AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465080 MtrunA17_Chr8g0334441 100.000 64 0 0 1 64 1 64 1.31e-43 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465080 AT3G08610.1 75.000 64 16 0 1 64 1 64 2.50e-33 108

Find 35 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATAAATCTTGGTATTTA+TGG 0.074576 tig0044869:+5919 Msa1465080:three_prime_UTR
TAGGGTACCTGTTTGTTAAT+TGG 0.273208 tig0044869:-4509 Msa1465080:intergenic
ACATAAATCTTGGTATTTAT+GGG 0.302254 tig0044869:+5920 Msa1465080:three_prime_UTR
TGCTGGAATGCTTTGTGTTA+TGG 0.308874 tig0044869:+4272 Msa1465080:CDS
GCTGGAATGCTTTGTGTTAT+GGG 0.333642 tig0044869:+4273 Msa1465080:CDS
TTACCTTTGGGAATAATTGC+TGG 0.341296 tig0044869:+4255 Msa1465080:CDS
GTTGGAAGCTATGTTACCTT+TGG 0.352532 tig0044869:+4242 Msa1465080:CDS
AAGGCAAGGATTGGGATTAC+AGG 0.384711 tig0044869:-5986 Msa1465080:intergenic
TTGTGCTTTGACATAAATCT+TGG 0.394534 tig0044869:+5910 Msa1465080:three_prime_UTR
TTGGAAGCTATGTTACCTTT+GGG 0.406774 tig0044869:+4243 Msa1465080:CDS
CTCTGCTTCCATGGAACAGC+TGG 0.418718 tig0044869:-5732 Msa1465080:intergenic
TCTTCTTCCAATTAACAAAC+AGG 0.422157 tig0044869:+4502 Msa1465080:exon
CTTCTTGTCCCTACGTTCCA+TGG 0.446698 tig0044869:-4464 None:intergenic
AAATCATTGCCGATGTGCTT+AGG 0.473520 tig0044869:-4430 None:intergenic
AGTGAGTCTTGAAGAAGGAG+AGG 0.485634 tig0044869:+4162 None:intergenic
AGCACATCGGCAATGATTTG+TGG 0.486432 tig0044869:+4434 Msa1465080:CDS
AGAGATGGCGTTGCATTGGT+TGG 0.487344 tig0044869:+4224 Msa1465080:exon
AAGTGAGTGAGTCTTGAAGA+AGG 0.499853 tig0044869:+4157 None:intergenic
GCACATCGGCAATGATTTGT+GGG 0.508503 tig0044869:+4435 Msa1465080:CDS
AGAGAGAGATGGCGTTGCAT+TGG 0.509492 tig0044869:+4220 Msa1465080:exon
AGCAATCTACTCTGCTTCCA+TGG 0.524941 tig0044869:-5741 Msa1465080:intergenic
CGGCAATGATTTGTGGGACG+TGG 0.531999 tig0044869:+4441 Msa1465080:CDS
ATACACATCAGAAAGAAAGA+AGG 0.534582 tig0044869:+4187 Msa1465080:five_prime_UTR
GTTGCTCTCCAGCTGTTCCA+TGG 0.544090 tig0044869:+5705 Msa1465080:three_prime_UTR
TATGTATATTATAACGCTTA+CGG 0.553100 tig0044869:-5802 Msa1465080:intergenic
TGATTTGTGGGACGTGGCCA+TGG 0.553811 tig0044869:+4447 Msa1465080:CDS
GGACGTGGCCATGGAACGTA+GGG 0.570234 tig0044869:+4456 Msa1465080:CDS
GGAATTGAAGAAGAGAGAGA+TGG 0.582978 tig0044869:+4209 Msa1465080:exon
TACACATCAGAAAGAAAGAA+GGG 0.590836 tig0044869:+4188 Msa1465080:five_prime_UTR
ATTCCAGCAATTATTCCCAA+AGG 0.601922 tig0044869:-4258 Msa1465080:intergenic
TGTGGTTAGCCTAAGCACAT+CGG 0.628887 tig0044869:+4421 Msa1465080:intron
ATTTCATACAAGAAAACACA+TGG 0.631983 tig0044869:-5776 Msa1465080:intergenic
CTCGTCCGTGAGCAGCTCTG+TGG 0.632697 tig0044869:-4314 Msa1465080:intergenic
TACATCCACAGAGCTGCTCA+CGG 0.640107 tig0044869:+4309 Msa1465080:CDS
