Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397890 | XP_003628629.1 | 89.862 | 434 | 15 | 3 | 1 | 407 | 2 | 433 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397890 | sp|Q84XG9|ILL1_ORYSI | 50.130 | 385 | 164 | 3 | 42 | 398 | 40 | 424 | 3.68e-131 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397890 | G7LER0 | 89.862 | 434 | 15 | 3 | 1 | 407 | 2 | 433 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1387130 | Msa1397890 | 0.998693 | 3.278308e-273 | -8.615850e-47 |
| Msa0797350 | Msa1397890 | 0.811974 | 5.352147e-51 | -8.615850e-47 |
| Msa1227600 | Msa1397890 | 0.900828 | 4.957476e-78 | -8.615850e-47 |
| Msa1290110 | Msa1397890 | 0.867382 | 1.426025e-65 | -8.615850e-47 |
| Msa1194460 | Msa1397890 | 0.802337 | 5.886045e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397890 | MtrunA17_Chr8g0364301 | 89.862 | 434 | 15 | 3 | 1 | 407 | 2 | 433 | 0.0 | 795 |
| Msa1397890 | MtrunA17_Chr8g0371561 | 76.869 | 428 | 67 | 4 | 1 | 396 | 2 | 429 | 0.0 | 665 |
| Msa1397890 | MtrunA17_Chr3g0124881 | 49.246 | 398 | 175 | 2 | 28 | 398 | 74 | 471 | 3.03e-137 | 401 |
| Msa1397890 | MtrunA17_Chr2g0330661 | 51.000 | 400 | 168 | 3 | 27 | 398 | 29 | 428 | 3.26e-135 | 394 |
| Msa1397890 | MtrunA17_Chr2g0330721 | 50.649 | 385 | 163 | 2 | 41 | 398 | 49 | 433 | 1.02e-132 | 388 |
| Msa1397890 | MtrunA17_Chr2g0330671 | 46.919 | 422 | 194 | 3 | 7 | 398 | 11 | 432 | 3.44e-132 | 387 |
| Msa1397890 | MtrunA17_Chr2g0328461 | 49.870 | 385 | 166 | 2 | 41 | 398 | 48 | 432 | 5.54e-128 | 376 |
| Msa1397890 | MtrunA17_Chr8g0341471 | 50.129 | 389 | 164 | 5 | 29 | 387 | 28 | 416 | 7.62e-126 | 370 |
| Msa1397890 | MtrunA17_Chr3g0128101 | 43.262 | 423 | 204 | 3 | 9 | 404 | 7 | 420 | 4.50e-119 | 352 |
| Msa1397890 | MtrunA17_Chr8g0364461 | 52.288 | 306 | 91 | 8 | 119 | 396 | 96 | 374 | 1.35e-93 | 287 |
| Msa1397890 | MtrunA17_Chr2g0328471 | 55.556 | 162 | 69 | 2 | 1 | 161 | 1 | 160 | 4.01e-56 | 182 |
| Msa1397890 | MtrunA17_Chr2g0330711 | 57.143 | 161 | 66 | 2 | 1 | 160 | 1 | 159 | 9.05e-56 | 181 |
| Msa1397890 | MtrunA17_Chr2g0328481 | 35.922 | 309 | 126 | 3 | 162 | 398 | 4 | 312 | 1.86e-55 | 186 |
| Msa1397890 | MtrunA17_Chr3g0128121 | 63.415 | 41 | 15 | 0 | 134 | 174 | 1 | 41 | 6.62e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397890 | AT1G51760.1 | 48.120 | 399 | 178 | 3 | 29 | 398 | 24 | 422 | 3.39e-129 | 379 |
| Msa1397890 | AT5G54140.1 | 45.238 | 420 | 191 | 4 | 9 | 398 | 6 | 416 | 6.15e-125 | 368 |
| Msa1397890 | AT5G56660.1 | 47.739 | 398 | 176 | 5 | 30 | 398 | 28 | 422 | 1.43e-123 | 365 |
| Msa1397890 | AT1G51780.1 | 44.235 | 425 | 207 | 4 | 1 | 398 | 1 | 422 | 7.41e-122 | 360 |
| Msa1397890 | AT1G44350.1 | 46.354 | 384 | 182 | 3 | 26 | 385 | 62 | 445 | 9.31e-122 | 361 |
| Msa1397890 | AT5G56650.1 | 48.831 | 385 | 167 | 4 | 41 | 398 | 40 | 421 | 3.42e-121 | 359 |
| Msa1397890 | AT3G02875.1 | 44.246 | 391 | 188 | 3 | 42 | 402 | 43 | 433 | 1.38e-116 | 347 |
| Msa1397890 | AT5G56650.2 | 52.399 | 271 | 100 | 3 | 41 | 284 | 40 | 308 | 3.20e-89 | 273 |
| Msa1397890 | AT3G02875.2 | 46.468 | 269 | 117 | 2 | 42 | 283 | 43 | 311 | 4.36e-79 | 247 |
| Msa1397890 | AT3G02875.3 | 50.213 | 235 | 109 | 3 | 42 | 268 | 43 | 277 | 7.24e-72 | 228 |
Find 83 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGATGCTTTGCCAATTC+AGG | 0.247866 | tig0022216:-29933 | Msa1397890:intron |
| TTCATCCATTTCACTGTGTT+GGG | 0.250801 | tig0022216:+30136 | None:intergenic |
| GCCCATGTTGCGATGCTTCT+TGG | 0.288317 | tig0022216:-28690 | Msa1397890:CDS |
| CAATGGCCTGTTGCTAAAAC+TGG | 0.311143 | tig0022216:-30010 | Msa1397890:CDS |
| CCTCCAAATGTTACTGAATC+AGG | 0.311713 | tig0022216:+28077 | None:intergenic |
| CTTCATCCATTTCACTGTGT+TGG | 0.318859 | tig0022216:+30135 | None:intergenic |
| TTCCAACCAGCTGAGGAAAA+AGG | 0.321874 | tig0022216:-28533 | Msa1397890:CDS |
| AGAAATGAAAGATAAATTAA+AGG | 0.322052 | tig0022216:-28649 | Msa1397890:intron |
| GTTGTTGCTAAGATTGGTTC+TGG | 0.322981 | tig0022216:-29986 | Msa1397890:CDS |
| CTAATTATGCTTCAGGAGTT+CGG | 0.339989 | tig0022216:-25806 | Msa1397890:three_prime_UTR |
| ATGGAAGCTAATTATGCTTC+AGG | 0.340847 | tig0022216:-25813 | Msa1397890:three_prime_UTR |
| ACTGCAGAGGTTGAGTTCTT+TGG | 0.343440 | tig0022216:-26332 | Msa1397890:CDS |
| ATTCCTGATTCAGTAACATT+TGG | 0.347097 | tig0022216:-28080 | Msa1397890:CDS |
| AATTCCTCATATCCAAGTTC+TGG | 0.350678 | tig0022216:+30085 | None:intergenic |
