Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307790 | sp|Q54VX4|MCFJ_DICDI | 29.444 | 360 | 210 | 13 | 10 | 346 | 7 | 345 | 5.60e-38 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307790 | A0A072TMM7 | 99.432 | 352 | 2 | 0 | 1 | 352 | 1 | 352 | 0.0 | 718 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053640 | Msa1307790 | 0.830502 | 2.833491e-55 | -8.615850e-47 |
| Msa1265520 | Msa1307790 | -0.814570 | 1.440493e-51 | -8.615850e-47 |
| Msa1267830 | Msa1307790 | 0.800362 | 1.493521e-48 | -8.615850e-47 |
| Msa0307380 | Msa1307790 | 0.815053 | 1.125597e-51 | -8.615850e-47 |
| Msa0312640 | Msa1307790 | 0.860586 | 1.863242e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307790 | MtrunA17_Chr8g0343381 | 99.432 | 352 | 2 | 0 | 1 | 352 | 1 | 352 | 0.0 | 718 |
| Msa1307790 | MtrunA17_Chr3g0136041 | 64.689 | 354 | 114 | 4 | 1 | 349 | 1 | 348 | 3.14e-157 | 444 |
| Msa1307790 | MtrunA17_Chr7g0219891 | 46.526 | 331 | 149 | 4 | 21 | 348 | 9 | 314 | 9.51e-97 | 290 |
| Msa1307790 | MtrunA17_Chr6g0455381 | 45.075 | 335 | 154 | 6 | 21 | 351 | 5 | 313 | 8.62e-94 | 282 |
| Msa1307790 | MtrunA17_Chr2g0293621 | 40.729 | 329 | 168 | 5 | 21 | 346 | 17 | 321 | 2.97e-84 | 258 |
| Msa1307790 | MtrunA17_Chr1g0201361 | 26.797 | 306 | 166 | 7 | 43 | 348 | 61 | 308 | 4.79e-26 | 106 |
| Msa1307790 | MtrunA17_Chr8g0383321 | 26.797 | 306 | 166 | 8 | 43 | 348 | 62 | 309 | 1.44e-21 | 94.0 |
| Msa1307790 | MtrunA17_Chr8g0383321 | 26.500 | 200 | 117 | 6 | 30 | 221 | 128 | 305 | 8.32e-11 | 62.4 |
| Msa1307790 | MtrunA17_Chr5g0431531 | 27.667 | 300 | 165 | 7 | 47 | 338 | 53 | 308 | 3.33e-21 | 92.8 |
| Msa1307790 | MtrunA17_Chr5g0431531 | 30.928 | 194 | 101 | 6 | 41 | 218 | 135 | 311 | 2.31e-12 | 67.0 |
| Msa1307790 | MtrunA17_Chr4g0063561 | 24.921 | 317 | 195 | 8 | 34 | 348 | 123 | 398 | 6.72e-21 | 92.8 |
| Msa1307790 | MtrunA17_Chr4g0004571 | 23.962 | 313 | 201 | 7 | 40 | 350 | 21 | 298 | 3.27e-17 | 81.3 |
| Msa1307790 | MtrunA17_Chr8g0386871 | 26.101 | 318 | 185 | 10 | 27 | 341 | 314 | 584 | 1.69e-16 | 80.9 |
| Msa1307790 | MtrunA17_Chr1g0149111 | 24.324 | 296 | 182 | 8 | 49 | 343 | 155 | 409 | 3.81e-16 | 79.0 |
| Msa1307790 | MtrunA17_Chr1g0149111 | 25.581 | 215 | 120 | 4 | 132 | 346 | 140 | 314 | 6.12e-12 | 66.2 |
| Msa1307790 | MtrunA17_Chr4g0046981 | 24.290 | 317 | 199 | 11 | 37 | 343 | 14 | 299 | 1.66e-15 | 76.3 |
| Msa1307790 | MtrunA17_Chr4g0006851 | 28.571 | 189 | 114 | 5 | 35 | 221 | 189 | 358 | 7.12e-15 | 75.1 |
| Msa1307790 | MtrunA17_Chr7g0242311 | 27.442 | 215 | 130 | 6 | 35 | 247 | 187 | 377 | 7.32e-15 | 75.1 |
| Msa1307790 | MtrunA17_Chr7g0269701 | 23.432 | 303 | 189 | 8 | 49 | 343 | 38 | 305 | 1.19e-14 | 73.9 |
| Msa1307790 | MtrunA17_Chr7g0240341 | 24.828 | 290 | 179 | 7 | 62 | 348 | 65 | 318 | 1.55e-14 | 73.6 |
| Msa1307790 | MtrunA17_Chr8g0347451 | 30.846 | 201 | 124 | 7 | 35 | 221 | 154 | 353 | 2.96e-13 | 70.1 |
| Msa1307790 | MtrunA17_Chr8g0347451 | 23.929 | 280 | 174 | 6 | 77 | 343 | 99 | 352 | 6.03e-12 | 66.2 |
| Msa1307790 | MtrunA17_Chr2g0331771 | 25.818 | 275 | 166 | 7 | 48 | 320 | 171 | 409 | 4.80e-13 | 69.7 |
| Msa1307790 | MtrunA17_Chr5g0423111 | 30.097 | 206 | 112 | 8 | 49 | 239 | 135 | 323 | 5.60e-13 | 69.3 |
| Msa1307790 | MtrunA17_Chr5g0423111 | 26.159 | 302 | 182 | 9 | 49 | 343 | 37 | 304 | 8.98e-12 | 65.5 |
| Msa1307790 | MtrunA17_Chr8g0372531 | 25.080 | 311 | 196 | 11 | 47 | 347 | 28 | 311 | 6.16e-13 | 68.6 |
| Msa1307790 | MtrunA17_Chr5g0396801 | 29.500 | 200 | 126 | 7 | 35 | 221 | 141 | 338 | 2.43e-12 | 67.4 |
| Msa1307790 | MtrunA17_Chr5g0396801 | 25.180 | 278 | 171 | 6 | 75 | 341 | 84 | 335 | 2.26e-11 | 64.3 |
| Msa1307790 | MtrunA17_Chr1g0195101 | 24.759 | 311 | 175 | 10 | 49 | 343 | 35 | 302 | 9.03e-12 | 65.1 |
| Msa1307790 | MtrunA17_Chr2g0296061 | 23.929 | 280 | 168 | 9 | 73 | 339 | 72 | 319 | 1.18e-11 | 65.1 |
| Msa1307790 | MtrunA17_Chr2g0296061 | 28.191 | 188 | 121 | 7 | 41 | 216 | 134 | 319 | 5.77e-11 | 63.2 |
| Msa1307790 | MtrunA17_Chr2g0328891 | 30.921 | 152 | 85 | 4 | 74 | 223 | 221 | 354 | 1.20e-11 | 65.1 |
| Msa1307790 | MtrunA17_Chr3g0137941 | 26.484 | 219 | 113 | 5 | 124 | 342 | 123 | 293 | 1.25e-11 | 65.5 |
| Msa1307790 | MtrunA17_Chr7g0252401 | 29.319 | 191 | 114 | 5 | 34 | 219 | 303 | 477 | 1.97e-11 | 65.1 |
| Msa1307790 | MtrunA17_Chr4g0028531 | 24.830 | 294 | 161 | 10 | 44 | 322 | 33 | 281 | 2.06e-11 | 64.3 |
| Msa1307790 | MtrunA17_Chr4g0067231 | 29.319 | 191 | 113 | 8 | 40 | 214 | 134 | 318 | 2.55e-11 | 63.9 |
| Msa1307790 | MtrunA17_Chr6g0463351 | 30.857 | 175 | 114 | 5 | 44 | 218 | 171 | 338 | 5.87e-11 | 63.2 |