GGGACGTGGCCATGGAACGT+AGG 0.664354 tig0044869:+4455 Msa1465080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAATTGAATTGAAT+TGG + tig0044869:4389-4408 Msa1465080:intron 10.0%
!! AAATTAAAATTGAATTGAAT+TGG + tig0044869:4389-4408 Msa1465080:intron 10.0%
!! AAAAGAAAGAAAGAAAAAAA+GGG - tig0044869:4538-4557 Msa1465080:intergenic 15.0%
!! AAAAAGAAAGAAAGAAAAAA+AGG - tig0044869:4539-4558 Msa1465080:intergenic 15.0%
!! AAAAGAAAGAAAGAAAAAAA+GGG - tig0044869:4538-4557 Msa1465080:intergenic 15.0%
!! AAAAAGAAAGAAAGAAAAAA+AGG - tig0044869:4539-4558 Msa1465080:intergenic 15.0%
!! AAAGAAAGAAAGAAAAAAAG+GGG - tig0044869:4537-4556 Msa1465080:intergenic 20.0%
!!! TAAAACTTAATTTTCCTATC+AGG + tig0044869:4650-4669 Msa1465080:intron 20.0%
!! TTTAATTATTCTATCCTGAT+AGG - tig0044869:4667-4686 Msa1465080:intergenic 20.0%
!! TTCTCATATAAATGCAAATA+AGG - tig0044869:4886-4905 Msa1465080:intergenic 20.0%
!! CTCAAAATCTTAAAACTATT+TGG + tig0044869:5099-5118 Msa1465080:intron 20.0%
!! ATATAATTTCTTGCCATTAT+CGG + tig0044869:5248-5267 Msa1465080:intron 20.0%
!!! TTTCTTTTTTCTCTCAATAA+AGG - tig0044869:5470-5489 Msa1465080:intergenic 20.0%
!! TACATAAAGAAAATCAAATC+TGG - tig0044869:5589-5608 Msa1465080:intergenic 20.0%
!! CTTTATGTATGAAATTATCA+AGG + tig0044869:5600-5619 Msa1465080:intron 20.0%
!! ATTTATATGTTTCCAAATGT+AGG + tig0044869:5641-5660 Msa1465080:intron 20.0%
!! TATGTATATTATAACGCTTA+CGG - tig0044869:5786-5805 Msa1465080:intergenic 20.0%
!! ACATAAATCTTGGTATTTAT+GGG + tig0044869:5920-5939 Msa1465080:three_prime_UTR 20.0%
!! AAAGAAAGAAAGAAAAAAAG+GGG - tig0044869:4537-4556 Msa1465080:intergenic 20.0%
!!! TAAAACTTAATTTTCCTATC+AGG + tig0044869:4650-4669 Msa1465080:intron 20.0%
!! TTTAATTATTCTATCCTGAT+AGG - tig0044869:4667-4686 Msa1465080:intergenic 20.0%
!! TTCTCATATAAATGCAAATA+AGG - tig0044869:4886-4905 Msa1465080:intergenic 20.0%
!! CTCAAAATCTTAAAACTATT+TGG + tig0044869:5099-5118 Msa1465080:intron 20.0%
!! ATATAATTTCTTGCCATTAT+CGG + tig0044869:5248-5267 Msa1465080:intron 20.0%
!!! TTTCTTTTTTCTCTCAATAA+AGG - tig0044869:5470-5489 Msa1465080:intergenic 20.0%
!! TACATAAAGAAAATCAAATC+TGG - tig0044869:5589-5608 Msa1465080:intergenic 20.0%
!! CTTTATGTATGAAATTATCA+AGG + tig0044869:5600-5619 Msa1465080:intron 20.0%
!! ATTTATATGTTTCCAAATGT+AGG + tig0044869:5641-5660 Msa1465080:intron 20.0%
!! TATGTATATTATAACGCTTA+CGG - tig0044869:5786-5805 Msa1465080:intergenic 20.0%
!! ACATAAATCTTGGTATTTAT+GGG + tig0044869:5920-5939 Msa1465080:three_prime_UTR 20.0%
!!! CTTTTTTTCCCTATTATCAA+TGG + tig0044869:4553-4572 Msa1465080:intron 25.0%
!! AATCAGATCCATTGATAATA+GGG - tig0044869:4564-4583 Msa1465080:intergenic 25.0%