| ACTGGAGTTGTTGCTAAGAT+TGG | 0.366699 | tig0022216:-29992 | Msa1397890:CDS |
| AGGACTATGAGCTGAATATA+TGG | 0.368562 | tig0022216:+26109 | None:intergenic |
| TAATTATGCTTCAGGAGTTC+GGG | 0.378638 | tig0022216:-25805 | None:intergenic |
| CAAGTCTTAGATGATTGTTT+AGG | 0.382508 | tig0022216:+30269 | None:intergenic |
| TCAGCTCTAAGAGCAATAAA+AGG | 0.385249 | tig0022216:+29956 | None:intergenic |
| AATTAGCCCAACATATTAGA+TGG | 0.387344 | tig0022216:-25832 | Msa1397890:three_prime_UTR |
| ATCCAAGTTCTGGATATTCA+TGG | 0.393550 | tig0022216:+30095 | None:intergenic |
| GCCAACAGGAACTTGTTGAT+TGG | 0.403152 | tig0022216:-28761 | Msa1397890:intron |
| CTCTCATCATTTGTAGTTGG+AGG | 0.409256 | tig0022216:+26290 | None:intergenic |
| GATCATAAGAGCAAAGTAGA+TGG | 0.419049 | tig0022216:-28738 | Msa1397890:CDS |
| ATTCTCTCATCATTTGTAGT+TGG | 0.422375 | tig0022216:+26287 | None:intergenic |
| CCAACAGGAACTTGTTGATT+GGG | 0.431956 | tig0022216:-28760 | Msa1397890:intron |
| GGCGTTGTTGCATCACGGCC+GGG | 0.434174 | tig0022216:-28422 | Msa1397890:CDS |
| GCAGGTCCTTTCTGTGGCAA+TGG | 0.442153 | tig0022216:-28129 | Msa1397890:intron |
| TTTGTAGTTGGAGGGATTGT+TGG | 0.442878 | tig0022216:+26299 | None:intergenic |
| CCTGATTCAGTAACATTTGG+AGG | 0.445538 | tig0022216:-28077 | Msa1397890:CDS |
| AGGCGTGAGCTTGACAAGTT+AGG | 0.445889 | tig0022216:-30043 | Msa1397890:CDS |
| AGGCGTTGTTGCATCACGGC+CGG | 0.446779 | tig0022216:-28423 | Msa1397890:CDS |
| TAGCTTCCATCTAATATGTT+GGG | 0.447610 | tig0022216:+25826 | None:intergenic |
| CAAGCATCAAGTATGATTGT+TGG | 0.450241 | tig0022216:-26248 | Msa1397890:CDS |
| CCGTGATGCAACAACGCCTA+AGG | 0.452190 | tig0022216:+28427 | None:intergenic |
| AGAACCCCAACACAGTGAAA+TGG | 0.460531 | tig0022216:-30141 | Msa1397890:CDS |
| ATCCATGAATATCCAGAACT+TGG | 0.462489 | tig0022216:-30097 | Msa1397890:CDS |
| TTAGCTTCCATCTAATATGT+TGG | 0.474036 | tig0022216:+25825 | None:intergenic |
| CAGAAGAGAAATTATAATAG+AGG | 0.475175 | tig0022216:-25953 | Msa1397890:three_prime_UTR |
| GCGTTGTTGCATCACGGCCG+GGG | 0.478016 | tig0022216:-28421 | Msa1397890:CDS |
| GGTATTCACAATGAGAAGGT+TGG | 0.489119 | tig0022216:-26134 | Msa1397890:CDS |
| GCTTCAAAGCAAAGATCAAA+GGG | 0.489839 | tig0022216:-28376 | Msa1397890:CDS |
| ATATCCAGAACTTGGATATG+AGG | 0.491903 | tig0022216:-30089 | Msa1397890:CDS |
| TCATGACAAGTTCTGTGATA+AGG | 0.498650 | tig0022216:-30063 | Msa1397890:CDS |
| CACCAAGAAGCATCGCAACA+TGG | 0.504864 | tig0022216:+28688 | None:intergenic |
| TCTCATTGTGAATACCTAAG+AGG | 0.507391 | tig0022216:+26141 | None:intergenic |
| ACCTAAGAGGAAAAGTGAGC+CGG | 0.511002 | tig0022216:+26154 | None:intergenic |
| TTGATGCTTGTCTTCCAAGT+TGG | 0.517245 | tig0022216:+26261 | None:intergenic |
| GCATGTATCGCAGCACCAAT+GGG | 0.522841 | tig0022216:+26059 | None:intergenic |
| TCTCATCATTTGTAGTTGGA+GGG | 0.526258 | tig0022216:+26291 | None:intergenic |
| TCATCCATTTCACTGTGTTG+GGG | 0.526334 | tig0022216:+30137 | None:intergenic |
| AATAGTAGTTTGTAATAGCA+AGG | 0.528710 | tig0022216:+25912 | None:intergenic |
| AGTTAGGTGTATCTTATCAA+TGG | 0.532989 | tig0022216:-30027 | Msa1397890:CDS |
| AGCTTCAAAGCAAAGATCAA+AGG | 0.536414 | tig0022216:-28377 | Msa1397890:CDS |
| GATGAAGATGTTCTTCCCAT+TGG | 0.537284 | tig0022216:-26074 | Msa1397890:CDS |
| TATTGCTCTTAGAGCTGACA+TGG | 0.551848 | tig0022216:-29951 | Msa1397890:CDS |
| AAAATCTTCACTCGCTGTGT+AGG | 0.554083 | tig0022216:+26199 | None:intergenic |
| TGCATGTATCGCAGCACCAA+TGG | 0.554871 | tig0022216:+26058 | None:intergenic |
| ATCATAAGAGCAAAGTAGAT+GGG | 0.556957 | tig0022216:-28737 | Msa1397890:CDS |
| CCTAAGAGGAAAAGTGAGCC+GGG | 0.557980 | tig0022216:+26155 | None:intergenic |
| TCTTCACTCGCTGTGTAGGT+TGG | 0.559495 | tig0022216:+26203 | None:intergenic |
| CCTTAGGCGTTGTTGCATCA+CGG | 0.566026 | tig0022216:-28427 | Msa1397890:CDS |
| GATGAGAGAATACACCAACT+TGG | 0.573593 | tig0022216:-26275 | Msa1397890:CDS |
| CTTAGGTATTCACAATGAGA+AGG | 0.574770 | tig0022216:-26138 | Msa1397890:CDS |
| GCTTCAATGCACTAAGGCAA+AGG | 0.584166 | tig0022216:-28028 | Msa1397890:CDS |
| AATTCTGCAGGTCCTTTCTG+TGG | 0.585555 | tig0022216:-28135 | Msa1397890:intron |
| AGTGGACCATTGCCACAGAA+AGG | 0.591959 | tig0022216:+28123 | None:intergenic |
| TCTTATATTCCAACCAGCTG+AGG | 0.592807 | tig0022216:-28540 | Msa1397890:CDS |
| GTACTATTAAATATCTCAGA+AGG | 0.601606 | tig0022216:-25872 | Msa1397890:three_prime_UTR |
| CGTGATGCAACAACGCCTAA+GGG | 0.604454 | tig0022216:+28428 | None:intergenic |
