-41629066 | Msa1194460:CDS | 45.0% |
| !!! | TGTTTTGGCCGCTTCAATGT+CGG | + | chr8_1:41629130-41629149 | Msa1194460:CDS | 45.0% |
| GCTAATCACCGACATTGAAG+CGG | - | chr8_1:41629141-41629160 | None:intergenic | 45.0% | |
| GACTCAACCTGGGAATCTAA+AGG | - | chr8_1:41629194-41629213 | None:intergenic | 45.0% | |
| AATTCTGCAGGTCCTTTCTG+TGG | + | chr8_1:41629313-41629332 | Msa1194460:intron | 45.0% | |
| GTTCATGAGAAGACTCTGAG+TGG | - | chr8_1:41629346-41629365 | None:intergenic | 45.0% | |
| GCTTCAATGCACTAAGGCAA+AGG | + | chr8_1:41629420-41629439 | Msa1194460:CDS | 45.0% | |
| !!! | GTTTTGGAGACCTCTACCAA+TGG | + | chr8_1:41629650-41629669 | Msa1194460:intron | 45.0% |
| CATTGAGACACCATTGGTAG+AGG | - | chr8_1:41629663-41629682 | None:intergenic | 45.0% | |
| CGTCGTCATTGTTCAGATCA+TGG | - | chr8_1:41629930-41629949 | None:intergenic | 45.0% | |
| TGATCTGAACAATGACGACG+CGG | + | chr8_1:41629930-41629949 | Msa1194460:intron | 45.0% | |
| ! | TTTCTAGTGCTCTGTCTCCT+CGG | + | chr8_1:41630089-41630108 | Msa1194460:intron | 45.0% |
| ATGTCTAGCATCTGCTACTC+AGG | - | chr8_1:41630183-41630202 | None:intergenic | 45.0% | |
| TGGAACCTTGGGTCTATTGA+AGG | + | chr8_1:41630277-41630296 | Msa1194460:intron | 45.0% | |
| AACCTTGGGTCTATTGAAGG+TGG | + | chr8_1:41630280-41630299 | Msa1194460:intron | 45.0% | |
| TTCCACCTTCAATAGACCCA+AGG | - | chr8_1:41630285-41630304 | None:intergenic | 45.0% | |
| ! | GGTTTGGGATCGGATAAACT+GGG | - | chr8_1:41630503-41630522 | None:intergenic | 45.0% |
| ! | AGGTTTGGGATCGGATAAAC+TGG | - | chr8_1:41630504-41630523 | None:intergenic | 45.0% |
| TGTGTCTGCAATTGCAGTTG+TGG | - | chr8_1:41630730-41630749 | None:intergenic | 45.0% | |
| ! | TGTAACACATGTACCGGTGT+TGG | - | chr8_1:41630878-41630897 | None:intergenic | 45.0% |
| ACTGCAGAGGTTGAGTTCTT+TGG | + | chr8_1:41631123-41631142 | Msa1194460:CDS | 45.0% | |
| CCTAAGAGGAAAAATGAGCC+GGG | - | chr8_1:41631303-41631322 | None:intergenic | 45.0% | |
| !!! | ATTATTTAAATAAGTTTTAT+AGG | + | chr8_1:41628838-41628857 | Msa1194460:intron | 5.0% |
| AGGCGTGAGCTTGACAAGTT+AGG | + | chr8_1:41627405-41627424 | Msa1194460:CDS | 50.0% | |
| CATGGATGCTTTGCCAATCC+AGG | + | chr8_1:41627515-41627534 | Msa1194460:CDS | 50.0% | |
| TGAGGATGCAAATGCGGTTG+CGG | - | chr8_1:41628302-41628321 | None:intergenic | 50.0% | |
| CAATTACGCTGAAACCGTGC+GGG | - | chr8_1:41628375-41628394 | None:intergenic | 50.0% | |
| CTGGTATACTTCCTGCCAAC+AGG | + | chr8_1:41628673-41628692 | Msa1194460:intron | 50.0% | |
| !! | CACCAAGAAGCATCGCAACA+TGG | - | chr8_1:41628763-41628782 | None:intergenic | 50.0% |