! ATTCTCGTATGCTAATTTAT+TGG + tig0044869:4690-4709 Msa1465080:intron 25.0%
!!! TATGCTAATTTATTGGTTTG+TGG + tig0044869:4697-4716 Msa1465080:intron 25.0%
!!! ATAAAGCCCTTTTAAGTTTA+TGG + tig0044869:4805-4824 Msa1465080:intron 25.0%
!!! TAAAGCCCTTTTAAGTTTAT+GGG + tig0044869:4806-4825 Msa1465080:intron 25.0%
! TTGTACCCATAAACTTAAAA+GGG - tig0044869:4814-4833 Msa1465080:intergenic 25.0%
! TTTGTACCCATAAACTTAAA+AGG - tig0044869:4815-4834 Msa1465080:intergenic 25.0%
! AAATTATAGTGAAGTTAGAG+AGG + tig0044869:4832-4851 Msa1465080:intron 25.0%
! AATTATAGTGAAGTTAGAGA+GGG + tig0044869:4833-4852 Msa1465080:intron 25.0%
! AGAAATTACCTTCATTATGT+TGG - tig0044869:5158-5177 Msa1465080:intergenic 25.0%
! ATTTCATACAAGAAAACACA+TGG - tig0044869:5760-5779 Msa1465080:intergenic 25.0%
!!! TGTTTTCTTTTAGTTGAACA+TGG + tig0044869:5819-5838 Msa1465080:three_prime_UTR 25.0%
! GACATAAATCTTGGTATTTA+TGG + tig0044869:5919-5938 Msa1465080:three_prime_UTR 25.0%
! TTAAAATAAAGGCAAGGATT+GGG - tig0044869:5978-5997 Msa1465080:intergenic 25.0%
!! TTTAAAATAAAGGCAAGGAT+TGG - tig0044869:5979-5998 Msa1465080:intergenic 25.0%
!!! ATCCTTGCCTTTATTTTAAA+TGG + tig0044869:5979-5998 Msa1465080:three_prime_UTR 25.0%
!!! CTTTTTTTCCCTATTATCAA+TGG + tig0044869:4553-4572 Msa1465080:intron 25.0%
!! AATCAGATCCATTGATAATA+GGG - tig0044869:4564-4583 Msa1465080:intergenic 25.0%
! ATTCTCGTATGCTAATTTAT+TGG + tig0044869:4690-4709 Msa1465080:intron 25.0%
!!! TATGCTAATTTATTGGTTTG+TGG + tig0044869:4697-4716 Msa1465080:intron 25.0%
!!! ATAAAGCCCTTTTAAGTTTA+TGG + tig0044869:4805-4824 Msa1465080:intron 25.0%
!!! TAAAGCCCTTTTAAGTTTAT+GGG + tig0044869:4806-4825 Msa1465080:intron 25.0%
! TTGTACCCATAAACTTAAAA+GGG - tig0044869:4814-4833 Msa1465080:intergenic 25.0%
! TTTGTACCCATAAACTTAAA+AGG - tig0044869:4815-4834 Msa1465080:intergenic 25.0%
! AAATTATAGTGAAGTTAGAG+AGG + tig0044869:4832-4851 Msa1465080:intron 25.0%
! AATTATAGTGAAGTTAGAGA+GGG + tig0044869:4833-4852 Msa1465080:intron 25.0%
! AGAAATTACCTTCATTATGT+TGG - tig0044869:5158-5177 Msa1465080:intergenic 25.0%
! ATTTCATACAAGAAAACACA+TGG - tig0044869:5760-5779 Msa1465080:intergenic 25.0%
!!! TGTTTTCTTTTAGTTGAACA+TGG + tig0044869:5819-5838 Msa1465080:three_prime_UTR 25.0%
! GACATAAATCTTGGTATTTA+TGG + tig0044869:5919-5938 Msa1465080:three_prime_UTR 25.0%
! TTAAAATAAAGGCAAGGATT+GGG - tig0044869:5978-5997 Msa1465080:intergenic 25.0%
!! TTTAAAATAAAGGCAAGGAT+TGG - tig0044869:5979-5998 Msa1465080:intergenic 25.0%
ATACACATCAGAAAGAAAGA+AGG + tig0044869:4187-4206 Msa1465080:five_prime_UTR 30.0%
TACACATCAGAAAGAAAGAA+GGG + tig0044869:4188-4207 Msa1465080:five_prime_UTR 30.0%
!!! TTGAATTGGATCTGTTTTTG+TGG + tig0044869:4403-4422 Msa1465080:intron 30.0%