| Msa1307790 | MtrunA17_Chr8g0385571 | 26.977 | 215 | 120 | 4 | 132 | 346 | 228 | 405 | 5.90e-11 | 63.5 |
| Msa1307790 | MtrunA17_Chr3g0135861 | 30.189 | 159 | 95 | 4 | 67 | 225 | 189 | 331 | 8.15e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307790 | AT1G72820.1 | 72.727 | 352 | 84 | 5 | 1 | 349 | 1 | 343 | 5.07e-180 | 503 |
| Msa1307790 | AT1G72820.2 | 72.727 | 352 | 84 | 5 | 1 | 349 | 1 | 343 | 5.07e-180 | 503 |
| Msa1307790 | AT5G26200.1 | 62.242 | 339 | 107 | 3 | 15 | 349 | 21 | 342 | 6.01e-149 | 424 |
| Msa1307790 | AT5G15640.1 | 47.720 | 329 | 144 | 6 | 21 | 345 | 16 | 320 | 1.03e-95 | 288 |
| Msa1307790 | AT5G15640.2 | 47.561 | 328 | 143 | 7 | 22 | 345 | 11 | 313 | 6.86e-93 | 280 |
| Msa1307790 | AT1G34065.1 | 26.087 | 345 | 189 | 11 | 13 | 349 | 55 | 341 | 1.04e-22 | 97.8 |
| Msa1307790 | AT1G34065.2 | 26.623 | 308 | 167 | 9 | 43 | 349 | 85 | 334 | 1.04e-22 | 97.8 |
| Msa1307790 | AT4G11440.1 | 26.667 | 315 | 189 | 8 | 29 | 341 | 326 | 600 | 7.56e-22 | 97.4 |
| Msa1307790 | AT4G11440.2 | 26.667 | 315 | 189 | 8 | 29 | 341 | 326 | 600 | 7.56e-22 | 97.4 |
| Msa1307790 | AT4G39460.2 | 26.144 | 306 | 168 | 9 | 43 | 348 | 68 | 315 | 1.35e-19 | 88.6 |
| Msa1307790 | AT4G39460.1 | 26.144 | 306 | 168 | 9 | 43 | 348 | 68 | 315 | 1.35e-19 | 88.6 |
| Msa1307790 | AT4G39460.3 | 26.144 | 306 | 168 | 9 | 43 | 348 | 68 | 315 | 1.35e-19 | 88.6 |
| Msa1307790 | AT2G37890.1 | 26.502 | 283 | 162 | 8 | 68 | 343 | 88 | 331 | 5.67e-19 | 87.0 |
| Msa1307790 | AT1G07030.1 | 27.273 | 319 | 185 | 7 | 31 | 343 | 38 | 315 | 1.25e-18 | 85.9 |
| Msa1307790 | AT2G30160.1 | 27.815 | 302 | 176 | 9 | 47 | 343 | 56 | 320 | 3.26e-18 | 84.7 |
| Msa1307790 | AT2G30160.1 | 31.606 | 193 | 113 | 5 | 37 | 218 | 134 | 318 | 1.68e-13 | 70.9 |
| Msa1307790 | AT2G30160.1 | 26.066 | 211 | 116 | 5 | 132 | 342 | 43 | 213 | 2.01e-12 | 67.8 |
| Msa1307790 | AT3G53940.1 | 26.354 | 277 | 160 | 7 | 73 | 343 | 121 | 359 | 8.89e-16 | 78.2 |
| Msa1307790 | AT3G20240.1 | 25.914 | 301 | 172 | 8 | 34 | 320 | 52 | 315 | 7.09e-15 | 75.1 |
| Msa1307790 | AT3G20240.1 | 29.444 | 180 | 105 | 6 | 41 | 214 | 169 | 332 | 6.33e-13 | 69.3 |
| Msa1307790 | AT4G32400.1 | 23.585 | 318 | 200 | 9 | 34 | 349 | 114 | 390 | 8.51e-15 | 75.5 |
| Msa1307790 | AT1G79900.1 | 24.746 | 295 | 178 | 8 | 48 | 342 | 31 | 281 | 7.00e-14 | 71.6 |
| Msa1307790 | AT1G79900.1 | 29.050 | 179 | 112 | 3 | 44 | 222 | 121 | 284 | 1.01e-11 | 65.5 |
| Msa1307790 | AT5G66380.1 | 24.756 | 307 | 195 | 9 | 45 | 343 | 22 | 300 | 2.33e-13 | 70.5 |
| Msa1307790 | AT5G01340.1 | 28.041 | 296 | 150 | 12 | 44 | 322 | 28 | 277 | 4.61e-13 | 69.3 |
| Msa1307790 | AT1G25380.1 | 25.243 | 309 | 177 | 9 | 49 | 343 | 37 | 305 | 1.05e-12 | 68.9 |
| Msa1307790 | AT1G25380.2 | 25.243 | 309 | 177 | 9 | 49 | 343 | 37 | 305 | 1.05e-12 | 68.9 |
| Msa1307790 | AT3G51870.1 | 25.592 | 211 | 130 | 4 | 35 | 243 | 191 | 376 | 1.21e-12 | 68.9 |
| Msa1307790 | AT5G48970.1 | 23.782 | 349 | 207 | 10 | 19 | 339 | 12 | 329 | 1.37e-12 | 68.6 |
| Msa1307790 | AT2G47490.1 | 25.325 | 308 | 176 | 11 | 49 | 343 | 33 | 299 | 2.46e-12 | 67.4 |
| Msa1307790 | AT5G51050.1 | 23.750 | 320 | 201 | 9 | 25 | 342 | 215 | 493 | 4.28e-12 | 67.4 |
| Msa1307790 | AT5G48970.2 | 24.549 | 277 | 173 | 7 | 73 | 339 | 8 | 258 | 4.65e-12 | 65.9 |
| Msa1307790 | AT5G48970.2 | 27.193 | 228 | 120 | 9 | 11 | 214 | 51 | 256 | 3.47e-11 | 63.5 |
| Msa1307790 | AT3G54110.1 | 25.902 | 305 | 175 | 10 | 49 | 342 | 31 | 295 | 9.04e-12 | 65.5 |
| Msa1307790 | AT1G74240.1 | 24.611 | 321 | 182 | 13 | 29 | 322 | 27 | 314 | 1.31e-11 | 65.5 |
| Msa1307790 | AT5G46800.2 | 27.064 | 218 | 121 | 7 | 132 | 341 | 109 | 296 | 1.72e-11 | 64.7 |
| Msa1307790 | AT5G46800.3 | 27.064 | 218 | 121 | 7 | 132 | 341 | 109 | 296 | 1.72e-11 | 64.7 |
| Msa1307790 | AT5G46800.1 | 27.064 | 218 | 121 | 7 | 132 | 341 | 109 | 296 | 1.72e-11 | 64.7 |
| Msa1307790 | AT1G14560.1 | 21.523 | 302 | 193 | 7 | 51 | 341 | 49 | 317 | 2.73e-11 | 64.3 |
| Msa1307790 | AT4G01100.3 | 28.436 | 211 | 134 | 8 | 35 | 231 | 95 | 302 | 3.52e-11 | 63.9 |
| Msa1307790 | AT1G74240.2 | 25.168 | 298 | 168 | 12 | 47 | 322 | 2 | 266 | 5.02e-11 | 63.5 |
| Msa1307790 | AT4G01100.1 | 28.436 | 211 | 134 | 8 | 35 | 231 | 145 | 352 | 6.13e-11 | 63.5 |
| Msa1307790 | AT4G01100.2 | 28.436 | 211 | 134 | 8 | 35 | 231 | 159 | 366 | 8.54e-11 | 63.2 |
Find 97 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGGTTTGTATAGAGGTTT+TGG | 0.169259 | 8_4:+3714601 | Msa1307790:CDS |
| CTGTTGCACAAAGGATGGTT+TGG | 0.306479 | 8_4:+3714677 | Msa1307790:CDS |
| CGGGTTTGGTACTTCGTTGA+TGG | 0.314901 | 8_4:+3714285 | Msa1307790:CDS |
