AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1265520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1265520 MtrunA17_Chr4g0072191 97.436 351 9 0 50 400 61 411 0.0 689
Msa1265520 MtrunA17_Chr1g0176251 35.390 308 187 7 98 399 91 392 1.83e-46 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1265520 AT2G18950.1 72.156 334 88 1 67 400 65 393 9.33e-174 490
Msa1265520 AT2G18950.2 75.194 258 59 1 67 324 65 317 3.80e-135 390
Msa1265520 AT3G11945.1 33.433 335 204 9 72 399 64 386 1.96e-44 158
Msa1265520 AT3G11945.2 33.432 338 202 9 66 397 71 391 1.11e-43 157

Find 87 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATCTCTGACAGGTATTT+TGG 0.090566 8_2:-69899314 Msa1265520:intron
TGTTGTATCTTCTTCAATTC+TGG 0.148269 8_2:-69901242 Msa1265520:intron
ATTGAAGGAGATAAAATATT+TGG 0.210725 8_2:-69899436 Msa1265520:CDS
ACCCTTCTTGAATTGGCTTA+TGG 0.218092 8_2:-69899282 Msa1265520:CDS
TAGGTTCATGGCCATTGTTT+TGG 0.244456 8_2:-69901101 Msa1265520:CDS
TCCAGGCCACACACGGTTAT+TGG 0.246004 8_2:-69902120 Msa1265520:CDS
CATCCTTCTACATGTTTATC+TGG 0.262881 8_2:-69897721 Msa1265520:CDS
CAAGACTCCATCGAAATAAA+AGG 0.314813 8_2:+69897179 None:intergenic
TTGTGTTACCCTTCTTGAAT+TGG 0.325570 8_2:-69899289 Msa1265520:CDS
CAATATAAATGTTCATAAAC+AGG 0.328480 8_2:+69901745 None:intergenic
CAAATCTCTTCCATCTCAAC+AGG 0.335938 8_2:+69900146 None:intergenic
TTTATGAACATTTATATTGT+TGG 0.348917 8_2:-69901741 Msa1265520:CDS
CCGGATGCCAAGGGAAGATA+TGG 0.362386 8_2:+69901295 None:intergenic
AAGTTGCAGGTGGGAATCTT+TGG 0.373594 8_2:-69902786 Msa1265520:intron
TCGGATTCAAAAGATTGTTC+AGG 0.374186 8_2:+69902213 None:intergenic
TTGCCTGGATTGTAGGTTCA+TGG 0.382656 8_2:-69901113 Msa1265520:CDS
AAACATGTAGAAGGATGTTA+TGG 0.386693 8_2:+69897727 None:intergenic
ACAGGCATTAAGCATAATTT+CGG 0.406456 8_2:-69901954 Msa1265520:intron
TGAAGAAGATACAACAATAA+TGG 0.408142 8_2:+69901249 None:intergenic
GACAAAAGAACTCACGTTGA+TGG 0.409674 8_2:+69901041 None:intergenic
CTGCATGCATGATGTATACT+TGG 0.413429 8_2:-69897139 Msa1265520:three_prime_UTR
GCCAATAACCGTGTGTGGCC+TGG 0.417281 8_2:+69902119 None:intergenic
TTAACTGCAATTGTAAATGA+AGG 0.421617 8_2:-69897333 Msa1265520:three_prime_UTR
CTATTGCATTCTTGATATGT+AGG 0.424870 8_2:+69902258 None:intergenic
AATGGTCTTGAAAAGACAAT+TGG 0.432364 8_2:+69899627 None:intergenic
TATGGAGTCTCCCTTGTAGT+TGG 0.436333 8_2:-69899264 Msa1265520:CDS
CTTCCAGATAAACATGTAGA+AGG 0.437112 8_2:+69897718 None:intergenic
AAATGAAGGGTTATTTCTGT+TGG 0.438474 8_2:-69897319 Msa1265520:three_prime_UTR
