AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1132860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 125 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGTGCTTATCATGATTT+TGG 0.160053 7_3:-85697875 None:intergenic
TCCAATTCTTCCATAGTTTC+TGG 0.164945 7_3:-85697089 None:intergenic
CAACCATGACTTACTAATTT+TGG 0.169811 7_3:-85697012 None:intergenic
TGGATGTTCAATTAATTTAT+TGG 0.196351 7_3:-85696955 None:intergenic
TAATTGTTTAATAAGTTTAT+TGG 0.212114 7_3:+85697685 Msa1132860:three_prime_UTR
CATGATAAGGCAGCGATTTA+AGG 0.214236 7_3:-85697235 None:intergenic
CTTACAAAAGGCACGGAAAT+TGG 0.230251 7_3:+85697412 Msa1132860:three_prime_UTR
AGCTTGTCTTAGGGCCTGTT+TGG 0.288788 7_3:-85697922 None:intergenic
ATTGGCAAACAATTTGTCTA+TGG 0.294301 7_3:-85696937 None:intergenic
ATGAGGCCTGAGTTATTTAC+AGG 0.309434 7_3:+85697773 Msa1132860:three_prime_UTR
TTCTTCAACGGAAGTGGATT+GGG 0.319925 7_3:-85695529 None:intergenic
TCCAGAAACTATGGAAGAAT+TGG 0.324623 7_3:+85697088 Msa1132860:three_prime_UTR
AAGGCTTGCACGAGGGGTGC+TGG 0.344303 7_3:+85697538 Msa1132860:three_prime_UTR
CTCTTCTTGCATCGTCGATC+CGG 0.348391 7_3:-85697052 None:intergenic
CCTGCCAGCTGTGCCTGCTC+AGG 0.364956 7_3:+85697469 Msa1132860:three_prime_UTR
TTTAGCTGTTTCAACATTCA+AGG 0.375145 7_3:-85696853 None:intergenic
GGCACAGCTGGCAGGAGCAC+TGG 0.386005 7_3:-85697461 None:intergenic
GTCTTAGGGCCTGTTTGGAT+TGG 0.391712 7_3:-85697917 None:intergenic
TTCAACTCAAGTGGACTTCA+TGG 0.391784 7_3:+85697585 Msa1132860:three_prime_UTR
CTTGGCGTTAATCAACCCTT+GGG 0.392019 7_3:+85697637 Msa1132860:three_prime_UTR
TGTGCCTGCTCAGGTTCTCT+TGG 0.392759 7_3:+85697478 Msa1132860:three_prime_UTR
CATAGTAGATACCGTGTTCT+CGG 0.411266 7_3:-85697120 None:intergenic
TTTAACGATTAGCCCATGTT+TGG 0.415198 7_3:-85697303 None:intergenic
AGCACCCCTCGTGCAAGCCT+TGG 0.419292 7_3:-85697536 None:intergenic
GATCATGCAGCCTCACATAT+TGG 0.419523 7_3:+85697188 Msa1132860:three_prime_UTR
CCTTGGCGTTAATCAACCCT+TGG 0.423068 7_3:+85697636 Msa1132860:three_prime_UTR
ACATGGGCTAATCGTTAAAC+AGG 0.424852 7_3:+85697307 Msa1132860:three_prime_UTR
AAGGCGCATAAGGCCAATCC+TGG 0.426108 7_3:-85696898 None:intergenic
CTTCTTCAACGGAAGTGGAT+TGG 0.429621 7_3:-85695530 None:intergenic
AATGCAGCTTTCCGCATAGA+TGG 0.432684 7_3:-85696819 None:intergenic
CACCGACATTCCAGAAACTA+TGG 0.432903 7_3:+85697079 Msa1132860:three_prime_UTR
TGCTGGGAATACCACCTTTG+TGG 0.435864 7_3:+85697555 Msa1132860:three_prime_UTR
CCTGAGCAGGCACAGCTGGC+AGG 0.442970 7_3:-85697469 None:intergenic
AGAACCTGAGCAGGCACAGC+TGG 0.443395 7_3:-85697473 None:intergenic
TGTTTGGATGCTATTGCCCT+TGG 0.447361 7_3:-85697287 None:intergenic
TCGCACTTGTTGTACGCAAT+GGG 0.447959 7_3:-85696754 None:intergenic
GCAAATAAACCAATCCAAAC+AGG 0.452043 7_3:+85697908 Msa1132860:three_prime_UTR
GTAGGCTTCTTCAACGGAAG+TGG 0.454599 7_3:-85695535 None:intergenic
GTTCTGCATCTAGTAACTTA+AGG 0.460780 7_3:+85696721 Msa1132860:three_prime_UTR
CAAAAGGCACGGAAATTGGC+TGG 0.465990 7_3:+85697416 Msa1132860:three_prime_UTR
TCTTCTTGCATCGTCGATCC+GGG 0.467160 7_3:-85697051 None:intergenic
TCTCTTGGATTCCCTACGCC+GGG 0.469407 7_3:+85697493 Msa1132860:three_prime_UTR
GCCACCACACAAGGCGCATA+AGG 0.473025 7_3:-85696908 None:intergenic
TCTCTGCAATCACACTTGAC+AGG 0.474712 7_3:-85696989 None:intergenic
AGGCTTGCACGAGGGGTGCT+GGG 0.476721 7_3:+85697539 Msa1132860:three_prime_UTR
CTAAACTAGTTTAGTTACCT+TGG 0.479176 7_3:+85697619 Msa1132860:three_prime_UTR
CTTGACAGGGCCAGCGCTGT+TGG 0.479492 7_3:-85696975 None:intergenic
ATCAAATTGCACCCGGCGTA+GGG 0.494435 7_3:-85697504 None:intergenic
GTTGCTTCAGATCCCAGGAT+TGG 0.495782 7_3:+85696885 Msa1132860:three_prime_UTR
TTCGCACTTGTTGTACGCAA+TGG 0.499355 7_3:-85696755 None:intergenic
CGGTTGTGACCAGCATGATA+AGG 0.504331 7_3:-85697248 None:intergenic
TTCTCTTGGATTCCCTACGC+CGG 0.506279 7_3:+85697492 Msa1132860:three_prime_UTR
TGGATGTTGCTTCAGATCCC+AGG 0.510117 7_3:+85696880 Msa1132860:three_prime_UTR
TTCCATAGTTTCTGGAATGT+CGG 0.513075 7_3:-85697081 None:intergenic
CGCAAGGATTTAATGAGTGG+TGG 0.516421 7_3:+85696699 Msa1132860:three_prime_UTR
TGTTGGCCTGTAAATAACTC+AGG 0.518520 7_3:-85697779 None:intergenic
GGAAGGTCAAGGAGAGAGAT+GGG 0.518846 7_3:+85697328 Msa1132860:three_prime_UTR
AAGCCTACTGTATGTTAGAT+CGG 0.520343 7_3:+85695550 Msa1132860:CDS
AAATCGCTGCCTTATCATGC+TGG 0.522737 7_3:+85697239 Msa1132860:three_prime_UTR
TGATCCAAGGCTTGCACGAG+GGG 0.526320 7_3:+85697532 Msa1132860:three_prime_UTR
AGCCAATGCACACTTACAAA+AGG 0.527197 7_3:+85697400 Msa1132860:three_prime_UTR
AGGAAGGTCAAGGAGAGAGA+TGG 0.527843 7_3:+85697327 Msa1132860:three_prime_UTR
TATGCGCCTTGTGTGGTGGC+AGG 0.528538 7_3:+85696911 Msa1132860:three_prime_UTR
