AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0580390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 125 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGTGCTTATCATGATTT+TGG 0.160053 4_1:-85435869 None:intergenic
TCCAATTCTTCCATAGTTTC+TGG 0.164945 4_1:-85435083 None:intergenic
CAACCATGACTTACTAATTT+TGG 0.169811 4_1:-85435006 None:intergenic
TGGATGTTCAATTAATTTAT+TGG 0.196351 4_1:-85434949 None:intergenic
TAATTGTTTAATAAGTTTAT+TGG 0.212114 4_1:+85435679 Msa0580390:three_prime_UTR
CATGATAAGGCAGCGATTTA+AGG 0.214236 4_1:-85435229 None:intergenic
CTTACAAAAGGCACGGAAAT+TGG 0.230251 4_1:+85435406 Msa0580390:three_prime_UTR
AGCTTGTCTTAGGGCCTGTT+TGG 0.288788 4_1:-85435916 None:intergenic
ATTGGCAAACAATTTGTCTA+TGG 0.294301 4_1:-85434931 None:intergenic
ATGAGGCCTGAGTTATTTAC+AGG 0.309434 4_1:+85435767 Msa0580390:three_prime_UTR
TTCTTCAACGGAAGTGGATT+GGG 0.319925 4_1:-85433523 None:intergenic
TCCAGAAACTATGGAAGAAT+TGG 0.324623 4_1:+85435082 Msa0580390:three_prime_UTR
AAGGCTTGCACGAGGGGTGC+TGG 0.344303 4_1:+85435532 Msa0580390:three_prime_UTR
CTCTTCTTGCATCGTCGATC+CGG 0.348391 4_1:-85435046 None:intergenic
CCTGCCAGCTGTGCCTGCTC+AGG 0.364956 4_1:+85435463 Msa0580390:three_prime_UTR
TTTAGCTGTTTCAACATTCA+AGG 0.375145 4_1:-85434847 None:intergenic
GGCACAGCTGGCAGGAGCAC+TGG 0.386005 4_1:-85435455 None:intergenic
GTCTTAGGGCCTGTTTGGAT+TGG 0.391712 4_1:-85435911 None:intergenic
TTCAACTCAAGTGGACTTCA+TGG 0.391784 4_1:+85435579 Msa0580390:three_prime_UTR
CTTGGCGTTAATCAACCCTT+GGG 0.392019 4_1:+85435631 Msa0580390:three_prime_UTR
TGTGCCTGCTCAGGTTCTCT+TGG 0.392759 4_1:+85435472 Msa0580390:three_prime_UTR
CATAGTAGATACCGTGTTCT+CGG 0.411266 4_1:-85435114 None:intergenic
TTTAACGATTAGCCCATGTT+TGG 0.415198 4_1:-85435297 None:intergenic
AGCACCCCTCGTGCAAGCCT+TGG 0.419292 4_1:-85435530 None:intergenic
GATCATGCAGCCTCACATAT+TGG 0.419523 4_1:+85435182 Msa0580390:three_prime_UTR
CCTTGGCGTTAATCAACCCT+TGG 0.423068 4_1:+85435630 Msa0580390:three_prime_UTR
ACATGGGCTAATCGTTAAAC+AGG 0.424852 4_1:+85435301 Msa0580390:three_prime_UTR
AAGGCGCATAAGGCCAATCC+TGG 0.426108 4_1:-85434892 None:intergenic
CTTCTTCAACGGAAGTGGAT+TGG 0.429621 4_1:-85433524 None:intergenic
AATGCAGCTTTCCGCATAGA+TGG 0.432684 4_1:-85434813 None:intergenic
CACCGACATTCCAGAAACTA+TGG 0.432903 4_1:+85435073 Msa0580390:three_prime_UTR
TGCTGGGAATACCACCTTTG+TGG 0.435864 4_1:+85435549 Msa0580390:three_prime_UTR
CCTGAGCAGGCACAGCTGGC+AGG 0.442970 4_1:-85435463 None:intergenic
AGAACCTGAGCAGGCACAGC+TGG 0.443395 4_1:-85435467 None:intergenic
TGTTTGGATGCTATTGCCCT+TGG 0.447361 4_1:-85435281 None:intergenic
TCGCACTTGTTGTACGCAAT+GGG 0.447959 4_1:-85434748 None:intergenic
GCAAATAAACCAATCCAAAC+AGG 0.452043 4_1:+85435902 Msa0580390:three_prime_UTR
GTAGGCTTCTTCAACGGAAG+TGG 0.454599 4_1:-85433529 None:intergenic
GTTCTGCATCTAGTAACTTA+AGG 0.460780 4_1:+85434715 Msa0580390:three_prime_UTR
CAAAAGGCACGGAAATTGGC+TGG 0.465990 4_1:+85435410 Msa0580390:three_prime_UTR
TCTTCTTGCATCGTCGATCC+GGG 0.467160 4_1:-85435045 None:intergenic
TCTCTTGGATTCCCTACGCC+GGG 0.469407 4_1:+85435487 Msa0580390:three_prime_UTR
GCCACCACACAAGGCGCATA+AGG 0.473025 4_1:-85434902 None:intergenic
TCTCTGCAATCACACTTGAC+AGG 0.474712 4_1:-85434983 None:intergenic
AGGCTTGCACGAGGGGTGCT+GGG 0.476721 4_1:+85435533 Msa0580390:three_prime_UTR
CTAAACTAGTTTAGTTACCT+TGG 0.479176 4_1:+85435613 Msa0580390:three_prime_UTR
CTTGACAGGGCCAGCGCTGT+TGG 0.479492 4_1:-85434969 None:intergenic
ATCAAATTGCACCCGGCGTA+GGG 0.494435 4_1:-85435498 None:intergenic
GTTGCTTCAGATCCCAGGAT+TGG 0.495782 4_1:+85434879 Msa0580390:three_prime_UTR
TTCGCACTTGTTGTACGCAA+TGG 0.499355 4_1:-85434749 None:intergenic
CGGTTGTGACCAGCATGATA+AGG 0.504331 4_1:-85435242 None:intergenic
TTCTCTTGGATTCCCTACGC+CGG 0.506279 4_1:+85435486 Msa0580390:three_prime_UTR
TGGATGTTGCTTCAGATCCC+AGG 0.510117 4_1:+85434874 Msa0580390:three_prime_UTR
TTCCATAGTTTCTGGAATGT+CGG 0.513075 4_1:-85435075 None:intergenic
CGCAAGGATTTAATGAGTGG+TGG 0.516421 4_1:+85434693 Msa0580390:three_prime_UTR
TGTTGGCCTGTAAATAACTC+AGG 0.518520 4_1:-85435773 None:intergenic
GGAAGGTCAAGGAGAGAGAT+GGG 0.518846 4_1:+85435322 Msa0580390:three_prime_UTR
AAGCCTACTGTATGTTAGAT+CGG 0.520343 4_1:+85433544 Msa0580390:CDS
AAATCGCTGCCTTATCATGC+TGG 0.522737 4_1:+85435233 Msa0580390:three_prime_UTR
TGATCCAAGGCTTGCACGAG+GGG 0.526320 4_1:+85435526 Msa0580390:three_prime_UTR
AGCCAATGCACACTTACAAA+AGG 0.527197 4_1:+85435394 Msa0580390:three_prime_UTR
AGGAAGGTCAAGGAGAGAGA+TGG 0.527843 4_1:+85435321 Msa0580390:three_prime_UTR
TATGCGCCTTGTGTGGTGGC+AGG 0.528538 4_1:+85434905 Msa0580390:three_prime_UTR