TCTTCTTCCAATTAACAAAC+AGG + tig0044869:4502-4521 Msa1465080:exon 30.0%
GAAAGAAAAAAAGGGGATTA+GGG - tig0044869:4530-4549 Msa1465080:intergenic 30.0%
AGAAAGAAAAAAAGGGGATT+AGG - tig0044869:4531-4550 Msa1465080:intergenic 30.0%
! CAATCAGATCCATTGATAAT+AGG - tig0044869:4565-4584 Msa1465080:intergenic 30.0%
AATTGCAATTGCATCTGTAA+TGG - tig0044869:4624-4643 Msa1465080:intergenic 30.0%
! TACAGATGCAATTGCAATTT+TGG + tig0044869:4625-4644 Msa1465080:intron 30.0%
! AAGTGTTAAGCTTAAGTTGT+TGG + tig0044869:4727-4746 Msa1465080:intron 30.0%
! AGTGTTAAGCTTAAGTTGTT+GGG + tig0044869:4728-4747 Msa1465080:intron 30.0%
TTCCAATATGTTTAGGCATA+GGG + tig0044869:4860-4879 Msa1465080:intron 30.0%
TGTAAGTGAGTGACTTAAAT+AGG - tig0044869:4949-4968 Msa1465080:intergenic 30.0%
AATCTCAGCACAAAAACAAA+TGG - tig0044869:5011-5030 Msa1465080:intergenic 30.0%
TTACACATCCAACATAATGA+AGG + tig0044869:5147-5166 Msa1465080:intron 30.0%
TGCAATATCTGCAATGATTT+GGG + tig0044869:5188-5207 Msa1465080:intron 30.0%
CTATATGATAGATCCGATAA+TGG - tig0044869:5264-5283 Msa1465080:intergenic 30.0%
TTATCGGATCTATCATATAG+TGG + tig0044869:5264-5283 Msa1465080:intron 30.0%
TGGTCTTTAACAACTTCTTT+AGG + tig0044869:5284-5303 Msa1465080:intron 30.0%
GTTGGATATTCTGAATCATA+GGG + tig0044869:5337-5356 Msa1465080:intron 30.0%
ATATTCTGAATCATAGGGAT+TGG + tig0044869:5342-5361 Msa1465080:intron 30.0%
!! TCTCCTTGATAATCTTCTTT+TGG + tig0044869:5374-5393 Msa1465080:intron 30.0%
TGACCAAAAGAAGATTATCA+AGG - tig0044869:5380-5399 Msa1465080:intergenic 30.0%
CAGATAAAACAACCTACATT+TGG - tig0044869:5656-5675 Msa1465080:intergenic 30.0%
TTGTGCTTTGACATAAATCT+TGG + tig0044869:5910-5929 Msa1465080:three_prime_UTR 30.0%
ATACACATCAGAAAGAAAGA+AGG + tig0044869:4187-4206 Msa1465080:five_prime_UTR 30.0%
TACACATCAGAAAGAAAGAA+GGG + tig0044869:4188-4207 Msa1465080:five_prime_UTR 30.0%
!!! TTGAATTGGATCTGTTTTTG+TGG + tig0044869:4403-4422 Msa1465080:intron 30.0%
TCTTCTTCCAATTAACAAAC+AGG + tig0044869:4502-4521 Msa1465080:exon 30.0%
GAAAGAAAAAAAGGGGATTA+GGG - tig0044869:4530-4549 Msa1465080:intergenic 30.0%
AGAAAGAAAAAAAGGGGATT+AGG - tig0044869:4531-4550 Msa1465080:intergenic 30.0%
! CAATCAGATCCATTGATAAT+AGG - tig0044869:4565-4584 Msa1465080:intergenic 30.0%
AATTGCAATTGCATCTGTAA+TGG - tig0044869:4624-4643 Msa1465080:intergenic 30.0%
! TACAGATGCAATTGCAATTT+TGG + tig0044869:4625-4644 Msa1465080:intron 30.0%
! AAGTGTTAAGCTTAAGTTGT+TGG + tig0044869:4727-4746 Msa1465080:intron 30.0%
! AGTGTTAAGCTTAAGTTGTT+GGG + tig0044869:4728-4747 Msa1465080:intron 30.0%
TTCCAATATGTTTAGGCATA+GGG + tig0044869:4860-4879 Msa1465080:intron 30.0%
TGTAAGTGAGTGACTTAAAT+AGG - tig0044869:4949-4968 Msa1465080:intergenic 30.0%
AATCTCAGCACAAAAACAAA+TGG - tig0044869:5011-5030 Msa1465080:intergenic 30.0%