AGATCGGAAACAAGTTGGAT+TGG 0.529168 7_3:+85695566 Msa1132860:CDS
TGGCTTCCTGCCACCACACA+AGG 0.536207 7_3:-85696917 None:intergenic
ATGTTAGATCGGAAACAAGT+TGG 0.537118 7_3:+85695561 Msa1132860:CDS
GCACTCAACTCAACTTCAGC+CGG 0.547160 7_3:+85695594 Msa1132860:CDS
CATCAAATTGCACCCGGCGT+AGG 0.548272 7_3:-85697505 None:intergenic
TTTCCGATCTAACATACAGT+AGG 0.549642 7_3:-85695553 None:intergenic
GGCTGGGAGTGTGCCTGCTG+AGG 0.550043 7_3:+85697433 Msa1132860:three_prime_UTR
AGGGCAATAGCATCCAAACA+TGG 0.560245 7_3:+85697290 Msa1132860:three_prime_UTR
AGCACTGGAATAGCCTCAGC+AGG 0.562374 7_3:-85697446 None:intergenic
TGAAACGATCTGTTGAAGCC+CGG 0.564950 7_3:+85697033 Msa1132860:three_prime_UTR
GAATCCAAGAGAACCTGAGC+AGG 0.565134 7_3:-85697482 None:intergenic
CGAAGTCATCAACATCATCC+AGG 0.569800 7_3:+85695646 Msa1132860:CDS
AATTTGATGTGTTTGATCCA+AGG 0.570713 7_3:+85697519 Msa1132860:three_prime_UTR
GTGTGAGGCAGTTTATGAAA+TGG 0.571413 7_3:+85697370 Msa1132860:three_prime_UTR
CTCTGCAATCACACTTGACA+GGG 0.573273 7_3:-85696988 None:intergenic
AGACCAAAATTAGTAAGTCA+TGG 0.574427 7_3:+85697009 Msa1132860:three_prime_UTR
TGACGGCCGACGAGCAACTC+CGG 0.577905 7_3:-85695613 None:intergenic
AGGTCAAGGAGAGAGATGGG+TGG 0.579175 7_3:+85697331 Msa1132860:three_prime_UTR
CATCTGTAGGCATTAACGCA+AGG 0.580140 7_3:+85696683 Msa1132860:intron
AGAATCTAGTTACTGTTACA+TGG 0.581932 7_3:-85697709 None:intergenic
CTGTTTCAACATTCAAGGCA+CGG 0.582336 7_3:-85696848 None:intergenic
AATTGAACATCCAACAGCGC+TGG 0.586583 7_3:+85696965 Msa1132860:three_prime_UTR
GCCTTATGCGCCTTGTGTGG+TGG 0.587629 7_3:+85696907 Msa1132860:three_prime_UTR
ATCGTTAAACAGGAAGGTCA+AGG 0.590180 7_3:+85697317 Msa1132860:three_prime_UTR
TAACGCAAGGATTTAATGAG+TGG 0.593914 7_3:+85696696 Msa1132860:exon
AAGTCCACTTGAGTTGAAGC+TGG 0.593973 7_3:-85697580 None:intergenic
TCAAGTGGACTTCATGGAGA+AGG 0.595439 7_3:+85697591 Msa1132860:three_prime_UTR
TTCTCGCGAGGGTCTGTGTG+AGG 0.600535 7_3:+85697355 Msa1132860:three_prime_UTR
CATACAGTAGGCTTCTTCAA+CGG 0.601152 7_3:-85695541 None:intergenic
AAAAGGCACGGAAATTGGCT+GGG 0.603375 7_3:+85697417 Msa1132860:three_prime_UTR
TCACATATTGGCAAGGCTAG+TGG 0.604755 7_3:+85697200 Msa1132860:three_prime_UTR
CAAACACATCAAATTGCACC+CGG 0.606483 7_3:-85697511 None:intergenic
GGTACCAGCTTCAACTCAAG+TGG 0.609461 7_3:+85697576 Msa1132860:three_prime_UTR
TTTGATCCAAGGCTTGCACG+AGG 0.609726 7_3:+85697530 Msa1132860:three_prime_UTR
CCAAGGGTTGATTAACGCCA+AGG 0.610632 7_3:-85697636 None:intergenic
CATAGTTTCTGGAATGTCGG+TGG 0.610747 7_3:-85697078 None:intergenic
CTTCAGCCGGAGTTGCTCGT+CGG 0.612012 7_3:+85695607 Msa1132860:CDS
GACTTCGTCAGTGTTTCTGA+CGG 0.616849 7_3:-85695630 None:intergenic
AGGCGCATAAGGCCAATCCT+GGG 0.619021 7_3:-85696897 None:intergenic
TGCAGCCTCACATATTGGCA+AGG 0.620209 7_3:+85697193 Msa1132860:three_prime_UTR
AGATGGGTGGATTCTCGCGA+GGG 0.621395 7_3:+85697344 Msa1132860:three_prime_UTR
TGGCGTTAATCAACCCTTGG+GGG 0.621962 7_3:+85697639 Msa1132860:three_prime_UTR
TTGTACTTGACACTTCAAGC+TGG 0.625478 7_3:+85697143 Msa1132860:three_prime_UTR
TTGATCCAAGGCTTGCACGA+GGG 0.629176 7_3:+85697531 Msa1132860:three_prime_UTR
TACTTGACACTTCAAGCTGG+CGG 0.631640 7_3:+85697146 Msa1132860:three_prime_UTR
GGGCAATAGCATCCAAACAT+GGG 0.631843 7_3:+85697291 Msa1132860:three_prime_UTR
ATGCACACTTACAAAAGGCA+CGG 0.641522 7_3:+85697405 Msa1132860:three_prime_UTR
TGTTGAAACAGCTAAAGCGA+TGG 0.649208 7_3:+85696860 Msa1132860:three_prime_UTR
GATCGACGATGCAAGAAGAG+AGG 0.649326 7_3:+85697055 Msa1132860:three_prime_UTR
TAGATGGAGGTAATTCGAGA+AGG 0.649396 7_3:-85696803 None:intergenic
GGGCTAATCGTTAAACAGGA+AGG 0.649412 7_3:+85697311 Msa1132860:three_prime_UTR
GGAGAAATATGCCGAGAACA+CGG 0.651307 7_3:+85697109 Msa1132860:three_prime_UTR
TTGGCGTTAATCAACCCTTG+GGG 0.651882 7_3:+85697638 Msa1132860:three_prime_UTR
CGAGAAGGCAGAGATAGTGA+TGG 0.655909 7_3:-85696788 None:intergenic
GAGATGGGTGGATTCTCGCG+AGG 0.657859 7_3:+85697343 Msa1132860:three_prime_UTR
GCAGCTTTCCGCATAGATGG+AGG 0.659881 7_3:-85696816 None:intergenic
TTGGCCTTATGCGCCTTGTG+TGG 0.661315 7_3:+85696904 Msa1132860:three_prime_UTR
GGCTGAAGTTGAGTTGAGTG+CGG 0.665617 7_3:-85695592 None:intergenic
ACTAGCCTTGCCAATATGTG+AGG 0.668625 7_3:-85697198 None:intergenic
TGAAGCTGGTACCACAAAGG+TGG 0.671108 7_3:-85697566 None:intergenic
AGTTGAAGCTGGTACCACAA+AGG 0.678191 7_3:-85697569 None:intergenic
TCGAATTACCTCCATCTATG+CGG 0.683768 7_3:+85696808 Msa1132860:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAACTTTTTTTTAAAATATA+TGG + chr7_3:85696636-85696655 Msa1132860:intron 10.0%
!!! TTTTTTTTAAAATATATGGT+AGG + chr7_3:85696640-85696659 Msa1132860:intron 10.0%
!!! TTTTTTTAAAATATATGGTA+GGG + chr7_3:85696641-85696660 Msa1132860:intron 10.0%