AGATCGGAAACAAGTTGGAT+TGG 0.529168 4_1:+85433560 Msa0580390:CDS
TGGCTTCCTGCCACCACACA+AGG 0.536207 4_1:-85434911 None:intergenic
ATGTTAGATCGGAAACAAGT+TGG 0.537118 4_1:+85433555 Msa0580390:CDS
GCACTCAACTCAACTTCAGC+CGG 0.547160 4_1:+85433588 Msa0580390:CDS
CATCAAATTGCACCCGGCGT+AGG 0.548272 4_1:-85435499 None:intergenic
TTTCCGATCTAACATACAGT+AGG 0.549642 4_1:-85433547 None:intergenic
GGCTGGGAGTGTGCCTGCTG+AGG 0.550043 4_1:+85435427 Msa0580390:three_prime_UTR
AGGGCAATAGCATCCAAACA+TGG 0.560245 4_1:+85435284 Msa0580390:three_prime_UTR
AGCACTGGAATAGCCTCAGC+AGG 0.562374 4_1:-85435440 None:intergenic
TGAAACGATCTGTTGAAGCC+CGG 0.564950 4_1:+85435027 Msa0580390:three_prime_UTR
GAATCCAAGAGAACCTGAGC+AGG 0.565134 4_1:-85435476 None:intergenic
CGAAGTCATCAACATCATCC+AGG 0.569800 4_1:+85433640 Msa0580390:CDS
AATTTGATGTGTTTGATCCA+AGG 0.570713 4_1:+85435513 Msa0580390:three_prime_UTR
GTGTGAGGCAGTTTATGAAA+TGG 0.571413 4_1:+85435364 Msa0580390:three_prime_UTR
CTCTGCAATCACACTTGACA+GGG 0.573273 4_1:-85434982 None:intergenic
AGACCAAAATTAGTAAGTCA+TGG 0.574427 4_1:+85435003 Msa0580390:three_prime_UTR
TGACGGCCGACGAGCAACTC+CGG 0.577905 4_1:-85433607 None:intergenic
AGGTCAAGGAGAGAGATGGG+TGG 0.579175 4_1:+85435325 Msa0580390:three_prime_UTR
CATCTGTAGGCATTAACGCA+AGG 0.580140 4_1:+85434677 Msa0580390:intron
AGAATCTAGTTACTGTTACA+TGG 0.581932 4_1:-85435703 None:intergenic
CTGTTTCAACATTCAAGGCA+CGG 0.582336 4_1:-85434842 None:intergenic
AATTGAACATCCAACAGCGC+TGG 0.586583 4_1:+85434959 Msa0580390:three_prime_UTR
GCCTTATGCGCCTTGTGTGG+TGG 0.587629 4_1:+85434901 Msa0580390:three_prime_UTR
ATCGTTAAACAGGAAGGTCA+AGG 0.590180 4_1:+85435311 Msa0580390:three_prime_UTR
TAACGCAAGGATTTAATGAG+TGG 0.593914 4_1:+85434690 Msa0580390:exon
AAGTCCACTTGAGTTGAAGC+TGG 0.593973 4_1:-85435574 None:intergenic
TCAAGTGGACTTCATGGAGA+AGG 0.595439 4_1:+85435585 Msa0580390:three_prime_UTR
TTCTCGCGAGGGTCTGTGTG+AGG 0.600535 4_1:+85435349 Msa0580390:three_prime_UTR
CATACAGTAGGCTTCTTCAA+CGG 0.601152 4_1:-85433535 None:intergenic
AAAAGGCACGGAAATTGGCT+GGG 0.603375 4_1:+85435411 Msa0580390:three_prime_UTR
TCACATATTGGCAAGGCTAG+TGG 0.604755 4_1:+85435194 Msa0580390:three_prime_UTR
CAAACACATCAAATTGCACC+CGG 0.606483 4_1:-85435505 None:intergenic
GGTACCAGCTTCAACTCAAG+TGG 0.609461 4_1:+85435570 Msa0580390:three_prime_UTR
TTTGATCCAAGGCTTGCACG+AGG 0.609726 4_1:+85435524 Msa0580390:three_prime_UTR
CCAAGGGTTGATTAACGCCA+AGG 0.610632 4_1:-85435630 None:intergenic
CATAGTTTCTGGAATGTCGG+TGG 0.610747 4_1:-85435072 None:intergenic
CTTCAGCCGGAGTTGCTCGT+CGG 0.612012 4_1:+85433601 Msa0580390:CDS
GACTTCGTCAGTGTTTCTGA+CGG 0.616849 4_1:-85433624 None:intergenic
AGGCGCATAAGGCCAATCCT+GGG 0.619021 4_1:-85434891 None:intergenic
TGCAGCCTCACATATTGGCA+AGG 0.620209 4_1:+85435187 Msa0580390:three_prime_UTR
AGATGGGTGGATTCTCGCGA+GGG 0.621395 4_1:+85435338 Msa0580390:three_prime_UTR
TGGCGTTAATCAACCCTTGG+GGG 0.621962 4_1:+85435633 Msa0580390:three_prime_UTR
TTGTACTTGACACTTCAAGC+TGG 0.625478 4_1:+85435137 Msa0580390:three_prime_UTR
TTGATCCAAGGCTTGCACGA+GGG 0.629176 4_1:+85435525 Msa0580390:three_prime_UTR
TACTTGACACTTCAAGCTGG+CGG 0.631640 4_1:+85435140 Msa0580390:three_prime_UTR
GGGCAATAGCATCCAAACAT+GGG 0.631843 4_1:+85435285 Msa0580390:three_prime_UTR
ATGCACACTTACAAAAGGCA+CGG 0.641522 4_1:+85435399 Msa0580390:three_prime_UTR
TGTTGAAACAGCTAAAGCGA+TGG 0.649208 4_1:+85434854 Msa0580390:three_prime_UTR
GATCGACGATGCAAGAAGAG+AGG 0.649326 4_1:+85435049 Msa0580390:three_prime_UTR
TAGATGGAGGTAATTCGAGA+AGG 0.649396 4_1:-85434797 None:intergenic
GGGCTAATCGTTAAACAGGA+AGG 0.649412 4_1:+85435305 Msa0580390:three_prime_UTR
GGAGAAATATGCCGAGAACA+CGG 0.651307 4_1:+85435103 Msa0580390:three_prime_UTR
TTGGCGTTAATCAACCCTTG+GGG 0.651882 4_1:+85435632 Msa0580390:three_prime_UTR
CGAGAAGGCAGAGATAGTGA+TGG 0.655909 4_1:-85434782 None:intergenic
GAGATGGGTGGATTCTCGCG+AGG 0.657859 4_1:+85435337 Msa0580390:three_prime_UTR
GCAGCTTTCCGCATAGATGG+AGG 0.659881 4_1:-85434810 None:intergenic
TTGGCCTTATGCGCCTTGTG+TGG 0.661315 4_1:+85434898 Msa0580390:three_prime_UTR
GGCTGAAGTTGAGTTGAGTG+CGG 0.665617 4_1:-85433586 None:intergenic
ACTAGCCTTGCCAATATGTG+AGG 0.668625 4_1:-85435192 None:intergenic
TGAAGCTGGTACCACAAAGG+TGG 0.671108 4_1:-85435560 None:intergenic
AGTTGAAGCTGGTACCACAA+AGG 0.678191 4_1:-85435563 None:intergenic
TCGAATTACCTCCATCTATG+CGG 0.683768 4_1:+85434802 Msa0580390:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAACTTTTTTTTAAAATATA+TGG + chr4_1:85434630-85434649 Msa0580390:intron 10.0%
!!! TTTTTTTTAAAATATATGGT+AGG + chr4_1:85434634-85434653 Msa0580390:intron 10.0%
!!! TTTTTTTAAAATATATGGTA+GGG + chr4_1:85434635-85434654 Msa0580390:intron 10.0%