| GGAACTGCTACTGTTGGTTT+TGG | 0.344381 | 8_4:+3714367 | Msa1307790:CDS |
| GATGCAGACGGTTAGAAGTT+TGG | 0.354056 | 8_4:+3714930 | Msa1307790:CDS |
| GCAATTGCTAATGCGGTTGC+TGG | 0.368970 | 8_4:+3714412 | Msa1307790:CDS |
| TGTTGCACAAAGGATGGTTT+GGG | 0.377065 | 8_4:+3714678 | Msa1307790:CDS |
| AGAGCGTTGTATCGCGGGTT+TGG | 0.379134 | 8_4:+3714271 | Msa1307790:CDS |
| TCATCTGTAAGATATGTTAA+TGG | 0.389810 | 8_4:+3714538 | Msa1307790:CDS |
| TAAAACCTCTTGATTCTTTG+CGG | 0.394234 | 8_4:-3715064 | None:intergenic |
| GGTTGGATGGCTTGTTATAG+AGG | 0.399503 | 8_4:+3714964 | Msa1307790:CDS |
| ATGGCTTGTTATAGAGGATT+GGG | 0.407744 | 8_4:+3714970 | Msa1307790:CDS |
| AGGATGGTTTGGGGTGGAGT+TGG | 0.412562 | 8_4:+3714688 | Msa1307790:CDS |
| ATGTTCCAGCTGAAATTGAT+TGG | 0.414525 | 8_4:+3714083 | Msa1307790:CDS |
| GGTCCTAGGGGTTTGTATAG+AGG | 0.420101 | 8_4:+3714595 | Msa1307790:CDS |
| TGCTTTGATTACTATGCCAT+TGG | 0.422067 | 8_4:+3714843 | Msa1307790:CDS |
| TACCTTGAACCATCAACCTT+TGG | 0.422147 | 8_4:-3714489 | None:intergenic |
| ACAAGGCTGCAGGTCTTAGA+TGG | 0.426779 | 8_4:+3714877 | Msa1307790:CDS |
| GATGGCTTGTTATAGAGGAT+TGG | 0.434742 | 8_4:+3714969 | Msa1307790:CDS |
| TGAGGAAGAGGTAGAGTCAG+AGG | 0.443657 | 8_4:+3714051 | Msa1307790:CDS |
| GGTTTAGAGCGTTGTATCGC+GGG | 0.444190 | 8_4:+3714266 | Msa1307790:CDS |
| GACGGTTAGAAGTTTGGTTA+AGG | 0.449500 | 8_4:+3714936 | Msa1307790:CDS |
| GGTTAAGGAAGGTGGTTGGA+TGG | 0.449945 | 8_4:+3714951 | Msa1307790:CDS |
| TTGTGAGAACGGATGGTCCT+AGG | 0.450225 | 8_4:+3714581 | Msa1307790:CDS |
| TTGTAATTCAAGTGATCCTA+AGG | 0.453755 | 8_4:+3714513 | Msa1307790:CDS |
| TGTTGTGAGCCAAAGGTTGA+TGG | 0.459063 | 8_4:+3714480 | Msa1307790:CDS |
| GCCATATACAACGCCCTAGC+CGG | 0.460196 | 8_4:-3714316 | None:intergenic |
| AGAAGTTTGGTTAAGGAAGG+TGG | 0.466995 | 8_4:+3714943 | Msa1307790:CDS |
| ATGCTCCTTCAAATGCAGTA+TGG | 0.467579 | 8_4:+3714641 | Msa1307790:CDS |
| TTCGTTGATGGGTACGATCC+CGG | 0.468966 | 8_4:+3714297 | Msa1307790:CDS |
| CTGTTGTTGTGTTGAAAACT+AGG | 0.469626 | 8_4:+3714179 | Msa1307790:CDS |
| AGGAAAATTGTGAGAACGGA+TGG | 0.476248 | 8_4:+3714574 | Msa1307790:CDS |
| GGGTTTGGTACTTCGTTGAT+GGG | 0.476339 | 8_4:+3714286 | Msa1307790:CDS |
| GTTAGAAGTTTGGTTAAGGA+AGG | 0.488369 | 8_4:+3714940 | Msa1307790:CDS |
| GCCCACCATACTGCATTTGA+AGG | 0.489267 | 8_4:-3714646 | None:intergenic |
| CTTTGGCTCACAACATCAAT+CGG | 0.491438 | 8_4:-3714472 | None:intergenic |
| AAAACTGTTATGGCAGTTCA+GGG | 0.494556 | 8_4:+3714790 | Msa1307790:CDS |
| AGCCAAAGGTTGATGGTTCA+AGG | 0.498610 | 8_4:+3714487 | Msa1307790:CDS |
| CTCCCCTTTAATCAACGAAA+AGG | 0.499278 | 8_4:-3714242 | None:intergenic |
| AGCAGTTCCTACATTACTCT+TGG | 0.499952 | 8_4:-3714353 | None:intergenic |
| GTCTTAGATGGCGATGAGAA+TGG | 0.502262 | 8_4:+3714889 | Msa1307790:CDS |
| TAGAGGATTGGGACCAAGAT+GGG | 0.503368 | 8_4:+3714981 | Msa1307790:CDS |
| CCATATACAACGCCCTAGCC+GGG | 0.504449 | 8_4:-3714315 | None:intergenic |
| TGTGAGAACGGATGGTCCTA+GGG | 0.509331 | 8_4:+3714582 | Msa1307790:CDS |
| TTTCGTTGATTAAAGGGGAG+GGG | 0.510089 | 8_4:+3714245 | Msa1307790:CDS |
| AACGACATTGAAGCCCATCT+TGG | 0.510946 | 8_4:-3714994 | None:intergenic |
| TGATGGGTACGATCCCGGCT+AGG | 0.513383 | 8_4:+3714302 | Msa1307790:CDS |
| ATTTGCCAATCAATTTCAGC+TGG | 0.515337 | 8_4:-3714088 | None:intergenic |
| TTTGAGTGTGAATGAGGAAG+AGG | 0.516208 | 8_4:+3714039 | Msa1307790:CDS |
| GGAATCAGTGCAGCAATGGC+AGG | 0.517764 | 8_4:+3714811 | Msa1307790:CDS |
| ATATTCTGTTGCACAAAGGA+TGG | 0.521296 | 8_4:+3714672 | Msa1307790:CDS |
| GATGGGTACGATCCCGGCTA+GGG | 0.521692 | 8_4:+3714303 | Msa1307790:CDS |
| CTTTAGCAGCTCAGCTTGTG+TGG | 0.529736 | 8_4:+3714446 | Msa1307790:CDS |
| TCCTTCAAATGCAGTATGGT+GGG | 0.530664 | 8_4:+3714645 | Msa1307790:CDS |
| GTTTGGTTAAGGAAGGTGGT+TGG | 0.535300 | 8_4:+3714947 | Msa1307790:CDS |
| TACAATCAAGACAAGGCTGC+AGG | 0.537518 | 8_4:+3714867 | Msa1307790:CDS |
| AATGTAGGAACTGCTACTGT+TGG | 0.541302 | 8_4:+3714361 | Msa1307790:CDS |
| GAGGTTACCAAGAGTAATGT+AGG | 0.546410 | 8_4:+3714346 | Msa1307790:CDS |
| ACTTGAGTAACAAGAAAGGT+GGG | 0.552159 | 8_4:+3714716 | Msa1307790:CDS |
| TATCTTACAGATGAACCCTT+AGG | 0.552777 | 8_4:-3714529 | None:intergenic |
| GGAAGTGACAACAACAATGG+AGG | 0.554499 | 8_4:+3714742 | Msa1307790:CDS |
| CTTGTCTTGATTGTATCCAA+TGG | 0.562754 | 8_4:-3714859 | None:intergenic |
| CTCCTTCAAATGCAGTATGG+TGG | 0.563611 | 8_4:+3714644 | Msa1307790:CDS |
| TACTTGAGTAACAAGAAAGG+TGG | 0.572354 | 8_4:+3714715 | Msa1307790:CDS |
| TTAGCAATTGCAGCAGCCGT+CGG | 0.572422 | 8_4:-3714400 | None:intergenic |
| GGCGATGAGAATGGCCGTCG+TGG | 0.574613 | 8_4:+3714898 | Msa1307790:CDS |
