AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1298020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298020 MtrunA17_Chr4g0055391 91.743 327 17 1 1 317 1 327 0.0 583
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298020 AT5G47090.1 56.579 304 120 2 14 317 19 310 1.05e-106 314
Msa1298020 AT5G47090.2 56.579 304 120 2 14 317 19 310 1.05e-106 314

Find 118 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATAGGAGGAGGGCTTATT+TGG 0.186213 8_3:-58671527 Msa1298020:CDS
GCCATTACAAGCAAAATAAA+TGG 0.217003 8_3:-58667118 Msa1298020:three_prime_UTR
TGAGTATGTTGGGAAGTTTC+AGG 0.226641 8_3:-58671434 Msa1298020:CDS
CACTCGATCTCTTGTTGATT+TGG 0.253650 8_3:-58667293 Msa1298020:three_prime_UTR
AAAATAAATGGATGTTGTTT+TGG 0.276543 8_3:-58667106 Msa1298020:three_prime_UTR
ATTACCAATCCACTCGCTTC+TGG 0.278878 8_3:+58671291 None:intergenic
CTATACTGTACTTAAATTAA+CGG 0.317299 8_3:-58667392 Msa1298020:three_prime_UTR
TTTCCCAAGTTGGGGAGAAC+TGG 0.324188 8_3:-58667321 Msa1298020:three_prime_UTR
ATGCAGCAGAAGTTTCTATT+AGG 0.331657 8_3:-58667606 Msa1298020:CDS
TGGATAAGTTGATGGTTGGT+GGG 0.338567 8_3:-58671507 Msa1298020:CDS
TCTCTCTTCTGCATCAATAT+TGG 0.350041 8_3:+58667509 None:intergenic
CTCCAACTCTTCTGAAGTTA+AGG 0.352124 8_3:+58667656 None:intergenic
GGCTTATTTGGATAAGTTGA+TGG 0.354956 8_3:-58671515 Msa1298020:CDS
TACAGTATAGATTTGAAGAT+TGG 0.356169 8_3:+58667405 None:intergenic
GGAAGAAGAGGAAGAGGAGG+AGG 0.356366 8_3:-58671251 Msa1298020:CDS
AGAAGAGGAAGAGGAGGAGG+AGG 0.356540 8_3:-58671248 Msa1298020:CDS
TATCAAATCTAGAGAATCTA+TGG 0.357891 8_3:-58671792 Msa1298020:CDS
AGAGGAAGAGGAGGAGGAGG+AGG 0.367681 8_3:-58671245 Msa1298020:CDS
AAGATGATTACGAGATTAAC+TGG 0.368205 8_3:-58671621 Msa1298020:CDS
TTGGATAAGTTGATGGTTGG+TGG 0.372670 8_3:-58671508 Msa1298020:CDS
GGAGGAGGATGGCTAGGCCG+GGG 0.377867 8_3:-58671402 Msa1298020:CDS
GATTGGAACCGTAGCGTTCT+AGG 0.381445 8_3:+58671680 None:intergenic
GGGAAGTTTCAGGATAGGTT+TGG 0.382606 8_3:-58671424 Msa1298020:CDS
GGTTTCAAATTCAGTTAATT+CGG 0.382830 8_3:+58671648 None:intergenic
TGGGAGGAGGATGGCTAGGC+CGG 0.384998 8_3:-58671404 Msa1298020:CDS
TTACCAATCCACTCGCTTCT+GGG 0.400810 8_3:+58671292 None:intergenic
TAATTCGGTGGAAGTGAGAT+TGG 0.404173 8_3:+58671663 None:intergenic
GGAAGTTTCAGGATAGGTTT+GGG 0.406087 8_3:-58671423 Msa1298020:CDS
TTCAGGATAGGTTTGGGAGG+AGG 0.415738 8_3:-58671417 Msa1298020:CDS
CCCTCTGCCAATGGTCGTCA+AGG 0.418155 8_3:+58667535 None:intergenic
GTCCCCAGTTCTCCCCAACT+TGG 0.423346 8_3:+58667317 None:intergenic
GAGATTGTGGCTAAGATTAG+AGG 0.429365 8_3:-58671337 Msa1298020:CDS
AGAGGAGGAAGAAGAGGAAG+AGG 0.429775 8_3:-58671257 Msa1298020:CDS
GTGGAAGATGGATTTGCGTT+GGG 0.431930 8_3:+58671732 None:intergenic
GGGAGGAGGATGGCTAGGCC+GGG 0.441186 8_3:-58671403 Msa1298020:CDS
TTGGGAAGGGAGTGTGGCGG+TGG 0.442489 8_3:+58671750 None:intergenic
AGAGGGGAGCAGGAGAGGAT+TGG 0.449394 8_3:-58671319 Msa1298020:CDS
GGTTGGATCCTGCCTCGCTC+TGG 0.454781 8_3:+58667677 None:intergenic
TGATCCAGCCAGAGCGAGGC+AGG 0.455817 8_3:-58667685 Msa1298020:CDS
ATTTGCATTATGAGTATGTT+GGG 0.456022 8_3:-58671444 Msa1298020:CDS
AGTGGAAGATGGATTTGCGT+TGG 0.459799 8_3:+58671731 None:intergenic
CCTCCCATGTCAATATTAAG+AGG 0.462218 8_3:-58667260 Msa1298020:three_prime_UTR
GAGGAGGATGGCTAGGCCGG+GGG 0.464868 8_3:-58671401 Msa1298020:CDS
GGAGGAAGAAGAGGAAGAGG+AGG 0.467961 8_3:-58671254 Msa1298020:CDS
AACCTTAACTTCAGAAGAGT+TGG 0.468520 8_3:-58667658 Msa1298020:CDS
TATTTGGATAAGTTGATGGT+TGG 0.469239 8_3:-58671511 Msa1298020:CDS
GGCTAAGATTAGAGGGGAGC+AGG 0.469678 8_3:-58671329 Msa1298020:CDS
AGATGGATTTGCGTTGGGAA+GGG 0.470800 8_3:+58671737 None:intergenic
AACTCTTCTGAAGTTAAGGT+TGG 0.471512 8_3:+58667660 None:intergenic
AGACATGATGTAACTGATAA+TGG 0.472461 8_3:-58667714 Msa1298020:CDS
TTTGAGGAGGTGTGAGGAGG+CGG 0.475716 8_3:-58671359 Msa1298020:CDS
CTCCTCAACTCCTCCGTCGT+CGG 0.476973 8_3:+58671568 None:intergenic
GGATAAGTTGATGGTTGGTG+GGG 0.480000 8_3:-58671506 Msa1298020:CDS
TTCCCAAGTTGGGGAGAACT+GGG 0.480687 8_3:-58667320 Msa1298020:three_prime_UTR
AGGCTGTGGTTGCGAAGAAT+AGG 0.481727 8_3:-58671543 Msa1298020:CDS
GTGCCATTGTCACTTACATC+AGG 0.495094 8_3:+58667756 None:intergenic
TATTTGCATTATGAGTATGT+TGG 0.495284 8_3:-58671445 Msa1298020:CDS
AGTGAGAAGAGAGTGGAAGA+TGG 0.496332 8_3:+58671720 None:intergenic
AAGATGGATTTGCGTTGGGA+AGG 0.513028 8_3:+58671736 None:intergenic
AACCGTAGCGTTCTAGGAAG+AGG 0.515964 8_3:+58671686 None:intergenic
GTGTGAGGAGGCGGAGATTG+TGG 0.522176 8_3:-58671350 Msa1298020:CDS
ATGAGACCCTTGACGACCAT+TGG 0.525545 8_3:-58667542 Msa1298020:CDS
TTTGCGTTGGGAAGGGAGTG+TGG 0.530414 8_3:+58671744 None:intergenic
ACATCATGTCTCACTCGAGC+TGG 0.535245 8_3:+58667726 None:intergenic
AGATTAGAGGGGAGCAGGAG+AGG 0.536513 8_3:-58671324 Msa1298020:CDS
TAGATTTGAAGATTGGCAAA+CGG 0.539449 8_3:+58667412 None:intergenic
ATGTTGGGAAGTTTCAGGAT+AGG 0.539526 8_3:-58671429 Msa1298020:CDS
CTTAACTTCAGAAGAGTTGG+AGG 0.541692 8_3:-58667655 Msa1298020:CDS
TTCAAATTCAGTTAATTCGG+TGG 0.545769 8_3:+58671651 None:intergenic
TGTAAGTGAATTGATTCATC+CGG 0.545854 8_3:+58667631 None:intergenic
TTGTCACTTACATCAGGTTG+AGG 0.546551 8_3:+58667762 None:intergenic
TATTGGCCTCCCTCTGCCAA+TGG 0.551435 8_3:+58667526 None:intergenic
GGATAGGTTTGGGAGGAGGA+TGG 0.552430 8_3:-58671413 Msa1298020:CDS
CTTCAGAAGAGTTGGAGGAC+CGG 0.555990 8_3:-58667650 Msa1298020:CDS
AGCGAGTGGATTGGTAATGA+AGG 0.556176 8_3:-58671286 Msa1298020:CDS
TCCCCAGTTCTCCCCAACTT+GGG 0.559849 8_3:+58667318 None:intergenic
GATCTCTTGTTGATTTGGTG+AGG 0.563439 8_3:-58667288 Msa1298020:three_prime_UTR