!! TAATTGTTTAATAAGTTTAT+TGG + chr4_1:85435679-85435698 Msa0580390:three_prime_UTR 10.0%
!!! CAACTTTTTTTTAAAATATA+TGG + chr4_1:85434630-85434649 Msa0580390:intron 10.0%
!!! TTTTTTTTAAAATATATGGT+AGG + chr4_1:85434634-85434653 Msa0580390:intron 10.0%
!!! TTTTTTTAAAATATATGGTA+GGG + chr4_1:85434635-85434654 Msa0580390:intron 10.0%
!! TAATTGTTTAATAAGTTTAT+TGG + chr4_1:85435679-85435698 Msa0580390:three_prime_UTR 10.0%
!!! TGAATTAGTTTATTTATACT+AGG + chr4_1:85434169-85434188 Msa0580390:intron 15.0%
!!! TAATTTCTAAAATTTGTGTT+AGG + chr4_1:85434274-85434293 Msa0580390:intron 15.0%
!!! AAAAAAAAGTTTTTAAAGAG+AGG - chr4_1:85434450-85434469 None:intergenic 15.0%
!!! ATAAAACTAACTGAAATTTT+TGG + chr4_1:85434486-85434505 Msa0580390:intron 15.0%
!!! TGAATTAGTTTATTTATACT+AGG + chr4_1:85434169-85434188 Msa0580390:intron 15.0%
!!! TAATTTCTAAAATTTGTGTT+AGG + chr4_1:85434274-85434293 Msa0580390:intron 15.0%
!!! AAAAAAAAGTTTTTAAAGAG+AGG - chr4_1:85434450-85434469 None:intergenic 15.0%
!!! ATAAAACTAACTGAAATTTT+TGG + chr4_1:85434486-85434505 Msa0580390:intron 15.0%
!! AAAGAAAAAAAAGTAAAACC+TGG - chr4_1:85433661-85433680 None:intergenic 20.0%
!!! ATTGTTTTTGTATAAGCTAT+AGG - chr4_1:85433857-85433876 None:intergenic 20.0%
!! AATTCCCAATTAGTATAATT+AGG + chr4_1:85433967-85433986 Msa0580390:intron 20.0%
!! AACACCTAATTATACTAATT+GGG - chr4_1:85433974-85433993 None:intergenic 20.0%
!! GTAATATAAAATGCTAGTTA+GGG - chr4_1:85434411-85434430 None:intergenic 20.0%
!! TGGATGTTCAATTAATTTAT+TGG - chr4_1:85434952-85434971 None:intergenic 20.0%
!!! CATTGTATCTTTTTAAAATG+AGG + chr4_1:85435750-85435769 Msa0580390:three_prime_UTR 20.0%
!! AAAGAAAAAAAAGTAAAACC+TGG - chr4_1:85433661-85433680 None:intergenic 20.0%
!!! ATTGTTTTTGTATAAGCTAT+AGG - chr4_1:85433857-85433876 None:intergenic 20.0%
!! AATTCCCAATTAGTATAATT+AGG + chr4_1:85433967-85433986 Msa0580390:intron 20.0%
!! AACACCTAATTATACTAATT+GGG - chr4_1:85433974-85433993 None:intergenic 20.0%
!! GTAATATAAAATGCTAGTTA+GGG - chr4_1:85434411-85434430 None:intergenic 20.0%
!! TGGATGTTCAATTAATTTAT+TGG - chr4_1:85434952-85434971 None:intergenic 20.0%
!!! CATTGTATCTTTTTAAAATG+AGG + chr4_1:85435750-85435769 Msa0580390:three_prime_UTR 20.0%
! AGCTTCTAATATATGCTAAA+GGG - chr4_1:85433946-85433965 None:intergenic 25.0%
! AAGCTTCTAATATATGCTAA+AGG - chr4_1:85433947-85433966 None:intergenic 25.0%
! CAACACCTAATTATACTAAT+TGG - chr4_1:85433975-85433994 None:intergenic 25.0%
! CAATTAGTATAATTAGGTGT+TGG + chr4_1:85433973-85433992 Msa0580390:intron 25.0%
! GGTAATATAAAATGCTAGTT+AGG - chr4_1:85434412-85434431 None:intergenic 25.0%
! AGTCGTTAAGTTTACAAATA+TGG + chr4_1:85434543-85434562 Msa0580390:intron 25.0%
! TTGGAATGTAAGAAAAATGT+CGG - chr4_1:85435265-85435284 None:intergenic 25.0%
!! ACATTTTTCTTACATTCCAA+GGG + chr4_1:85435265-85435284 Msa0580390:three_prime_UTR 25.0%
!! ATGCTCAAATACAATTTTGT+TGG - chr4_1:85435793-85435812 None:intergenic 25.0%
! AGCTTCTAATATATGCTAAA+GGG - chr4_1:85433946-85433965 None:intergenic 25.0%
! AAGCTTCTAATATATGCTAA+AGG - chr4_1:85433947-85433966 None:intergenic 25.0%
! CAACACCTAATTATACTAAT+TGG - chr4_1:85433975-85433994 None:intergenic 25.0%
! CAATTAGTATAATTAGGTGT+TGG + chr4_1:85433973-85433992 Msa0580390:intron 25.0%
! GGTAATATAAAATGCTAGTT+AGG - chr4_1:85434412-85434431 None:intergenic 25.0%
! AGTCGTTAAGTTTACAAATA+TGG + chr4_1:85434543-85434562 Msa0580390:intron 25.0%
! TTGGAATGTAAGAAAAATGT+CGG - chr4_1:85435265-85435284 None:intergenic 25.0%
!! ACATTTTTCTTACATTCCAA+GGG + chr4_1:85435265-85435284 Msa0580390:three_prime_UTR 25.0%
!! ATGCTCAAATACAATTTTGT+TGG - chr4_1:85435793-85435812 None:intergenic 25.0%
! AAACAACTGTCTTGCATTTT+CGG + chr4_1:85434114-85434133 Msa0580390:intron 30.0%
!! ATACTAGGTTACAGTTTTAG+TGG + chr4_1:85434184-85434203 Msa0580390:intron 30.0%
!! TACTAGGTTACAGTTTTAGT+GGG + chr4_1:85434185-85434204 Msa0580390:intron 30.0%
! AGTCCTCAAAGTAACTTTTA+GGG + chr4_1:85434218-85434237 Msa0580390:intron 30.0%
GTGTGTATAGTGAAATGTAT+TGG + chr4_1:85434607-85434626 Msa0580390:intron 30.0%
TTGATGTAACTTTCATCTGT+AGG + chr4_1:85434664-85434683 Msa0580390:intron 30.0%
! TTTAGCTGTTTCAACATTCA+AGG - chr4_1:85434850-85434869 None:intergenic 30.0%
ATTGGCAAACAATTTGTCTA+TGG - chr4_1:85434934-85434953 None:intergenic 30.0%
AGACCAAAATTAGTAAGTCA+TGG + chr4_1:85435003-85435022 Msa0580390:three_prime_UTR 30.0%
! CAACCATGACTTACTAATTT+TGG - chr4_1:85435009-85435028 None:intergenic 30.0%
! GACATTTTTCTTACATTCCA+AGG + chr4_1:85435264-85435283 Msa0580390:three_prime_UTR 30.0%
AATTTGATGTGTTTGATCCA+AGG + chr4_1:85435513-85435532 Msa0580390:three_prime_UTR 30.0%