| TTAGCGACACAGTATCCCTT+AGG | 0.606827 | tig0022216:-28443 | Msa1397890:CDS |
| CGTTGTTGCATCACGGCCGG+GGG | 0.609021 | tig0022216:-28420 | Msa1397890:CDS |
| AAGGGCAAGCAAAAGTACAT+AGG | 0.610471 | tig0022216:-26358 | Msa1397890:CDS |
| ACCAAGAAGCATCGCAACAT+GGG | 0.617744 | tig0022216:+28689 | None:intergenic |
| GCTCTAAGAGCAATAAAAGG+AGG | 0.618553 | tig0022216:+29959 | None:intergenic |
| TGAGATATTTAATAGTACAA+TGG | 0.618607 | tig0022216:+25877 | None:intergenic |
| AGTACATAGGTGCACTGCAG+AGG | 0.622649 | tig0022216:-26345 | Msa1397890:CDS |
| AAATGTGCTTGAAGATGTAG+TGG | 0.633529 | tig0022216:-28483 | Msa1397890:CDS |
| TTCAAAGCAAAGATCAAAGG+GGG | 0.633646 | tig0022216:-28374 | Msa1397890:CDS |
| ACTAAGGCAAAGGATAGAAG+AGG | 0.641015 | tig0022216:-28018 | Msa1397890:intron |
| TCTTCATCAATAAAATAGTG+AGG | 0.665866 | tig0022216:+26089 | None:intergenic |
| GTTCATGAGAAGACTCTGAG+TGG | 0.725565 | tig0022216:+28105 | None:intergenic |
| CTTCAAAGCAAAGATCAAAG+GGG | 0.730699 | tig0022216:-28375 | Msa1397890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAACAGTAAAATTA+AGG | - | tig0022216:26696-26715 | Msa1397890:intron | 10.0% |
| !!! | ATGTCAATTATTTTTTATTA+AGG | - | tig0022216:26791-26810 | Msa1397890:intron | 10.0% |
| !! | TTACTATTTATTACTCATAT+AGG | - | tig0022216:26536-26555 | Msa1397890:intron | 15.0% |
| !!! | TTATTTTTTATTAAGGAAAG+TGG | - | tig0022216:26798-26817 | Msa1397890:intron | 15.0% |
| !! | TAGTTTAATATTACCATTTA+CGG | - | tig0022216:27161-27180 | Msa1397890:intron | 15.0% |
| !! | AGAAATGAAAGATAAATTAA+AGG | - | tig0022216:27431-27450 | Msa1397890:intron | 15.0% |
| !!! | ACAATTTTTCAAATTGTTAT+TGG | - | tig0022216:29531-29550 | Msa1397890:intron | 15.0% |
| !!! | TTTATTTTTGTTACCTGAAT+TGG | + | tig0022216:26163-26182 | None:intergenic | 20.0% |
| !!! | TATAATTTTTGCAAAAATCG+CGG | - | tig0022216:26356-26375 | Msa1397890:CDS | 20.0% |
| !! | TGATCTTTGTAAAAAATTTG+AGG | - | tig0022216:26483-26502 | Msa1397890:intron | 20.0% |
| !! | AGGTACAATATTAATAGAAA+AGG | + | tig0022216:26852-26871 | None:intergenic | 20.0% |
| !! | AAAAACAAATCAGATGTTAT+AGG | + | tig0022216:27070-27089 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTATATTGCAAGT+TGG | - | tig0022216:27081-27100 | Msa1397890:intron | 20.0% |
| !! | AAGATAAATTAAAGGTAAAG+TGG | - | tig0022216:27439-27458 | Msa1397890:intron | 20.0% |
| !! | TTGATATTGTTGAAAATTAC+AGG | + | tig0022216:28206-28225 | None:intergenic | 20.0% |
| !!! | TGTAATTTTCAACAATATCA+AGG | - | tig0022216:28205-28224 | Msa1397890:intron | 20.0% |
| !! | ATCTGTAAATATCAAAACAA+TGG | + | tig0022216:28884-28903 | None:intergenic | 20.0% |
| !!! | AGTCTATAATTTATAGGTTT+TGG | - | tig0022216:29330-29349 | Msa1397890:intron | 20.0% |
| !! | TGAGATATTTAATAGTACAA+TGG | + | tig0022216:30206-30225 | None:intergenic | 20.0% |
| ! | ATTTGAGGAAAAAAATGAGA+AGG | - | tig0022216:26498-26517 | Msa1397890:intron | 25.0% |
| ! | GTATGAGAAAAAATGAAAAG+TGG | - | tig0022216:26571-26590 | Msa1397890:intron | 25.0% |
| ! | TTCTATTAATATTGTACCTG+AGG | - | tig0022216:26853-26872 | Msa1397890:intron | 25.0% |
| !! | TCTTTTGTAATACCAATTCA+TGG | - | tig0022216:26894-26913 | Msa1397890:intron | 25.0% |
| !!! | TTAATCTTCTAGGACTAATT+TGG | - | tig0022216:27225-27244 | Msa1397890:intron | 25.0% |
| ! | ATATTTCTTGGAAGCAATTA+CGG | + | tig0022216:27251-27270 | None:intergenic | 25.0% |
| ! | ACTTATTGTGCTATATTTCT+TGG | + | tig0022216:27263-27282 | None:intergenic | 25.0% |
| ! | AATTAAAGGTAAAGTGGAAT+TGG | - | tig0022216:27445-27464 | Msa1397890:intron | 25.0% |
| ! | AGAAATAATGTGTGAAAACT+TGG | + | tig0022216:27870-27889 | None:intergenic | 25.0% |
| ! | TGAAAATTACAGGAAAAACA+CGG | + | tig0022216:28196-28215 | None:intergenic | 25.0% |
| ! | TTGATATTTACAGATTTCGA+TGG | - | tig0022216:28889-28908 | Msa1397890:intron | 25.0% |
| !! | TAACTGAATCACAAACATTT+TGG | - | tig0022216:29076-29095 | Msa1397890:intron | 25.0% |
| ! | AAGTGCAGTCTATAATTTAT+AGG | - | tig0022216:29324-29343 | Msa1397890:intron | 25.0% |
| !!! | CTATAATTTATAGGTTTTGG+AGG | - | tig0022216:29333-29352 | Msa1397890:intron | 25.0% |
| ! | ATGTTGTGATTCTTGATATT+GGG | + | tig0022216:29410-29429 | None:intergenic | 25.0% |
| ! | TATGTTGTGATTCTTGATAT+TGG | + | tig0022216:29411-29430 | None:intergenic | 25.0% |
| !!! | ATAATGAAGGCTCTAAATTA+CGG | + | tig0022216:29439-29458 | None:intergenic | 25.0% |
| !!! | ATTTGTTTGACTTTTTGTAC+AGG | - | tig0022216:29693-29712 | Msa1397890:intron | 25.0% |