GGTTTGGGAGGAGGATGGCT+AGG 0.565996 8_3:-58671408 Msa1298020:CDS
TGGTAATGAAGGACTTCAAG+AGG 0.567722 8_3:-58671275 Msa1298020:CDS
CCTCTGCCAATGGTCGTCAA+GGG 0.570477 8_3:+58667536 None:intergenic
GTCCGACGACGGAGGAGTTG+AGG 0.571986 8_3:-58671570 Msa1298020:CDS
GGAGTTGAGGAGGAAGGCTG+TGG 0.573275 8_3:-58671557 Msa1298020:CDS
AAATTTGCATGTGCTATAGC+TGG 0.577477 8_3:+58667050 None:intergenic
AGATTGTGGCTAAGATTAGA+GGG 0.578298 8_3:-58671336 Msa1298020:CDS
CTGTGGTTGCGAAGAATAGG+AGG 0.579748 8_3:-58671540 Msa1298020:CDS
CCCTTGACGACCATTGGCAG+AGG 0.580251 8_3:-58667536 Msa1298020:CDS
ACTTCAAGAGGAGGAAGAAG+AGG 0.587570 8_3:-58671263 Msa1298020:CDS
ACCGTAGCGTTCTAGGAAGA+GGG 0.588216 8_3:+58671687 None:intergenic
TGCACCTCTTAATATTGACA+TGG 0.588716 8_3:+58667256 None:intergenic
CGACGACGGAGGAGTTGAGG+AGG 0.594340 8_3:-58671567 Msa1298020:CDS
TAGCGTTCTAGGAAGAGGGA+TGG 0.596251 8_3:+58671691 None:intergenic
GGAGGCGATGAGAGAACGAG+AGG 0.599544 8_3:-58671470 Msa1298020:CDS
CAAATCAACAAGAGATCGAG+TGG 0.600743 8_3:+58667294 None:intergenic
GTATCAGACCACCTCTCCCC+CGG 0.601397 8_3:+58671385 None:intergenic
TCCCTCTTCCTAGAACGCTA+CGG 0.601725 8_3:-58671688 Msa1298020:CDS
ACTCAGTAGTAACTTGCTGT+TGG 0.603963 8_3:-58667355 Msa1298020:three_prime_UTR
TGGTTGCGAAGAATAGGAGG+AGG 0.610374 8_3:-58671537 Msa1298020:CDS
TGACGACCATTGGCAGAGGG+AGG 0.614328 8_3:-58667532 Msa1298020:CDS
AGATTAACTGGCATGTGACG+CGG 0.622675 8_3:-58671609 Msa1298020:CDS
CATCTGATCCAGCCAGAGCG+AGG 0.622685 8_3:-58667689 Msa1298020:CDS
CAACCTGATGTAAGTGACAA+TGG 0.623013 8_3:-58667759 Msa1298020:CDS
AGCGTTCTAGGAAGAGGGAT+GGG 0.626163 8_3:+58671692 None:intergenic
GGTCGCGAGTGAGAAGAGAG+TGG 0.633188 8_3:+58671713 None:intergenic
CCTTGACGACCATTGGCAGA+GGG 0.641904 8_3:-58667535 Msa1298020:CDS
GTGCCCAGAAGCGAGTGGAT+TGG 0.643717 8_3:-58671295 Msa1298020:CDS
GACGGAGGAGTTGAGGAGGA+AGG 0.645151 8_3:-58671563 Msa1298020:CDS
GCGTTGGGAAGGGAGTGTGG+CGG 0.647521 8_3:+58671747 None:intergenic
GCACCTCTTAATATTGACAT+GGG 0.647641 8_3:+58667257 None:intergenic
AGTTTCAGGATAGGTTTGGG+AGG 0.649952 8_3:-58671420 Msa1298020:CDS
CCTCTTAATATTGACATGGG+AGG 0.662291 8_3:+58667260 None:intergenic
TCCCAAGTTGGGGAGAACTG+GGG 0.670381 8_3:-58667319 Msa1298020:three_prime_UTR
CTTGTTGAGTCCGACGACGG+AGG 0.670780 8_3:-58671578 Msa1298020:CDS
AAGCTTGTTGAGTCCGACGA+CGG 0.671431 8_3:-58671581 Msa1298020:CDS
TTGGTGTGCCCAGAAGCGAG+TGG 0.671616 8_3:-58671300 Msa1298020:CDS
TAATGAAGGACTTCAAGAGG+AGG 0.688131 8_3:-58671272 Msa1298020:CDS
GGTTGCGAAGAATAGGAGGA+GGG 0.704365 8_3:-58671536 Msa1298020:CDS
AAATCAACAAGAGATCGAGT+GGG 0.712006 8_3:+58667295 None:intergenic
GATTGTGGCTAAGATTAGAG+GGG 0.720646 8_3:-58671335 Msa1298020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAATTTATATAATTTGTT+AGG - chr8_3:58668463-58668482 Msa1298020:intron 10.0%
!! AATAAGTTAAAAATAGCTTA+TGG - chr8_3:58668237-58668256 Msa1298020:intron 15.0%
!!! AATTTATATAATTTGTTAGG+TGG - chr8_3:58668466-58668485 Msa1298020:intron 15.0%
!! AATATTATAACAACATAGAT+TGG - chr8_3:58668806-58668825 Msa1298020:intron 15.0%
!! ACAATTTGGTTAAAAAAAAT+AGG - chr8_3:58669865-58669884 Msa1298020:intron 15.0%
!! TTGAATGTAATCAAATGTAT+AGG - chr8_3:58667857-58667876 Msa1298020:intron 20.0%
!!! AAGATTTTATTTTTCATGCT+AGG - chr8_3:58667960-58667979 Msa1298020:intron 20.0%
!!! TCTTATTTTGTTGCAAATAA+GGG + chr8_3:58668354-58668373 None:intergenic 20.0%
!!! TTCTTATTTTGTTGCAAATA+AGG + chr8_3:58668355-58668374 None:intergenic 20.0%
!! TTATTTGCAACAAAATAAGA+AGG - chr8_3:58668354-58668373 Msa1298020:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG - chr8_3:58668698-58668717 Msa1298020:intron 20.0%
!!! TTTACACAAACAATTTTGTA+AGG + chr8_3:58669330-58669349 None:intergenic 20.0%
!! AAAATTGTTTGTGTAAACTT+GGG - chr8_3:58669333-58669352 Msa1298020:intron 20.0%
!! TAAATTATGTGGTATTTCTT+TGG - chr8_3:58669661-58669680 Msa1298020:intron 20.0%
!! TTTGGTTAAAAAAAATAGGA+AGG - chr8_3:58669869-58669888 Msa1298020:intron 20.0%
!! TTAAAAAAAATAGGAAGGAT+AGG - chr8_3:58669874-58669893 Msa1298020:intron 20.0%
!!! ACAATTTTACAAATGATCAA+TGG - chr8_3:58669948-58669967 Msa1298020:intron 20.0%
!! ATTATAGGAAGATAAATAGT+AGG - chr8_3:58670472-58670491 Msa1298020:intron 20.0%
!! GTTTGATTAAATAGTAAAAG+AGG - chr8_3:58670635-58670654 Msa1298020:intron 20.0%
!! TATGTTAACAGATTTGAATA+AGG + chr8_3:58670824-58670843 None:intergenic 20.0%
!!! ATTCAAAAACAACATAGTTT+TGG + chr8_3:58671005-58671024 None:intergenic 20.0%
!! CTATACTGTACTTAAATTAA+CGG - chr8_3:58671516-58671535 Msa1298020:CDS 20.0%
!!! AAAATAAATGGATGTTGTTT+TGG - chr8_3:58671802-58671821 Msa1298020:CDS 20.0%
!!! GTTGTTTTGGATTAAATAAA+TGG - chr8_3:58671815-58671834 Msa1298020:CDS 20.0%
! TATCAAATCTAGAGAATCTA+TGG - chr8_3:58667116-58667135 Msa1298020:three_prime_UTR 25.0%
! GGTTTCAAATTCAGTTAATT+CGG + chr8_3:58667263-58667282 None:intergenic 25.0%
!! AATCTCGTAATCATCTTTTA+GGG + chr8_3:58667284-58667303 None:intergenic 25.0%
!! TAATCTCGTAATCATCTTTT+AGG + chr8_3:58667285-58667304 None:intergenic 25.0%
! TATTTGCATTATGAGTATGT+TGG - chr8_3:58667463-58667482 Msa1298020:three_prime_UTR 25.0%
! ATTTGCATTATGAGTATGTT+GGG - chr8_3:58667464-58667483 Msa1298020:three_prime_UTR 25.0%
! GTAACACAAATACATATCAA+AGG + chr8_3:58667912-58667931 None:intergenic 25.0%
!!! TAGCCATATTTTAACGTATA+GGG - chr8_3:58668018-58668037 Msa1298020:intron 25.0%
! AGTCACATATATGTTAATCT+GGG - chr8_3:58668552-58668571 Msa1298020:intron 25.0%
!!! AGAAAATTAAGGCTTTGTTT+GGG + chr8_3:58669034-58669053 None:intergenic 25.0%
! TAATGGAAGATAGAAAGTAA+AGG + chr8_3:58669094-58669113 None:intergenic 25.0%