! CTAAACTAGTTTAGTTACCT+TGG + chr4_1:85435613-85435632 Msa0580390:three_prime_UTR 30.0%
AGAATCTAGTTACTGTTACA+TGG - chr4_1:85435706-85435725 None:intergenic 30.0%
! ACAAGTGCTTATCATGATTT+TGG - chr4_1:85435872-85435891 None:intergenic 30.0%
! AAACAACTGTCTTGCATTTT+CGG + chr4_1:85434114-85434133 Msa0580390:intron 30.0%
!! ATACTAGGTTACAGTTTTAG+TGG + chr4_1:85434184-85434203 Msa0580390:intron 30.0%
!! TACTAGGTTACAGTTTTAGT+GGG + chr4_1:85434185-85434204 Msa0580390:intron 30.0%
! AGTCCTCAAAGTAACTTTTA+GGG + chr4_1:85434218-85434237 Msa0580390:intron 30.0%
GTGTGTATAGTGAAATGTAT+TGG + chr4_1:85434607-85434626 Msa0580390:intron 30.0%
TTGATGTAACTTTCATCTGT+AGG + chr4_1:85434664-85434683 Msa0580390:intron 30.0%
! TTTAGCTGTTTCAACATTCA+AGG - chr4_1:85434850-85434869 None:intergenic 30.0%
ATTGGCAAACAATTTGTCTA+TGG - chr4_1:85434934-85434953 None:intergenic 30.0%
AGACCAAAATTAGTAAGTCA+TGG + chr4_1:85435003-85435022 Msa0580390:three_prime_UTR 30.0%
! CAACCATGACTTACTAATTT+TGG - chr4_1:85435009-85435028 None:intergenic 30.0%
! GACATTTTTCTTACATTCCA+AGG + chr4_1:85435264-85435283 Msa0580390:three_prime_UTR 30.0%
AATTTGATGTGTTTGATCCA+AGG + chr4_1:85435513-85435532 Msa0580390:three_prime_UTR 30.0%
! CTAAACTAGTTTAGTTACCT+TGG + chr4_1:85435613-85435632 Msa0580390:three_prime_UTR 30.0%
AGAATCTAGTTACTGTTACA+TGG - chr4_1:85435706-85435725 None:intergenic 30.0%
! ACAAGTGCTTATCATGATTT+TGG - chr4_1:85435872-85435891 None:intergenic 30.0%
AAGCCTACTGTATGTTAGAT+CGG + chr4_1:85433544-85433563 Msa0580390:CDS 35.0%
TTTCCGATCTAACATACAGT+AGG - chr4_1:85433550-85433569 None:intergenic 35.0%
ATGTTAGATCGGAAACAAGT+TGG + chr4_1:85433555-85433574 Msa0580390:CDS 35.0%
TATGATCTACAGCGCAATTT+AGG - chr4_1:85433740-85433759 None:intergenic 35.0%
! CTAAAAGTTACTTTGAGGAC+TGG - chr4_1:85434219-85434238 None:intergenic 35.0%
! CAGTCCTCAAAGTAACTTTT+AGG + chr4_1:85434217-85434236 Msa0580390:intron 35.0%
! GTCCTCAAAGTAACTTTTAG+GGG + chr4_1:85434219-85434238 Msa0580390:intron 35.0%
TAACGCAAGGATTTAATGAG+TGG + chr4_1:85434690-85434709 Msa0580390:exon 35.0%
GTTCTGCATCTAGTAACTTA+AGG + chr4_1:85434715-85434734 Msa0580390:three_prime_UTR 35.0%
!! TTCCATAGTTTCTGGAATGT+CGG - chr4_1:85435078-85435097 None:intergenic 35.0%
TCCAGAAACTATGGAAGAAT+TGG + chr4_1:85435082-85435101 Msa0580390:three_prime_UTR 35.0%
TCCAATTCTTCCATAGTTTC+TGG - chr4_1:85435086-85435105 None:intergenic 35.0%
! TTTAACGATTAGCCCATGTT+TGG - chr4_1:85435300-85435319 None:intergenic 35.0%
AAAAATTTCAAGACCCCCAA+GGG - chr4_1:85435649-85435668 None:intergenic 35.0%
AAAAAATTTCAAGACCCCCA+AGG - chr4_1:85435650-85435669 None:intergenic 35.0%
AAGCCTACTGTATGTTAGAT+CGG + chr4_1:85433544-85433563 Msa0580390:CDS 35.0%
TTTCCGATCTAACATACAGT+AGG - chr4_1:85433550-85433569 None:intergenic 35.0%
ATGTTAGATCGGAAACAAGT+TGG + chr4_1:85433555-85433574 Msa0580390:CDS 35.0%
TATGATCTACAGCGCAATTT+AGG - chr4_1:85433740-85433759 None:intergenic 35.0%
! CTAAAAGTTACTTTGAGGAC+TGG - chr4_1:85434219-85434238 None:intergenic 35.0%
! CAGTCCTCAAAGTAACTTTT+AGG + chr4_1:85434217-85434236 Msa0580390:intron 35.0%
! GTCCTCAAAGTAACTTTTAG+GGG + chr4_1:85434219-85434238 Msa0580390:intron 35.0%
TAACGCAAGGATTTAATGAG+TGG + chr4_1:85434690-85434709 Msa0580390:exon 35.0%
GTTCTGCATCTAGTAACTTA+AGG + chr4_1:85434715-85434734 Msa0580390:three_prime_UTR 35.0%
!! TTCCATAGTTTCTGGAATGT+CGG - chr4_1:85435078-85435097 None:intergenic 35.0%
TCCAGAAACTATGGAAGAAT+TGG + chr4_1:85435082-85435101 Msa0580390:three_prime_UTR 35.0%
TCCAATTCTTCCATAGTTTC+TGG - chr4_1:85435086-85435105 None:intergenic 35.0%
! TTTAACGATTAGCCCATGTT+TGG - chr4_1:85435300-85435319 None:intergenic 35.0%
AAAAATTTCAAGACCCCCAA+GGG - chr4_1:85435649-85435668 None:intergenic 35.0%
AAAAAATTTCAAGACCCCCA+AGG - chr4_1:85435650-85435669 None:intergenic 35.0%
! TTCTTCAACGGAAGTGGATT+GGG - chr4_1:85433526-85433545 None:intergenic 40.0%
CATACAGTAGGCTTCTTCAA+CGG - chr4_1:85433538-85433557 None:intergenic 40.0%
! AGATCGGAAACAAGTTGGAT+TGG + chr4_1:85433560-85433579 Msa0580390:CDS 40.0%
! TTCGGCATTAGTTTCAGAGT+AGG + chr4_1:85434132-85434151 Msa0580390:intron 40.0%
! TGCCCCTAAAAGTTACTTTG+AGG - chr4_1:85434224-85434243 None:intergenic 40.0%
TAGATGGAGGTAATTCGAGA+AGG - chr4_1:85434800-85434819 None:intergenic 40.0%
TCGAATTACCTCCATCTATG+CGG + chr4_1:85434802-85434821 Msa0580390:three_prime_UTR 40.0%
CTGTTTCAACATTCAAGGCA+CGG - chr4_1:85434845-85434864 None:intergenic 40.0%
TGTTGAAACAGCTAAAGCGA+TGG + chr4_1:85434854-85434873 Msa0580390:three_prime_UTR 40.0%
CATAGTAGATACCGTGTTCT+CGG - chr4_1:85435117-85435136 None:intergenic 40.0%
TTGTACTTGACACTTCAAGC+TGG + chr4_1:85435137-85435156 Msa0580390:three_prime_UTR 40.0%