| !! | TTTTTGTACAGGTTATCAAA+GGG | - | tig0022216:29704-29723 | Msa1397890:intron | 25.0% |
| !! | TGAAGATTTTGCATTTTACT+TGG | - | tig0022216:29894-29913 | Msa1397890:intron | 25.0% |
| ! | TCTTCATCAATAAAATAGTG+AGG | + | tig0022216:29994-30013 | None:intergenic | 25.0% |
| ! | CAGAAGAGAAATTATAATAG+AGG | - | tig0022216:30127-30146 | Msa1397890:CDS | 25.0% |
| !! | AATAGTAGTTTGTAATAGCA+AGG | + | tig0022216:30171-30190 | None:intergenic | 25.0% |
| ! | GTACTATTAAATATCTCAGA+AGG | - | tig0022216:30208-30227 | Msa1397890:CDS | 25.0% |
| CAAGTCTTAGATGATTGTTT+AGG | + | tig0022216:25814-25833 | None:intergenic | 30.0% | |
| ACTGAAAAATCAGATTGTTG+AGG | - | tig0022216:25910-25929 | Msa1397890:three_prime_UTR | 30.0% | |
| AGTTAGGTGTATCTTATCAA+TGG | - | tig0022216:26053-26072 | Msa1397890:CDS | 30.0% | |
| ! | AACACAAGAAAGTGAAGTTT+TGG | + | tig0022216:26197-26216 | None:intergenic | 30.0% |
| AAACTTCAACAAAATCACCA+TGG | + | tig0022216:26331-26350 | None:intergenic | 30.0% | |
| CAAAACATGCAGAAACATTA+TGG | - | tig0022216:26414-26433 | Msa1397890:intron | 30.0% | |
| GCATGTTTGATATAATGCTA+TGG | - | tig0022216:26443-26462 | Msa1397890:intron | 30.0% | |
| TGTCATCATTCTTCATAAGT+AGG | - | tig0022216:26610-26629 | Msa1397890:intron | 30.0% | |
| GTCATCATTCTTCATAAGTA+GGG | - | tig0022216:26611-26630 | Msa1397890:intron | 30.0% | |
| !! | AATTGAAGAGTTTCAAGTTG+TGG | - | tig0022216:26650-26669 | Msa1397890:intron | 30.0% |
| !! | ATTGAAGAGTTTCAAGTTGT+GGG | - | tig0022216:26651-26670 | Msa1397890:intron | 30.0% |
| ACAAACTTCAGAATTAATGC+AGG | + | tig0022216:26724-26743 | None:intergenic | 30.0% | |
| TCTTGTCATGTAATTGAGAA+TGG | - | tig0022216:26743-26762 | Msa1397890:intron | 30.0% | |
| ! | AATTAGCTGATTTAATCCTC+AGG | + | tig0022216:26872-26891 | None:intergenic | 30.0% |
| ! | CGAAATTTGAAACCATGAAT+TGG | + | tig0022216:26909-26928 | None:intergenic | 30.0% |
| TTATATTGAGGATGCAAATG+CGG | + | tig0022216:26940-26959 | None:intergenic | 30.0% | |
| CCTCAAAATCGTTTATATTG+AGG | + | tig0022216:26952-26971 | None:intergenic | 30.0% | |
| ! | CCTCAATATAAACGATTTTG+AGG | - | tig0022216:26949-26968 | Msa1397890:intron | 30.0% |
| ATGTTATAGGACATAGTAAG+AGG | + | tig0022216:27057-27076 | None:intergenic | 30.0% | |
| TTTGCTTAAGCTAAGTATAC+AGG | - | tig0022216:27198-27217 | Msa1397890:intron | 30.0% | |
| TACCAGATTAAGGATTTGAT+GGG | + | tig0022216:27291-27310 | None:intergenic | 30.0% | |
| ATACCAGATTAAGGATTTGA+TGG | + | tig0022216:27292-27311 | None:intergenic | 30.0% | |
| ATCATAAGAGCAAAGTAGAT+GGG | - | tig0022216:27343-27362 | Msa1397890:intron | 30.0% | |
| !!! | GTGAAGGATTTAGTTTTCAA+TGG | + | tig0022216:27503-27522 | None:intergenic | 30.0% |
| CTTGCAAAACATTGTTTCAA+GGG | - | tig0022216:27792-27811 | Msa1397890:intron | 30.0% | |
| ATTCCTGATTCAGTAACATT+TGG | - | tig0022216:28000-28019 | Msa1397890:intron | 30.0% | |
| AAAAAAGCTTCAATGCACTA+AGG | - | tig0022216:28046-28065 | Msa1397890:CDS | 30.0% | |
| TTATAGTCATGATGTAGTTG+TGG | + | tig0022216:28158-28177 | None:intergenic | 30.0% | |
| CTACATCATGACTATAATTG+AGG | - | tig0022216:28161-28180 | Msa1397890:intron | 30.0% | |
| GACTATAATTGAGGTTGTAT+CGG | - | tig0022216:28170-28189 | Msa1397890:intron | 30.0% | |
| ! | CAGTTTACAGTAAAAGGTTT+TGG | - | tig0022216:28266-28285 | Msa1397890:intron | 30.0% |
| !! | GAAAGGTATTTGATTGAAGA+TGG | + | tig0022216:28517-28536 | None:intergenic | 30.0% |
| !! | CAGTTTTAGTACAAGAAGAA+AGG | + | tig0022216:28534-28553 | None:intergenic | 30.0% |
| ! | AATTTTTGCATGTGCAAAGT+AGG | + | tig0022216:28660-28679 | None:intergenic | 30.0% |
| AAATATCAAAACAATGGCGA+CGG | + | tig0022216:28878-28897 | None:intergenic | 30.0% | |
| !! | TGAATCACAAACATTTTGGT+TGG | - | tig0022216:29080-29099 | Msa1397890:intron | 30.0% |
| ! | GTTAATCTCCTCCTTTTAAT+AGG | - | tig0022216:29204-29223 | Msa1397890:intron | 30.0% |
| CATTTGACAGTACTTTATCA+AGG | - | tig0022216:29271-29290 | Msa1397890:intron | 30.0% | |
| TAAAACCATGACAACAATTG+TGG | + | tig0022216:29304-29323 | None:intergenic | 30.0% | |
| CTTGATATTGGGATAAAGTT+CGG | + | tig0022216:29399-29418 | None:intergenic | 30.0% | |
| TACGTATGTGACAATAATGA+AGG | + | tig0022216:29452-29471 | None:intergenic | 30.0% | |
| ATTGTTTGTAACACATGTAC+CGG | + | tig0022216:29516-29535 | None:intergenic | 30.0% | |
| ! | CTTTTTGTACAGGTTATCAA+AGG | - | tig0022216:29703-29722 | Msa1397890:intron | 30.0% |
| ATTCTCTCATCATTTGTAGT+TGG | + | tig0022216:29796-29815 | None:intergenic | 30.0% | |