! ATAAGAATGAGTAAAGCTAA+TGG + chr8_3:58669111-58669130 None:intergenic 25.0%
! CAAAATTGTTTGTGTAAACT+TGG - chr8_3:58669332-58669351 Msa1298020:intron 25.0%
!! AGGTCAACAATATTGATTAA+TGG - chr8_3:58669395-58669414 Msa1298020:intron 25.0%
!! ATCACTCAATTGTTGTATTT+TGG + chr8_3:58669459-58669478 None:intergenic 25.0%
! TAACATCGTGCAAAAATTTA+AGG - chr8_3:58669596-58669615 Msa1298020:intron 25.0%
! TTTCATTTATGTGGGATTAT+AGG + chr8_3:58669721-58669740 None:intergenic 25.0%
! AATAGAGTAGTGACTTAAAA+GGG + chr8_3:58669927-58669946 None:intergenic 25.0%
! TATTAGTTAATGAGGTAGTT+AGG + chr8_3:58670017-58670036 None:intergenic 25.0%
! TTAATAGATATAGATGTCAC+TGG - chr8_3:58670570-58670589 Msa1298020:intron 25.0%
! TTAGAAACAAAGAAAACCAT+CGG - chr8_3:58670693-58670712 Msa1298020:intron 25.0%
! TAGATTATTATTCATCAAGC+AGG + chr8_3:58670774-58670793 None:intergenic 25.0%
! ATCATGCAGTATATTCTAAA+TGG + chr8_3:58670864-58670883 None:intergenic 25.0%
!! GTTTAATCTTGTTTCTTACA+AGG - chr8_3:58670923-58670942 Msa1298020:intron 25.0%
!! TTTCTAATCTTTTGAGCTTT+GGG - chr8_3:58671031-58671050 Msa1298020:intron 25.0%
! TACAGTATAGATTTGAAGAT+TGG + chr8_3:58671506-58671525 None:intergenic 25.0%
!! AAACGTAAGTTTACAGTTTT+TGG + chr8_3:58671722-58671741 None:intergenic 25.0%
!!! TCCATTTATTTTGCTTGTAA+TGG + chr8_3:58671794-58671813 None:intergenic 25.0%
TTCAAATTCAGTTAATTCGG+TGG + chr8_3:58667260-58667279 None:intergenic 30.0%
AAGATGATTACGAGATTAAC+TGG - chr8_3:58667287-58667306 Msa1298020:three_prime_UTR 30.0%
!! TATTTGGATAAGTTGATGGT+TGG - chr8_3:58667397-58667416 Msa1298020:three_prime_UTR 30.0%
! CAAATGTATAGGTGTTATGT+TGG - chr8_3:58667868-58667887 Msa1298020:intron 30.0%
GCTAGGTCAATTATTCATTT+AGG - chr8_3:58667977-58667996 Msa1298020:intron 30.0%
!!! GTAGCCATATTTTAACGTAT+AGG - chr8_3:58668017-58668036 Msa1298020:intron 30.0%
TCTCCCTATACGTTAAAATA+TGG + chr8_3:58668024-58668043 None:intergenic 30.0%
ACTAAGTTGTTTATCCAAAC+AGG + chr8_3:58668102-58668121 None:intergenic 30.0%
TACCTATAAGATGTGTTCAT+AGG - chr8_3:58668207-58668226 Msa1298020:intron 30.0%
CCATAGGCATAAAGATTATT+TGG + chr8_3:58668391-58668410 None:intergenic 30.0%
CCAAATAATCTTTATGCCTA+TGG - chr8_3:58668388-58668407 Msa1298020:intron 30.0%
GCTTAGCTTAAATAGTTGAA+GGG - chr8_3:58668508-58668527 Msa1298020:intron 30.0%
GAGTCACATATATGTTAATC+TGG - chr8_3:58668551-58668570 Msa1298020:intron 30.0%
!! AATTCTCTTAGGCTTTGTTT+GGG - chr8_3:58668640-58668659 Msa1298020:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG + chr8_3:58668879-58668898 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG + chr8_3:58668880-58668899 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG + chr8_3:58668881-58668900 None:intergenic 30.0%
AGGGAACTCAAAAATTGTAT+TGG + chr8_3:58668882-58668901 None:intergenic 30.0%
TGGAAGAAATAGAAGACATT+GGG + chr8_3:58668961-58668980 None:intergenic 30.0%
!! GAGAAAATTAAGGCTTTGTT+TGG + chr8_3:58669035-58669054 None:intergenic 30.0%
AACATGAGCAGAGAAAATTA+AGG + chr8_3:58669045-58669064 None:intergenic 30.0%
TAGAAAATAGCCTTTGATCA+TGG - chr8_3:58669220-58669239 Msa1298020:intron 30.0%
AGAAAATAGCCTTTGATCAT+GGG - chr8_3:58669221-58669240 Msa1298020:intron 30.0%
TGACTGAGGATTAAATTATG+TGG - chr8_3:58669650-58669669 Msa1298020:intron 30.0%
ATTATGTGGTATTTCTTTGG+AGG - chr8_3:58669664-58669683 Msa1298020:intron 30.0%
TTATGTGGTATTTCTTTGGA+GGG - chr8_3:58669665-58669684 Msa1298020:intron 30.0%
TAAACAGAATGTGAAGAGTA+AGG - chr8_3:58669689-58669708 Msa1298020:intron 30.0%
TAATCCCACATAAATGAAAG+TGG - chr8_3:58669722-58669741 Msa1298020:intron 30.0%
! TAAGCCACTTTCATTTATGT+GGG + chr8_3:58669729-58669748 None:intergenic 30.0%
GCAGAATAGAAAGAACAATT+TGG - chr8_3:58669851-58669870 Msa1298020:intron 30.0%
ATAGAGTAGTGACTTAAAAG+GGG + chr8_3:58669926-58669945 None:intergenic 30.0%
GAATAGAGTAGTGACTTAAA+AGG + chr8_3:58669928-58669947 None:intergenic 30.0%
AGGACTACTATGTATAGATA+GGG + chr8_3:58669997-58670016 None:intergenic 30.0%
TAGGACTACTATGTATAGAT+AGG + chr8_3:58669998-58670017 None:intergenic 30.0%
AGGGAAGTTATTAGTTAATG+AGG + chr8_3:58670025-58670044 None:intergenic 30.0%
TAGAGTAGTTAAAGTTGCTA+AGG + chr8_3:58670056-58670075 None:intergenic 30.0%
TATTCTACATCCTAACACTA+TGG - chr8_3:58670083-58670102 Msa1298020:intron 30.0%
AAGTAACTATCCATAGTGTT+AGG + chr8_3:58670096-58670115 None:intergenic 30.0%
! ACTGTTTCTCTTGATATAGA+AGG + chr8_3:58670338-58670357 None:intergenic 30.0%
TCTATATCAAGAGAAACAGT+AGG - chr8_3:58670338-58670357 Msa1298020:intron 30.0%
TCACTGGATATAGAATTAGT+TGG - chr8_3:58670586-58670605 Msa1298020:intron 30.0%
CACTGGATATAGAATTAGTT+GGG - chr8_3:58670587-58670606 Msa1298020:intron 30.0%
TAAAAGAGGTTGAACTTAGA+AGG - chr8_3:58670649-58670668 Msa1298020:intron 30.0%
AAAAGAGGTTGAACTTAGAA+GGG - chr8_3:58670650-58670669 Msa1298020:intron 30.0%
TTAACAGATTTGAATAAGGC+AGG + chr8_3:58670820-58670839 None:intergenic 30.0%
TGTAAACAATGAACAGTTTG+AGG - chr8_3:58670975-58670994 Msa1298020:intron 30.0%
GTAAACAATGAACAGTTTGA+GGG - chr8_3:58670976-58670995 Msa1298020:intron 30.0%
! GTTTCTAATCTTTTGAGCTT+TGG - chr8_3:58671030-58671049 Msa1298020:intron 30.0%
! TTCTAATCTTTTGAGCTTTG+GGG - chr8_3:58671032-58671051 Msa1298020:intron 30.0%
TGGTATAACCATATGATTTG+TGG - chr8_3:58671072-58671091 Msa1298020:intron 30.0%
AGACATGATGTAACTGATAA+TGG - chr8_3:58671194-58671213 Msa1298020:intron 30.0%
! TGTAAGTGAATTGATTCATC+CGG + chr8_3:58671280-58671299 None:intergenic 30.0%
TAGATTTGAAGATTGGCAAA+CGG + chr8_3:58671499-58671518 None:intergenic 30.0%
GCCATTACAAGCAAAATAAA+TGG - chr8_3:58671790-58671809 Msa1298020:CDS 30.0%