CATGATAAGGCAGCGATTTA+AGG - chr4_1:85435232-85435251 None:intergenic 40.0%
! ACATGGGCTAATCGTTAAAC+AGG + chr4_1:85435301-85435320 Msa0580390:three_prime_UTR 40.0%
ATCGTTAAACAGGAAGGTCA+AGG + chr4_1:85435311-85435330 Msa0580390:three_prime_UTR 40.0%
GTGTGAGGCAGTTTATGAAA+TGG + chr4_1:85435364-85435383 Msa0580390:three_prime_UTR 40.0%
AGCCAATGCACACTTACAAA+AGG + chr4_1:85435394-85435413 Msa0580390:three_prime_UTR 40.0%
! TGCCTTTTGTAAGTGTGCAT+TGG - chr4_1:85435399-85435418 None:intergenic 40.0%
ATGCACACTTACAAAAGGCA+CGG + chr4_1:85435399-85435418 Msa0580390:three_prime_UTR 40.0%
! CTTACAAAAGGCACGGAAAT+TGG + chr4_1:85435406-85435425 Msa0580390:three_prime_UTR 40.0%
CAAACACATCAAATTGCACC+CGG - chr4_1:85435508-85435527 None:intergenic 40.0%
! TTCAACTCAAGTGGACTTCA+TGG + chr4_1:85435579-85435598 Msa0580390:three_prime_UTR 40.0%
ATGAGGCCTGAGTTATTTAC+AGG + chr4_1:85435767-85435786 Msa0580390:three_prime_UTR 40.0%
! TGTTGGCCTGTAAATAACTC+AGG - chr4_1:85435776-85435795 None:intergenic 40.0%
! TTCTTCAACGGAAGTGGATT+GGG - chr4_1:85433526-85433545 None:intergenic 40.0%
CATACAGTAGGCTTCTTCAA+CGG - chr4_1:85433538-85433557 None:intergenic 40.0%
! AGATCGGAAACAAGTTGGAT+TGG + chr4_1:85433560-85433579 Msa0580390:CDS 40.0%
! TTCGGCATTAGTTTCAGAGT+AGG + chr4_1:85434132-85434151 Msa0580390:intron 40.0%
! TGCCCCTAAAAGTTACTTTG+AGG - chr4_1:85434224-85434243 None:intergenic 40.0%
TAGATGGAGGTAATTCGAGA+AGG - chr4_1:85434800-85434819 None:intergenic 40.0%
TCGAATTACCTCCATCTATG+CGG + chr4_1:85434802-85434821 Msa0580390:three_prime_UTR 40.0%
CTGTTTCAACATTCAAGGCA+CGG - chr4_1:85434845-85434864 None:intergenic 40.0%
TGTTGAAACAGCTAAAGCGA+TGG + chr4_1:85434854-85434873 Msa0580390:three_prime_UTR 40.0%
CATAGTAGATACCGTGTTCT+CGG - chr4_1:85435117-85435136 None:intergenic 40.0%
TTGTACTTGACACTTCAAGC+TGG + chr4_1:85435137-85435156 Msa0580390:three_prime_UTR 40.0%
CATGATAAGGCAGCGATTTA+AGG - chr4_1:85435232-85435251 None:intergenic 40.0%
! ACATGGGCTAATCGTTAAAC+AGG + chr4_1:85435301-85435320 Msa0580390:three_prime_UTR 40.0%
ATCGTTAAACAGGAAGGTCA+AGG + chr4_1:85435311-85435330 Msa0580390:three_prime_UTR 40.0%
GTGTGAGGCAGTTTATGAAA+TGG + chr4_1:85435364-85435383 Msa0580390:three_prime_UTR 40.0%
AGCCAATGCACACTTACAAA+AGG + chr4_1:85435394-85435413 Msa0580390:three_prime_UTR 40.0%
! TGCCTTTTGTAAGTGTGCAT+TGG - chr4_1:85435399-85435418 None:intergenic 40.0%
ATGCACACTTACAAAAGGCA+CGG + chr4_1:85435399-85435418 Msa0580390:three_prime_UTR 40.0%
! CTTACAAAAGGCACGGAAAT+TGG + chr4_1:85435406-85435425 Msa0580390:three_prime_UTR 40.0%
CAAACACATCAAATTGCACC+CGG - chr4_1:85435508-85435527 None:intergenic 40.0%
! TTCAACTCAAGTGGACTTCA+TGG + chr4_1:85435579-85435598 Msa0580390:three_prime_UTR 40.0%
ATGAGGCCTGAGTTATTTAC+AGG + chr4_1:85435767-85435786 Msa0580390:three_prime_UTR 40.0%
! TGTTGGCCTGTAAATAACTC+AGG - chr4_1:85435776-85435795 None:intergenic 40.0%
CTTCTTCAACGGAAGTGGAT+TGG - chr4_1:85433527-85433546 None:intergenic 45.0%
! GACTTCGTCAGTGTTTCTGA+CGG - chr4_1:85433627-85433646 None:intergenic 45.0%
CGAAGTCATCAACATCATCC+AGG + chr4_1:85433640-85433659 Msa0580390:CDS 45.0%
GAACGCGATGATACGATTTG+CGG + chr4_1:85433698-85433717 Msa0580390:intron 45.0%
ATCGCTATTGCGCGCTATAT+CGG + chr4_1:85433772-85433791 Msa0580390:intron 45.0%
AAAGAGAGGACTCACTGTGA+TGG - chr4_1:85434436-85434455 None:intergenic 45.0%
CATCTGTAGGCATTAACGCA+AGG + chr4_1:85434677-85434696 Msa0580390:intron 45.0%
CGCAAGGATTTAATGAGTGG+TGG + chr4_1:85434693-85434712 Msa0580390:three_prime_UTR 45.0%
!! TCGCACTTGTTGTACGCAAT+GGG - chr4_1:85434751-85434770 None:intergenic 45.0%
!! TTCGCACTTGTTGTACGCAA+TGG - chr4_1:85434752-85434771 None:intergenic 45.0%
AATGCAGCTTTCCGCATAGA+TGG - chr4_1:85434816-85434835 None:intergenic 45.0%
AATTGAACATCCAACAGCGC+TGG + chr4_1:85434959-85434978 Msa0580390:three_prime_UTR 45.0%
CTCTGCAATCACACTTGACA+GGG - chr4_1:85434985-85435004 None:intergenic 45.0%
TCTCTGCAATCACACTTGAC+AGG - chr4_1:85434986-85435005 None:intergenic 45.0%
TGAAACGATCTGTTGAAGCC+CGG + chr4_1:85435027-85435046 Msa0580390:three_prime_UTR 45.0%
!! CATAGTTTCTGGAATGTCGG+TGG - chr4_1:85435075-85435094 None:intergenic 45.0%
CACCGACATTCCAGAAACTA+TGG + chr4_1:85435073-85435092 Msa0580390:three_prime_UTR 45.0%
GGAGAAATATGCCGAGAACA+CGG + chr4_1:85435103-85435122 Msa0580390:three_prime_UTR 45.0%
TACTTGACACTTCAAGCTGG+CGG + chr4_1:85435140-85435159 Msa0580390:three_prime_UTR 45.0%
GATCATGCAGCCTCACATAT+TGG + chr4_1:85435182-85435201 Msa0580390:three_prime_UTR 45.0%
!! ACTAGCCTTGCCAATATGTG+AGG - chr4_1:85435195-85435214 None:intergenic 45.0%