| TCAGGGAATCAGTGCAGCAA+TGG | 0.574833 | 8_4:+3714807 | Msa1307790:CDS |
| GGCTGCTGCAATTGCTAATG+CGG | 0.580901 | 8_4:+3714405 | Msa1307790:CDS |
| AATGGATTTGAGTGTGAATG+AGG | 0.583175 | 8_4:+3714033 | None:intergenic |
| GGGTTTAGAGCGTTGTATCG+CGG | 0.584544 | 8_4:+3714265 | Msa1307790:CDS |
| GTTGTATATGGCAGCGCTTG+AGG | 0.586997 | 8_4:+3714327 | Msa1307790:CDS |
| GAAGTGACAACAACAATGGA+GGG | 0.589871 | 8_4:+3714743 | Msa1307790:CDS |
| AGGGGCTAATGTGTTGAGGC+CGG | 0.590691 | 8_4:+3714762 | Msa1307790:CDS |
| ATAGAGGATTGGGACCAAGA+TGG | 0.596480 | 8_4:+3714980 | Msa1307790:CDS |
| TGTAATTCAAGTGATCCTAA+GGG | 0.603205 | 8_4:+3714514 | Msa1307790:CDS |
| GTTGCACAAAGGATGGTTTG+GGG | 0.609426 | 8_4:+3714679 | Msa1307790:CDS |
| CGATTGATGTTGTGAGCCAA+AGG | 0.611253 | 8_4:+3714473 | Msa1307790:CDS |
| CTTCATATTCTGTTGCACAA+AGG | 0.611809 | 8_4:+3714668 | Msa1307790:CDS |
| TATTACTTGAGTAACAAGAA+AGG | 0.614289 | 8_4:+3714712 | Msa1307790:CDS |
| CCCTTTAATCAACGAAAAGG+CGG | 0.617823 | 8_4:-3714239 | None:intergenic |
| GCTTTCCGCAAAGAATCAAG+AGG | 0.618949 | 8_4:+3715059 | Msa1307790:CDS |
| AAACCTCTATACAAACCCCT+AGG | 0.620850 | 8_4:-3714598 | None:intergenic |
| AGTAACAAGAAAGGTGGGGA+GGG | 0.623934 | 8_4:+3714721 | Msa1307790:CDS |
| ATCAGTGCAGCAATGGCAGG+AGG | 0.625647 | 8_4:+3714814 | Msa1307790:CDS |
| GAGGGAAGTGACAACAACAA+TGG | 0.626306 | 8_4:+3714739 | Msa1307790:CDS |
| GCACAAAGGATGGTTTGGGG+TGG | 0.629155 | 8_4:+3714682 | Msa1307790:CDS |
| GAGTAACAAGAAAGGTGGGG+AGG | 0.639195 | 8_4:+3714720 | Msa1307790:CDS |
| CTTGAGTAACAAGAAAGGTG+GGG | 0.640700 | 8_4:+3714717 | Msa1307790:CDS |
| ATGGAGGGGCTAATGTGTTG+AGG | 0.647603 | 8_4:+3714758 | Msa1307790:CDS |
| CTAACCGTCTGCATCACTGT+TGG | 0.653039 | 8_4:-3714922 | None:intergenic |
| TGCGGTTGCTGGTTTGACTG+CGG | 0.661120 | 8_4:+3714423 | Msa1307790:CDS |
| GCATCACTGTTGGTCCACGA+CGG | 0.662402 | 8_4:-3714912 | None:intergenic |
| GTGAGAACGGATGGTCCTAG+GGG | 0.680233 | 8_4:+3714583 | Msa1307790:CDS |
| CATTGGATACAATCAAGACA+AGG | 0.683298 | 8_4:+3714860 | Msa1307790:CDS |
| CAGAAAACAAAGCAGCACCG+AGG | 0.690959 | 8_4:-3714135 | None:intergenic |
| TGGACCAACAGTGATGCAGA+CGG | 0.713938 | 8_4:+3714918 | Msa1307790:CDS |
| AAGTGACAACAACAATGGAG+GGG | 0.716540 | 8_4:+3714744 | Msa1307790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TCATCTGTAAGATATGTTAA+TGG | + | chr8_4:3714538-3714557 | Msa1307790:CDS | 25.0% |
| !!! | TTAATGGTATTGATGCTTTT+AGG | + | chr8_4:3714554-3714573 | Msa1307790:CDS | 25.0% |
| !!! | TTTTAGGAAAATTGTGAGAA+CGG | + | chr8_4:3714570-3714589 | Msa1307790:CDS | 25.0% |
| ! | TATTACTTGAGTAACAAGAA+AGG | + | chr8_4:3714712-3714731 | Msa1307790:CDS | 25.0% |
| ! | TCATCTGTAAGATATGTTAA+TGG | + | chr8_4:3714538-3714557 | Msa1307790:CDS | 25.0% |
| !!! | TTAATGGTATTGATGCTTTT+AGG | + | chr8_4:3714554-3714573 | Msa1307790:CDS | 25.0% |
| !!! | TTTTAGGAAAATTGTGAGAA+CGG | + | chr8_4:3714570-3714589 | Msa1307790:CDS | 25.0% |
| ! | TATTACTTGAGTAACAAGAA+AGG | + | chr8_4:3714712-3714731 | Msa1307790:CDS | 25.0% |
| ! | AAATCCAAGTTTTTCTTCCT+CGG | + | chr8_4:3714118-3714137 | Msa1307790:CDS | 30.0% |
| TTGTAATTCAAGTGATCCTA+AGG | + | chr8_4:3714513-3714532 | Msa1307790:CDS | 30.0% | |
| TGTAATTCAAGTGATCCTAA+GGG | + | chr8_4:3714514-3714533 | Msa1307790:CDS | 30.0% | |
| !! | CAACCTATGAGCTTTTAAAA+CGG | + | chr8_4:3715037-3715056 | Msa1307790:CDS | 30.0% |
| TAAAACCTCTTGATTCTTTG+CGG | - | chr8_4:3715067-3715086 | None:intergenic | 30.0% | |
| ! | AAATCCAAGTTTTTCTTCCT+CGG | + | chr8_4:3714118-3714137 | Msa1307790:CDS | 30.0% |
| TTGTAATTCAAGTGATCCTA+AGG | + | chr8_4:3714513-3714532 | Msa1307790:CDS | 30.0% | |
| TGTAATTCAAGTGATCCTAA+GGG | + | chr8_4:3714514-3714533 | Msa1307790:CDS | 30.0% | |
| !! | CAACCTATGAGCTTTTAAAA+CGG | + | chr8_4:3715037-3715056 | Msa1307790:CDS | 30.0% |
| TAAAACCTCTTGATTCTTTG+CGG | - | chr8_4:3715067-3715086 | None:intergenic | 30.0% | |
| ATGTTCCAGCTGAAATTGAT+TGG | + | chr8_4:3714083-3714102 | Msa1307790:CDS | 35.0% | |
| ATTTGCCAATCAATTTCAGC+TGG | - | chr8_4:3714091-3714110 | None:intergenic | 35.0% | |
| !! | CTAGTTTTCAACACAACAAC+AGG | - | chr8_4:3714181-3714200 | None:intergenic | 35.0% |
| CTGTTGTTGTGTTGAAAACT+AGG | + | chr8_4:3714179-3714198 | Msa1307790:CDS | 35.0% | |
| !! | TTTTCGTTGATTAAAGGGGA+GGG | + | chr8_4:3714244-3714263 | Msa1307790:CDS | 35.0% |
| TATCTTACAGATGAACCCTT+AGG | - | chr8_4:3714532-3714551 | None:intergenic | 35.0% | |
| !!! | GTATAGAGGTTTTGGGATAT+CGG | + | chr8_4:3714609-3714628 | Msa1307790:CDS | 35.0% |
| CTTCATATTCTGTTGCACAA+AGG | + | chr8_4:3714668-3714687 | Msa1307790:CDS | 35.0% | |