!! TAATTGTTTAATAAGTTTAT+TGG + chr7_3:85697685-85697704 Msa1132860:three_prime_UTR 10.0%
!!! CAACTTTTTTTTAAAATATA+TGG + chr7_3:85696636-85696655 Msa1132860:intron 10.0%
!!! TTTTTTTTAAAATATATGGT+AGG + chr7_3:85696640-85696659 Msa1132860:intron 10.0%
!!! TTTTTTTAAAATATATGGTA+GGG + chr7_3:85696641-85696660 Msa1132860:intron 10.0%
!! TAATTGTTTAATAAGTTTAT+TGG + chr7_3:85697685-85697704 Msa1132860:three_prime_UTR 10.0%
!!! TGAATTAGTTTATTTATACT+AGG + chr7_3:85696175-85696194 Msa1132860:intron 15.0%
!!! TAATTTCTAAAATTTGTGTT+AGG + chr7_3:85696280-85696299 Msa1132860:intron 15.0%
!!! AAAAAAAAGTTTTTAAAGAG+AGG - chr7_3:85696456-85696475 None:intergenic 15.0%
!!! ATAAAACTAACTGAAATTTT+TGG + chr7_3:85696492-85696511 Msa1132860:intron 15.0%
!!! TGAATTAGTTTATTTATACT+AGG + chr7_3:85696175-85696194 Msa1132860:intron 15.0%
!!! TAATTTCTAAAATTTGTGTT+AGG + chr7_3:85696280-85696299 Msa1132860:intron 15.0%
!!! AAAAAAAAGTTTTTAAAGAG+AGG - chr7_3:85696456-85696475 None:intergenic 15.0%
!!! ATAAAACTAACTGAAATTTT+TGG + chr7_3:85696492-85696511 Msa1132860:intron 15.0%
!! AAAGAAAAAAAAGTAAAACC+TGG - chr7_3:85695667-85695686 None:intergenic 20.0%
!!! ATTGTTTTTGTATAAGCTAT+AGG - chr7_3:85695863-85695882 None:intergenic 20.0%
!! AATTCCCAATTAGTATAATT+AGG + chr7_3:85695973-85695992 Msa1132860:intron 20.0%
!! AACACCTAATTATACTAATT+GGG - chr7_3:85695980-85695999 None:intergenic 20.0%
!! GTAATATAAAATGCTAGTTA+GGG - chr7_3:85696417-85696436 None:intergenic 20.0%
!! TGGATGTTCAATTAATTTAT+TGG - chr7_3:85696958-85696977 None:intergenic 20.0%
!!! CATTGTATCTTTTTAAAATG+AGG + chr7_3:85697756-85697775 Msa1132860:three_prime_UTR 20.0%
!! AAAGAAAAAAAAGTAAAACC+TGG - chr7_3:85695667-85695686 None:intergenic 20.0%
!!! ATTGTTTTTGTATAAGCTAT+AGG - chr7_3:85695863-85695882 None:intergenic 20.0%
!! AATTCCCAATTAGTATAATT+AGG + chr7_3:85695973-85695992 Msa1132860:intron 20.0%
!! AACACCTAATTATACTAATT+GGG - chr7_3:85695980-85695999 None:intergenic 20.0%
!! GTAATATAAAATGCTAGTTA+GGG - chr7_3:85696417-85696436 None:intergenic 20.0%
!! TGGATGTTCAATTAATTTAT+TGG - chr7_3:85696958-85696977 None:intergenic 20.0%
!!! CATTGTATCTTTTTAAAATG+AGG + chr7_3:85697756-85697775 Msa1132860:three_prime_UTR 20.0%
! AGCTTCTAATATATGCTAAA+GGG - chr7_3:85695952-85695971 None:intergenic 25.0%
! AAGCTTCTAATATATGCTAA+AGG - chr7_3:85695953-85695972 None:intergenic 25.0%
! CAACACCTAATTATACTAAT+TGG - chr7_3:85695981-85696000 None:intergenic 25.0%
! CAATTAGTATAATTAGGTGT+TGG + chr7_3:85695979-85695998 Msa1132860:intron 25.0%
! GGTAATATAAAATGCTAGTT+AGG - chr7_3:85696418-85696437 None:intergenic 25.0%
! AGTCGTTAAGTTTACAAATA+TGG + chr7_3:85696549-85696568 Msa1132860:intron 25.0%
! TTGGAATGTAAGAAAAATGT+CGG - chr7_3:85697271-85697290 None:intergenic 25.0%
!! ACATTTTTCTTACATTCCAA+GGG + chr7_3:85697271-85697290 Msa1132860:three_prime_UTR 25.0%
!! ATGCTCAAATACAATTTTGT+TGG - chr7_3:85697799-85697818 None:intergenic 25.0%
! AGCTTCTAATATATGCTAAA+GGG - chr7_3:85695952-85695971 None:intergenic 25.0%
! AAGCTTCTAATATATGCTAA+AGG - chr7_3:85695953-85695972 None:intergenic 25.0%
! CAACACCTAATTATACTAAT+TGG - chr7_3:85695981-85696000 None:intergenic 25.0%
! CAATTAGTATAATTAGGTGT+TGG + chr7_3:85695979-85695998 Msa1132860:intron 25.0%
! GGTAATATAAAATGCTAGTT+AGG - chr7_3:85696418-85696437 None:intergenic 25.0%
! AGTCGTTAAGTTTACAAATA+TGG + chr7_3:85696549-85696568 Msa1132860:intron 25.0%
! TTGGAATGTAAGAAAAATGT+CGG - chr7_3:85697271-85697290 None:intergenic 25.0%
!! ACATTTTTCTTACATTCCAA+GGG + chr7_3:85697271-85697290 Msa1132860:three_prime_UTR 25.0%
!! ATGCTCAAATACAATTTTGT+TGG - chr7_3:85697799-85697818 None:intergenic 25.0%
! AAACAACTGTCTTGCATTTT+CGG + chr7_3:85696120-85696139 Msa1132860:intron 30.0%
!! ATACTAGGTTACAGTTTTAG+TGG + chr7_3:85696190-85696209 Msa1132860:intron 30.0%
!! TACTAGGTTACAGTTTTAGT+GGG + chr7_3:85696191-85696210 Msa1132860:intron 30.0%
! AGTCCTCAAAGTAACTTTTA+GGG + chr7_3:85696224-85696243 Msa1132860:intron 30.0%
GTGTGTATAGTGAAATGTAT+TGG + chr7_3:85696613-85696632 Msa1132860:intron 30.0%
TTGATGTAACTTTCATCTGT+AGG + chr7_3:85696670-85696689 Msa1132860:intron 30.0%
! TTTAGCTGTTTCAACATTCA+AGG - chr7_3:85696856-85696875 None:intergenic 30.0%
ATTGGCAAACAATTTGTCTA+TGG - chr7_3:85696940-85696959 None:intergenic 30.0%
AGACCAAAATTAGTAAGTCA+TGG + chr7_3:85697009-85697028 Msa1132860:three_prime_UTR 30.0%
! CAACCATGACTTACTAATTT+TGG - chr7_3:85697015-85697034 None:intergenic 30.0%
! GACATTTTTCTTACATTCCA+AGG + chr7_3:85697270-85697289 Msa1132860:three_prime_UTR 30.0%
AATTTGATGTGTTTGATCCA+AGG + chr7_3:85697519-85697538 Msa1132860:three_prime_UTR 30.0%