TCACATATTGGCAAGGCTAG+TGG + chr4_1:85435194-85435213 Msa0580390:three_prime_UTR 45.0%
AAATCGCTGCCTTATCATGC+TGG + chr4_1:85435233-85435252 Msa0580390:three_prime_UTR 45.0%
TGTTTGGATGCTATTGCCCT+TGG - chr4_1:85435284-85435303 None:intergenic 45.0%
AGGGCAATAGCATCCAAACA+TGG + chr4_1:85435284-85435303 Msa0580390:three_prime_UTR 45.0%
GGGCAATAGCATCCAAACAT+GGG + chr4_1:85435285-85435304 Msa0580390:three_prime_UTR 45.0%
GGGCTAATCGTTAAACAGGA+AGG + chr4_1:85435305-85435324 Msa0580390:three_prime_UTR 45.0%
! AAAAGGCACGGAAATTGGCT+GGG + chr4_1:85435411-85435430 Msa0580390:three_prime_UTR 45.0%
AGTTGAAGCTGGTACCACAA+AGG - chr4_1:85435566-85435585 None:intergenic 45.0%
!! AAGTCCACTTGAGTTGAAGC+TGG - chr4_1:85435577-85435596 None:intergenic 45.0%
! TCAAGTGGACTTCATGGAGA+AGG + chr4_1:85435585-85435604 Msa0580390:three_prime_UTR 45.0%
CTTGGCGTTAATCAACCCTT+GGG + chr4_1:85435631-85435650 Msa0580390:three_prime_UTR 45.0%
TTGGCGTTAATCAACCCTTG+GGG + chr4_1:85435632-85435651 Msa0580390:three_prime_UTR 45.0%
CTTCTTCAACGGAAGTGGAT+TGG - chr4_1:85433527-85433546 None:intergenic 45.0%
! GACTTCGTCAGTGTTTCTGA+CGG - chr4_1:85433627-85433646 None:intergenic 45.0%
CGAAGTCATCAACATCATCC+AGG + chr4_1:85433640-85433659 Msa0580390:CDS 45.0%
GAACGCGATGATACGATTTG+CGG + chr4_1:85433698-85433717 Msa0580390:intron 45.0%
ATCGCTATTGCGCGCTATAT+CGG + chr4_1:85433772-85433791 Msa0580390:intron 45.0%
AAAGAGAGGACTCACTGTGA+TGG - chr4_1:85434436-85434455 None:intergenic 45.0%
CATCTGTAGGCATTAACGCA+AGG + chr4_1:85434677-85434696 Msa0580390:intron 45.0%
CGCAAGGATTTAATGAGTGG+TGG + chr4_1:85434693-85434712 Msa0580390:three_prime_UTR 45.0%
!! TCGCACTTGTTGTACGCAAT+GGG - chr4_1:85434751-85434770 None:intergenic 45.0%
!! TTCGCACTTGTTGTACGCAA+TGG - chr4_1:85434752-85434771 None:intergenic 45.0%
AATGCAGCTTTCCGCATAGA+TGG - chr4_1:85434816-85434835 None:intergenic 45.0%
AATTGAACATCCAACAGCGC+TGG + chr4_1:85434959-85434978 Msa0580390:three_prime_UTR 45.0%
CTCTGCAATCACACTTGACA+GGG - chr4_1:85434985-85435004 None:intergenic 45.0%
TCTCTGCAATCACACTTGAC+AGG - chr4_1:85434986-85435005 None:intergenic 45.0%
TGAAACGATCTGTTGAAGCC+CGG + chr4_1:85435027-85435046 Msa0580390:three_prime_UTR 45.0%
!! CATAGTTTCTGGAATGTCGG+TGG - chr4_1:85435075-85435094 None:intergenic 45.0%
CACCGACATTCCAGAAACTA+TGG + chr4_1:85435073-85435092 Msa0580390:three_prime_UTR 45.0%
GGAGAAATATGCCGAGAACA+CGG + chr4_1:85435103-85435122 Msa0580390:three_prime_UTR 45.0%
TACTTGACACTTCAAGCTGG+CGG + chr4_1:85435140-85435159 Msa0580390:three_prime_UTR 45.0%
GATCATGCAGCCTCACATAT+TGG + chr4_1:85435182-85435201 Msa0580390:three_prime_UTR 45.0%
!! ACTAGCCTTGCCAATATGTG+AGG - chr4_1:85435195-85435214 None:intergenic 45.0%
TCACATATTGGCAAGGCTAG+TGG + chr4_1:85435194-85435213 Msa0580390:three_prime_UTR 45.0%
AAATCGCTGCCTTATCATGC+TGG + chr4_1:85435233-85435252 Msa0580390:three_prime_UTR 45.0%
TGTTTGGATGCTATTGCCCT+TGG - chr4_1:85435284-85435303 None:intergenic 45.0%
AGGGCAATAGCATCCAAACA+TGG + chr4_1:85435284-85435303 Msa0580390:three_prime_UTR 45.0%
GGGCAATAGCATCCAAACAT+GGG + chr4_1:85435285-85435304 Msa0580390:three_prime_UTR 45.0%
GGGCTAATCGTTAAACAGGA+AGG + chr4_1:85435305-85435324 Msa0580390:three_prime_UTR 45.0%
! AAAAGGCACGGAAATTGGCT+GGG + chr4_1:85435411-85435430 Msa0580390:three_prime_UTR 45.0%
AGTTGAAGCTGGTACCACAA+AGG - chr4_1:85435566-85435585 None:intergenic 45.0%
!! AAGTCCACTTGAGTTGAAGC+TGG - chr4_1:85435577-85435596 None:intergenic 45.0%
! TCAAGTGGACTTCATGGAGA+AGG + chr4_1:85435585-85435604 Msa0580390:three_prime_UTR 45.0%
CTTGGCGTTAATCAACCCTT+GGG + chr4_1:85435631-85435650 Msa0580390:three_prime_UTR 45.0%
TTGGCGTTAATCAACCCTTG+GGG + chr4_1:85435632-85435651 Msa0580390:three_prime_UTR 45.0%
GTAGGCTTCTTCAACGGAAG+TGG - chr4_1:85433532-85433551 None:intergenic 50.0%
!! GGCTGAAGTTGAGTTGAGTG+CGG - chr4_1:85433589-85433608 None:intergenic 50.0%
GCACTCAACTCAACTTCAGC+CGG + chr4_1:85433588-85433607 Msa0580390:CDS 50.0%
CGAGAAGGCAGAGATAGTGA+TGG - chr4_1:85434785-85434804 None:intergenic 50.0%
! TGGATGTTGCTTCAGATCCC+AGG + chr4_1:85434874-85434893 Msa0580390:three_prime_UTR 50.0%
GTTGCTTCAGATCCCAGGAT+TGG + chr4_1:85434879-85434898 Msa0580390:three_prime_UTR 50.0%
TCTTCTTGCATCGTCGATCC+GGG - chr4_1:85435048-85435067 None:intergenic 50.0%
CTCTTCTTGCATCGTCGATC+CGG - chr4_1:85435049-85435068 None:intergenic 50.0%
GATCGACGATGCAAGAAGAG+AGG + chr4_1:85435049-85435068 Msa0580390:three_prime_UTR 50.0%
TGCAGCCTCACATATTGGCA+AGG + chr4_1:85435187-85435206 Msa0580390:three_prime_UTR 50.0%
CGGTTGTGACCAGCATGATA+AGG - chr4_1:85435245-85435264 None:intergenic 50.0%
AGGAAGGTCAAGGAGAGAGA+TGG + chr4_1:85435321-85435340 Msa0580390:three_prime_UTR 50.0%