| ATATTCTGTTGCACAAAGGA+TGG | + | chr8_4:3714672-3714691 | Msa1307790:CDS | 35.0% | |
| TACTTGAGTAACAAGAAAGG+TGG | + | chr8_4:3714715-3714734 | Msa1307790:CDS | 35.0% | |
| ACTTGAGTAACAAGAAAGGT+GGG | + | chr8_4:3714716-3714735 | Msa1307790:CDS | 35.0% | |
| ! | GCCATAACAGTTTTTGTATC+CGG | - | chr8_4:3714784-3714803 | None:intergenic | 35.0% |
| AAAAACTGTTATGGCAGTTC+AGG | + | chr8_4:3714789-3714808 | Msa1307790:CDS | 35.0% | |
| AAAACTGTTATGGCAGTTCA+GGG | + | chr8_4:3714790-3714809 | Msa1307790:CDS | 35.0% | |
| TGCTTTGATTACTATGCCAT+TGG | + | chr8_4:3714843-3714862 | Msa1307790:CDS | 35.0% | |
| CTTGTCTTGATTGTATCCAA+TGG | - | chr8_4:3714862-3714881 | None:intergenic | 35.0% | |
| CATTGGATACAATCAAGACA+AGG | + | chr8_4:3714860-3714879 | Msa1307790:CDS | 35.0% | |
| GTTAGAAGTTTGGTTAAGGA+AGG | + | chr8_4:3714940-3714959 | Msa1307790:CDS | 35.0% | |
| !! | ATGGCTTGTTATAGAGGATT+GGG | + | chr8_4:3714970-3714989 | Msa1307790:CDS | 35.0% |
| !!! | AAGCCGTTTTAAAAGCTCAT+AGG | - | chr8_4:3715043-3715062 | None:intergenic | 35.0% |
| ATGTTCCAGCTGAAATTGAT+TGG | + | chr8_4:3714083-3714102 | Msa1307790:CDS | 35.0% | |
| ATTTGCCAATCAATTTCAGC+TGG | - | chr8_4:3714091-3714110 | None:intergenic | 35.0% | |
| !! | CTAGTTTTCAACACAACAAC+AGG | - | chr8_4:3714181-3714200 | None:intergenic | 35.0% |
| CTGTTGTTGTGTTGAAAACT+AGG | + | chr8_4:3714179-3714198 | Msa1307790:CDS | 35.0% | |
| !! | TTTTCGTTGATTAAAGGGGA+GGG | + | chr8_4:3714244-3714263 | Msa1307790:CDS | 35.0% |
| TATCTTACAGATGAACCCTT+AGG | - | chr8_4:3714532-3714551 | None:intergenic | 35.0% | |
| !!! | GTATAGAGGTTTTGGGATAT+CGG | + | chr8_4:3714609-3714628 | Msa1307790:CDS | 35.0% |
| CTTCATATTCTGTTGCACAA+AGG | + | chr8_4:3714668-3714687 | Msa1307790:CDS | 35.0% | |
| ATATTCTGTTGCACAAAGGA+TGG | + | chr8_4:3714672-3714691 | Msa1307790:CDS | 35.0% | |
| TACTTGAGTAACAAGAAAGG+TGG | + | chr8_4:3714715-3714734 | Msa1307790:CDS | 35.0% | |
| ACTTGAGTAACAAGAAAGGT+GGG | + | chr8_4:3714716-3714735 | Msa1307790:CDS | 35.0% | |
| ! | GCCATAACAGTTTTTGTATC+CGG | - | chr8_4:3714784-3714803 | None:intergenic | 35.0% |
| AAAAACTGTTATGGCAGTTC+AGG | + | chr8_4:3714789-3714808 | Msa1307790:CDS | 35.0% | |
| AAAACTGTTATGGCAGTTCA+GGG | + | chr8_4:3714790-3714809 | Msa1307790:CDS | 35.0% | |
| TGCTTTGATTACTATGCCAT+TGG | + | chr8_4:3714843-3714862 | Msa1307790:CDS | 35.0% | |
| CTTGTCTTGATTGTATCCAA+TGG | - | chr8_4:3714862-3714881 | None:intergenic | 35.0% | |
| CATTGGATACAATCAAGACA+AGG | + | chr8_4:3714860-3714879 | Msa1307790:CDS | 35.0% | |
| GTTAGAAGTTTGGTTAAGGA+AGG | + | chr8_4:3714940-3714959 | Msa1307790:CDS | 35.0% | |
| !! | ATGGCTTGTTATAGAGGATT+GGG | + | chr8_4:3714970-3714989 | Msa1307790:CDS | 35.0% |
| !!! | AAGCCGTTTTAAAAGCTCAT+AGG | - | chr8_4:3715043-3715062 | None:intergenic | 35.0% |
| TTTGAGTGTGAATGAGGAAG+AGG | + | chr8_4:3714039-3714058 | Msa1307790:CDS | 40.0% | |
| !! | ACCGCCTTTTCGTTGATTAA+AGG | + | chr8_4:3714238-3714257 | Msa1307790:CDS | 40.0% |
| CCCTTTAATCAACGAAAAGG+CGG | - | chr8_4:3714242-3714261 | None:intergenic | 40.0% | |
| !! | CCGCCTTTTCGTTGATTAAA+GGG | + | chr8_4:3714239-3714258 | Msa1307790:CDS | 40.0% |
| !! | CGCCTTTTCGTTGATTAAAG+GGG | + | chr8_4:3714240-3714259 | Msa1307790:CDS | 40.0% |
| CTCCCCTTTAATCAACGAAA+AGG | - | chr8_4:3714245-3714264 | None:intergenic | 40.0% | |
| !! | CTTTTCGTTGATTAAAGGGG+AGG | + | chr8_4:3714243-3714262 | Msa1307790:CDS | 40.0% |
| ! | TTTCGTTGATTAAAGGGGAG+GGG | + | chr8_4:3714245-3714264 | Msa1307790:CDS | 40.0% |
| GAGGTTACCAAGAGTAATGT+AGG | + | chr8_4:3714346-3714365 | Msa1307790:CDS | 40.0% | |
| AGCAGTTCCTACATTACTCT+TGG | - | chr8_4:3714356-3714375 | None:intergenic | 40.0% | |
| AATGTAGGAACTGCTACTGT+TGG | + | chr8_4:3714361-3714380 | Msa1307790:CDS | 40.0% | |
| ! | CTTTGGCTCACAACATCAAT+CGG | - | chr8_4:3714475-3714494 | None:intergenic | 40.0% |
| TACCTTGAACCATCAACCTT+TGG | - | chr8_4:3714492-3714511 | None:intergenic | 40.0% | |
| AGGAAAATTGTGAGAACGGA+TGG | + | chr8_4:3714574-3714593 | Msa1307790:CDS | 40.0% | |
| AAACCTCTATACAAACCCCT+AGG | - | chr8_4:3714601-3714620 | None:intergenic | 40.0% | |
| ! | AGGGGTTTGTATAGAGGTTT+TGG | + | chr8_4:3714601-3714620 | Msa1307790:CDS | 40.0% |
| ! | GGGGTTTGTATAGAGGTTTT+GGG | + | chr8_4:3714602-3714621 | Msa1307790:CDS | 40.0% |
| ATGCTCCTTCAAATGCAGTA+TGG | + | chr8_4:3714641-3714660 | Msa1307790:CDS | 40.0% | |
| TCCTTCAAATGCAGTATGGT+GGG | + | chr8_4:3714645-3714664 | Msa1307790:CDS | 40.0% | |
| TGTTGCACAAAGGATGGTTT+GGG | + | chr8_4:3714678-3714697 | Msa1307790:CDS | 40.0% | |
| CTTGAGTAACAAGAAAGGTG+GGG | + | chr8_4:3714717-3714736 | Msa1307790:CDS | 40.0% | |