TTACACATCCAACATAATGA+AGG + tig0044869:5147-5166 Msa1465080:intron 30.0%
TGCAATATCTGCAATGATTT+GGG + tig0044869:5188-5207 Msa1465080:intron 30.0%
CTATATGATAGATCCGATAA+TGG - tig0044869:5264-5283 Msa1465080:intergenic 30.0%
TTATCGGATCTATCATATAG+TGG + tig0044869:5264-5283 Msa1465080:intron 30.0%
TGGTCTTTAACAACTTCTTT+AGG + tig0044869:5284-5303 Msa1465080:intron 30.0%
GTTGGATATTCTGAATCATA+GGG + tig0044869:5337-5356 Msa1465080:intron 30.0%
ATATTCTGAATCATAGGGAT+TGG + tig0044869:5342-5361 Msa1465080:intron 30.0%
!! TCTCCTTGATAATCTTCTTT+TGG + tig0044869:5374-5393 Msa1465080:intron 30.0%
TGACCAAAAGAAGATTATCA+AGG - tig0044869:5380-5399 Msa1465080:intergenic 30.0%
CAGATAAAACAACCTACATT+TGG - tig0044869:5656-5675 Msa1465080:intergenic 30.0%
TTGTGCTTTGACATAAATCT+TGG + tig0044869:5910-5929 Msa1465080:three_prime_UTR 30.0%
TTGGAAGCTATGTTACCTTT+GGG + tig0044869:4243-4262 Msa1465080:CDS 35.0%
! TTACCTTTGGGAATAATTGC+TGG + tig0044869:4255-4274 Msa1465080:CDS 35.0%
ATTCCAGCAATTATTCCCAA+AGG - tig0044869:4261-4280 Msa1465080:intergenic 35.0%
! TAGGGTACCTGTTTGTTAAT+TGG - tig0044869:4512-4531 Msa1465080:intergenic 35.0%
TCTGATTGTCAACTCTATAG+CGG + tig0044869:4577-4596 Msa1465080:intron 35.0%
!! GCTAATTTATTGGTTTGTGG+AGG + tig0044869:4700-4719 Msa1465080:intron 35.0%
CTTCCAATATGTTTAGGCAT+AGG + tig0044869:4859-4878 Msa1465080:intron 35.0%
!!! GTGGTTTGTCATTTTTGCAA+TGG - tig0044869:4927-4946 Msa1465080:intergenic 35.0%
AAGTGAGTGACTTAAATAGG+TGG - tig0044869:4946-4965 Msa1465080:intergenic 35.0%
!! GATCCTTTGAGCTTTAAGTA+TGG + tig0044869:4972-4991 Msa1465080:intron 35.0%
TGTCCATACTTAAAGCTCAA+AGG - tig0044869:4978-4997 Msa1465080:intergenic 35.0%
GTGCAATATCTGCAATGATT+TGG + tig0044869:5187-5206 Msa1465080:intron 35.0%
GCAATATCTGCAATGATTTG+GGG + tig0044869:5189-5208 Msa1465080:intron 35.0%
!! CAACTTCTTTAGGATGCTAA+TGG + tig0044869:5294-5313 Msa1465080:intron 35.0%
GATGCTAATGGTTATTCAGA+GGG + tig0044869:5306-5325 Msa1465080:intron 35.0%
CGTTGGATATTCTGAATCAT+AGG + tig0044869:5336-5355 Msa1465080:intron 35.0%
! GATAATCTTCTTTTGGTCAG+TGG + tig0044869:5381-5400 Msa1465080:intron 35.0%
! TTTTGGTCAGTGGTTTCATT+AGG + tig0044869:5391-5410 Msa1465080:intron 35.0%
!! TTGCAATTTTGACGACTACA+AGG + tig0044869:5494-5513 Msa1465080:intron 35.0%
ACGACTACAAGGACAATATT+AGG + tig0044869:5505-5524 Msa1465080:intron 35.0%
TTGGAAGCTATGTTACCTTT+GGG + tig0044869:4243-4262 Msa1465080:CDS 35.0%
! TTACCTTTGGGAATAATTGC+TGG + tig0044869:4255-4274 Msa1465080:CDS 35.0%
ATTCCAGCAATTATTCCCAA+AGG - tig0044869:4261-4280 Msa1465080:intergenic 35.0%
! TAGGGTACCTGTTTGTTAAT+TGG - tig0044869:4512-4531 Msa1465080:intergenic 35.0%