GGAAGGTCAAGGAGAGAGAT+GGG + chr4_1:85435322-85435341 Msa0580390:three_prime_UTR 50.0%
! CAAAAGGCACGGAAATTGGC+TGG + chr4_1:85435410-85435429 Msa0580390:three_prime_UTR 50.0%
GAATCCAAGAGAACCTGAGC+AGG - chr4_1:85435479-85435498 None:intergenic 50.0%
TTCTCTTGGATTCCCTACGC+CGG + chr4_1:85435486-85435505 Msa0580390:three_prime_UTR 50.0%
ATCAAATTGCACCCGGCGTA+GGG - chr4_1:85435501-85435520 None:intergenic 50.0%
TTTGATCCAAGGCTTGCACG+AGG + chr4_1:85435524-85435543 Msa0580390:three_prime_UTR 50.0%
TTGATCCAAGGCTTGCACGA+GGG + chr4_1:85435525-85435544 Msa0580390:three_prime_UTR 50.0%
TGCTGGGAATACCACCTTTG+TGG + chr4_1:85435549-85435568 Msa0580390:three_prime_UTR 50.0%
TGAAGCTGGTACCACAAAGG+TGG - chr4_1:85435563-85435582 None:intergenic 50.0%
GGTACCAGCTTCAACTCAAG+TGG + chr4_1:85435570-85435589 Msa0580390:three_prime_UTR 50.0%
! CCAAGGGTTGATTAACGCCA+AGG - chr4_1:85435633-85435652 None:intergenic 50.0%
CCTTGGCGTTAATCAACCCT+TGG + chr4_1:85435630-85435649 Msa0580390:three_prime_UTR 50.0%
TGGCGTTAATCAACCCTTGG+GGG + chr4_1:85435633-85435652 Msa0580390:three_prime_UTR 50.0%
GTAGGCTTCTTCAACGGAAG+TGG - chr4_1:85433532-85433551 None:intergenic 50.0%
!! GGCTGAAGTTGAGTTGAGTG+CGG - chr4_1:85433589-85433608 None:intergenic 50.0%
GCACTCAACTCAACTTCAGC+CGG + chr4_1:85433588-85433607 Msa0580390:CDS 50.0%
CGAGAAGGCAGAGATAGTGA+TGG - chr4_1:85434785-85434804 None:intergenic 50.0%
! TGGATGTTGCTTCAGATCCC+AGG + chr4_1:85434874-85434893 Msa0580390:three_prime_UTR 50.0%
GTTGCTTCAGATCCCAGGAT+TGG + chr4_1:85434879-85434898 Msa0580390:three_prime_UTR 50.0%
TCTTCTTGCATCGTCGATCC+GGG - chr4_1:85435048-85435067 None:intergenic 50.0%
CTCTTCTTGCATCGTCGATC+CGG - chr4_1:85435049-85435068 None:intergenic 50.0%
GATCGACGATGCAAGAAGAG+AGG + chr4_1:85435049-85435068 Msa0580390:three_prime_UTR 50.0%
TGCAGCCTCACATATTGGCA+AGG + chr4_1:85435187-85435206 Msa0580390:three_prime_UTR 50.0%
CGGTTGTGACCAGCATGATA+AGG - chr4_1:85435245-85435264 None:intergenic 50.0%
AGGAAGGTCAAGGAGAGAGA+TGG + chr4_1:85435321-85435340 Msa0580390:three_prime_UTR 50.0%
GGAAGGTCAAGGAGAGAGAT+GGG + chr4_1:85435322-85435341 Msa0580390:three_prime_UTR 50.0%
! CAAAAGGCACGGAAATTGGC+TGG + chr4_1:85435410-85435429 Msa0580390:three_prime_UTR 50.0%
GAATCCAAGAGAACCTGAGC+AGG - chr4_1:85435479-85435498 None:intergenic 50.0%
TTCTCTTGGATTCCCTACGC+CGG + chr4_1:85435486-85435505 Msa0580390:three_prime_UTR 50.0%
ATCAAATTGCACCCGGCGTA+GGG - chr4_1:85435501-85435520 None:intergenic 50.0%
TTTGATCCAAGGCTTGCACG+AGG + chr4_1:85435524-85435543 Msa0580390:three_prime_UTR 50.0%
TTGATCCAAGGCTTGCACGA+GGG + chr4_1:85435525-85435544 Msa0580390:three_prime_UTR 50.0%
TGCTGGGAATACCACCTTTG+TGG + chr4_1:85435549-85435568 Msa0580390:three_prime_UTR 50.0%
TGAAGCTGGTACCACAAAGG+TGG - chr4_1:85435563-85435582 None:intergenic 50.0%
GGTACCAGCTTCAACTCAAG+TGG + chr4_1:85435570-85435589 Msa0580390:three_prime_UTR 50.0%
! CCAAGGGTTGATTAACGCCA+AGG - chr4_1:85435633-85435652 None:intergenic 50.0%
CCTTGGCGTTAATCAACCCT+TGG + chr4_1:85435630-85435649 Msa0580390:three_prime_UTR 50.0%
TGGCGTTAATCAACCCTTGG+GGG + chr4_1:85435633-85435652 Msa0580390:three_prime_UTR 50.0%
CGCGCAATAGCGATGCGAAA+TGG - chr4_1:85433766-85433785 None:intergenic 55.0%
GCGCGCTATATCGGCGAAAT+TGG + chr4_1:85433781-85433800 Msa0580390:intron 55.0%
GAGAGGACTCACTGTGATGG+AGG - chr4_1:85434433-85434452 None:intergenic 55.0%
GCAGCTTTCCGCATAGATGG+AGG - chr4_1:85434813-85434832 None:intergenic 55.0%
AGGCGCATAAGGCCAATCCT+GGG - chr4_1:85434894-85434913 None:intergenic 55.0%
AAGGCGCATAAGGCCAATCC+TGG - chr4_1:85434895-85434914 None:intergenic 55.0%
!! TTGGCCTTATGCGCCTTGTG+TGG + chr4_1:85434898-85434917 Msa0580390:three_prime_UTR 55.0%
AGGTCAAGGAGAGAGATGGG+TGG + chr4_1:85435325-85435344 Msa0580390:three_prime_UTR 55.0%
! AGATGGGTGGATTCTCGCGA+GGG + chr4_1:85435338-85435357 Msa0580390:three_prime_UTR 55.0%
! AGCACTGGAATAGCCTCAGC+AGG - chr4_1:85435443-85435462 None:intergenic 55.0%
TGTGCCTGCTCAGGTTCTCT+TGG + chr4_1:85435472-85435491 Msa0580390:three_prime_UTR 55.0%
TCTCTTGGATTCCCTACGCC+GGG + chr4_1:85435487-85435506 Msa0580390:three_prime_UTR 55.0%
CATCAAATTGCACCCGGCGT+AGG - chr4_1:85435502-85435521 None:intergenic 55.0%
TGATCCAAGGCTTGCACGAG+GGG + chr4_1:85435526-85435545 Msa0580390:three_prime_UTR 55.0%
CGCGCAATAGCGATGCGAAA+TGG - chr4_1:85433766-85433785 None:intergenic 55.0%
GCGCGCTATATCGGCGAAAT+TGG + chr4_1:85433781-85433800 Msa0580390:intron 55.0%
GAGAGGACTCACTGTGATGG+AGG - chr4_1:85434433-85434452 None:intergenic 55.0%
GCAGCTTTCCGCATAGATGG+AGG - chr4_1:85434813-85434832 None:intergenic 55.0%