| AATTAGCCCAACATATTAGA+TGG | - | tig0022216:30248-30267 | Msa1397890:CDS | 30.0% | |
| TAGCTTCCATCTAATATGTT+GGG | + | tig0022216:30257-30276 | None:intergenic | 30.0% | |
| TTAGCTTCCATCTAATATGT+TGG | + | tig0022216:30258-30277 | None:intergenic | 30.0% | |
| TTCATCCATTTCACTGTGTT+GGG | + | tig0022216:25947-25966 | None:intergenic | 35.0% | |
| ATCCATGAATATCCAGAACT+TGG | - | tig0022216:25983-26002 | Msa1397890:three_prime_UTR | 35.0% | |
| !! | ATCCAAGTTCTGGATATTCA+TGG | + | tig0022216:25988-26007 | None:intergenic | 35.0% |
| ATATCCAGAACTTGGATATG+AGG | - | tig0022216:25991-26010 | Msa1397890:exon | 35.0% | |
| AATTCCTCATATCCAAGTTC+TGG | + | tig0022216:25998-26017 | None:intergenic | 35.0% | |
| TCATGACAAGTTCTGTGATA+AGG | - | tig0022216:26017-26036 | Msa1397890:CDS | 35.0% | |
| !! | TCAGCTCTAAGAGCAATAAA+AGG | + | tig0022216:26127-26146 | None:intergenic | 35.0% |
| ! | CTTTGAGTTTGTCGAAATCA+AGG | - | tig0022216:26303-26322 | Msa1397890:CDS | 35.0% |
| !! | TTGAAGAGTTTCAAGTTGTG+GGG | - | tig0022216:26652-26671 | Msa1397890:intron | 35.0% |
| ATAAGCTCATTGATGAGTGA+AGG | - | tig0022216:27130-27149 | Msa1397890:intron | 35.0% | |
| TAAGCTCATTGATGAGTGAA+GGG | - | tig0022216:27131-27150 | Msa1397890:intron | 35.0% | |
| GTTGTACTTTCAACCGTAAA+TGG | + | tig0022216:27177-27196 | None:intergenic | 35.0% | |
| TACAGGTGGTTTAATCTTCT+AGG | - | tig0022216:27215-27234 | Msa1397890:intron | 35.0% | |
| GATTAAGGATTTGATGGGAA+CGG | + | tig0022216:27286-27305 | None:intergenic | 35.0% | |
| TTCCCATCAAATCCTTAATC+TGG | - | tig0022216:27286-27305 | Msa1397890:intron | 35.0% | |
| GATCATAAGAGCAAAGTAGA+TGG | - | tig0022216:27342-27361 | Msa1397890:intron | 35.0% | |
| AAACTAAATCCTTCACATGC+AGG | - | tig0022216:27507-27526 | Msa1397890:intron | 35.0% | |
| ! | CATCTTCAAGCACATTTTCT+TGG | + | tig0022216:27594-27613 | None:intergenic | 35.0% |
| AAATGTGCTTGAAGATGTAG+TGG | - | tig0022216:27597-27616 | Msa1397890:intron | 35.0% | |
| !! | GAAGATGTAGTGGCTATTTT+CGG | - | tig0022216:27607-27626 | Msa1397890:intron | 35.0% |
| AGCTTCAAAGCAAAGATCAA+AGG | - | tig0022216:27703-27722 | Msa1397890:intron | 35.0% | |
| GCTTCAAAGCAAAGATCAAA+GGG | - | tig0022216:27704-27723 | Msa1397890:intron | 35.0% | |
| CTTCAAAGCAAAGATCAAAG+GGG | - | tig0022216:27705-27724 | Msa1397890:intron | 35.0% | |
| TTCAAAGCAAAGATCAAAGG+GGG | - | tig0022216:27706-27725 | Msa1397890:intron | 35.0% | |
| GCTTGCAAAACATTGTTTCA+AGG | - | tig0022216:27791-27810 | Msa1397890:intron | 35.0% | |
| TTTAGTGTTTGACTCAACCT+GGG | + | tig0022216:27836-27855 | None:intergenic | 35.0% | |
| ! | TTTTAGTGTTTGACTCAACC+TGG | + | tig0022216:27837-27856 | None:intergenic | 35.0% |
| CATATGAAGCTAAATTCTGC+AGG | - | tig0022216:27933-27952 | Msa1397890:intron | 35.0% | |
| TTGTCATAGTCTGAAGATCA+AGG | - | tig0022216:28120-28139 | Msa1397890:CDS | 35.0% | |
| ! | TAGTCTGAAGATCAAGGTTT+TGG | - | tig0022216:28126-28145 | Msa1397890:CDS | 35.0% |
| AGAGTGCAGTTTACAGTAAA+AGG | - | tig0022216:28260-28279 | Msa1397890:intron | 35.0% | |
| CTATATCATTGAGACACCAT+TGG | + | tig0022216:28301-28320 | None:intergenic | 35.0% | |
| TAAGATCCTTTCAATCCTTG+CGG | + | tig0022216:28616-28635 | None:intergenic | 35.0% | |
| ATGTGCAAAGTAGGCATAAA+AGG | + | tig0022216:28651-28670 | None:intergenic | 35.0% | |
| TCCAAAGAATCAACATCACA+AGG | - | tig0022216:28763-28782 | Msa1397890:intron | 35.0% | |
| !! | ACCTTGTGATGTTGATTCTT+TGG | + | tig0022216:28767-28786 | None:intergenic | 35.0% |
| !! | TGATGAAAAAGGCATTCTCA+AGG | + | tig0022216:28992-29011 | None:intergenic | 35.0% |
| GTGGAAGAGAATGATGAAAA+AGG | + | tig0022216:29003-29022 | None:intergenic | 35.0% | |
| GAGAATTCTTCAGTAGGTTT+GGG | + | tig0022216:29150-29169 | None:intergenic | 35.0% | |
| TGAGAATTCTTCAGTAGGTT+TGG | + | tig0022216:29151-29170 | None:intergenic | 35.0% | |
| ATCACTGAGAATTCTTCAGT+AGG | + | tig0022216:29156-29175 | None:intergenic | 35.0% | |
| GATGCAGTGTTCCTATTAAA+AGG | + | tig0022216:29218-29237 | None:intergenic | 35.0% | |
| CATAACCACAATTGTTGTCA+TGG | - | tig0022216:29296-29315 | Msa1397890:intron | 35.0% | |
| AGCAGTGACACTTCAAATTA+TGG | - | tig0022216:29471-29490 | Msa1397890:intron | 35.0% | |
| GCAGTGACACTTCAAATTAT+GGG | - | tig0022216:29472-29491 | Msa1397890:intron | 35.0% | |
| CTTCAAATTATGGGTGTGTA+TGG | - | tig0022216:29481-29500 | Msa1397890:intron | 35.0% | |
| ACACACACAATCATCAAAGA+AGG | - | tig0022216:29636-29655 | Msa1397890:intron | 35.0% | |