TCTGATTGTCAACTCTATAG+CGG + tig0044869:4577-4596 Msa1465080:intron 35.0%
!! GCTAATTTATTGGTTTGTGG+AGG + tig0044869:4700-4719 Msa1465080:intron 35.0%
CTTCCAATATGTTTAGGCAT+AGG + tig0044869:4859-4878 Msa1465080:intron 35.0%
!!! GTGGTTTGTCATTTTTGCAA+TGG - tig0044869:4927-4946 Msa1465080:intergenic 35.0%
AAGTGAGTGACTTAAATAGG+TGG - tig0044869:4946-4965 Msa1465080:intergenic 35.0%
!! GATCCTTTGAGCTTTAAGTA+TGG + tig0044869:4972-4991 Msa1465080:intron 35.0%
TGTCCATACTTAAAGCTCAA+AGG - tig0044869:4978-4997 Msa1465080:intergenic 35.0%
GTGCAATATCTGCAATGATT+TGG + tig0044869:5187-5206 Msa1465080:intron 35.0%
GCAATATCTGCAATGATTTG+GGG + tig0044869:5189-5208 Msa1465080:intron 35.0%
!! CAACTTCTTTAGGATGCTAA+TGG + tig0044869:5294-5313 Msa1465080:intron 35.0%
GATGCTAATGGTTATTCAGA+GGG + tig0044869:5306-5325 Msa1465080:intron 35.0%
CGTTGGATATTCTGAATCAT+AGG + tig0044869:5336-5355 Msa1465080:intron 35.0%
! GATAATCTTCTTTTGGTCAG+TGG + tig0044869:5381-5400 Msa1465080:intron 35.0%
! TTTTGGTCAGTGGTTTCATT+AGG + tig0044869:5391-5410 Msa1465080:intron 35.0%
!! TTGCAATTTTGACGACTACA+AGG + tig0044869:5494-5513 Msa1465080:intron 35.0%
ACGACTACAAGGACAATATT+AGG + tig0044869:5505-5524 Msa1465080:intron 35.0%
GGAATTGAAGAAGAGAGAGA+TGG + tig0044869:4209-4228 Msa1465080:exon 40.0%
GTTGGAAGCTATGTTACCTT+TGG + tig0044869:4242-4261 Msa1465080:CDS 40.0%
TGCTGGAATGCTTTGTGTTA+TGG + tig0044869:4272-4291 Msa1465080:CDS 40.0%
GCTGGAATGCTTTGTGTTAT+GGG + tig0044869:4273-4292 Msa1465080:CDS 40.0%
AAATCATTGCCGATGTGCTT+AGG - tig0044869:4433-4452 Msa1465080:intergenic 40.0%
GGGAGACTTCCAATATGTTT+AGG + tig0044869:4853-4872 Msa1465080:intron 40.0%
AATGTATAGACCACCTAACC+TGG + tig0044869:5062-5081 Msa1465080:intron 40.0%
ATGTATAGACCACCTAACCT+GGG + tig0044869:5063-5082 Msa1465080:intron 40.0%
GGATGCTAATGGTTATTCAG+AGG + tig0044869:5305-5324 Msa1465080:intron 40.0%
! ATTCAGAGGGTTTTCTTCGT+TGG + tig0044869:5319-5338 Msa1465080:intron 40.0%
GTGGTTTCATTAGGAGGATT+AGG + tig0044869:5400-5419 Msa1465080:intron 40.0%
GGAATTGAAGAAGAGAGAGA+TGG + tig0044869:4209-4228 Msa1465080:exon 40.0%
GTTGGAAGCTATGTTACCTT+TGG + tig0044869:4242-4261 Msa1465080:CDS 40.0%
TGCTGGAATGCTTTGTGTTA+TGG + tig0044869:4272-4291 Msa1465080:CDS 40.0%
GCTGGAATGCTTTGTGTTAT+GGG + tig0044869:4273-4292 Msa1465080:CDS 40.0%
AAATCATTGCCGATGTGCTT+AGG - tig0044869:4433-4452 Msa1465080:intergenic 40.0%
GGGAGACTTCCAATATGTTT+AGG + tig0044869:4853-4872 Msa1465080:intron 40.0%
AATGTATAGACCACCTAACC+TGG + tig0044869:5062-5081 Msa1465080:intron 40.0%
ATGTATAGACCACCTAACCT+GGG + tig0044869:5063-5082 Msa1465080:intron 40.0%
GGATGCTAATGGTTATTCAG+AGG + tig0044869:5305-5324 Msa1465080:intron 40.0%
! ATTCAGAGGGTTTTCTTCGT+TGG + tig0044869:5319-5338 Msa1465080:intron 40.0%