! CTAAACTAGTTTAGTTACCT+TGG + chr7_3:85697619-85697638 Msa1132860:three_prime_UTR 30.0%
AGAATCTAGTTACTGTTACA+TGG - chr7_3:85697712-85697731 None:intergenic 30.0%
! ACAAGTGCTTATCATGATTT+TGG - chr7_3:85697878-85697897 None:intergenic 30.0%
! AAACAACTGTCTTGCATTTT+CGG + chr7_3:85696120-85696139 Msa1132860:intron 30.0%
!! ATACTAGGTTACAGTTTTAG+TGG + chr7_3:85696190-85696209 Msa1132860:intron 30.0%
!! TACTAGGTTACAGTTTTAGT+GGG + chr7_3:85696191-85696210 Msa1132860:intron 30.0%
! AGTCCTCAAAGTAACTTTTA+GGG + chr7_3:85696224-85696243 Msa1132860:intron 30.0%
GTGTGTATAGTGAAATGTAT+TGG + chr7_3:85696613-85696632 Msa1132860:intron 30.0%
TTGATGTAACTTTCATCTGT+AGG + chr7_3:85696670-85696689 Msa1132860:intron 30.0%
! TTTAGCTGTTTCAACATTCA+AGG - chr7_3:85696856-85696875 None:intergenic 30.0%
ATTGGCAAACAATTTGTCTA+TGG - chr7_3:85696940-85696959 None:intergenic 30.0%
AGACCAAAATTAGTAAGTCA+TGG + chr7_3:85697009-85697028 Msa1132860:three_prime_UTR 30.0%
! CAACCATGACTTACTAATTT+TGG - chr7_3:85697015-85697034 None:intergenic 30.0%
! GACATTTTTCTTACATTCCA+AGG + chr7_3:85697270-85697289 Msa1132860:three_prime_UTR 30.0%
AATTTGATGTGTTTGATCCA+AGG + chr7_3:85697519-85697538 Msa1132860:three_prime_UTR 30.0%
! CTAAACTAGTTTAGTTACCT+TGG + chr7_3:85697619-85697638 Msa1132860:three_prime_UTR 30.0%
AGAATCTAGTTACTGTTACA+TGG - chr7_3:85697712-85697731 None:intergenic 30.0%
! ACAAGTGCTTATCATGATTT+TGG - chr7_3:85697878-85697897 None:intergenic 30.0%
AAGCCTACTGTATGTTAGAT+CGG + chr7_3:85695550-85695569 Msa1132860:CDS 35.0%
TTTCCGATCTAACATACAGT+AGG - chr7_3:85695556-85695575 None:intergenic 35.0%
ATGTTAGATCGGAAACAAGT+TGG + chr7_3:85695561-85695580 Msa1132860:CDS 35.0%
TATGATCTACAGCGCAATTT+AGG - chr7_3:85695746-85695765 None:intergenic 35.0%
! CTAAAAGTTACTTTGAGGAC+TGG - chr7_3:85696225-85696244 None:intergenic 35.0%
! CAGTCCTCAAAGTAACTTTT+AGG + chr7_3:85696223-85696242 Msa1132860:intron 35.0%
! GTCCTCAAAGTAACTTTTAG+GGG + chr7_3:85696225-85696244 Msa1132860:intron 35.0%
TAACGCAAGGATTTAATGAG+TGG + chr7_3:85696696-85696715 Msa1132860:exon 35.0%
GTTCTGCATCTAGTAACTTA+AGG + chr7_3:85696721-85696740 Msa1132860:three_prime_UTR 35.0%
!! TTCCATAGTTTCTGGAATGT+CGG - chr7_3:85697084-85697103 None:intergenic 35.0%
TCCAGAAACTATGGAAGAAT+TGG + chr7_3:85697088-85697107 Msa1132860:three_prime_UTR 35.0%
TCCAATTCTTCCATAGTTTC+TGG - chr7_3:85697092-85697111 None:intergenic 35.0%
! TTTAACGATTAGCCCATGTT+TGG - chr7_3:85697306-85697325 None:intergenic 35.0%
AAAAATTTCAAGACCCCCAA+GGG - chr7_3:85697655-85697674 None:intergenic 35.0%
AAAAAATTTCAAGACCCCCA+AGG - chr7_3:85697656-85697675 None:intergenic 35.0%
AAGCCTACTGTATGTTAGAT+CGG + chr7_3:85695550-85695569 Msa1132860:CDS 35.0%
TTTCCGATCTAACATACAGT+AGG - chr7_3:85695556-85695575 None:intergenic 35.0%
ATGTTAGATCGGAAACAAGT+TGG + chr7_3:85695561-85695580 Msa1132860:CDS 35.0%
TATGATCTACAGCGCAATTT+AGG - chr7_3:85695746-85695765 None:intergenic 35.0%
! CTAAAAGTTACTTTGAGGAC+TGG - chr7_3:85696225-85696244 None:intergenic 35.0%
! CAGTCCTCAAAGTAACTTTT+AGG + chr7_3:85696223-85696242 Msa1132860:intron 35.0%
! GTCCTCAAAGTAACTTTTAG+GGG + chr7_3:85696225-85696244 Msa1132860:intron 35.0%
TAACGCAAGGATTTAATGAG+TGG + chr7_3:85696696-85696715 Msa1132860:exon 35.0%
GTTCTGCATCTAGTAACTTA+AGG + chr7_3:85696721-85696740 Msa1132860:three_prime_UTR 35.0%
!! TTCCATAGTTTCTGGAATGT+CGG - chr7_3:85697084-85697103 None:intergenic 35.0%
TCCAGAAACTATGGAAGAAT+TGG + chr7_3:85697088-85697107 Msa1132860:three_prime_UTR 35.0%
TCCAATTCTTCCATAGTTTC+TGG - chr7_3:85697092-85697111 None:intergenic 35.0%
! TTTAACGATTAGCCCATGTT+TGG - chr7_3:85697306-85697325 None:intergenic 35.0%
AAAAATTTCAAGACCCCCAA+GGG - chr7_3:85697655-85697674 None:intergenic 35.0%
AAAAAATTTCAAGACCCCCA+AGG - chr7_3:85697656-85697675 None:intergenic 35.0%
! TTCTTCAACGGAAGTGGATT+GGG - chr7_3:85695532-85695551 None:intergenic 40.0%
CATACAGTAGGCTTCTTCAA+CGG - chr7_3:85695544-85695563 None:intergenic 40.0%
! AGATCGGAAACAAGTTGGAT+TGG + chr7_3:85695566-85695585 Msa1132860:CDS 40.0%
! TTCGGCATTAGTTTCAGAGT+AGG + chr7_3:85696138-85696157 Msa1132860:intron 40.0%
! TGCCCCTAAAAGTTACTTTG+AGG - chr7_3:85696230-85696249 None:intergenic 40.0%
TAGATGGAGGTAATTCGAGA+AGG - chr7_3:85696806-85696825 None:intergenic 40.0%
TCGAATTACCTCCATCTATG+CGG + chr7_3:85696808-85696827 Msa1132860:three_prime_UTR 40.0%
CTGTTTCAACATTCAAGGCA+CGG - chr7_3:85696851-85696870 None:intergenic 40.0%
TGTTGAAACAGCTAAAGCGA+TGG + chr7_3:85696860-85696879 Msa1132860:three_prime_UTR 40.0%
CATAGTAGATACCGTGTTCT+CGG - chr7_3:85697123-85697142 None:intergenic 40.0%
TTGTACTTGACACTTCAAGC+TGG + chr7_3:85697143-85697162 Msa1132860:three_prime_UTR 40.0%