! GGCTTATTTGGATAAGTTGA+TGG - chr8_3:58667393-58667412 Msa1298020:three_prime_UTR 35.0%
AGATTGTGGCTAAGATTAGA+GGG - chr8_3:58667572-58667591 Msa1298020:CDS 35.0%
CATGCACTAAACACATTCAT+CGG - chr8_3:58667790-58667809 Msa1298020:intron 35.0%
TTAACGTATAGGGAGAAAAC+AGG - chr8_3:58668028-58668047 Msa1298020:intron 35.0%
ACAGGAAGAGAACAATTCAA+TGG - chr8_3:58668046-58668065 Msa1298020:intron 35.0%
GTTGATCAATTGCTAGACTT+AGG - chr8_3:58668075-58668094 Msa1298020:intron 35.0%
AGCCTATGAACACATCTTAT+AGG + chr8_3:58668212-58668231 None:intergenic 35.0%
TGACATAAACACTTGTGAGA+CGG + chr8_3:58668298-58668317 None:intergenic 35.0%
! TTGCAAATAAGGGCTTGTTT+GGG + chr8_3:58668344-58668363 None:intergenic 35.0%
AAATAATTGCTGCAAGCCAT+AGG + chr8_3:58668407-58668426 None:intergenic 35.0%
! ATTTGTTAGGTGGTTGTAGT+TGG - chr8_3:58668476-58668495 Msa1298020:intron 35.0%
GGCTTAGCTTAAATAGTTGA+AGG - chr8_3:58668507-58668526 Msa1298020:intron 35.0%
TTGAAGGGATAGAACTAGAA+GGG - chr8_3:58668523-58668542 Msa1298020:intron 35.0%
TGACTCAATTAGTGTGAACA+GGG - chr8_3:58668587-58668606 Msa1298020:intron 35.0%
!! GAATTCTCTTAGGCTTTGTT+TGG - chr8_3:58668639-58668658 Msa1298020:intron 35.0%
TCAAAAATTGTATTGGGGGA+GGG + chr8_3:58668875-58668894 None:intergenic 35.0%
!!! TTTTTGAGTTCCCTCAAATG+AGG - chr8_3:58668888-58668907 Msa1298020:intron 35.0%
!!! TTTTGAGTTCCCTCAAATGA+GGG - chr8_3:58668889-58668908 Msa1298020:intron 35.0%
AAAAAATCCCCCTCATTTGA+GGG + chr8_3:58668901-58668920 None:intergenic 35.0%
TAAAAAATCCCCCTCATTTG+AGG + chr8_3:58668902-58668921 None:intergenic 35.0%
AAGAAATAGAAGACATTGGG+AGG + chr8_3:58668958-58668977 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG + chr8_3:58668962-58668981 None:intergenic 35.0%
!!! GAGGGTTTTGGAAAAAATGA+AGG + chr8_3:58668990-58669009 None:intergenic 35.0%
CCAAAAAAATTCAGAAGGTC+GGG + chr8_3:58669153-58669172 None:intergenic 35.0%
CCCAAAAAAATTCAGAAGGT+CGG + chr8_3:58669154-58669173 None:intergenic 35.0%
!!! CCGACCTTCTGAATTTTTTT+GGG - chr8_3:58669151-58669170 Msa1298020:intron 35.0%
!!! CGACCTTCTGAATTTTTTTG+GGG - chr8_3:58669152-58669171 Msa1298020:intron 35.0%
!!! GACCTTCTGAATTTTTTTGG+GGG - chr8_3:58669153-58669172 Msa1298020:intron 35.0%
ATCCCCCAAAAAAATTCAGA+AGG + chr8_3:58669158-58669177 None:intergenic 35.0%
!!! CTGAATTTTTTTGGGGGATA+TGG - chr8_3:58669159-58669178 Msa1298020:intron 35.0%
!!! ATTTTTTTGGGGGATATGGA+CGG - chr8_3:58669163-58669182 Msa1298020:intron 35.0%
! AAGTTGGTCGATTCTATAAG+TGG + chr8_3:58669275-58669294 None:intergenic 35.0%
TGCATGGAATTATGAGTTTG+AGG - chr8_3:58669362-58669381 Msa1298020:intron 35.0%
!! TAGAAAGTGTTTAACCTCCA+GGG + chr8_3:58669429-58669448 None:intergenic 35.0%
!! TTAGAAAGTGTTTAACCTCC+AGG + chr8_3:58669430-58669449 None:intergenic 35.0%
! GTTTGGTTCAATCAACACAT+TGG + chr8_3:58669522-58669541 None:intergenic 35.0%
AGATAGGTTTCAGCTAATCA+TGG + chr8_3:58669544-58669563 None:intergenic 35.0%
! GCAAAAATTTAAGGTCCTAG+TGG - chr8_3:58669605-58669624 Msa1298020:intron 35.0%
! TATGTGGTATTTCTTTGGAG+GGG - chr8_3:58669666-58669685 Msa1298020:intron 35.0%
! GTAAGCCACTTTCATTTATG+TGG + chr8_3:58669730-58669749 None:intergenic 35.0%
TACTAGATTTAGAAGAGCTG+TGG - chr8_3:58669747-58669766 Msa1298020:intron 35.0%
TCAATTTCATGCACTGTGTT+AGG - chr8_3:58669814-58669833 Msa1298020:intron 35.0%
TTCTATTCTGCTCAGTTCTT+GGG + chr8_3:58669842-58669861 None:intergenic 35.0%
TTTCTATTCTGCTCAGTTCT+TGG + chr8_3:58669843-58669862 None:intergenic 35.0%
TAGAGTAGTGACTTAAAAGG+GGG + chr8_3:58669925-58669944 None:intergenic 35.0%
! ATGTATAGATAGGGAGGTTT+TGG + chr8_3:58669988-58670007 None:intergenic 35.0%
ACTACTATGTATAGATAGGG+AGG + chr8_3:58669994-58670013 None:intergenic 35.0%
AGATCAAATGAGTTCTCTTC+AGG + chr8_3:58670152-58670171 None:intergenic 35.0%
AACTCATTTGATCTGTTTCG+TGG - chr8_3:58670158-58670177 Msa1298020:intron 35.0%
!! AGAATGTGAGGCTTTAGATT+GGG + chr8_3:58670194-58670213 None:intergenic 35.0%
!! AAGAATGTGAGGCTTTAGAT+TGG + chr8_3:58670195-58670214 None:intergenic 35.0%
! AATCTAAAGCCTCACATTCT+TGG - chr8_3:58670194-58670213 Msa1298020:intron 35.0%
GTTTCTCTTGATATAGAAGG+TGG + chr8_3:58670335-58670354 None:intergenic 35.0%
TTGTCTAGAAAAAGAGAGCA+TGG - chr8_3:58670374-58670393 Msa1298020:intron 35.0%
AAACAAAGAAAACCATCGGA+AGG - chr8_3:58670697-58670716 Msa1298020:intron 35.0%
ACAAGGAGTAATCAATGACA+TGG - chr8_3:58670940-58670959 Msa1298020:intron 35.0%
GGGAGTTCAAGTATAATGAA+TGG - chr8_3:58671052-58671071 Msa1298020:intron 35.0%
TGATCAGTCCACAAATCATA+TGG + chr8_3:58671083-58671102 None:intergenic 35.0%
!!! TTTCCTTTTTTTTCCGCTAC+CGG - chr8_3:58671111-58671130 Msa1298020:intron 35.0%
!! AACTCTTCTGAAGTTAAGGT+TGG + chr8_3:58671251-58671270 None:intergenic 35.0%
AACCTTAACTTCAGAAGAGT+TGG - chr8_3:58671250-58671269 Msa1298020:CDS 35.0%
ATGCAGCAGAAGTTTCTATT+AGG - chr8_3:58671302-58671321 Msa1298020:CDS 35.0%
TCTCTCTTCTGCATCAATAT+TGG + chr8_3:58671402-58671421 None:intergenic 35.0%
!!! AGCGTTTTATTTTCCCAAGT+TGG - chr8_3:58671577-58671596 Msa1298020:CDS 35.0%
!!! GCGTTTTATTTTCCCAAGTT+GGG - chr8_3:58671578-58671597 Msa1298020:CDS 35.0%
!!! CGTTTTATTTTCCCAAGTTG+GGG - chr8_3:58671579-58671598 Msa1298020:CDS 35.0%
AAATCAACAAGAGATCGAGT+GGG + chr8_3:58671616-58671635 None:intergenic 35.0%
GCACCTCTTAATATTGACAT+GGG + chr8_3:58671654-58671673 None:intergenic 35.0%
TGCACCTCTTAATATTGACA+TGG + chr8_3:58671655-58671674 None:intergenic 35.0%
!! TCGCTCACTTCGTTTTTCTT+CGG + chr8_3:58667067-58667086 None:intergenic 40.0%
! TAATTCGGTGGAAGTGAGAT+TGG + chr8_3:58667248-58667267 None:intergenic 40.0%