GTGGTTTCATTAGGAGGATT+AGG + tig0044869:5400-5419 Msa1465080:intron 40.0%
!! TGTGGTTAGCCTAAGCACAT+CGG + tig0044869:4421-4440 Msa1465080:intron 45.0%
AGCACATCGGCAATGATTTG+TGG + tig0044869:4434-4453 Msa1465080:CDS 45.0%
! GCACATCGGCAATGATTTGT+GGG + tig0044869:4435-4454 Msa1465080:CDS 45.0%
CTGTAATGGCAACGAGAGTA+TGG - tig0044869:4610-4629 Msa1465080:intergenic 45.0%
GGCCCTATGCCTAAACATAT+TGG - tig0044869:4865-4884 Msa1465080:intergenic 45.0%
TAGTTAGAGCTTCCCAGGTT+AGG - tig0044869:5078-5097 Msa1465080:intergenic 45.0%
TGAGATAGTTAGAGCTTCCC+AGG - tig0044869:5083-5102 Msa1465080:intergenic 45.0%
! CTGCAATGATTTGGGGTCTA+TGG + tig0044869:5196-5215 Msa1465080:intron 45.0%
! TCTGAATCATAGGGATTGGC+AGG + tig0044869:5346-5365 Msa1465080:intron 45.0%
TGGTCAGTGGTTTCATTAGG+AGG + tig0044869:5394-5413 Msa1465080:intron 45.0%
! TGTTTTATCTGCGTGCGTGA+AGG + tig0044869:5665-5684 Msa1465080:three_prime_UTR 45.0%
! GTTTTATCTGCGTGCGTGAA+GGG + tig0044869:5666-5685 Msa1465080:three_prime_UTR 45.0%
AGCAATCTACTCTGCTTCCA+TGG - tig0044869:5725-5744 Msa1465080:intergenic 45.0%
AAGGCAAGGATTGGGATTAC+AGG - tig0044869:5970-5989 Msa1465080:intergenic 45.0%
!! TGTGGTTAGCCTAAGCACAT+CGG + tig0044869:4421-4440 Msa1465080:intron 45.0%
AGCACATCGGCAATGATTTG+TGG + tig0044869:4434-4453 Msa1465080:CDS 45.0%
! GCACATCGGCAATGATTTGT+GGG + tig0044869:4435-4454 Msa1465080:CDS 45.0%
CTGTAATGGCAACGAGAGTA+TGG - tig0044869:4610-4629 Msa1465080:intergenic 45.0%
GGCCCTATGCCTAAACATAT+TGG - tig0044869:4865-4884 Msa1465080:intergenic 45.0%
TAGTTAGAGCTTCCCAGGTT+AGG - tig0044869:5078-5097 Msa1465080:intergenic 45.0%
TGAGATAGTTAGAGCTTCCC+AGG - tig0044869:5083-5102 Msa1465080:intergenic 45.0%
! CTGCAATGATTTGGGGTCTA+TGG + tig0044869:5196-5215 Msa1465080:intron 45.0%
! TCTGAATCATAGGGATTGGC+AGG + tig0044869:5346-5365 Msa1465080:intron 45.0%
TGGTCAGTGGTTTCATTAGG+AGG + tig0044869:5394-5413 Msa1465080:intron 45.0%
! TGTTTTATCTGCGTGCGTGA+AGG + tig0044869:5665-5684 Msa1465080:three_prime_UTR 45.0%
! GTTTTATCTGCGTGCGTGAA+GGG + tig0044869:5666-5685 Msa1465080:three_prime_UTR 45.0%
AGCAATCTACTCTGCTTCCA+TGG - tig0044869:5725-5744 Msa1465080:intergenic 45.0%
AAGGCAAGGATTGGGATTAC+AGG - tig0044869:5970-5989 Msa1465080:intergenic 45.0%
AGAGAGAGATGGCGTTGCAT+TGG + tig0044869:4220-4239 Msa1465080:exon 50.0%
! AGAGATGGCGTTGCATTGGT+TGG + tig0044869:4224-4243 Msa1465080:exon 50.0%
TACATCCACAGAGCTGCTCA+CGG + tig0044869:4309-4328 Msa1465080:CDS 50.0%
CTTCTTGTCCCTACGTTCCA+TGG - tig0044869:4467-4486 Msa1465080:intergenic 50.0%
TTAGAGCTTCCCAGGTTAGG+TGG - tig0044869:5075-5094 Msa1465080:intergenic 50.0%
AGAGAGAGATGGCGTTGCAT+TGG + tig0044869:4220-4239 Msa1465080:exon 50.0%