| ! | TGCCTTTTTCCTCAGCTGGT+TGG | - | chr8_1:41628920-41628939 | None:intergenic | 50.0% |
| ! | CCTATGCCTTTTTCCTCAGC+TGG | - | chr8_1:41628924-41628943 | None:intergenic | 50.0% |
| ! | CCAGCTGAGGAAAAAGGCAT+AGG | + | chr8_1:41628921-41628940 | Msa1194460:CDS | 50.0% |
| CGTGATGCAACAACGCCTAA+GGG | - | chr8_1:41629023-41629042 | None:intergenic | 50.0% | |
| ! | CCTTAGGCGTTGTTGCATCA+CGG | + | chr8_1:41629021-41629040 | Msa1194460:CDS | 50.0% |
| GACATTGAAGCGGCCAAAAC+AGG | - | chr8_1:41629131-41629150 | None:intergenic | 50.0% | |
| GGTGGATCCTTTAGATTCCC+AGG | + | chr8_1:41629184-41629203 | Msa1194460:CDS | 50.0% | |
| AGTGGACCATTGCCACAGAA+AGG | - | chr8_1:41629328-41629347 | None:intergenic | 50.0% | |
| TCCTTTCAATCCTTGCGGCA+AGG | - | chr8_1:41629979-41629998 | None:intergenic | 50.0% | |
| CAATTGTGCTGTGGCCACAT+AGG | + | chr8_1:41630613-41630632 | Msa1194460:intron | 50.0% | |
| GTCTGCAATTGCAGTTGTGG+AGG | - | chr8_1:41630727-41630746 | None:intergenic | 50.0% | |
| AGTACATAGGTGCACTGCAG+AGG | + | chr8_1:41631110-41631129 | Msa1194460:CDS | 50.0% | |
| TCTTCACTCGCTGTGTAGGT+TGG | - | chr8_1:41631255-41631274 | None:intergenic | 50.0% | |
| !! | CCCGGCTCATTTTTCCTCTT+AGG | + | chr8_1:41631300-41631319 | Msa1194460:CDS | 50.0% |
| ! | GCATGTATCGGAGCACCAAT+GGG | - | chr8_1:41631399-41631418 | None:intergenic | 50.0% |
| ! | TGCATGTATCGGAGCACCAA+TGG | - | chr8_1:41631400-41631419 | None:intergenic | 50.0% |
| ! | AACTGCGCATTTTGCCCGCA+CGG | + | chr8_1:41628358-41628377 | Msa1194460:intron | 55.0% |
| GCCCATGTTGCGATGCTTCT+TGG | + | chr8_1:41628758-41628777 | Msa1194460:CDS | 55.0% | |
| CCGTGATGCAACAACGCCTA+AGG | - | chr8_1:41629024-41629043 | None:intergenic | 55.0% | |
| GCAGGTCCTTTCTGTGGCAA+TGG | + | chr8_1:41629319-41629338 | Msa1194460:intron | 55.0% | |
| GCCTTGCCGCAAGGATTGAA+AGG | + | chr8_1:41629975-41629994 | Msa1194460:intron | 55.0% | |
| TCGCGACTGCAATTGTGCTG+TGG | + | chr8_1:41630604-41630623 | Msa1194460:intron | 55.0% | |
| ! | AGGCGTTGTTGCATCACGGC+CGG | + | chr8_1:41629025-41629044 | Msa1194460:CDS | 60.0% |
| !!! | CGGCCGGGGGATTTTTTAGC+AGG | + | chr8_1:41629041-41629060 | Msa1194460:CDS | 60.0% |
| TGCGGCAAGGCTCGTACAAG+AGG | - | chr8_1:41629966-41629985 | None:intergenic | 60.0% | |
| CTTGTACGAGCCTTGCCGCA+AGG | + | chr8_1:41629966-41629985 | Msa1194460:intron | 60.0% | |
| GGAAGGTGAGCATGGCCTAG+AGG | - | chr8_1:41630216-41630235 | None:intergenic | 60.0% | |
| AGGCCATGCTCACCTTCCTC+TGG | + | chr8_1:41630218-41630237 | Msa1194460:intron | 60.0% | |