!! TTGGATAAGTTGATGGTTGG+TGG - chr8_3:58667400-58667419 Msa1298020:three_prime_UTR 40.0%
!! TGGATAAGTTGATGGTTGGT+GGG - chr8_3:58667401-58667420 Msa1298020:three_prime_UTR 40.0%
!!! GGTTGGTGGGGTTTATTTTT+CGG - chr8_3:58667414-58667433 Msa1298020:three_prime_UTR 40.0%
TGAGTATGTTGGGAAGTTTC+AGG - chr8_3:58667474-58667493 Msa1298020:exon 40.0%
ATGTTGGGAAGTTTCAGGAT+AGG - chr8_3:58667479-58667498 Msa1298020:exon 40.0%
GGAAGTTTCAGGATAGGTTT+GGG - chr8_3:58667485-58667504 Msa1298020:exon 40.0%
GAGATTGTGGCTAAGATTAG+AGG - chr8_3:58667571-58667590 Msa1298020:CDS 40.0%
GATTGTGGCTAAGATTAGAG+GGG - chr8_3:58667573-58667592 Msa1298020:CDS 40.0%
! TGGTAATGAAGGACTTCAAG+AGG - chr8_3:58667633-58667652 Msa1298020:CDS 40.0%
TAATGAAGGACTTCAAGAGG+AGG - chr8_3:58667636-58667655 Msa1298020:CDS 40.0%
TGTTGAAAAAGACGAGACTG+TGG - chr8_3:58667702-58667721 Msa1298020:CDS 40.0%
! GTTGCAAATAAGGGCTTGTT+TGG + chr8_3:58668345-58668364 None:intergenic 40.0%
GTTGAAGGGATAGAACTAGA+AGG - chr8_3:58668522-58668541 Msa1298020:intron 40.0%
GTGACTCAATTAGTGTGAAC+AGG - chr8_3:58668586-58668605 Msa1298020:intron 40.0%
CTAAGAGAATTCTGCTTCCA+AGG + chr8_3:58668631-58668650 None:intergenic 40.0%
CTTGGAAGCAGAATTCTCTT+AGG - chr8_3:58668629-58668648 Msa1298020:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG - chr8_3:58668647-58668666 Msa1298020:intron 40.0%
CTCAAAAATTGTATTGGGGG+AGG + chr8_3:58668876-58668895 None:intergenic 40.0%
! TTTGAGTTCCCTCAAATGAG+GGG - chr8_3:58668890-58668909 Msa1298020:intron 40.0%
GGAAAAAATGAAGGAGCAAG+TGG + chr8_3:58668981-58669000 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG + chr8_3:58669027-58669046 None:intergenic 40.0%
!!! CCCGACCTTCTGAATTTTTT+TGG - chr8_3:58669150-58669169 Msa1298020:intron 40.0%
AAGTTCAACTGAATGCCACA+AGG + chr8_3:58669197-58669216 None:intergenic 40.0%
CAATGGTATCCCATGATCAA+AGG + chr8_3:58669233-58669252 None:intergenic 40.0%
ATCGACCAACTTTACTACTC+TGG - chr8_3:58669283-58669302 Msa1298020:intron 40.0%
ACCAACTTTACTACTCTGGT+TGG - chr8_3:58669287-58669306 Msa1298020:intron 40.0%
ACCAACCAGAGTAGTAAAGT+TGG + chr8_3:58669291-58669310 None:intergenic 40.0%
! TAAACTTGGGTAGTCTTGCA+TGG - chr8_3:58669346-58669365 Msa1298020:intron 40.0%
GATTAATGGTTATTCACCCC+TGG - chr8_3:58669409-58669428 Msa1298020:intron 40.0%
!! AGAAAGTGTTTAACCTCCAG+GGG + chr8_3:58669428-58669447 None:intergenic 40.0%
GGTTTCAGCTAATCATGGTT+TGG + chr8_3:58669539-58669558 None:intergenic 40.0%
!! ATTTAGCTTGGTGTGGAGAT+AGG + chr8_3:58669560-58669579 None:intergenic 40.0%
TAGATTTAGAAGAGCTGTGG+AGG - chr8_3:58669750-58669769 Msa1298020:intron 40.0%
AGTTGCTAAGGAGCAAGTAA+GGG + chr8_3:58670044-58670063 None:intergenic 40.0%
AAGTTGCTAAGGAGCAAGTA+AGG + chr8_3:58670045-58670064 None:intergenic 40.0%
ATCTGTCTTAGTAGTAGGGT+AGG + chr8_3:58670243-58670262 None:intergenic 40.0%
GTGCATCTGTCTTAGTAGTA+GGG + chr8_3:58670247-58670266 None:intergenic 40.0%
TGTGCATCTGTCTTAGTAGT+AGG + chr8_3:58670248-58670267 None:intergenic 40.0%
ACTACTAAGACAGATGCACA+AGG - chr8_3:58670248-58670267 Msa1298020:intron 40.0%
AGAAGATGTACAAGCGAATG+AGG - chr8_3:58670413-58670432 Msa1298020:intron 40.0%
TTGGCAATTGAGAAATCCCT+CGG + chr8_3:58670508-58670527 None:intergenic 40.0%
ATTGCCAAGGTGGAATTTCT+AGG - chr8_3:58670520-58670539 Msa1298020:intron 40.0%
TTGCCAAGGTGGAATTTCTA+GGG - chr8_3:58670521-58670540 Msa1298020:intron 40.0%
! TTGTCACTTACATCAGGTTG+AGG + chr8_3:58671149-58671168 None:intergenic 40.0%
CAACCTGATGTAAGTGACAA+TGG - chr8_3:58671149-58671168 Msa1298020:intron 40.0%
!! CTCCAACTCTTCTGAAGTTA+AGG + chr8_3:58671255-58671274 None:intergenic 40.0%
CTTAACTTCAGAAGAGTTGG+AGG - chr8_3:58671253-58671272 Msa1298020:CDS 40.0%
!! ACTCAGTAGTAACTTGCTGT+TGG - chr8_3:58671553-58671572 Msa1298020:CDS 40.0%
CAAATCAACAAGAGATCGAG+TGG + chr8_3:58671617-58671636 None:intergenic 40.0%
! CACTCGATCTCTTGTTGATT+TGG - chr8_3:58671615-58671634 Msa1298020:CDS 40.0%
!! GATCTCTTGTTGATTTGGTG+AGG - chr8_3:58671620-58671639 Msa1298020:CDS 40.0%
CCTCTTAATATTGACATGGG+AGG + chr8_3:58671651-58671670 None:intergenic 40.0%
CCTCCCATGTCAATATTAAG+AGG - chr8_3:58671648-58671667 Msa1298020:CDS 40.0%
! AGATGGATTTGCGTTGGGAA+GGG + chr8_3:58667174-58667193 None:intergenic 45.0%
! AAGATGGATTTGCGTTGGGA+AGG + chr8_3:58667175-58667194 None:intergenic 45.0%
! GTGGAAGATGGATTTGCGTT+GGG + chr8_3:58667179-58667198 None:intergenic 45.0%
! AGTGGAAGATGGATTTGCGT+TGG + chr8_3:58667180-58667199 None:intergenic 45.0%
AGTGAGAAGAGAGTGGAAGA+TGG + chr8_3:58667191-58667210 None:intergenic 45.0%
AGATTAACTGGCATGTGACG+CGG - chr8_3:58667299-58667318 Msa1298020:three_prime_UTR 45.0%
GAATAGGAGGAGGGCTTATT+TGG - chr8_3:58667381-58667400 Msa1298020:three_prime_UTR 45.0%
!! GGATAAGTTGATGGTTGGTG+GGG - chr8_3:58667402-58667421 Msa1298020:three_prime_UTR 45.0%
!! TGGTGGGGTTTATTTTTCGG+AGG - chr8_3:58667417-58667436 Msa1298020:three_prime_UTR 45.0%
!! TGGGGTTTATTTTTCGGAGG+AGG - chr8_3:58667420-58667439 Msa1298020:three_prime_UTR 45.0%
GGGAAGTTTCAGGATAGGTT+TGG - chr8_3:58667484-58667503 Msa1298020:exon 45.0%
AGTTTCAGGATAGGTTTGGG+AGG - chr8_3:58667488-58667507 Msa1298020:exon 45.0%
! GGTGGTCTGATACACTTTTG+AGG - chr8_3:58667533-58667552 Msa1298020:CDS 45.0%
!! GGTCTGATACACTTTTGAGG+AGG - chr8_3:58667536-58667555 Msa1298020:CDS 45.0%
!! TACACTTTTGAGGAGGTGTG+AGG - chr8_3:58667543-58667562 Msa1298020:CDS 45.0%
TTACCAATCCACTCGCTTCT+GGG + chr8_3:58667619-58667638 None:intergenic 45.0%
ATTACCAATCCACTCGCTTC+TGG + chr8_3:58667620-58667639 None:intergenic 45.0%
!! AGCGAGTGGATTGGTAATGA+AGG - chr8_3:58667622-58667641 Msa1298020:CDS 45.0%