| ACACAATCATCAAAGAAGGA+AGG | - | tig0022216:29640-29659 | Msa1397890:intron | 35.0% | |
| TCTCATCATTTGTAGTTGGA+GGG | + | tig0022216:29792-29811 | None:intergenic | 35.0% | |
| CAAGCATCAAGTATGATTGT+TGG | - | tig0022216:29832-29851 | Msa1397890:intron | 35.0% | |
| !!! | TTTTACTTGGAAAAAGTGCC+CGG | - | tig0022216:29907-29926 | Msa1397890:intron | 35.0% |
| TCTCATTGTGAATACCTAAG+AGG | + | tig0022216:29942-29961 | None:intergenic | 35.0% | |
| CTTAGGTATTCACAATGAGA+AGG | - | tig0022216:29942-29961 | Msa1397890:CDS | 35.0% | |
| AGGACTATGAGCTGAATATA+TGG | + | tig0022216:29974-29993 | None:intergenic | 35.0% | |
| ATGGAAGCTAATTATGCTTC+AGG | - | tig0022216:30267-30286 | Msa1397890:CDS | 35.0% | |
| TCATCCATTTCACTGTGTTG+GGG | + | tig0022216:25946-25965 | None:intergenic | 40.0% | |
| CTTCATCCATTTCACTGTGT+TGG | + | tig0022216:25948-25967 | None:intergenic | 40.0% | |
| !! | ACAACTCCAGTTTTAGCAAC+AGG | + | tig0022216:26079-26098 | None:intergenic | 40.0% |
| ACTGGAGTTGTTGCTAAGAT+TGG | - | tig0022216:26088-26107 | Msa1397890:CDS | 40.0% | |
| ! | GTTGTTGCTAAGATTGGTTC+TGG | - | tig0022216:26094-26113 | Msa1397890:CDS | 40.0% |
| !! | GCTCTAAGAGCAATAAAAGG+AGG | + | tig0022216:26124-26143 | None:intergenic | 40.0% |
| TATTGCTCTTAGAGCTGACA+TGG | - | tig0022216:26129-26148 | Msa1397890:CDS | 40.0% | |
| ! | TTGTCGAAATCAAGGTACCA+TGG | - | tig0022216:26311-26330 | Msa1397890:CDS | 40.0% |
| CATAAGTAGGGTAGTAGTGT+TGG | - | tig0022216:26623-26642 | Msa1397890:intron | 40.0% | |
| GAGAATGGAGAAAGAAACAG+TGG | - | tig0022216:26758-26777 | Msa1397890:intron | 40.0% | |
| AAGCTCATTGATGAGTGAAG+GGG | - | tig0022216:27132-27151 | Msa1397890:intron | 40.0% | |
| GCTTAAGCTAAGTATACAGG+TGG | - | tig0022216:27201-27220 | Msa1397890:intron | 40.0% | |
| ! | GCAGGAAGTATACCAGATTA+AGG | + | tig0022216:27301-27320 | None:intergenic | 40.0% |
| !! | CCAACAGGAACTTGTTGATT+GGG | - | tig0022216:27320-27339 | Msa1397890:intron | 40.0% |
| TCTTATATTCCAACCAGCTG+AGG | - | tig0022216:27540-27559 | Msa1397890:intron | 40.0% | |
| ! | GCATTGTCTTGATCCTGTTT+TGG | - | tig0022216:27747-27766 | Msa1397890:intron | 40.0% |
| GCAAAACATTGTTTCAAGGG+AGG | - | tig0022216:27795-27814 | Msa1397890:intron | 40.0% | |
| AAACATTGTTTCAAGGGAGG+TGG | - | tig0022216:27798-27817 | Msa1397890:intron | 40.0% | |
| CCTCCAAATGTTACTGAATC+AGG | + | tig0022216:28006-28025 | None:intergenic | 40.0% | |
| CCTGATTCAGTAACATTTGG+AGG | - | tig0022216:28003-28022 | Msa1397890:intron | 40.0% | |
| ACTAAGGCAAAGGATAGAAG+AGG | - | tig0022216:28062-28081 | Msa1397890:CDS | 40.0% | |
| TTGATTGAAGATGGCAGTGT+TGG | + | tig0022216:28508-28527 | None:intergenic | 40.0% | |
| GTCGTCATTGTTCAGATCAT+GGG | + | tig0022216:28561-28580 | None:intergenic | 40.0% | |
| ATCATTGACAGTTCGTGCAT+TGG | + | tig0022216:28698-28717 | None:intergenic | 40.0% | |
| TGTCTCCTCGGATTTATATC+AGG | - | tig0022216:28733-28752 | Msa1397890:CDS | 40.0% | |
| AACAGCCTGATATAAATCCG+AGG | + | tig0022216:28741-28760 | None:intergenic | 40.0% | |
| ! | ACATCACAAGGTGTTCTCAA+AGG | - | tig0022216:28775-28794 | Msa1397890:intron | 40.0% |
| GACATGAATCATTTGCCTCT+AGG | - | tig0022216:28830-28849 | Msa1397890:intron | 40.0% | |
| TACAGATTTCGATGGAACCT+TGG | - | tig0022216:28897-28916 | Msa1397890:intron | 40.0% | |
| ACAGATTTCGATGGAACCTT+GGG | - | tig0022216:28898-28917 | Msa1397890:intron | 40.0% | |
| CATTTCTCAACTTGAACGCA+AGG | - | tig0022216:28943-28962 | Msa1397890:intron | 40.0% | |
| TTCTTTAGCAGACAGAAGTG+TGG | + | tig0022216:29022-29041 | None:intergenic | 40.0% | |
| ! | TTCTTCAGTAGGTTTGGGAT+CGG | + | tig0022216:29145-29164 | None:intergenic | 40.0% |
| CTGAAGAATTCTCAGTGATG+TGG | - | tig0022216:29157-29176 | Msa1397890:intron | 40.0% | |
| GAGATTAACTGCTTGTGTCA+AGG | + | tig0022216:29193-29212 | None:intergenic | 40.0% | |
| GCAGTGTTCCTATTAAAAGG+AGG | + | tig0022216:29215-29234 | None:intergenic | 40.0% | |
| ACTGTCAAATGTGACCTATG+TGG | + | tig0022216:29262-29281 | None:intergenic | 40.0% | |
| ! | AAGGGCAAGCAAAAGTACAT+AGG | - | tig0022216:29722-29741 | Msa1397890:intron | 40.0% |
| TTTGTAGTTGGAGGGATTGT+TGG | + | tig0022216:29784-29803 | None:intergenic | 40.0% | |
| CTCTCATCATTTGTAGTTGG+AGG | + | tig0022216:29793-29812 | None:intergenic | 40.0% | |
| GATGAGAGAATACACCAACT+TGG | - | tig0022216:29805-29824 | Msa1397890:intron | 40.0% | |
| TTGATGCTTGTCTTCCAAGT+TGG | + | tig0022216:29822-29841 | None:intergenic | 40.0% | |