TGTAGTTATAGCATTGTTCA+AGG 0.439585 8_2:-69899571 Msa1265520:intron
CATCAACTAAAAGACTATAT+AGG 0.443945 8_2:-69897088 Msa1265520:three_prime_UTR
CCATATCTTCCCTTGGCATC+CGG 0.448076 8_2:-69901295 Msa1265520:CDS
CGGATTCAAAAGATTGTTCA+GGG 0.450897 8_2:+69902214 None:intergenic
GGAGAATATTCCTTTGCAAC+TGG 0.454611 8_2:-69901274 Msa1265520:CDS
TGGATCAAAAGCAGGATGTT+CGG 0.455346 8_2:+69902194 None:intergenic
TTTCCAATGTGTTAGAGTCT+GGG 0.458228 8_2:-69897815 Msa1265520:intron
CTCATCTAACTAAAGGTATG+AGG 0.465169 8_2:+69897442 None:intergenic
GAACAACATCTTCTTGCCTA+TGG 0.469091 8_2:-69899242 Msa1265520:CDS
ACCAATTATAAAATCAAAGA+TGG 0.475441 8_2:+69897356 None:intergenic
TTCATGGATTCATTACTTGT+TGG 0.478510 8_2:-69902971 Msa1265520:CDS
TCGCAATAATGATTTAAACT+TGG 0.478764 8_2:+69902297 None:intergenic
CCTATGGAGTAAAATTGTTA+CGG 0.482072 8_2:-69899226 Msa1265520:intron
TTCAGGTGCCCCTGTTGAGA+TGG 0.490811 8_2:-69900156 Msa1265520:intron
AATGAATATGAGCATGACTT+AGG 0.494097 8_2:+69902941 None:intergenic
CTGCATTCTCATCTAACTAA+AGG 0.499042 8_2:+69897435 None:intergenic
AATGAAGGGTTATTTCTGTT+GGG 0.500548 8_2:-69897318 Msa1265520:three_prime_UTR
AAGGGTTATTTCTGTTGGGA+TGG 0.503383 8_2:-69897314 Msa1265520:three_prime_UTR
CTTCTACATGTTTATCTGGA+AGG 0.506016 8_2:-69897717 Msa1265520:intron
GGAATATTCTCCGGATGCCA+AGG 0.511719 8_2:+69901285 None:intergenic
AATGATGCTGCTTTAGTCAT+CGG 0.514151 8_2:-69897379 Msa1265520:three_prime_UTR
AAGATGTTGTTCCAACTACA+AGG 0.518827 8_2:+69899253 None:intergenic
CTCCATAAGCCAATTCAAGA+AGG 0.525019 8_2:+69899280 None:intergenic
TTGCAGGTGGGAATCTTTGG+CGG 0.528625 8_2:-69902783 Msa1265520:intron
TAGGATATACCCGATATTGA+AGG 0.534101 8_2:-69899451 Msa1265520:CDS
GTTTAAATCATTATTGCGAA+GGG 0.536180 8_2:-69902293 Msa1265520:CDS
TAACTGCAATTGTAAATGAA+GGG 0.541402 8_2:-69897332 Msa1265520:three_prime_UTR
TTCGGTGTCTCTCCTTGCAG+TGG 0.543367 8_2:-69901936 Msa1265520:CDS
AAAATCTGTAGAAAGCATCC+AGG 0.545036 8_2:+69902142 None:intergenic
AATGCAGTTGCAAAGATCAA+TGG 0.545132 8_2:+69899609 None:intergenic
TACCTTGTCTATTTCAACAT+CGG 0.553008 8_2:+69901704 None:intergenic
TGGCCATGAACCTACAATCC+AGG 0.555447 8_2:+69901110 None:intergenic
CATTATTGCGAAGGGGCAGA+AGG 0.557985 8_2:-69902285 Msa1265520:CDS
TCATATTCATTCACCACCAC+TGG 0.560807 8_2:-69902929 Msa1265520:intron
AAACAAACCATATCTTCCCT+TGG 0.565168 8_2:-69901302 Msa1265520:CDS
AATAATGGCACCAGTTGCAA+AGG 0.570603 8_2:+69901264 None:intergenic