AGGCGCATAAGGCCAATCCT+GGG - chr4_1:85434894-85434913 None:intergenic 55.0%
AAGGCGCATAAGGCCAATCC+TGG - chr4_1:85434895-85434914 None:intergenic 55.0%
!! TTGGCCTTATGCGCCTTGTG+TGG + chr4_1:85434898-85434917 Msa0580390:three_prime_UTR 55.0%
AGGTCAAGGAGAGAGATGGG+TGG + chr4_1:85435325-85435344 Msa0580390:three_prime_UTR 55.0%
! AGATGGGTGGATTCTCGCGA+GGG + chr4_1:85435338-85435357 Msa0580390:three_prime_UTR 55.0%
! AGCACTGGAATAGCCTCAGC+AGG - chr4_1:85435443-85435462 None:intergenic 55.0%
TGTGCCTGCTCAGGTTCTCT+TGG + chr4_1:85435472-85435491 Msa0580390:three_prime_UTR 55.0%
TCTCTTGGATTCCCTACGCC+GGG + chr4_1:85435487-85435506 Msa0580390:three_prime_UTR 55.0%
CATCAAATTGCACCCGGCGT+AGG - chr4_1:85435502-85435521 None:intergenic 55.0%
TGATCCAAGGCTTGCACGAG+GGG + chr4_1:85435526-85435545 Msa0580390:three_prime_UTR 55.0%
CTTCAGCCGGAGTTGCTCGT+CGG + chr4_1:85433601-85433620 Msa0580390:CDS 60.0%
GCCTTATGCGCCTTGTGTGG+TGG + chr4_1:85434901-85434920 Msa0580390:three_prime_UTR 60.0%
GCCACCACACAAGGCGCATA+AGG - chr4_1:85434905-85434924 None:intergenic 60.0%
TATGCGCCTTGTGTGGTGGC+AGG + chr4_1:85434905-85434924 Msa0580390:three_prime_UTR 60.0%
TGGCTTCCTGCCACCACACA+AGG - chr4_1:85434914-85434933 None:intergenic 60.0%
! GAGATGGGTGGATTCTCGCG+AGG + chr4_1:85435337-85435356 Msa0580390:three_prime_UTR 60.0%
TTCTCGCGAGGGTCTGTGTG+AGG + chr4_1:85435349-85435368 Msa0580390:three_prime_UTR 60.0%
AGAACCTGAGCAGGCACAGC+TGG - chr4_1:85435470-85435489 None:intergenic 60.0%
CTTCAGCCGGAGTTGCTCGT+CGG + chr4_1:85433601-85433620 Msa0580390:CDS 60.0%
GCCTTATGCGCCTTGTGTGG+TGG + chr4_1:85434901-85434920 Msa0580390:three_prime_UTR 60.0%
GCCACCACACAAGGCGCATA+AGG - chr4_1:85434905-85434924 None:intergenic 60.0%
TATGCGCCTTGTGTGGTGGC+AGG + chr4_1:85434905-85434924 Msa0580390:three_prime_UTR 60.0%
TGGCTTCCTGCCACCACACA+AGG - chr4_1:85434914-85434933 None:intergenic 60.0%
! GAGATGGGTGGATTCTCGCG+AGG + chr4_1:85435337-85435356 Msa0580390:three_prime_UTR 60.0%
TTCTCGCGAGGGTCTGTGTG+AGG + chr4_1:85435349-85435368 Msa0580390:three_prime_UTR 60.0%
AGAACCTGAGCAGGCACAGC+TGG - chr4_1:85435470-85435489 None:intergenic 60.0%
TGACGGCCGACGAGCAACTC+CGG - chr4_1:85433610-85433629 None:intergenic 65.0%
CTTGACAGGGCCAGCGCTGT+TGG - chr4_1:85434972-85434991 None:intergenic 65.0%
AGCACCCCTCGTGCAAGCCT+TGG - chr4_1:85435533-85435552 None:intergenic 65.0%
! AAGGCTTGCACGAGGGGTGC+TGG + chr4_1:85435532-85435551 Msa0580390:three_prime_UTR 65.0%
!! AGGCTTGCACGAGGGGTGCT+GGG + chr4_1:85435533-85435552 Msa0580390:three_prime_UTR 65.0%
TGACGGCCGACGAGCAACTC+CGG - chr4_1:85433610-85433629 None:intergenic 65.0%
CTTGACAGGGCCAGCGCTGT+TGG - chr4_1:85434972-85434991 None:intergenic 65.0%
AGCACCCCTCGTGCAAGCCT+TGG - chr4_1:85435533-85435552 None:intergenic 65.0%
! AAGGCTTGCACGAGGGGTGC+TGG + chr4_1:85435532-85435551 Msa0580390:three_prime_UTR 65.0%
!! AGGCTTGCACGAGGGGTGCT+GGG + chr4_1:85435533-85435552 Msa0580390:three_prime_UTR 65.0%
! GGCTGGGAGTGTGCCTGCTG+AGG + chr4_1:85435427-85435446 Msa0580390:three_prime_UTR 70.0%
! GGCACAGCTGGCAGGAGCAC+TGG - chr4_1:85435458-85435477 None:intergenic 70.0%
CCTGAGCAGGCACAGCTGGC+AGG - chr4_1:85435466-85435485 None:intergenic 70.0%
CCTGCCAGCTGTGCCTGCTC+AGG + chr4_1:85435463-85435482 Msa0580390:three_prime_UTR 70.0%
! GGCTGGGAGTGTGCCTGCTG+AGG + chr4_1:85435427-85435446 Msa0580390:three_prime_UTR 70.0%
! GGCACAGCTGGCAGGAGCAC+TGG - chr4_1:85435458-85435477 None:intergenic 70.0%
CCTGAGCAGGCACAGCTGGC+AGG - chr4_1:85435466-85435485 None:intergenic 70.0%
CCTGCCAGCTGTGCCTGCTC+AGG + chr4_1:85435463-85435482 Msa0580390:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 85433477 85435923 85433477 ID=Msa0580390;Name=Msa0580390
chr4_1 mRNA 85433477 85435923 85433477 ID=Msa0580390-mRNA-1;Parent=Msa0580390;Name=Msa0580390-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|0|0|2|1231|63
chr4_1 exon 85433477 85433661 85433477 ID=Msa0580390-mRNA-1:exon:31396;Parent=Msa0580390-mRNA-1
chr4_1 exon 85434686 85435923 85434686 ID=Msa0580390-mRNA-1:exon:31397;Parent=Msa0580390-mRNA-1
chr4_1 CDS 85433477 85433661 85433477 ID=Msa0580390-mRNA-1:cds;Parent=Msa0580390-mRNA-1
chr4_1 CDS 85434686 85434692 85434686 ID=Msa0580390-mRNA-1:cds;Parent=Msa0580390-mRNA-1
chr4_1 three_prime_UTR 85434693 85435923 85434693 ID=Msa0580390-mRNA-1:three_prime_utr;Parent=Msa0580390-mRNA-1
Gene Sequence

>Msa0580390

ATGAGAAATTTTCGGATTCTAATCACACAGAAAAAAAAATCACAAGCCCAATCCACTTCCGTTGAAGAAGCCTACTGTATGTTAGATCGGAAACAAGTTGGATTGGTGTCCGCACTCAACTCAACTTCAGCCGGAGTTGCTCGTCGGCCGTCAGAAACACTGACGAAGTCATCAACATCATCCAGGCATTAA
Protein sequence

>Msa0580390

MRNFRILITQKKKSQAQSTSVEEAYCMLDRKQVGLVSALNSTSAGVARRPSETLTKSSTSSRH*