CATGATAAGGCAGCGATTTA+AGG - chr7_3:85697238-85697257 None:intergenic 40.0%
! ACATGGGCTAATCGTTAAAC+AGG + chr7_3:85697307-85697326 Msa1132860:three_prime_UTR 40.0%
ATCGTTAAACAGGAAGGTCA+AGG + chr7_3:85697317-85697336 Msa1132860:three_prime_UTR 40.0%
GTGTGAGGCAGTTTATGAAA+TGG + chr7_3:85697370-85697389 Msa1132860:three_prime_UTR 40.0%
AGCCAATGCACACTTACAAA+AGG + chr7_3:85697400-85697419 Msa1132860:three_prime_UTR 40.0%
! TGCCTTTTGTAAGTGTGCAT+TGG - chr7_3:85697405-85697424 None:intergenic 40.0%
ATGCACACTTACAAAAGGCA+CGG + chr7_3:85697405-85697424 Msa1132860:three_prime_UTR 40.0%
! CTTACAAAAGGCACGGAAAT+TGG + chr7_3:85697412-85697431 Msa1132860:three_prime_UTR 40.0%
CAAACACATCAAATTGCACC+CGG - chr7_3:85697514-85697533 None:intergenic 40.0%
! TTCAACTCAAGTGGACTTCA+TGG + chr7_3:85697585-85697604 Msa1132860:three_prime_UTR 40.0%
ATGAGGCCTGAGTTATTTAC+AGG + chr7_3:85697773-85697792 Msa1132860:three_prime_UTR 40.0%
! TGTTGGCCTGTAAATAACTC+AGG - chr7_3:85697782-85697801 None:intergenic 40.0%
! TTCTTCAACGGAAGTGGATT+GGG - chr7_3:85695532-85695551 None:intergenic 40.0%
CATACAGTAGGCTTCTTCAA+CGG - chr7_3:85695544-85695563 None:intergenic 40.0%
! AGATCGGAAACAAGTTGGAT+TGG + chr7_3:85695566-85695585 Msa1132860:CDS 40.0%
! TTCGGCATTAGTTTCAGAGT+AGG + chr7_3:85696138-85696157 Msa1132860:intron 40.0%
! TGCCCCTAAAAGTTACTTTG+AGG - chr7_3:85696230-85696249 None:intergenic 40.0%
TAGATGGAGGTAATTCGAGA+AGG - chr7_3:85696806-85696825 None:intergenic 40.0%
TCGAATTACCTCCATCTATG+CGG + chr7_3:85696808-85696827 Msa1132860:three_prime_UTR 40.0%
CTGTTTCAACATTCAAGGCA+CGG - chr7_3:85696851-85696870 None:intergenic 40.0%
TGTTGAAACAGCTAAAGCGA+TGG + chr7_3:85696860-85696879 Msa1132860:three_prime_UTR 40.0%
CATAGTAGATACCGTGTTCT+CGG - chr7_3:85697123-85697142 None:intergenic 40.0%
TTGTACTTGACACTTCAAGC+TGG + chr7_3:85697143-85697162 Msa1132860:three_prime_UTR 40.0%
CATGATAAGGCAGCGATTTA+AGG - chr7_3:85697238-85697257 None:intergenic 40.0%
! ACATGGGCTAATCGTTAAAC+AGG + chr7_3:85697307-85697326 Msa1132860:three_prime_UTR 40.0%
ATCGTTAAACAGGAAGGTCA+AGG + chr7_3:85697317-85697336 Msa1132860:three_prime_UTR 40.0%
GTGTGAGGCAGTTTATGAAA+TGG + chr7_3:85697370-85697389 Msa1132860:three_prime_UTR 40.0%
AGCCAATGCACACTTACAAA+AGG + chr7_3:85697400-85697419 Msa1132860:three_prime_UTR 40.0%
! TGCCTTTTGTAAGTGTGCAT+TGG - chr7_3:85697405-85697424 None:intergenic 40.0%
ATGCACACTTACAAAAGGCA+CGG + chr7_3:85697405-85697424 Msa1132860:three_prime_UTR 40.0%
! CTTACAAAAGGCACGGAAAT+TGG + chr7_3:85697412-85697431 Msa1132860:three_prime_UTR 40.0%
CAAACACATCAAATTGCACC+CGG - chr7_3:85697514-85697533 None:intergenic 40.0%
! TTCAACTCAAGTGGACTTCA+TGG + chr7_3:85697585-85697604 Msa1132860:three_prime_UTR 40.0%
ATGAGGCCTGAGTTATTTAC+AGG + chr7_3:85697773-85697792 Msa1132860:three_prime_UTR 40.0%
! TGTTGGCCTGTAAATAACTC+AGG - chr7_3:85697782-85697801 None:intergenic 40.0%
CTTCTTCAACGGAAGTGGAT+TGG - chr7_3:85695533-85695552 None:intergenic 45.0%
! GACTTCGTCAGTGTTTCTGA+CGG - chr7_3:85695633-85695652 None:intergenic 45.0%
CGAAGTCATCAACATCATCC+AGG + chr7_3:85695646-85695665 Msa1132860:CDS 45.0%
GAACGCGATGATACGATTTG+CGG + chr7_3:85695704-85695723 Msa1132860:intron 45.0%
ATCGCTATTGCGCGCTATAT+CGG + chr7_3:85695778-85695797 Msa1132860:intron 45.0%
AAAGAGAGGACTCACTGTGA+TGG - chr7_3:85696442-85696461 None:intergenic 45.0%
CATCTGTAGGCATTAACGCA+AGG + chr7_3:85696683-85696702 Msa1132860:intron 45.0%
CGCAAGGATTTAATGAGTGG+TGG + chr7_3:85696699-85696718 Msa1132860:three_prime_UTR 45.0%
!! TCGCACTTGTTGTACGCAAT+GGG - chr7_3:85696757-85696776 None:intergenic 45.0%
!! TTCGCACTTGTTGTACGCAA+TGG - chr7_3:85696758-85696777 None:intergenic 45.0%
AATGCAGCTTTCCGCATAGA+TGG - chr7_3:85696822-85696841 None:intergenic 45.0%
AATTGAACATCCAACAGCGC+TGG + chr7_3:85696965-85696984 Msa1132860:three_prime_UTR 45.0%
CTCTGCAATCACACTTGACA+GGG - chr7_3:85696991-85697010 None:intergenic 45.0%
TCTCTGCAATCACACTTGAC+AGG - chr7_3:85696992-85697011 None:intergenic 45.0%
TGAAACGATCTGTTGAAGCC+CGG + chr7_3:85697033-85697052 Msa1132860:three_prime_UTR 45.0%
!! CATAGTTTCTGGAATGTCGG+TGG - chr7_3:85697081-85697100 None:intergenic 45.0%
CACCGACATTCCAGAAACTA+TGG + chr7_3:85697079-85697098 Msa1132860:three_prime_UTR 45.0%
GGAGAAATATGCCGAGAACA+CGG + chr7_3:85697109-85697128 Msa1132860:three_prime_UTR 45.0%
TACTTGACACTTCAAGCTGG+CGG + chr7_3:85697146-85697165 Msa1132860:three_prime_UTR 45.0%
GATCATGCAGCCTCACATAT+TGG + chr7_3:85697188-85697207 Msa1132860:three_prime_UTR 45.0%
!! ACTAGCCTTGCCAATATGTG+AGG - chr7_3:85697201-85697220 None:intergenic 45.0%