TGTATAAAACCTGCATGTGA+AGG 0.571434 8_2:+69900062 None:intergenic
AGTTTAAATCATTATTGCGA+AGG 0.584363 8_2:-69902294 Msa1265520:CDS
TTGAACTATAACAGCACGAA+CGG 0.585160 8_2:+69900096 None:intergenic
AGTACGTTTAGGTCAGAAGC+GGG 0.589952 8_2:-69899398 Msa1265520:intron
AGTTGCAAAGGAATATTCTC+CGG 0.590284 8_2:+69901276 None:intergenic
TCCATAAGCCAATTCAAGAA+GGG 0.593760 8_2:+69899281 None:intergenic
CTGATAATTTCTCCACTGCA+AGG 0.606965 8_2:+69901924 None:intergenic
ATGAAAAGAGCCCAAAACAA+TGG 0.618159 8_2:+69901090 None:intergenic
CAGTACGTTTAGGTCAGAAG+CGG 0.623731 8_2:-69899399 Msa1265520:CDS
AAAGACTATATAGGTATAGA+CGG 0.624585 8_2:-69897079 Msa1265520:three_prime_UTR
AAATCTGTAGAAAGCATCCA+GGG 0.627217 8_2:+69902143 None:intergenic
GAATATTCTCCGGATGCCAA+GGG 0.633819 8_2:+69901286 None:intergenic
AAATCTCTTCCATCTCAACA+GGG 0.638024 8_2:+69900147 None:intergenic
AGTATACATCATGCATGCAG+AGG 0.643931 8_2:+69897142 None:intergenic
TTTAAATCATTATTGCGAAG+GGG 0.646603 8_2:-69902292 Msa1265520:CDS
AATATAAATGTTCATAAACA+GGG 0.649234 8_2:+69901746 None:intergenic
GTCCGATGTTGAAATAGACA+AGG 0.665037 8_2:-69901706 Msa1265520:intron
AGATGTTGTTCCAACTACAA+GGG 0.670870 8_2:+69899254 None:intergenic
GGATTCAAAAGATTGTTCAG+GGG 0.676357 8_2:+69902215 None:intergenic
ACTGTGCCAATAACCGTGTG+TGG 0.678607 8_2:+69902114 None:intergenic
TATTGTTCTTATGTATCACG+AGG 0.692656 8_2:-69903238 Msa1265520:intron
AATCTCTTCCATCTCAACAG+GGG 0.710194 8_2:+69900148 None:intergenic
GTTGATATTGATACCAGTGG+TGG 0.738459 8_2:+69902916 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTCACTTTTTTTTT+TGG - chr8_2:69897426-69897445 Msa1265520:exon 10.0%
!! TAAATTCTTAATTGATTAAT+AGG - chr8_2:69899571-69899590 Msa1265520:intron 10.0%
!! TTTACATTAAGATTAAAATA+AGG + chr8_2:69901418-69901437 None:intergenic 10.0%
!!! TTTTTAGTTTTTTTCATAAT+AGG + chr8_2:69903047-69903066 None:intergenic 10.0%
!!! AAAATGAGTATAATATTTTG+AGG - chr8_2:69897955-69897974 Msa1265520:intron 15.0%
!! AATATAAATGTTCATAAACA+GGG + chr8_2:69898541-69898560 None:intergenic 15.0%
!! TTTATGAACATTTATATTGT+TGG - chr8_2:69898543-69898562 Msa1265520:intron 15.0%
!!! AATAATTTGTAAGATGTAAA+AGG + chr8_2:69898900-69898919 None:intergenic 15.0%
!! TTTACATCTTACAAATTATT+TGG - chr8_2:69898900-69898919 Msa1265520:intron 15.0%
!! AAAACTATTTCAATTAAATG+TGG - chr8_2:69899461-69899480 Msa1265520:intron 15.0%
!! AAACTATTTCAATTAAATGT+GGG - chr8_2:69899462-69899481 Msa1265520:intron 15.0%
!! ATATATTAATCTATAGATAG+TGG + chr8_2:69900382-69900401 None:intergenic 15.0%