| GAAGTGACAACAACAATGGA+GGG | + | chr8_4:3714743-3714762 | Msa1307790:CDS | 40.0% | |
| AAGTGACAACAACAATGGAG+GGG | + | chr8_4:3714744-3714763 | Msa1307790:CDS | 40.0% | |
| GCCGGATACAAAAACTGTTA+TGG | + | chr8_4:3714780-3714799 | Msa1307790:CDS | 40.0% | |
| GACGGTTAGAAGTTTGGTTA+AGG | + | chr8_4:3714936-3714955 | Msa1307790:CDS | 40.0% | |
| AGAAGTTTGGTTAAGGAAGG+TGG | + | chr8_4:3714943-3714962 | Msa1307790:CDS | 40.0% | |
| !! | GATGGCTTGTTATAGAGGAT+TGG | + | chr8_4:3714969-3714988 | Msa1307790:CDS | 40.0% |
| TTTGAGTGTGAATGAGGAAG+AGG | + | chr8_4:3714039-3714058 | Msa1307790:CDS | 40.0% | |
| !! | ACCGCCTTTTCGTTGATTAA+AGG | + | chr8_4:3714238-3714257 | Msa1307790:CDS | 40.0% |
| CCCTTTAATCAACGAAAAGG+CGG | - | chr8_4:3714242-3714261 | None:intergenic | 40.0% | |
| !! | CCGCCTTTTCGTTGATTAAA+GGG | + | chr8_4:3714239-3714258 | Msa1307790:CDS | 40.0% |
| !! | CGCCTTTTCGTTGATTAAAG+GGG | + | chr8_4:3714240-3714259 | Msa1307790:CDS | 40.0% |
| CTCCCCTTTAATCAACGAAA+AGG | - | chr8_4:3714245-3714264 | None:intergenic | 40.0% | |
| !! | CTTTTCGTTGATTAAAGGGG+AGG | + | chr8_4:3714243-3714262 | Msa1307790:CDS | 40.0% |
| ! | TTTCGTTGATTAAAGGGGAG+GGG | + | chr8_4:3714245-3714264 | Msa1307790:CDS | 40.0% |
| GAGGTTACCAAGAGTAATGT+AGG | + | chr8_4:3714346-3714365 | Msa1307790:CDS | 40.0% | |
| AGCAGTTCCTACATTACTCT+TGG | - | chr8_4:3714356-3714375 | None:intergenic | 40.0% | |
| AATGTAGGAACTGCTACTGT+TGG | + | chr8_4:3714361-3714380 | Msa1307790:CDS | 40.0% | |
| ! | CTTTGGCTCACAACATCAAT+CGG | - | chr8_4:3714475-3714494 | None:intergenic | 40.0% |
| TACCTTGAACCATCAACCTT+TGG | - | chr8_4:3714492-3714511 | None:intergenic | 40.0% | |
| AGGAAAATTGTGAGAACGGA+TGG | + | chr8_4:3714574-3714593 | Msa1307790:CDS | 40.0% | |
| AAACCTCTATACAAACCCCT+AGG | - | chr8_4:3714601-3714620 | None:intergenic | 40.0% | |
| ! | AGGGGTTTGTATAGAGGTTT+TGG | + | chr8_4:3714601-3714620 | Msa1307790:CDS | 40.0% |
| ! | GGGGTTTGTATAGAGGTTTT+GGG | + | chr8_4:3714602-3714621 | Msa1307790:CDS | 40.0% |
| ATGCTCCTTCAAATGCAGTA+TGG | + | chr8_4:3714641-3714660 | Msa1307790:CDS | 40.0% | |
| TCCTTCAAATGCAGTATGGT+GGG | + | chr8_4:3714645-3714664 | Msa1307790:CDS | 40.0% | |
| TGTTGCACAAAGGATGGTTT+GGG | + | chr8_4:3714678-3714697 | Msa1307790:CDS | 40.0% | |
| CTTGAGTAACAAGAAAGGTG+GGG | + | chr8_4:3714717-3714736 | Msa1307790:CDS | 40.0% | |
| GAAGTGACAACAACAATGGA+GGG | + | chr8_4:3714743-3714762 | Msa1307790:CDS | 40.0% | |
| AAGTGACAACAACAATGGAG+GGG | + | chr8_4:3714744-3714763 | Msa1307790:CDS | 40.0% | |
| GCCGGATACAAAAACTGTTA+TGG | + | chr8_4:3714780-3714799 | Msa1307790:CDS | 40.0% | |
| GACGGTTAGAAGTTTGGTTA+AGG | + | chr8_4:3714936-3714955 | Msa1307790:CDS | 40.0% | |
| AGAAGTTTGGTTAAGGAAGG+TGG | + | chr8_4:3714943-3714962 | Msa1307790:CDS | 40.0% | |
| !! | GATGGCTTGTTATAGAGGAT+TGG | + | chr8_4:3714969-3714988 | Msa1307790:CDS | 40.0% |
| ! | AGCACCGAGGAAGAAAAACT+TGG | - | chr8_4:3714125-3714144 | None:intergenic | 45.0% |
| ! | GGGTTTGGTACTTCGTTGAT+GGG | + | chr8_4:3714286-3714305 | Msa1307790:CDS | 45.0% |
| !!! | GGAACTGCTACTGTTGGTTT+TGG | + | chr8_4:3714367-3714386 | Msa1307790:CDS | 45.0% |
| !!! | TTTTGGTCTTGCTGAACCGA+CGG | + | chr8_4:3714384-3714403 | Msa1307790:CDS | 45.0% |
| CGATTGATGTTGTGAGCCAA+AGG | + | chr8_4:3714473-3714492 | Msa1307790:CDS | 45.0% | |
| TGTTGTGAGCCAAAGGTTGA+TGG | + | chr8_4:3714480-3714499 | Msa1307790:CDS | 45.0% | |
| !! | AGCCAAAGGTTGATGGTTCA+AGG | + | chr8_4:3714487-3714506 | Msa1307790:CDS | 45.0% |
| CTCCTTCAAATGCAGTATGG+TGG | + | chr8_4:3714644-3714663 | Msa1307790:CDS | 45.0% | |
| CTGTTGCACAAAGGATGGTT+TGG | + | chr8_4:3714677-3714696 | Msa1307790:CDS | 45.0% | |
| GTTGCACAAAGGATGGTTTG+GGG | + | chr8_4:3714679-3714698 | Msa1307790:CDS | 45.0% | |
| AGTAACAAGAAAGGTGGGGA+GGG | + | chr8_4:3714721-3714740 | Msa1307790:CDS | 45.0% | |
| GAGGGAAGTGACAACAACAA+TGG | + | chr8_4:3714739-3714758 | Msa1307790:CDS | 45.0% | |
| GGAAGTGACAACAACAATGG+AGG | + | chr8_4:3714742-3714761 | Msa1307790:CDS | 45.0% | |
| TACAATCAAGACAAGGCTGC+AGG | + | chr8_4:3714867-3714886 | Msa1307790:CDS | 45.0% | |
| GTCTTAGATGGCGATGAGAA+TGG | + | chr8_4:3714889-3714908 | Msa1307790:CDS | 45.0% | |
| GATGCAGACGGTTAGAAGTT+TGG | + | chr8_4:3714930-3714949 | Msa1307790:CDS | 45.0% | |
| GTTTGGTTAAGGAAGGTGGT+TGG | + | chr8_4:3714947-3714966 | Msa1307790:CDS | 45.0% | |
| !! | GGTTGGATGGCTTGTTATAG+AGG | + | chr8_4:3714964-3714983 | Msa1307790:CDS | 45.0% |
| ATAGAGGATTGGGACCAAGA+TGG | + | chr8_4:3714980-3714999 | Msa1307790:CDS | 45.0% | |
| TAGAGGATTGGGACCAAGAT+GGG | + | chr8_4:3714981-3715000 | Msa1307790:CDS | 45.0% | |