! AGAGATGGCGTTGCATTGGT+TGG + tig0044869:4224-4243 Msa1465080:exon 50.0%
TACATCCACAGAGCTGCTCA+CGG + tig0044869:4309-4328 Msa1465080:CDS 50.0%
CTTCTTGTCCCTACGTTCCA+TGG - tig0044869:4467-4486 Msa1465080:intergenic 50.0%
TTAGAGCTTCCCAGGTTAGG+TGG - tig0044869:5075-5094 Msa1465080:intergenic 50.0%
! CGGCAATGATTTGTGGGACG+TGG + tig0044869:4441-4460 Msa1465080:CDS 55.0%
! TGATTTGTGGGACGTGGCCA+TGG + tig0044869:4447-4466 Msa1465080:CDS 55.0%
GTTGCTCTCCAGCTGTTCCA+TGG + tig0044869:5705-5724 Msa1465080:three_prime_UTR 55.0%
CTCTGCTTCCATGGAACAGC+TGG - tig0044869:5716-5735 Msa1465080:intergenic 55.0%
! CGGCAATGATTTGTGGGACG+TGG + tig0044869:4441-4460 Msa1465080:CDS 55.0%
! TGATTTGTGGGACGTGGCCA+TGG + tig0044869:4447-4466 Msa1465080:CDS 55.0%
GTTGCTCTCCAGCTGTTCCA+TGG + tig0044869:5705-5724 Msa1465080:three_prime_UTR 55.0%
CTCTGCTTCCATGGAACAGC+TGG - tig0044869:5716-5735 Msa1465080:intergenic 55.0%
GGACGTGGCCATGGAACGTA+GGG + tig0044869:4456-4475 Msa1465080:CDS 60.0%
GGACGTGGCCATGGAACGTA+GGG + tig0044869:4456-4475 Msa1465080:CDS 60.0%
CTCGTCCGTGAGCAGCTCTG+TGG - tig0044869:4317-4336 Msa1465080:intergenic 65.0%
GGGACGTGGCCATGGAACGT+AGG + tig0044869:4455-4474 Msa1465080:CDS 65.0%
CTCGTCCGTGAGCAGCTCTG+TGG - tig0044869:4317-4336 Msa1465080:intergenic 65.0%
GGGACGTGGCCATGGAACGT+AGG + tig0044869:4455-4474 Msa1465080:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0044869 gene 4172 6000 4172 ID=Msa1465080;Name=Msa1465080
tig0044869 mRNA 4172 6000 4172 ID=Msa1465080-mRNA-1;Parent=Msa1465080;Name=Msa1465080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=56|1|1|1|0.5|0.33|3|345|64
tig0044869 exon 4172 4335 4172 ID=Msa1465080-mRNA-1:exon:24677;Parent=Msa1465080-mRNA-1
tig0044869 exon 4430 4523 4430 ID=Msa1465080-mRNA-1:exon:24678;Parent=Msa1465080-mRNA-1
tig0044869 exon 5663 6000 5663 ID=Msa1465080-mRNA-1:exon:24679;Parent=Msa1465080-mRNA-1
tig0044869 five_prime_UTR 4172 4227 4172 ID=Msa1465080-mRNA-1:five_prime_utr;Parent=Msa1465080-mRNA-1
tig0044869 CDS 4228 4335 4228 ID=Msa1465080-mRNA-1:cds;Parent=Msa1465080-mRNA-1
tig0044869 CDS 4430 4516 4430 ID=Msa1465080-mRNA-1:cds;Parent=Msa1465080-mRNA-1
tig0044869 three_prime_UTR 4517 4523 4517 ID=Msa1465080-mRNA-1:three_prime_utr;Parent=Msa1465080-mRNA-1
tig0044869 three_prime_UTR 5663 6000 5663 ID=Msa1465080-mRNA-1:three_prime_utr;Parent=Msa1465080-mRNA-1
Gene Sequence

>Msa1465080

ATGGCGTTGCATTGGTTGGAAGCTATGTTACCTTTGGGAATAATTGCTGGAATGCTTTGTGTTATGGGTAACGCTCAGTATTACATCCACAGAGCTGCTCACGGACGACCTAAGCACATCGGCAATGATTTGTGGGACGTGGCCATGGAACGTAGGGACAAGAAGCTCGTCGATCAAGCTTCTTCTTCCAATTAA

Protein sequence

>Msa1465080

MALHWLEAMLPLGIIAGMLCVMGNAQYYIHRAAHGRPKHIGNDLWDVAMERRDKKLVDQASSSN*