TCACATATTGGCAAGGCTAG+TGG + chr7_3:85697200-85697219 Msa1132860:three_prime_UTR 45.0%
AAATCGCTGCCTTATCATGC+TGG + chr7_3:85697239-85697258 Msa1132860:three_prime_UTR 45.0%
TGTTTGGATGCTATTGCCCT+TGG - chr7_3:85697290-85697309 None:intergenic 45.0%
AGGGCAATAGCATCCAAACA+TGG + chr7_3:85697290-85697309 Msa1132860:three_prime_UTR 45.0%
GGGCAATAGCATCCAAACAT+GGG + chr7_3:85697291-85697310 Msa1132860:three_prime_UTR 45.0%
GGGCTAATCGTTAAACAGGA+AGG + chr7_3:85697311-85697330 Msa1132860:three_prime_UTR 45.0%
! AAAAGGCACGGAAATTGGCT+GGG + chr7_3:85697417-85697436 Msa1132860:three_prime_UTR 45.0%
AGTTGAAGCTGGTACCACAA+AGG - chr7_3:85697572-85697591 None:intergenic 45.0%
!! AAGTCCACTTGAGTTGAAGC+TGG - chr7_3:85697583-85697602 None:intergenic 45.0%
! TCAAGTGGACTTCATGGAGA+AGG + chr7_3:85697591-85697610 Msa1132860:three_prime_UTR 45.0%
CTTGGCGTTAATCAACCCTT+GGG + chr7_3:85697637-85697656 Msa1132860:three_prime_UTR 45.0%
TTGGCGTTAATCAACCCTTG+GGG + chr7_3:85697638-85697657 Msa1132860:three_prime_UTR 45.0%
CTTCTTCAACGGAAGTGGAT+TGG - chr7_3:85695533-85695552 None:intergenic 45.0%
! GACTTCGTCAGTGTTTCTGA+CGG - chr7_3:85695633-85695652 None:intergenic 45.0%
CGAAGTCATCAACATCATCC+AGG + chr7_3:85695646-85695665 Msa1132860:CDS 45.0%
GAACGCGATGATACGATTTG+CGG + chr7_3:85695704-85695723 Msa1132860:intron 45.0%
ATCGCTATTGCGCGCTATAT+CGG + chr7_3:85695778-85695797 Msa1132860:intron 45.0%
AAAGAGAGGACTCACTGTGA+TGG - chr7_3:85696442-85696461 None:intergenic 45.0%
CATCTGTAGGCATTAACGCA+AGG + chr7_3:85696683-85696702 Msa1132860:intron 45.0%
CGCAAGGATTTAATGAGTGG+TGG + chr7_3:85696699-85696718 Msa1132860:three_prime_UTR 45.0%
!! TCGCACTTGTTGTACGCAAT+GGG - chr7_3:85696757-85696776 None:intergenic 45.0%
!! TTCGCACTTGTTGTACGCAA+TGG - chr7_3:85696758-85696777 None:intergenic 45.0%
AATGCAGCTTTCCGCATAGA+TGG - chr7_3:85696822-85696841 None:intergenic 45.0%
AATTGAACATCCAACAGCGC+TGG + chr7_3:85696965-85696984 Msa1132860:three_prime_UTR 45.0%
CTCTGCAATCACACTTGACA+GGG - chr7_3:85696991-85697010 None:intergenic 45.0%
TCTCTGCAATCACACTTGAC+AGG - chr7_3:85696992-85697011 None:intergenic 45.0%
TGAAACGATCTGTTGAAGCC+CGG + chr7_3:85697033-85697052 Msa1132860:three_prime_UTR 45.0%
!! CATAGTTTCTGGAATGTCGG+TGG - chr7_3:85697081-85697100 None:intergenic 45.0%
CACCGACATTCCAGAAACTA+TGG + chr7_3:85697079-85697098 Msa1132860:three_prime_UTR 45.0%
GGAGAAATATGCCGAGAACA+CGG + chr7_3:85697109-85697128 Msa1132860:three_prime_UTR 45.0%
TACTTGACACTTCAAGCTGG+CGG + chr7_3:85697146-85697165 Msa1132860:three_prime_UTR 45.0%
GATCATGCAGCCTCACATAT+TGG + chr7_3:85697188-85697207 Msa1132860:three_prime_UTR 45.0%
!! ACTAGCCTTGCCAATATGTG+AGG - chr7_3:85697201-85697220 None:intergenic 45.0%
TCACATATTGGCAAGGCTAG+TGG + chr7_3:85697200-85697219 Msa1132860:three_prime_UTR 45.0%
AAATCGCTGCCTTATCATGC+TGG + chr7_3:85697239-85697258 Msa1132860:three_prime_UTR 45.0%
TGTTTGGATGCTATTGCCCT+TGG - chr7_3:85697290-85697309 None:intergenic 45.0%
AGGGCAATAGCATCCAAACA+TGG + chr7_3:85697290-85697309 Msa1132860:three_prime_UTR 45.0%
GGGCAATAGCATCCAAACAT+GGG + chr7_3:85697291-85697310 Msa1132860:three_prime_UTR 45.0%
GGGCTAATCGTTAAACAGGA+AGG + chr7_3:85697311-85697330 Msa1132860:three_prime_UTR 45.0%
! AAAAGGCACGGAAATTGGCT+GGG + chr7_3:85697417-85697436 Msa1132860:three_prime_UTR 45.0%
AGTTGAAGCTGGTACCACAA+AGG - chr7_3:85697572-85697591 None:intergenic 45.0%
!! AAGTCCACTTGAGTTGAAGC+TGG - chr7_3:85697583-85697602 None:intergenic 45.0%
! TCAAGTGGACTTCATGGAGA+AGG + chr7_3:85697591-85697610 Msa1132860:three_prime_UTR 45.0%
CTTGGCGTTAATCAACCCTT+GGG + chr7_3:85697637-85697656 Msa1132860:three_prime_UTR 45.0%
TTGGCGTTAATCAACCCTTG+GGG + chr7_3:85697638-85697657 Msa1132860:three_prime_UTR 45.0%
GTAGGCTTCTTCAACGGAAG+TGG - chr7_3:85695538-85695557 None:intergenic 50.0%
!! GGCTGAAGTTGAGTTGAGTG+CGG - chr7_3:85695595-85695614 None:intergenic 50.0%
GCACTCAACTCAACTTCAGC+CGG + chr7_3:85695594-85695613 Msa1132860:CDS 50.0%
CGAGAAGGCAGAGATAGTGA+TGG - chr7_3:85696791-85696810 None:intergenic 50.0%
! TGGATGTTGCTTCAGATCCC+AGG + chr7_3:85696880-85696899 Msa1132860:three_prime_UTR 50.0%
GTTGCTTCAGATCCCAGGAT+TGG + chr7_3:85696885-85696904 Msa1132860:three_prime_UTR 50.0%
TCTTCTTGCATCGTCGATCC+GGG - chr7_3:85697054-85697073 None:intergenic 50.0%
CTCTTCTTGCATCGTCGATC+CGG - chr7_3:85697055-85697074 None:intergenic 50.0%
GATCGACGATGCAAGAAGAG+AGG + chr7_3:85697055-85697074 Msa1132860:three_prime_UTR 50.0%
TGCAGCCTCACATATTGGCA+AGG + chr7_3:85697193-85697212 Msa1132860:three_prime_UTR 50.0%
CGGTTGTGACCAGCATGATA+AGG - chr7_3:85697251-85697270 None:intergenic 50.0%
AGGAAGGTCAAGGAGAGAGA+TGG + chr7_3:85697327-85697346 Msa1132860:three_prime_UTR 50.0%