!! TTTAATTAATACTGTTGAAA+AGG + chr8_2:69900453-69900472 None:intergenic 15.0%
!!! CATTTTAACAATGATATTAT+TGG - chr8_2:69900514-69900533 Msa1265520:intron 15.0%
!! AATTAAGTAAAACAGAAAAA+CGG - chr8_2:69901464-69901483 Msa1265520:intron 15.0%
!!! AATTATAGTTTTATTCTTTC+AGG + chr8_2:69901548-69901567 None:intergenic 15.0%
!! AATTCAAGATTATAAATAGT+TGG + chr8_2:69902381-69902400 None:intergenic 15.0%
!! AAGTGAAAAAAAATGAAATC+TGG + chr8_2:69897419-69897438 None:intergenic 20.0%
!! ATAGTTGAATAATAATAAGC+TGG + chr8_2:69897584-69897603 None:intergenic 20.0%
!!! GTTGTTTTTATAAATTCTCT+CGG + chr8_2:69897693-69897712 None:intergenic 20.0%
!! ACAACTTATAAATAATCTCA+CGG + chr8_2:69897805-69897824 None:intergenic 20.0%
!!! GTAACTTCAATTTTTTTTCT+AGG - chr8_2:69897894-69897913 Msa1265520:intron 20.0%
!!! TTTTGATCCAAAAAACATTT+TGG - chr8_2:69898103-69898122 Msa1265520:intron 20.0%
!! AATATTGACCATAAAATTTG+AGG + chr8_2:69898236-69898255 None:intergenic 20.0%
!! TAAACTTGAAAGAGAAATAA+CGG + chr8_2:69898435-69898454 None:intergenic 20.0%
!! AAAAACAATTATGAAGTTAG+GGG + chr8_2:69898483-69898502 None:intergenic 20.0%
!! CAAAAACAATTATGAAGTTA+GGG + chr8_2:69898484-69898503 None:intergenic 20.0%
!! ACAAAAACAATTATGAAGTT+AGG + chr8_2:69898485-69898504 None:intergenic 20.0%
!!! GTTTGTTTTATTTATGTTTC+AGG - chr8_2:69898503-69898522 Msa1265520:intron 20.0%
!! CAATATAAATGTTCATAAAC+AGG + chr8_2:69898542-69898561 None:intergenic 20.0%
!! ACTATTAGAATAAAACAATC+TGG - chr8_2:69898611-69898630 Msa1265520:intron 20.0%
!!! CTGCATCATATTTTTTATAT+TGG + chr8_2:69898681-69898700 None:intergenic 20.0%
!! GTAAAATATCAGTGAAAAAT+GGG + chr8_2:69899084-69899103 None:intergenic 20.0%
!! TGTAAAATATCAGTGAAAAA+TGG + chr8_2:69899085-69899104 None:intergenic 20.0%
!! TAATGCATTAAAAATGTGAA+AGG + chr8_2:69899289-69899308 None:intergenic 20.0%
!!! AAATTCAATTGCATTTTTAC+TGG - chr8_2:69899615-69899634 Msa1265520:CDS 20.0%
!! TTTATATCAGATAGAAAATG+TGG + chr8_2:69899666-69899685 None:intergenic 20.0%
!!! AATTCATCTTTTTTATCAGA+AGG - chr8_2:69899893-69899912 Msa1265520:intron 20.0%
!!! ATTCATCTTTTTTATCAGAA+GGG - chr8_2:69899894-69899913 Msa1265520:intron 20.0%
!!! AATCTTTATCCCAAAATTTT+TGG - chr8_2:69900320-69900339 Msa1265520:intron 20.0%
!! TATTACTTATCAGAGAATAA+AGG + chr8_2:69900429-69900448 None:intergenic 20.0%
!!! TGTTTGAATTCTGATATTTT+CGG - chr8_2:69900590-69900609 Msa1265520:intron 20.0%
!!! TATTTTATCTCCTTCAATAT+CGG + chr8_2:69900846-69900865 None:intergenic 20.0%