| AAAATCTTCACTCGCTGTGT+AGG | + | tig0022216:29884-29903 | None:intergenic | 40.0% | |
| GGTATTCACAATGAGAAGGT+TGG | - | tig0022216:29946-29965 | Msa1397890:CDS | 40.0% | |
| GATGAAGATGTTCTTCCCAT+TGG | - | tig0022216:30006-30025 | Msa1397890:CDS | 40.0% | |
| AGAACCCCAACACAGTGAAA+TGG | - | tig0022216:25939-25958 | Msa1397890:three_prime_UTR | 45.0% | |
| CAATGGCCTGTTGCTAAAAC+TGG | - | tig0022216:26070-26089 | Msa1397890:CDS | 45.0% | |
| CATGGATGCTTTGCCAATTC+AGG | - | tig0022216:26147-26166 | Msa1397890:CDS | 45.0% | |
| ACAATTACGCTGAAACCGTG+CGG | + | tig0022216:27008-27027 | None:intergenic | 45.0% | |
| GGTTTCAGCGTAATTGTGAC+TGG | - | tig0022216:27011-27030 | Msa1397890:intron | 45.0% | |
| AGCTCATTGATGAGTGAAGG+GGG | - | tig0022216:27133-27152 | Msa1397890:intron | 45.0% | |
| ATCAACAAGTTCCTGTTGGC+AGG | + | tig0022216:27319-27338 | None:intergenic | 45.0% | |
| !! | GCCAACAGGAACTTGTTGAT+TGG | - | tig0022216:27319-27338 | Msa1397890:intron | 45.0% |
| CCCAATCAACAAGTTCCTGT+TGG | + | tig0022216:27323-27342 | None:intergenic | 45.0% | |
| !! | ACCAAGAAGCATCGCAACAT+GGG | + | tig0022216:27394-27413 | None:intergenic | 45.0% |
| CAATAGTAGCCTGCATGTGA+AGG | + | tig0022216:27519-27538 | None:intergenic | 45.0% | |
| TTCCAACCAGCTGAGGAAAA+AGG | - | tig0022216:27547-27566 | Msa1397890:intron | 45.0% | |
| TTAGCGACACAGTATCCCTT+AGG | - | tig0022216:27637-27656 | Msa1397890:intron | 45.0% | |
| CATCCTGCTAAAAAATCCCC+CGG | + | tig0022216:27679-27698 | None:intergenic | 45.0% | |
| !!! | GGGGATTTTTTAGCAGGATG+TGG | - | tig0022216:27679-27698 | Msa1397890:intron | 45.0% |
| !!! | TGTTTTGGCCGCTTCAATGT+CGG | - | tig0022216:27762-27781 | Msa1397890:intron | 45.0% |
| GCTAATCACCGACATTGAAG+CGG | + | tig0022216:27773-27792 | None:intergenic | 45.0% | |
| GACTCAACCTGGGAATCTAA+AGG | + | tig0022216:27826-27845 | None:intergenic | 45.0% | |
| AATTCTGCAGGTCCTTTCTG+TGG | - | tig0022216:27945-27964 | Msa1397890:intron | 45.0% | |
| GTTCATGAGAAGACTCTGAG+TGG | + | tig0022216:27978-27997 | None:intergenic | 45.0% | |
| GCTTCAATGCACTAAGGCAA+AGG | - | tig0022216:28052-28071 | Msa1397890:CDS | 45.0% | |
| !!! | GTTTTGGAGACCTCTACCAA+TGG | - | tig0022216:28282-28301 | Msa1397890:intron | 45.0% |
| CATTGAGACACCATTGGTAG+AGG | + | tig0022216:28295-28314 | None:intergenic | 45.0% | |
| CGTCGTCATTGTTCAGATCA+TGG | + | tig0022216:28562-28581 | None:intergenic | 45.0% | |
| TGATCTGAACAATGACGACG+CGG | - | tig0022216:28562-28581 | Msa1397890:intron | 45.0% | |
| ! | TTTCTAGTGCTCTGTCTCCT+CGG | - | tig0022216:28721-28740 | Msa1397890:CDS | 45.0% |
| ATGTCTAGCATCTGCTACTC+AGG | + | tig0022216:28815-28834 | None:intergenic | 45.0% | |
| TGGAACCTTGGGTCTATTGA+AGG | - | tig0022216:28909-28928 | Msa1397890:intron | 45.0% | |
| AACCTTGGGTCTATTGAAGG+TGG | - | tig0022216:28912-28931 | Msa1397890:intron | 45.0% | |
| TTCCACCTTCAATAGACCCA+AGG | + | tig0022216:28917-28936 | None:intergenic | 45.0% | |
| ! | GGTTTGGGATCGGATAAACT+GGG | + | tig0022216:29135-29154 | None:intergenic | 45.0% |
| ! | AGGTTTGGGATCGGATAAAC+TGG | + | tig0022216:29136-29155 | None:intergenic | 45.0% |
| TGTGTCTGCAATTGCAGTTG+TGG | + | tig0022216:29362-29381 | None:intergenic | 45.0% | |
| ! | TGTAACACATGTACCGGTGT+TGG | + | tig0022216:29510-29529 | None:intergenic | 45.0% |
| ACTGCAGAGGTTGAGTTCTT+TGG | - | tig0022216:29748-29767 | Msa1397890:intron | 45.0% | |
| ACCTAAGAGGAAAAGTGAGC+CGG | + | tig0022216:29929-29948 | None:intergenic | 45.0% | |
| !!! | ATTATTTAAATAAGTTTTAT+AGG | - | tig0022216:27470-27489 | Msa1397890:intron | 5.0% |
| AGGCGTGAGCTTGACAAGTT+AGG | - | tig0022216:26037-26056 | Msa1397890:CDS | 50.0% | |
| TGAGGATGCAAATGCGGTTG+CGG | + | tig0022216:26934-26953 | None:intergenic | 50.0% | |
| CAATTACGCTGAAACCGTGC+GGG | + | tig0022216:27007-27026 | None:intergenic | 50.0% | |
| CTGGTATACTTCCTGCCAAC+AGG | - | tig0022216:27305-27324 | Msa1397890:intron | 50.0% | |
| !! | CACCAAGAAGCATCGCAACA+TGG | + | tig0022216:27395-27414 | None:intergenic | 50.0% |
| ! | TGCCTTTTTCCTCAGCTGGT+TGG | + | tig0022216:27552-27571 | None:intergenic | 50.0% |
| ! | CCTATGCCTTTTTCCTCAGC+TGG | + | tig0022216:27556-27575 | None:intergenic | 50.0% |
| ! | CCAGCTGAGGAAAAAGGCAT+AGG | - | tig0022216:27553-27572 | Msa1397890:intron | 50.0% |
| CGTGATGCAACAACGCCTAA+GGG | + | tig0022216:27655-27674 | None:intergenic | 50.0% | |
| ! | CCTTAGGCGTTGTTGCATCA+CGG | - | tig0022216:27653-27672 | Msa1397890:intron | 50.0% |