GGAAGGTCAAGGAGAGAGAT+GGG + chr7_3:85697328-85697347 Msa1132860:three_prime_UTR 50.0%
! CAAAAGGCACGGAAATTGGC+TGG + chr7_3:85697416-85697435 Msa1132860:three_prime_UTR 50.0%
GAATCCAAGAGAACCTGAGC+AGG - chr7_3:85697485-85697504 None:intergenic 50.0%
TTCTCTTGGATTCCCTACGC+CGG + chr7_3:85697492-85697511 Msa1132860:three_prime_UTR 50.0%
ATCAAATTGCACCCGGCGTA+GGG - chr7_3:85697507-85697526 None:intergenic 50.0%
TTTGATCCAAGGCTTGCACG+AGG + chr7_3:85697530-85697549 Msa1132860:three_prime_UTR 50.0%
TTGATCCAAGGCTTGCACGA+GGG + chr7_3:85697531-85697550 Msa1132860:three_prime_UTR 50.0%
TGCTGGGAATACCACCTTTG+TGG + chr7_3:85697555-85697574 Msa1132860:three_prime_UTR 50.0%
TGAAGCTGGTACCACAAAGG+TGG - chr7_3:85697569-85697588 None:intergenic 50.0%
GGTACCAGCTTCAACTCAAG+TGG + chr7_3:85697576-85697595 Msa1132860:three_prime_UTR 50.0%
! CCAAGGGTTGATTAACGCCA+AGG - chr7_3:85697639-85697658 None:intergenic 50.0%
CCTTGGCGTTAATCAACCCT+TGG + chr7_3:85697636-85697655 Msa1132860:three_prime_UTR 50.0%
TGGCGTTAATCAACCCTTGG+GGG + chr7_3:85697639-85697658 Msa1132860:three_prime_UTR 50.0%
GTAGGCTTCTTCAACGGAAG+TGG - chr7_3:85695538-85695557 None:intergenic 50.0%
!! GGCTGAAGTTGAGTTGAGTG+CGG - chr7_3:85695595-85695614 None:intergenic 50.0%
GCACTCAACTCAACTTCAGC+CGG + chr7_3:85695594-85695613 Msa1132860:CDS 50.0%
CGAGAAGGCAGAGATAGTGA+TGG - chr7_3:85696791-85696810 None:intergenic 50.0%
! TGGATGTTGCTTCAGATCCC+AGG + chr7_3:85696880-85696899 Msa1132860:three_prime_UTR 50.0%
GTTGCTTCAGATCCCAGGAT+TGG + chr7_3:85696885-85696904 Msa1132860:three_prime_UTR 50.0%
TCTTCTTGCATCGTCGATCC+GGG - chr7_3:85697054-85697073 None:intergenic 50.0%
CTCTTCTTGCATCGTCGATC+CGG - chr7_3:85697055-85697074 None:intergenic 50.0%
GATCGACGATGCAAGAAGAG+AGG + chr7_3:85697055-85697074 Msa1132860:three_prime_UTR 50.0%
TGCAGCCTCACATATTGGCA+AGG + chr7_3:85697193-85697212 Msa1132860:three_prime_UTR 50.0%
CGGTTGTGACCAGCATGATA+AGG - chr7_3:85697251-85697270 None:intergenic 50.0%
AGGAAGGTCAAGGAGAGAGA+TGG + chr7_3:85697327-85697346 Msa1132860:three_prime_UTR 50.0%
GGAAGGTCAAGGAGAGAGAT+GGG + chr7_3:85697328-85697347 Msa1132860:three_prime_UTR 50.0%
! CAAAAGGCACGGAAATTGGC+TGG + chr7_3:85697416-85697435 Msa1132860:three_prime_UTR 50.0%
GAATCCAAGAGAACCTGAGC+AGG - chr7_3:85697485-85697504 None:intergenic 50.0%
TTCTCTTGGATTCCCTACGC+CGG + chr7_3:85697492-85697511 Msa1132860:three_prime_UTR 50.0%
ATCAAATTGCACCCGGCGTA+GGG - chr7_3:85697507-85697526 None:intergenic 50.0%
TTTGATCCAAGGCTTGCACG+AGG + chr7_3:85697530-85697549 Msa1132860:three_prime_UTR 50.0%
TTGATCCAAGGCTTGCACGA+GGG + chr7_3:85697531-85697550 Msa1132860:three_prime_UTR 50.0%
TGCTGGGAATACCACCTTTG+TGG + chr7_3:85697555-85697574 Msa1132860:three_prime_UTR 50.0%
TGAAGCTGGTACCACAAAGG+TGG - chr7_3:85697569-85697588 None:intergenic 50.0%
GGTACCAGCTTCAACTCAAG+TGG + chr7_3:85697576-85697595 Msa1132860:three_prime_UTR 50.0%
! CCAAGGGTTGATTAACGCCA+AGG - chr7_3:85697639-85697658 None:intergenic 50.0%
CCTTGGCGTTAATCAACCCT+TGG + chr7_3:85697636-85697655 Msa1132860:three_prime_UTR 50.0%
TGGCGTTAATCAACCCTTGG+GGG + chr7_3:85697639-85697658 Msa1132860:three_prime_UTR 50.0%
CGCGCAATAGCGATGCGAAA+TGG - chr7_3:85695772-85695791 None:intergenic 55.0%
GCGCGCTATATCGGCGAAAT+TGG + chr7_3:85695787-85695806 Msa1132860:intron 55.0%
GAGAGGACTCACTGTGATGG+AGG - chr7_3:85696439-85696458 None:intergenic 55.0%
GCAGCTTTCCGCATAGATGG+AGG - chr7_3:85696819-85696838 None:intergenic 55.0%
AGGCGCATAAGGCCAATCCT+GGG - chr7_3:85696900-85696919 None:intergenic 55.0%
AAGGCGCATAAGGCCAATCC+TGG - chr7_3:85696901-85696920 None:intergenic 55.0%
!! TTGGCCTTATGCGCCTTGTG+TGG + chr7_3:85696904-85696923 Msa1132860:three_prime_UTR 55.0%
AGGTCAAGGAGAGAGATGGG+TGG + chr7_3:85697331-85697350 Msa1132860:three_prime_UTR 55.0%
! AGATGGGTGGATTCTCGCGA+GGG + chr7_3:85697344-85697363 Msa1132860:three_prime_UTR 55.0%
! AGCACTGGAATAGCCTCAGC+AGG - chr7_3:85697449-85697468 None:intergenic 55.0%
TGTGCCTGCTCAGGTTCTCT+TGG + chr7_3:85697478-85697497 Msa1132860:three_prime_UTR 55.0%
TCTCTTGGATTCCCTACGCC+GGG + chr7_3:85697493-85697512 Msa1132860:three_prime_UTR 55.0%
CATCAAATTGCACCCGGCGT+AGG - chr7_3:85697508-85697527 None:intergenic 55.0%
TGATCCAAGGCTTGCACGAG+GGG + chr7_3:85697532-85697551 Msa1132860:three_prime_UTR 55.0%
CGCGCAATAGCGATGCGAAA+TGG - chr7_3:85695772-85695791 None:intergenic 55.0%
GCGCGCTATATCGGCGAAAT+TGG + chr7_3:85695787-85695806 Msa1132860:intron 55.0%
GAGAGGACTCACTGTGATGG+AGG - chr7_3:85696439-85696458 None:intergenic 55.0%
GCAGCTTTCCGCATAGATGG+AGG - chr7_3:85696819-85696838 None:intergenic 55.0%