| AACGACATTGAAGCCCATCT+TGG | - | chr8_4:3714997-3715016 | None:intergenic | 45.0% | |
| GCTTTCCGCAAAGAATCAAG+AGG | + | chr8_4:3715059-3715078 | Msa1307790:CDS | 45.0% | |
| ! | AGCACCGAGGAAGAAAAACT+TGG | - | chr8_4:3714125-3714144 | None:intergenic | 45.0% |
| ! | GGGTTTGGTACTTCGTTGAT+GGG | + | chr8_4:3714286-3714305 | Msa1307790:CDS | 45.0% |
| !!! | GGAACTGCTACTGTTGGTTT+TGG | + | chr8_4:3714367-3714386 | Msa1307790:CDS | 45.0% |
| !!! | TTTTGGTCTTGCTGAACCGA+CGG | + | chr8_4:3714384-3714403 | Msa1307790:CDS | 45.0% |
| CGATTGATGTTGTGAGCCAA+AGG | + | chr8_4:3714473-3714492 | Msa1307790:CDS | 45.0% | |
| TGTTGTGAGCCAAAGGTTGA+TGG | + | chr8_4:3714480-3714499 | Msa1307790:CDS | 45.0% | |
| !! | AGCCAAAGGTTGATGGTTCA+AGG | + | chr8_4:3714487-3714506 | Msa1307790:CDS | 45.0% |
| CTCCTTCAAATGCAGTATGG+TGG | + | chr8_4:3714644-3714663 | Msa1307790:CDS | 45.0% | |
| CTGTTGCACAAAGGATGGTT+TGG | + | chr8_4:3714677-3714696 | Msa1307790:CDS | 45.0% | |
| GTTGCACAAAGGATGGTTTG+GGG | + | chr8_4:3714679-3714698 | Msa1307790:CDS | 45.0% | |
| AGTAACAAGAAAGGTGGGGA+GGG | + | chr8_4:3714721-3714740 | Msa1307790:CDS | 45.0% | |
| GAGGGAAGTGACAACAACAA+TGG | + | chr8_4:3714739-3714758 | Msa1307790:CDS | 45.0% | |
| GGAAGTGACAACAACAATGG+AGG | + | chr8_4:3714742-3714761 | Msa1307790:CDS | 45.0% | |
| TACAATCAAGACAAGGCTGC+AGG | + | chr8_4:3714867-3714886 | Msa1307790:CDS | 45.0% | |
| GTCTTAGATGGCGATGAGAA+TGG | + | chr8_4:3714889-3714908 | Msa1307790:CDS | 45.0% | |
| GATGCAGACGGTTAGAAGTT+TGG | + | chr8_4:3714930-3714949 | Msa1307790:CDS | 45.0% | |
| GTTTGGTTAAGGAAGGTGGT+TGG | + | chr8_4:3714947-3714966 | Msa1307790:CDS | 45.0% | |
| !! | GGTTGGATGGCTTGTTATAG+AGG | + | chr8_4:3714964-3714983 | Msa1307790:CDS | 45.0% |
| ATAGAGGATTGGGACCAAGA+TGG | + | chr8_4:3714980-3714999 | Msa1307790:CDS | 45.0% | |
| TAGAGGATTGGGACCAAGAT+GGG | + | chr8_4:3714981-3715000 | Msa1307790:CDS | 45.0% | |
| AACGACATTGAAGCCCATCT+TGG | - | chr8_4:3714997-3715016 | None:intergenic | 45.0% | |
| GCTTTCCGCAAAGAATCAAG+AGG | + | chr8_4:3715059-3715078 | Msa1307790:CDS | 45.0% | |
| TGAGGAAGAGGTAGAGTCAG+AGG | + | chr8_4:3714051-3714070 | Msa1307790:CDS | 50.0% | |
| CAGAAAACAAAGCAGCACCG+AGG | - | chr8_4:3714138-3714157 | None:intergenic | 50.0% | |
| !!! | CTCGGTGCTGCTTTGTTTTC+TGG | + | chr8_4:3714136-3714155 | Msa1307790:CDS | 50.0% |
| !! | GGGTTTAGAGCGTTGTATCG+CGG | + | chr8_4:3714265-3714284 | Msa1307790:CDS | 50.0% |
| !! | GGTTTAGAGCGTTGTATCGC+GGG | + | chr8_4:3714266-3714285 | Msa1307790:CDS | 50.0% |
| ! | CGGGTTTGGTACTTCGTTGA+TGG | + | chr8_4:3714285-3714304 | Msa1307790:CDS | 50.0% |
| ! | TTCGTTGATGGGTACGATCC+CGG | + | chr8_4:3714297-3714316 | Msa1307790:CDS | 50.0% |
| GTTGTATATGGCAGCGCTTG+AGG | + | chr8_4:3714327-3714346 | Msa1307790:CDS | 50.0% | |
| TTAGCAATTGCAGCAGCCGT+CGG | - | chr8_4:3714403-3714422 | None:intergenic | 50.0% | |
| GGCTGCTGCAATTGCTAATG+CGG | + | chr8_4:3714405-3714424 | Msa1307790:CDS | 50.0% | |
| GCAATTGCTAATGCGGTTGC+TGG | + | chr8_4:3714412-3714431 | Msa1307790:CDS | 50.0% | |
| CTTTAGCAGCTCAGCTTGTG+TGG | + | chr8_4:3714446-3714465 | Msa1307790:CDS | 50.0% | |
| TTGTGAGAACGGATGGTCCT+AGG | + | chr8_4:3714581-3714600 | Msa1307790:CDS | 50.0% | |
| TGTGAGAACGGATGGTCCTA+GGG | + | chr8_4:3714582-3714601 | Msa1307790:CDS | 50.0% | |
| GGTCCTAGGGGTTTGTATAG+AGG | + | chr8_4:3714595-3714614 | Msa1307790:CDS | 50.0% | |
| GCCCACCATACTGCATTTGA+AGG | - | chr8_4:3714649-3714668 | None:intergenic | 50.0% | |
| GAGTAACAAGAAAGGTGGGG+AGG | + | chr8_4:3714720-3714739 | Msa1307790:CDS | 50.0% | |
| ATGGAGGGGCTAATGTGTTG+AGG | + | chr8_4:3714758-3714777 | Msa1307790:CDS | 50.0% | |
| TCAGGGAATCAGTGCAGCAA+TGG | + | chr8_4:3714807-3714826 | Msa1307790:CDS | 50.0% | |
| ACAAGGCTGCAGGTCTTAGA+TGG | + | chr8_4:3714877-3714896 | Msa1307790:CDS | 50.0% | |
| TGGACCAACAGTGATGCAGA+CGG | + | chr8_4:3714918-3714937 | Msa1307790:CDS | 50.0% | |
| CTAACCGTCTGCATCACTGT+TGG | - | chr8_4:3714925-3714944 | None:intergenic | 50.0% | |
| GGTTAAGGAAGGTGGTTGGA+TGG | + | chr8_4:3714951-3714970 | Msa1307790:CDS | 50.0% | |
| TGAGGAAGAGGTAGAGTCAG+AGG | + | chr8_4:3714051-3714070 | Msa1307790:CDS | 50.0% | |
| CAGAAAACAAAGCAGCACCG+AGG | - | chr8_4:3714138-3714157 | None:intergenic | 50.0% | |
| !!! | CTCGGTGCTGCTTTGTTTTC+TGG | + | chr8_4:3714136-3714155 | Msa1307790:CDS | 50.0% |
| !! | GGGTTTAGAGCGTTGTATCG+CGG | + | chr8_4:3714265-3714284 | Msa1307790:CDS | 50.0% |
| !! | GGTTTAGAGCGTTGTATCGC+GGG | + | chr8_4:3714266-3714285 | Msa1307790:CDS | 50.0% |
| ! | CGGGTTTGGTACTTCGTTGA+TGG | + | chr8_4:3714285-3714304 | Msa1307790:CDS | 50.0% |