ACTTCAAGAGGAGGAAGAAG+AGG - chr8_3:58667645-58667664 Msa1298020:CDS 45.0%
TGAAAAAGACGAGACTGTGG+AGG - chr8_3:58667705-58667724 Msa1298020:CDS 45.0%
TTTAGTGCATGTGTCGTGTC+TGG + chr8_3:58667781-58667800 None:intergenic 45.0%
TGCTAGACTTAGGTCCTGTT+TGG - chr8_3:58668085-58668104 Msa1298020:intron 45.0%
TAGGTGGTTGTAGTTGGAAC+AGG - chr8_3:58668482-58668501 Msa1298020:intron 45.0%
TGGTTGTAGTTGGAACAGGA+GGG - chr8_3:58668486-58668505 Msa1298020:intron 45.0%
AAGGGATAGAACTAGAAGGG+AGG - chr8_3:58668526-58668545 Msa1298020:intron 45.0%
AGGGATAGAACTAGAAGGGA+GGG - chr8_3:58668527-58668546 Msa1298020:intron 45.0%
TTCCAAGGCCTTTCACCAAA+GGG + chr8_3:58668616-58668635 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr8_3:58668651-58668670 Msa1298020:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr8_3:58668652-58668671 Msa1298020:intron 45.0%
! TTGTATTGGGGGAGGGTTTT+GGG + chr8_3:58668868-58668887 None:intergenic 45.0%
! ATTGTATTGGGGGAGGGTTT+TGG + chr8_3:58668869-58668888 None:intergenic 45.0%
TTGAGTTCCCTCAAATGAGG+GGG - chr8_3:58668891-58668910 Msa1298020:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG + chr8_3:58668952-58668971 None:intergenic 45.0%
ATAGAAGACATTGGGAGGAG+AGG + chr8_3:58668953-58668972 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr8_3:58668652-58668671 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr8_3:58668651-58668670 None:intergenic 45.0%
CAGAAGGTCGGGTTATATCA+TGG + chr8_3:58669142-58669161 None:intergenic 45.0%
GAGTTTGAGGACAGTTGAAC+AGG - chr8_3:58669375-58669394 Msa1298020:intron 45.0%
TAATGGTTATTCACCCCTGG+AGG - chr8_3:58669412-58669431 Msa1298020:intron 45.0%
! CAATCAACACATTGGCCTGT+TGG + chr8_3:58669514-58669533 None:intergenic 45.0%
TTGCACGATGTTACCTTCGT+TGG + chr8_3:58669589-58669608 None:intergenic 45.0%
ACCAATGCTCACCAATGCTT+GGG + chr8_3:58669631-58669650 None:intergenic 45.0%
AGAGAGAACTCTCCTCCAAA+GGG - chr8_3:58669897-58669916 Msa1298020:intron 45.0%
ACTTAAAAGGGGGAACCCTT+TGG + chr8_3:58669915-58669934 None:intergenic 45.0%
!!! GGAGGTTTTGGAGTTAGAGA+GGG + chr8_3:58669976-58669995 None:intergenic 45.0%
GCGAAAACTACTTCAAGCAG+GGG + chr8_3:58670221-58670240 None:intergenic 45.0%
GGCGAAAACTACTTCAAGCA+GGG + chr8_3:58670222-58670241 None:intergenic 45.0%
AGGCGAAAACTACTTCAAGC+AGG + chr8_3:58670223-58670242 None:intergenic 45.0%
ACTAAGACAGATGCACAAGG+AGG - chr8_3:58670251-58670270 Msa1298020:intron 45.0%
GAGGGATTTCTCAATTGCCA+AGG - chr8_3:58670507-58670526 Msa1298020:intron 45.0%
GGATTTCTCAATTGCCAAGG+TGG - chr8_3:58670510-58670529 Msa1298020:intron 45.0%
! TGCCAAGGTGGAATTTCTAG+GGG - chr8_3:58670522-58670541 Msa1298020:intron 45.0%
AGAGGTTGAACTTAGAAGGG+AGG - chr8_3:58670653-58670672 Msa1298020:intron 45.0%
GAGGTTGAACTTAGAAGGGA+GGG - chr8_3:58670654-58670673 Msa1298020:intron 45.0%
AGGTTGAACTTAGAAGGGAG+GGG - chr8_3:58670655-58670674 Msa1298020:intron 45.0%
TGTGAGAATTCTCCTTCCGA+TGG + chr8_3:58670712-58670731 None:intergenic 45.0%
! GTGCCATTGTCACTTACATC+AGG + chr8_3:58671155-58671174 None:intergenic 45.0%
!! AGCGTTCTAGGAAGAGGGAT+GGG + chr8_3:58667219-58667238 None:intergenic 50.0%
!! TAGCGTTCTAGGAAGAGGGA+TGG + chr8_3:58667220-58667239 None:intergenic 50.0%
TCCCTCTTCCTAGAACGCTA+CGG - chr8_3:58667220-58667239 Msa1298020:three_prime_UTR 50.0%
!! ACCGTAGCGTTCTAGGAAGA+GGG + chr8_3:58667224-58667243 None:intergenic 50.0%
!! AACCGTAGCGTTCTAGGAAG+AGG + chr8_3:58667225-58667244 None:intergenic 50.0%
GATTGGAACCGTAGCGTTCT+AGG + chr8_3:58667231-58667250 None:intergenic 50.0%
!! AAGCTTGTTGAGTCCGACGA+CGG - chr8_3:58667327-58667346 Msa1298020:three_prime_UTR 50.0%
AGGCTGTGGTTGCGAAGAAT+AGG - chr8_3:58667365-58667384 Msa1298020:three_prime_UTR 50.0%
CTGTGGTTGCGAAGAATAGG+AGG - chr8_3:58667368-58667387 Msa1298020:three_prime_UTR 50.0%
TGGTTGCGAAGAATAGGAGG+AGG - chr8_3:58667371-58667390 Msa1298020:three_prime_UTR 50.0%
GGTTGCGAAGAATAGGAGGA+GGG - chr8_3:58667372-58667391 Msa1298020:three_prime_UTR 50.0%
TTCAGGATAGGTTTGGGAGG+AGG - chr8_3:58667491-58667510 Msa1298020:CDS 50.0%
!! ACTTTTGAGGAGGTGTGAGG+AGG - chr8_3:58667546-58667565 Msa1298020:CDS 50.0%
AGAGGAGGAAGAAGAGGAAG+AGG - chr8_3:58667651-58667670 Msa1298020:CDS 50.0%
GTGGTTGTAGTTGGAACAGG+AGG - chr8_3:58668485-58668504 Msa1298020:intron 50.0%
GTGTGAACAGGGAAACCCTT+TGG - chr8_3:58668598-58668617 Msa1298020:intron 50.0%
CAGGGAAACCCTTTGGTGAA+AGG - chr8_3:58668605-58668624 Msa1298020:intron 50.0%
AACCCTTTGGTGAAAGGCCT+TGG - chr8_3:58668611-58668630 Msa1298020:intron 50.0%
CTTCCAAGGCCTTTCACCAA+AGG + chr8_3:58668617-58668636 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr8_3:58668650-58668669 Msa1298020:intron 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG - chr8_3:58668657-58668676 Msa1298020:intron 50.0%
! TGTATTGGGGGAGGGTTTTG+GGG + chr8_3:58668867-58668886 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr8_3:58668650-58668669 None:intergenic 50.0%
TGGACGGAGTTCAAACCTTG+TGG - chr8_3:58669179-58669198 Msa1298020:intron 50.0%
ATTGCAGTGAACCCACCAAC+AGG - chr8_3:58669496-58669515 Msa1298020:intron 50.0%
! CAACACATTGGCCTGTTGGT+GGG + chr8_3:58669510-58669529 None:intergenic 50.0%
! TCAACACATTGGCCTGTTGG+TGG + chr8_3:58669511-58669530 None:intergenic 50.0%
!! GAGCTGGATTTAGCTTGGTG+TGG + chr8_3:58669567-58669586 None:intergenic 50.0%
CGTTGGAGCTGGATTTAGCT+TGG + chr8_3:58669572-58669591 None:intergenic 50.0%
GCTAAATCCAGCTCCAACGA+AGG - chr8_3:58669573-58669592 Msa1298020:intron 50.0%
GATGTTACCTTCGTTGGAGC+TGG + chr8_3:58669583-58669602 None:intergenic 50.0%