AGGCGCATAAGGCCAATCCT+GGG - chr7_3:85696900-85696919 None:intergenic 55.0%
AAGGCGCATAAGGCCAATCC+TGG - chr7_3:85696901-85696920 None:intergenic 55.0%
!! TTGGCCTTATGCGCCTTGTG+TGG + chr7_3:85696904-85696923 Msa1132860:three_prime_UTR 55.0%
AGGTCAAGGAGAGAGATGGG+TGG + chr7_3:85697331-85697350 Msa1132860:three_prime_UTR 55.0%
! AGATGGGTGGATTCTCGCGA+GGG + chr7_3:85697344-85697363 Msa1132860:three_prime_UTR 55.0%
! AGCACTGGAATAGCCTCAGC+AGG - chr7_3:85697449-85697468 None:intergenic 55.0%
TGTGCCTGCTCAGGTTCTCT+TGG + chr7_3:85697478-85697497 Msa1132860:three_prime_UTR 55.0%
TCTCTTGGATTCCCTACGCC+GGG + chr7_3:85697493-85697512 Msa1132860:three_prime_UTR 55.0%
CATCAAATTGCACCCGGCGT+AGG - chr7_3:85697508-85697527 None:intergenic 55.0%
TGATCCAAGGCTTGCACGAG+GGG + chr7_3:85697532-85697551 Msa1132860:three_prime_UTR 55.0%
CTTCAGCCGGAGTTGCTCGT+CGG + chr7_3:85695607-85695626 Msa1132860:CDS 60.0%
GCCTTATGCGCCTTGTGTGG+TGG + chr7_3:85696907-85696926 Msa1132860:three_prime_UTR 60.0%
GCCACCACACAAGGCGCATA+AGG - chr7_3:85696911-85696930 None:intergenic 60.0%
TATGCGCCTTGTGTGGTGGC+AGG + chr7_3:85696911-85696930 Msa1132860:three_prime_UTR 60.0%
TGGCTTCCTGCCACCACACA+AGG - chr7_3:85696920-85696939 None:intergenic 60.0%
! GAGATGGGTGGATTCTCGCG+AGG + chr7_3:85697343-85697362 Msa1132860:three_prime_UTR 60.0%
TTCTCGCGAGGGTCTGTGTG+AGG + chr7_3:85697355-85697374 Msa1132860:three_prime_UTR 60.0%
AGAACCTGAGCAGGCACAGC+TGG - chr7_3:85697476-85697495 None:intergenic 60.0%
CTTCAGCCGGAGTTGCTCGT+CGG + chr7_3:85695607-85695626 Msa1132860:CDS 60.0%
GCCTTATGCGCCTTGTGTGG+TGG + chr7_3:85696907-85696926 Msa1132860:three_prime_UTR 60.0%
GCCACCACACAAGGCGCATA+AGG - chr7_3:85696911-85696930 None:intergenic 60.0%
TATGCGCCTTGTGTGGTGGC+AGG + chr7_3:85696911-85696930 Msa1132860:three_prime_UTR 60.0%
TGGCTTCCTGCCACCACACA+AGG - chr7_3:85696920-85696939 None:intergenic 60.0%
! GAGATGGGTGGATTCTCGCG+AGG + chr7_3:85697343-85697362 Msa1132860:three_prime_UTR 60.0%
TTCTCGCGAGGGTCTGTGTG+AGG + chr7_3:85697355-85697374 Msa1132860:three_prime_UTR 60.0%
AGAACCTGAGCAGGCACAGC+TGG - chr7_3:85697476-85697495 None:intergenic 60.0%
TGACGGCCGACGAGCAACTC+CGG - chr7_3:85695616-85695635 None:intergenic 65.0%
CTTGACAGGGCCAGCGCTGT+TGG - chr7_3:85696978-85696997 None:intergenic 65.0%
AGCACCCCTCGTGCAAGCCT+TGG - chr7_3:85697539-85697558 None:intergenic 65.0%
! AAGGCTTGCACGAGGGGTGC+TGG + chr7_3:85697538-85697557 Msa1132860:three_prime_UTR 65.0%
!! AGGCTTGCACGAGGGGTGCT+GGG + chr7_3:85697539-85697558 Msa1132860:three_prime_UTR 65.0%
TGACGGCCGACGAGCAACTC+CGG - chr7_3:85695616-85695635 None:intergenic 65.0%
CTTGACAGGGCCAGCGCTGT+TGG - chr7_3:85696978-85696997 None:intergenic 65.0%
AGCACCCCTCGTGCAAGCCT+TGG - chr7_3:85697539-85697558 None:intergenic 65.0%
! AAGGCTTGCACGAGGGGTGC+TGG + chr7_3:85697538-85697557 Msa1132860:three_prime_UTR 65.0%
!! AGGCTTGCACGAGGGGTGCT+GGG + chr7_3:85697539-85697558 Msa1132860:three_prime_UTR 65.0%
! GGCTGGGAGTGTGCCTGCTG+AGG + chr7_3:85697433-85697452 Msa1132860:three_prime_UTR 70.0%
! GGCACAGCTGGCAGGAGCAC+TGG - chr7_3:85697464-85697483 None:intergenic 70.0%
CCTGAGCAGGCACAGCTGGC+AGG - chr7_3:85697472-85697491 None:intergenic 70.0%
CCTGCCAGCTGTGCCTGCTC+AGG + chr7_3:85697469-85697488 Msa1132860:three_prime_UTR 70.0%
! GGCTGGGAGTGTGCCTGCTG+AGG + chr7_3:85697433-85697452 Msa1132860:three_prime_UTR 70.0%
! GGCACAGCTGGCAGGAGCAC+TGG - chr7_3:85697464-85697483 None:intergenic 70.0%
CCTGAGCAGGCACAGCTGGC+AGG - chr7_3:85697472-85697491 None:intergenic 70.0%
CCTGCCAGCTGTGCCTGCTC+AGG + chr7_3:85697469-85697488 Msa1132860:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 85695483 85697929 85695483 ID=Msa1132860;Name=Msa1132860
chr7_3 mRNA 85695483 85697929 85695483 ID=Msa1132860-mRNA-1;Parent=Msa1132860;Name=Msa1132860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|0|0|2|1231|63
chr7_3 exon 85695483 85695667 85695483 ID=Msa1132860-mRNA-1:exon:25733;Parent=Msa1132860-mRNA-1
chr7_3 exon 85696692 85697929 85696692 ID=Msa1132860-mRNA-1:exon:25734;Parent=Msa1132860-mRNA-1
chr7_3 CDS 85695483 85695667 85695483 ID=Msa1132860-mRNA-1:cds;Parent=Msa1132860-mRNA-1
chr7_3 CDS 85696692 85696698 85696692 ID=Msa1132860-mRNA-1:cds;Parent=Msa1132860-mRNA-1
chr7_3 three_prime_UTR 85696699 85697929 85696699 ID=Msa1132860-mRNA-1:three_prime_utr;Parent=Msa1132860-mRNA-1
Gene Sequence

>Msa1132860

ATGAGAAATTTTCGGATTCTAATCACACAGAAAAAAAAATCACAAGCCCAATCCACTTCCGTTGAAGAAGCCTACTGTATGTTAGATCGGAAACAAGTTGGATTGGTGTCCGCACTCAACTCAACTTCAGCCGGAGTTGCTCGTCGGCCGTCAGAAACACTGACGAAGTCATCAACATCATCCAGGCATTAA
Protein sequence

>Msa1132860

MRNFRILITQKKKSQAQSTSVEEAYCMLDRKQVGLVSALNSTSAGVARRPSETLTKSSTSSRH*