| GACATTGAAGCGGCCAAAAC+AGG | + | tig0022216:27763-27782 | None:intergenic | 50.0% | |
| GGTGGATCCTTTAGATTCCC+AGG | - | tig0022216:27816-27835 | Msa1397890:intron | 50.0% | |
| AGTGGACCATTGCCACAGAA+AGG | + | tig0022216:27960-27979 | None:intergenic | 50.0% | |
| TCCTTTCAATCCTTGCGGCA+AGG | + | tig0022216:28611-28630 | None:intergenic | 50.0% | |
| CAATTGTGCTGTGGCCACAT+AGG | - | tig0022216:29245-29264 | Msa1397890:intron | 50.0% | |
| GTCTGCAATTGCAGTTGTGG+AGG | + | tig0022216:29359-29378 | None:intergenic | 50.0% | |
| AGTACATAGGTGCACTGCAG+AGG | - | tig0022216:29735-29754 | Msa1397890:intron | 50.0% | |
| TCTTCACTCGCTGTGTAGGT+TGG | + | tig0022216:29880-29899 | None:intergenic | 50.0% | |
| CCTAAGAGGAAAAGTGAGCC+GGG | + | tig0022216:29928-29947 | None:intergenic | 50.0% | |
| GCATGTATCGCAGCACCAAT+GGG | + | tig0022216:30024-30043 | None:intergenic | 50.0% | |
| TGCATGTATCGCAGCACCAA+TGG | + | tig0022216:30025-30044 | None:intergenic | 50.0% | |
| ! | AACTGCGCATTTTGCCCGCA+CGG | - | tig0022216:26990-27009 | Msa1397890:intron | 55.0% |
| GCCCATGTTGCGATGCTTCT+TGG | - | tig0022216:27390-27409 | Msa1397890:intron | 55.0% | |
| CCGTGATGCAACAACGCCTA+AGG | + | tig0022216:27656-27675 | None:intergenic | 55.0% | |
| GCAGGTCCTTTCTGTGGCAA+TGG | - | tig0022216:27951-27970 | Msa1397890:intron | 55.0% | |
| GCCTTGCCGCAAGGATTGAA+AGG | - | tig0022216:28607-28626 | Msa1397890:intron | 55.0% | |
| TCGCGACTGCAATTGTGCTG+TGG | - | tig0022216:29236-29255 | Msa1397890:intron | 55.0% | |
| GTGTGTATGGCGTCCAACAC+CGG | - | tig0022216:29494-29513 | Msa1397890:intron | 55.0% | |
| !! | CCCGGCTCACTTTTCCTCTT+AGG | - | tig0022216:29925-29944 | Msa1397890:intron | 55.0% |
| ! | AGGCGTTGTTGCATCACGGC+CGG | - | tig0022216:27657-27676 | Msa1397890:intron | 60.0% |
| !!! | CGGCCGGGGGATTTTTTAGC+AGG | - | tig0022216:27673-27692 | Msa1397890:intron | 60.0% |
| TGCGGCAAGGCTCGTACAAG+AGG | + | tig0022216:28598-28617 | None:intergenic | 60.0% | |
| CTTGTACGAGCCTTGCCGCA+AGG | - | tig0022216:28598-28617 | Msa1397890:intron | 60.0% | |
| GGAAGGTGAGCATGGCCTAG+AGG | + | tig0022216:28848-28867 | None:intergenic | 60.0% | |
| AGGCCATGCTCACCTTCCTC+TGG | - | tig0022216:28850-28869 | Msa1397890:intron | 60.0% | |
| GGCGTTGTTGCATCACGGCC+GGG | - | tig0022216:27658-27677 | Msa1397890:intron | 65.0% | |
| GCGTTGTTGCATCACGGCCG+GGG | - | tig0022216:27659-27678 | Msa1397890:intron | 65.0% | |
| CGTTGTTGCATCACGGCCGG+GGG | - | tig0022216:27660-27679 | Msa1397890:intron | 65.0% | |
| GCGCCAGAGGAAGGTGAGCA+TGG | + | tig0022216:28856-28875 | None:intergenic | 65.0% | |
| AACAATGGCGACGGCGCCAG+AGG | + | tig0022216:28869-28888 | None:intergenic | 65.0% | |
| ATGGCGACGGCGCCAGAGGA+AGG | + | tig0022216:28865-28884 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022216 | gene | 25806 | 30296 | 25806 | ID=Msa1397890;Name=Msa1397890 |
| tig0022216 | mRNA | 25806 | 30296 | 25806 | ID=Msa1397890-mRNA-1;Parent=Msa1397890;Name=Msa1397890-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.6|0.5|1|0.6|0.66|6|204|407 |
| tig0022216 | exon | 25806 | 26387 | 25806 | ID=Msa1397890-mRNA-1:exon:16360;Parent=Msa1397890-mRNA-1 |
| tig0022216 | exon | 28019 | 28147 | 28019 | ID=Msa1397890-mRNA-1:exon:16359;Parent=Msa1397890-mRNA-1 |
| tig0022216 | exon | 28340 | 28573 | 28340 | ID=Msa1397890-mRNA-1:exon:16358;Parent=Msa1397890-mRNA-1 |
| tig0022216 | exon | 28650 | 28775 | 28650 | ID=Msa1397890-mRNA-1:exon:16357;Parent=Msa1397890-mRNA-1 |
| tig0022216 | exon | 29934 | 30170 | 29934 | ID=Msa1397890-mRNA-1:exon:16356;Parent=Msa1397890-mRNA-1 |
| tig0022216 | exon | 30177 | 30296 | 30177 | ID=Msa1397890-mRNA-1:exon:16355;Parent=Msa1397890-mRNA-1 |
| tig0022216 | CDS | 30177 | 30296 | 30177 | ID=Msa1397890-mRNA-1:cds;Parent=Msa1397890-mRNA-1 |
| tig0022216 | CDS | 29934 | 30170 | 29934 | ID=Msa1397890-mRNA-1:cds;Parent=Msa1397890-mRNA-1 |
| tig0022216 | CDS | 28650 | 28775 | 28650 | ID=Msa1397890-mRNA-1:cds;Parent=Msa1397890-mRNA-1 |
| tig0022216 | CDS | 28340 | 28573 | 28340 | ID=Msa1397890-mRNA-1:cds;Parent=Msa1397890-mRNA-1 |
| tig0022216 | CDS | 28019 | 28147 | 28019 | ID=Msa1397890-mRNA-1:cds;Parent=Msa1397890-mRNA-1 |
| tig0022216 | CDS | 26010 | 26387 | 26010 | ID=Msa1397890-mRNA-1:cds;Parent=Msa1397890-mRNA-1 |
| tig0022216 | three_prime_UTR | 25806 | 26009 | 25806 | ID=Msa1397890-mRNA-1:three_prime_utr;Parent=Msa1397890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