CACCAATGCTCACCAATGCT+TGG + chr8_3:58669632-58669651 None:intergenic 50.0%
!! TTGGTGAGCATTGGTGACTG+AGG - chr8_3:58669636-58669655 Msa1298020:intron 50.0%
GAGAGAGAACTCTCCTCCAA+AGG - chr8_3:58669896-58669915 Msa1298020:intron 50.0%
TAAAAGGGGGAACCCTTTGG+AGG + chr8_3:58669912-58669931 None:intergenic 50.0%
!!! GGGAGGTTTTGGAGTTAGAG+AGG + chr8_3:58669977-58669996 None:intergenic 50.0%
!! TGAGGCTTTAGATTGGGCTG+GGG + chr8_3:58670188-58670207 None:intergenic 50.0%
!! GTGAGGCTTTAGATTGGGCT+GGG + chr8_3:58670189-58670208 None:intergenic 50.0%
!! TGTGAGGCTTTAGATTGGGC+TGG + chr8_3:58670190-58670209 None:intergenic 50.0%
GTTGCACCACTGTGAAACAG+AGG - chr8_3:58670305-58670324 Msa1298020:intron 50.0%
GGTACTCCTCTGTTTCACAG+TGG + chr8_3:58670314-58670333 None:intergenic 50.0%
ATAATGCCTCTTCTGCCCCT+CGG + chr8_3:58670457-58670476 None:intergenic 50.0%
!! AGGGGCAGAAGAGGCATTAT+AGG - chr8_3:58670457-58670476 Msa1298020:intron 50.0%
TAGTAGGAATCCTGATGCCG+AGG - chr8_3:58670488-58670507 Msa1298020:intron 50.0%
AGTAGGAATCCTGATGCCGA+GGG - chr8_3:58670489-58670508 Msa1298020:intron 50.0%
TTGAGAAATCCCTCGGCATC+AGG + chr8_3:58670501-58670520 None:intergenic 50.0%
GTCCCCTAGAAATTCCACCT+TGG + chr8_3:58670527-58670546 None:intergenic 50.0%
GGTTGAACTTAGAAGGGAGG+GGG - chr8_3:58670656-58670675 Msa1298020:intron 50.0%
!! CTGCCGGTAGCGGAAAAAAA+AGG + chr8_3:58671117-58671136 None:intergenic 50.0%
ACATCATGTCTCACTCGAGC+TGG + chr8_3:58671185-58671204 None:intergenic 50.0%
CTTCAGAAGAGTTGGAGGAC+CGG - chr8_3:58671258-58671277 Msa1298020:CDS 50.0%
ATGAGACCCTTGACGACCAT+TGG - chr8_3:58671366-58671385 Msa1298020:CDS 50.0%
! TTTCCCAAGTTGGGGAGAAC+TGG - chr8_3:58671587-58671606 Msa1298020:CDS 50.0%
! TTCCCAAGTTGGGGAGAACT+GGG - chr8_3:58671588-58671607 Msa1298020:CDS 50.0%
TTTGCGTTGGGAAGGGAGTG+TGG + chr8_3:58667167-58667186 None:intergenic 55.0%
GGATAGGTTTGGGAGGAGGA+TGG - chr8_3:58667495-58667514 Msa1298020:CDS 55.0%
! TTTGAGGAGGTGTGAGGAGG+CGG - chr8_3:58667549-58667568 Msa1298020:CDS 55.0%
GGCTAAGATTAGAGGGGAGC+AGG - chr8_3:58667579-58667598 Msa1298020:CDS 55.0%
AGATTAGAGGGGAGCAGGAG+AGG - chr8_3:58667584-58667603 Msa1298020:CDS 55.0%
GGAGGAAGAAGAGGAAGAGG+AGG - chr8_3:58667654-58667673 Msa1298020:CDS 55.0%
GGAAGAAGAGGAAGAGGAGG+AGG - chr8_3:58667657-58667676 Msa1298020:CDS 55.0%
AGAAGAGGAAGAGGAGGAGG+AGG - chr8_3:58667660-58667679 Msa1298020:CDS 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG - chr8_3:58668656-58668675 Msa1298020:intron 55.0%
!! TTTTGGGGGGGGGTTATGGA+GGG + chr8_3:58668852-58668871 None:intergenic 55.0%
!!! TATTGGGGGAGGGTTTTGGG+GGG + chr8_3:58668865-58668884 None:intergenic 55.0%
!! GTATTGGGGGAGGGTTTTGG+GGG + chr8_3:58668866-58668885 None:intergenic 55.0%
ACATTGGGAGGAGAGGGCTT+TGG + chr8_3:58668946-58668965 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG + chr8_3:58669017-58669036 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG + chr8_3:58668656-58668675 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG + chr8_3:58668655-58668674 None:intergenic 55.0%
CGACTCTTGCTCTCAGGCAA+TGG + chr8_3:58669250-58669269 None:intergenic 55.0%
TCACCAATGCTTGGGCCACT+AGG + chr8_3:58669623-58669642 None:intergenic 55.0%
!! GCCCAAGCATTGGTGAGCAT+TGG - chr8_3:58669627-58669646 Msa1298020:intron 55.0%
AGCAGGGGTCCAAGAATGTG+AGG + chr8_3:58670206-58670225 None:intergenic 55.0%
ACAGAGAGACTGTCCAACCG+AGG - chr8_3:58670437-58670456 Msa1298020:intron 55.0%
CAGAGAGACTGTCCAACCGA+GGG - chr8_3:58670438-58670457 Msa1298020:intron 55.0%
AGAGAGACTGTCCAACCGAG+GGG - chr8_3:58670439-58670458 Msa1298020:intron 55.0%
GTTGAGGTGTGTGTCTCTGC+CGG + chr8_3:58671133-58671152 None:intergenic 55.0%
CCTCTGCCAATGGTCGTCAA+GGG + chr8_3:58671375-58671394 None:intergenic 55.0%
CCTTGACGACCATTGGCAGA+GGG - chr8_3:58671373-58671392 Msa1298020:CDS 55.0%
! TATTGGCCTCCCTCTGCCAA+TGG + chr8_3:58671385-58671404 None:intergenic 55.0%
! TCCCAAGTTGGGGAGAACTG+GGG - chr8_3:58671589-58671608 Msa1298020:CDS 55.0%
TCCCCAGTTCTCCCCAACTT+GGG + chr8_3:58671593-58671612 None:intergenic 55.0%
GGTCGCGAGTGAGAAGAGAG+TGG + chr8_3:58667198-58667217 None:intergenic 60.0%
CTTGTTGAGTCCGACGACGG+AGG - chr8_3:58667330-58667349 Msa1298020:three_prime_UTR 60.0%
CTCCTCAACTCCTCCGTCGT+CGG + chr8_3:58667343-58667362 None:intergenic 60.0%
GACGGAGGAGTTGAGGAGGA+AGG - chr8_3:58667345-58667364 Msa1298020:three_prime_UTR 60.0%
GGAGTTGAGGAGGAAGGCTG+TGG - chr8_3:58667351-58667370 Msa1298020:three_prime_UTR 60.0%
GGAGGCGATGAGAGAACGAG+AGG - chr8_3:58667438-58667457 Msa1298020:three_prime_UTR 60.0%
GGTTTGGGAGGAGGATGGCT+AGG - chr8_3:58667500-58667519 Msa1298020:CDS 60.0%
GTATCAGACCACCTCTCCCC+CGG + chr8_3:58667526-58667545 None:intergenic 60.0%
GTGTGAGGAGGCGGAGATTG+TGG - chr8_3:58667558-58667577 Msa1298020:CDS 60.0%
AGAGGGGAGCAGGAGAGGAT+TGG - chr8_3:58667589-58667608 Msa1298020:CDS 60.0%
TTGGTGTGCCCAGAAGCGAG+TGG - chr8_3:58667608-58667627 Msa1298020:CDS 60.0%
GTGCCCAGAAGCGAGTGGAT+TGG - chr8_3:58667613-58667632 Msa1298020:CDS 60.0%
AGAGGAAGAGGAGGAGGAGG+AGG - chr8_3:58667663-58667682 Msa1298020:CDS 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG - chr8_3:58668661-58668680 Msa1298020:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr8_3:58668662-58668681 Msa1298020:intron 60.0%
!!! GTTTTGGGGGGGGGTTATGG+AGG + chr8_3:58668853-58668872 None:intergenic 60.0%
!!! AGGGTTTTGGGGGGGGGTTA+TGG + chr8_3:58668856-58668875 None:intergenic 60.0%
!!! ATTGGGGGAGGGTTTTGGGG+GGG + chr8_3:58668864-58668883 None:intergenic 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG + chr8_3:58668943-58668962 None:intergenic 60.0%