| GCGTGTATGGCGTCCAACAC+CGG | + | chr8_1:41630862-41630881 | Msa1194460:intron | 60.0% | |
| GGCGTTGTTGCATCACGGCC+GGG | + | chr8_1:41629026-41629045 | Msa1194460:CDS | 65.0% | |
| GCGTTGTTGCATCACGGCCG+GGG | + | chr8_1:41629027-41629046 | Msa1194460:CDS | 65.0% | |
| CGTTGTTGCATCACGGCCGG+GGG | + | chr8_1:41629028-41629047 | Msa1194460:CDS | 65.0% | |
| GCGCCAGAGGAAGGTGAGCA+TGG | - | chr8_1:41630224-41630243 | None:intergenic | 65.0% | |
| AACAATGGCGACGGCGCCAG+AGG | - | chr8_1:41630237-41630256 | None:intergenic | 65.0% | |
| ATGGCGACGGCGCCAGAGGA+AGG | - | chr8_1:41630233-41630252 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 41627167 | 41631671 | 41627167 | ID=Msa1194460;Name=Msa1194460 |
| chr8_1 | mRNA | 41627167 | 41631671 | 41627167 | ID=Msa1194460-mRNA-1;Parent=Msa1194460;Name=Msa1194460-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.66|0.42|1|0.5|0.42|7|204|400 |
| chr8_1 | exon | 41627167 | 41627226 | 41627167 | ID=Msa1194460-mRNA-1:exon:13461;Parent=Msa1194460-mRNA-1 |
| chr8_1 | exon | 41627300 | 41627536 | 41627300 | ID=Msa1194460-mRNA-1:exon:13462;Parent=Msa1194460-mRNA-1 |
| chr8_1 | exon | 41628695 | 41628820 | 41628695 | ID=Msa1194460-mRNA-1:exon:13463;Parent=Msa1194460-mRNA-1 |
| chr8_1 | exon | 41628897 | 41628980 | 41628897 | ID=Msa1194460-mRNA-1:exon:13464;Parent=Msa1194460-mRNA-1 |
| chr8_1 | exon | 41629017 | 41629205 | 41629017 | ID=Msa1194460-mRNA-1:exon:13465;Parent=Msa1194460-mRNA-1 |
| chr8_1 | exon | 41629323 | 41629451 | 41629323 | ID=Msa1194460-mRNA-1:exon:13466;Parent=Msa1194460-mRNA-1 |
| chr8_1 | exon | 41631090 | 41631671 | 41631090 | ID=Msa1194460-mRNA-1:exon:13467;Parent=Msa1194460-mRNA-1 |
| chr8_1 | CDS | 41627167 | 41627226 | 41627167 | ID=Msa1194460-mRNA-1:cds;Parent=Msa1194460-mRNA-1 |
| chr8_1 | CDS | 41627300 | 41627536 | 41627300 | ID=Msa1194460-mRNA-1:cds;Parent=Msa1194460-mRNA-1 |
| chr8_1 | CDS | 41628695 | 41628820 | 41628695 | ID=Msa1194460-mRNA-1:cds;Parent=Msa1194460-mRNA-1 |
| chr8_1 | CDS | 41628897 | 41628980 | 41628897 | ID=Msa1194460-mRNA-1:cds;Parent=Msa1194460-mRNA-1 |
| chr8_1 | CDS | 41629017 | 41629205 | 41629017 | ID=Msa1194460-mRNA-1:cds;Parent=Msa1194460-mRNA-1 |
| chr8_1 | CDS | 41629323 | 41629451 | 41629323 | ID=Msa1194460-mRNA-1:cds;Parent=Msa1194460-mRNA-1 |
| chr8_1 | CDS | 41631090 | 41631467 | 41631090 | ID=Msa1194460-mRNA-1:cds;Parent=Msa1194460-mRNA-1 |
| chr8_1 | three_prime_UTR | 41631468 | 41631671 | 41631468 | ID=Msa1194460-mRNA-1:three_prime_utr;Parent=Msa1194460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