| ! | TTCGTTGATGGGTACGATCC+CGG | + | chr8_4:3714297-3714316 | Msa1307790:CDS | 50.0% |
| GTTGTATATGGCAGCGCTTG+AGG | + | chr8_4:3714327-3714346 | Msa1307790:CDS | 50.0% | |
| TTAGCAATTGCAGCAGCCGT+CGG | - | chr8_4:3714403-3714422 | None:intergenic | 50.0% | |
| GGCTGCTGCAATTGCTAATG+CGG | + | chr8_4:3714405-3714424 | Msa1307790:CDS | 50.0% | |
| GCAATTGCTAATGCGGTTGC+TGG | + | chr8_4:3714412-3714431 | Msa1307790:CDS | 50.0% | |
| CTTTAGCAGCTCAGCTTGTG+TGG | + | chr8_4:3714446-3714465 | Msa1307790:CDS | 50.0% | |
| TTGTGAGAACGGATGGTCCT+AGG | + | chr8_4:3714581-3714600 | Msa1307790:CDS | 50.0% | |
| TGTGAGAACGGATGGTCCTA+GGG | + | chr8_4:3714582-3714601 | Msa1307790:CDS | 50.0% | |
| GGTCCTAGGGGTTTGTATAG+AGG | + | chr8_4:3714595-3714614 | Msa1307790:CDS | 50.0% | |
| GCCCACCATACTGCATTTGA+AGG | - | chr8_4:3714649-3714668 | None:intergenic | 50.0% | |
| GAGTAACAAGAAAGGTGGGG+AGG | + | chr8_4:3714720-3714739 | Msa1307790:CDS | 50.0% | |
| ATGGAGGGGCTAATGTGTTG+AGG | + | chr8_4:3714758-3714777 | Msa1307790:CDS | 50.0% | |
| TCAGGGAATCAGTGCAGCAA+TGG | + | chr8_4:3714807-3714826 | Msa1307790:CDS | 50.0% | |
| ACAAGGCTGCAGGTCTTAGA+TGG | + | chr8_4:3714877-3714896 | Msa1307790:CDS | 50.0% | |
| TGGACCAACAGTGATGCAGA+CGG | + | chr8_4:3714918-3714937 | Msa1307790:CDS | 50.0% | |
| CTAACCGTCTGCATCACTGT+TGG | - | chr8_4:3714925-3714944 | None:intergenic | 50.0% | |
| GGTTAAGGAAGGTGGTTGGA+TGG | + | chr8_4:3714951-3714970 | Msa1307790:CDS | 50.0% | |
| !! | AGAGCGTTGTATCGCGGGTT+TGG | + | chr8_4:3714271-3714290 | Msa1307790:CDS | 55.0% |
| CCATATACAACGCCCTAGCC+GGG | - | chr8_4:3714318-3714337 | None:intergenic | 55.0% | |
| GCCATATACAACGCCCTAGC+CGG | - | chr8_4:3714319-3714338 | None:intergenic | 55.0% | |
| !! | TGCGGTTGCTGGTTTGACTG+CGG | + | chr8_4:3714423-3714442 | Msa1307790:CDS | 55.0% |
| GTGAGAACGGATGGTCCTAG+GGG | + | chr8_4:3714583-3714602 | Msa1307790:CDS | 55.0% | |
| ! | GCACAAAGGATGGTTTGGGG+TGG | + | chr8_4:3714682-3714701 | Msa1307790:CDS | 55.0% |
| ! | AGGATGGTTTGGGGTGGAGT+TGG | + | chr8_4:3714688-3714707 | Msa1307790:CDS | 55.0% |
| AGGGGCTAATGTGTTGAGGC+CGG | + | chr8_4:3714762-3714781 | Msa1307790:CDS | 55.0% | |
| GGAATCAGTGCAGCAATGGC+AGG | + | chr8_4:3714811-3714830 | Msa1307790:CDS | 55.0% | |
| ATCAGTGCAGCAATGGCAGG+AGG | + | chr8_4:3714814-3714833 | Msa1307790:CDS | 55.0% | |
| GCATCACTGTTGGTCCACGA+CGG | - | chr8_4:3714915-3714934 | None:intergenic | 55.0% | |
| !! | AGAGCGTTGTATCGCGGGTT+TGG | + | chr8_4:3714271-3714290 | Msa1307790:CDS | 55.0% |
| CCATATACAACGCCCTAGCC+GGG | - | chr8_4:3714318-3714337 | None:intergenic | 55.0% | |
| GCCATATACAACGCCCTAGC+CGG | - | chr8_4:3714319-3714338 | None:intergenic | 55.0% | |
| !! | TGCGGTTGCTGGTTTGACTG+CGG | + | chr8_4:3714423-3714442 | Msa1307790:CDS | 55.0% |
| GTGAGAACGGATGGTCCTAG+GGG | + | chr8_4:3714583-3714602 | Msa1307790:CDS | 55.0% | |
| ! | GCACAAAGGATGGTTTGGGG+TGG | + | chr8_4:3714682-3714701 | Msa1307790:CDS | 55.0% |
| ! | AGGATGGTTTGGGGTGGAGT+TGG | + | chr8_4:3714688-3714707 | Msa1307790:CDS | 55.0% |
| AGGGGCTAATGTGTTGAGGC+CGG | + | chr8_4:3714762-3714781 | Msa1307790:CDS | 55.0% | |
| GGAATCAGTGCAGCAATGGC+AGG | + | chr8_4:3714811-3714830 | Msa1307790:CDS | 55.0% | |
| ATCAGTGCAGCAATGGCAGG+AGG | + | chr8_4:3714814-3714833 | Msa1307790:CDS | 55.0% | |
| GCATCACTGTTGGTCCACGA+CGG | - | chr8_4:3714915-3714934 | None:intergenic | 55.0% | |
| ! | TGATGGGTACGATCCCGGCT+AGG | + | chr8_4:3714302-3714321 | Msa1307790:CDS | 60.0% |
| GATGGGTACGATCCCGGCTA+GGG | + | chr8_4:3714303-3714322 | Msa1307790:CDS | 60.0% | |
| !! | CCCGGCTAGGGCGTTGTATA+TGG | + | chr8_4:3714315-3714334 | Msa1307790:CDS | 60.0% |
| ! | TGATGGGTACGATCCCGGCT+AGG | + | chr8_4:3714302-3714321 | Msa1307790:CDS | 60.0% |
| GATGGGTACGATCCCGGCTA+GGG | + | chr8_4:3714303-3714322 | Msa1307790:CDS | 60.0% | |
| !! | CCCGGCTAGGGCGTTGTATA+TGG | + | chr8_4:3714315-3714334 | Msa1307790:CDS | 60.0% |
| GGCGATGAGAATGGCCGTCG+TGG | + | chr8_4:3714898-3714917 | Msa1307790:CDS | 65.0% | |
| GGCGATGAGAATGGCCGTCG+TGG | + | chr8_4:3714898-3714917 | Msa1307790:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 3714034 | 3715092 | 3714034 | ID=Msa1307790;Name=Msa1307790 |
| chr8_4 | mRNA | 3714034 | 3715092 | 3714034 | ID=Msa1307790-mRNA-1;Parent=Msa1307790;Name=Msa1307790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|352 |
| chr8_4 | exon | 3714034 | 3715092 | 3714034 | ID=Msa1307790-mRNA-1:exon:1098;Parent=Msa1307790-mRNA-1 |
| chr8_4 | CDS | 3714034 | 3715092 | 3714034 | ID=Msa1307790-mRNA-1:cds;Parent=Msa1307790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