GTGGCTCGACTCTTGCTCTC+AGG + chr8_3:58669256-58669275 None:intergenic 60.0%
GGTCCTAGTGGCCCAAGCAT+TGG - chr8_3:58669617-58669636 Msa1298020:intron 60.0%
GTGTGTGTCTCTGCCGGTAG+CGG + chr8_3:58671127-58671146 None:intergenic 60.0%
CATCTGATCCAGCCAGAGCG+AGG - chr8_3:58671219-58671238 Msa1298020:intron 60.0%
CCCTTGACGACCATTGGCAG+AGG - chr8_3:58671372-58671391 Msa1298020:CDS 60.0%
CCCTCTGCCAATGGTCGTCA+AGG + chr8_3:58671376-58671395 None:intergenic 60.0%
TGACGACCATTGGCAGAGGG+AGG - chr8_3:58671376-58671395 Msa1298020:CDS 60.0%
GTCCCCAGTTCTCCCCAACT+TGG + chr8_3:58671594-58671613 None:intergenic 60.0%
!! GCGGTGGATTGTTGAGCGCG+TGG + chr8_3:58667145-58667164 None:intergenic 65.0%
! TTGGGAAGGGAGTGTGGCGG+TGG + chr8_3:58667161-58667180 None:intergenic 65.0%
! GCGTTGGGAAGGGAGTGTGG+CGG + chr8_3:58667164-58667183 None:intergenic 65.0%
GTCCGACGACGGAGGAGTTG+AGG - chr8_3:58667338-58667357 Msa1298020:three_prime_UTR 65.0%
CGACGACGGAGGAGTTGAGG+AGG - chr8_3:58667341-58667360 Msa1298020:three_prime_UTR 65.0%
TGGGAGGAGGATGGCTAGGC+CGG - chr8_3:58667504-58667523 Msa1298020:CDS 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG - chr8_3:58668660-58668679 Msa1298020:intron 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr8_3:58668665-58668684 Msa1298020:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr8_3:58668666-58668685 Msa1298020:intron 65.0%
GGAAGGGAGGGGAGGGCTTT+GGG - chr8_3:58668673-58668692 Msa1298020:intron 65.0%
GAAGGGAGGGGAGGGCTTTG+GGG - chr8_3:58668674-58668693 Msa1298020:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG - chr8_3:58668675-58668694 Msa1298020:intron 65.0%
!!! TTGGGGGAGGGTTTTGGGGG+GGG + chr8_3:58668863-58668882 None:intergenic 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG + chr8_3:58669012-58669031 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG + chr8_3:58669013-58669032 None:intergenic 65.0%
GTCCAACCGAGGGGCAGAAG+AGG - chr8_3:58670448-58670467 Msa1298020:intron 65.0%
TGCCTCTTCTGCCCCTCGGT+TGG + chr8_3:58670453-58670472 None:intergenic 65.0%
TGATCCAGCCAGAGCGAGGC+AGG - chr8_3:58671223-58671242 Msa1298020:intron 65.0%
GGTTGGATCCTGCCTCGCTC+TGG + chr8_3:58671234-58671253 None:intergenic 65.0%
GGGAGGAGGATGGCTAGGCC+GGG - chr8_3:58667505-58667524 Msa1298020:CDS 70.0%
GGAGGAGGATGGCTAGGCCG+GGG - chr8_3:58667506-58667525 Msa1298020:CDS 70.0%
GAGGAGGATGGCTAGGCCGG+GGG - chr8_3:58667507-58667526 Msa1298020:CDS 70.0%
GGGAAGGGAGGGGAGGGCTT+TGG - chr8_3:58668672-58668691 Msa1298020:intron 70.0%
!! AGGGAGGGGAGGGCTTTGGG+GGG - chr8_3:58668676-58668695 Msa1298020:intron 70.0%
!! AGGGGAGGGCTTTGGGGGGT+TGG - chr8_3:58668680-58668699 Msa1298020:intron 70.0%
!!! TGGGGGAGGGTTTTGGGGGG+GGG + chr8_3:58668862-58668881 None:intergenic 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG + chr8_3:58669002-58669021 None:intergenic 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG + chr8_3:58669008-58669027 None:intergenic 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG + chr8_3:58669009-58669028 None:intergenic 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG + chr8_3:58669014-58669033 None:intergenic 70.0%
GGATCCTGCCTCGCTCTGGC+TGG + chr8_3:58671230-58671249 None:intergenic 70.0%
GGATGGCTAGGCCGGGGGAG+AGG - chr8_3:58667512-58667531 Msa1298020:CDS 75.0%
TGGCTAGGCCGGGGGAGAGG+TGG - chr8_3:58667515-58667534 Msa1298020:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 58667052 58671878 58667052 ID=Msa1298020;Name=Msa1298020
chr8_3 mRNA 58667052 58671878 58667052 ID=Msa1298020-mRNA-1;Parent=Msa1298020;Name=Msa1298020-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0.5|1|0|1|2|439|317
chr8_3 exon 58667052 58667793 58667052 ID=Msa1298020-mRNA-1:exon:16832;Parent=Msa1298020-mRNA-1
chr8_3 exon 58671228 58671878 58671228 ID=Msa1298020-mRNA-1:exon:16831;Parent=Msa1298020-mRNA-1
chr8_3 CDS 58671228 58671878 58671228 ID=Msa1298020-mRNA-1:cds;Parent=Msa1298020-mRNA-1
chr8_3 CDS 58667491 58667793 58667491 ID=Msa1298020-mRNA-1:cds;Parent=Msa1298020-mRNA-1
chr8_3 three_prime_UTR 58667052 58667490 58667052 ID=Msa1298020-mRNA-1:three_prime_utr;Parent=Msa1298020-mRNA-1
Gene Sequence

>Msa1298020

ATGGAAGTGAAGCCGAAGAAAAACGAAGTGAGCGAAGAAGCAAAAGAGAAAATCTCAGAAAGACTATCAAATCTAGAGAATCTATGGTTTCCACGCGCTCAACAATCCACCGCCACACTCCCTTCCCAACGCAAATCCATCTTCCACTCTCTTCTCACTCGCGACCCATCCCTCTTCCTAGAACGCTACGGTTCCAATCTCACTTCCACCGAATTAACTGAATTTGAAACCCTAAAAGATGATTACGAGATTAACTGGCATGTGACGCGGTTGCAAAGCTTGTTGAGTCCGACGACGGAGGAGTTGAGGAGGAAGGCTGTGGTTGCGAAGAATAGGAGGAGGGCTTATTTGGATAAGTTGATGGTTGGTGGGGTTTATTTTTCGGAGGAGGCGATGAGAGAACGAGAGGCGTATTTGCATTATGAGTATGTTGGGAAGTTTCAGGATAGGTTTGGGAGGAGGATGGCTAGGCCGGGGGAGAGGTGGTCTGATACACTTTTGAGGAGGTGTGAGGAGGCGGAGATTGTGGCTAAGATTAGAGGGGAGCAGGAGAGGATTGGTGTGCCCAGAAGCGAGTGGATTGGTAATGAAGGACTTCAAGAGGAGGAAGAAGAGGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGATAGACACACACCTCAACCTGATGTAAGTGACAATGGCACATCTGATCCAGCTCGAGTGAGACATGATGTAACTGATAATGGCACATCTGATCCAGCCAGAGCGAGGCAGGATCCAACCTTAACTTCAGAAGAGTTGGAGGACCGGATGAATCAATTCACTTACATCATGCAGCAGAAGTTTCTATTAGGAGAAGATCACGAACATGTAGATTATGCTAAAATAGATAATGATGAGACCCTTGACGACCATTGGCAGAGGGAGGCCAATATTGATGCAGAAGAGAGATATTTTGCTGATGATTAA
Protein sequence

>Msa1298020

MEVKPKKNEVSEEAKEKISERLSNLENLWFPRAQQSTATLPSQRKSIFHSLLTRDPSLFLERYGSNLTSTELTEFETLKDDYEINWHVTRLQSLLSPTTEELRRKAVVAKNRRRAYLDKLMVGGVYFSEEAMREREAYLHYEYVGKFQDRFGRRMARPGERWSDTLLRRCEEAEIVAKIRGEQERIGVPRSEWIGNEGLQEEEEEEEEEEEEEEEEDRHTPQPDVSDNGTSDPARVRHDVTDNGTSDPARARQDPTLTSEELEDRMNQFTYIMQQKFLLGEDHEHVDYAKIDNDETLDDHWQREANIDAEERYFADD*