!! ATTGAAGGAGATAAAATATT+TGG - chr8_2:69900848-69900867 Msa1265520:intron 20.0%
!!! TGTTGACTATTTCAAATTAA+GGG + chr8_2:69901320-69901339 None:intergenic 20.0%
!!! TTGTTGACTATTTCAAATTA+AGG + chr8_2:69901321-69901340 None:intergenic 20.0%
!! AATACAATTAATATGACTAG+CGG + chr8_2:69901503-69901522 None:intergenic 20.0%
!!! ATGTTGCATTTTCTATAAAT+TGG - chr8_2:69901682-69901701 Msa1265520:intron 20.0%
!! AAAGGATTGTTAAAATAGTT+CGG + chr8_2:69901740-69901759 None:intergenic 20.0%
!!! AACAATCAATTTTGATTGTT+AGG + chr8_2:69902225-69902244 None:intergenic 20.0%
!! AGAATAAAGTTAAAAATTGC+TGG + chr8_2:69902449-69902468 None:intergenic 20.0%
!!! TTACTGTTTATCATTCTTTT+TGG - chr8_2:69902597-69902616 Msa1265520:intron 20.0%
!! CAACATCGTTATTAAAAAAA+CGG - chr8_2:69902655-69902674 Msa1265520:intron 20.0%
!! TACTTTATATGTGAAAAAGA+CGG + chr8_2:69902763-69902782 None:intergenic 20.0%
!! ACCAATTATAAAATCAAAGA+TGG + chr8_2:69902931-69902950 None:intergenic 20.0%
!!! TTTTTGTTTTTAGCTTATAG+TGG - chr8_2:69902994-69903013 Msa1265520:intron 20.0%
!! GAAAAAAACTAAAAAAACTC+TGG - chr8_2:69903052-69903071 Msa1265520:intron 20.0%
! ACAATAATAGTACATGTTAG+TGG - chr8_2:69897101-69897120 Msa1265520:three_prime_UTR 25.0%
! AATACAACTAAATCTGTCTT+TGG - chr8_2:69897232-69897251 Msa1265520:three_prime_UTR 25.0%
! TAATTCAAAGAAGAAAGCAA+TGG + chr8_2:69897285-69897304 None:intergenic 25.0%
!! TTGAATTATTGCAGTTTTCA+TGG - chr8_2:69897297-69897316 Msa1265520:three_prime_UTR 25.0%
! CAACTTATAAATAATCTCAC+GGG + chr8_2:69897804-69897823 None:intergenic 25.0%
!!! ATTTTGAATTTTTTTGTGCC+TGG + chr8_2:69897940-69897959 None:intergenic 25.0%
!!! AGTATAATATTTTGAGGTTC+TGG - chr8_2:69897961-69897980 Msa1265520:intron 25.0%
! TCGCAATAATGATTTAAACT+TGG + chr8_2:69897990-69898009 None:intergenic 25.0%
! AGTTTAAATCATTATTGCGA+AGG - chr8_2:69897990-69898009 Msa1265520:intron 25.0%
! GTTTAAATCATTATTGCGAA+GGG - chr8_2:69897991-69898010 Msa1265520:intron 25.0%
! TTTAAATCATTATTGCGAAG+GGG - chr8_2:69897992-69898011 Msa1265520:intron 25.0%
!! GAACTAATCCTCAAATTTTA+TGG - chr8_2:69898225-69898244 Msa1265520:intron 25.0%
! ATCTGTATGAATCACTTATT+TGG - chr8_2:69898267-69898286 Msa1265520:intron 25.0%
!! TTTGGATGATTGTCTTATTA+TGG - chr8_2:69898285-69898304 Msa1265520:intron 25.0%
!! TTGGATGATTGTCTTATTAT+GGG - chr8_2:69898286-69898305 Msa1265520:intron 25.0%
! AATACACCTGTAAAAAATAG+CGG + chr8_2:69898394-69898413 None:intergenic 25.0%
! GCGCAAAATTAATTTATTAG+AGG + chr8_2:69898638-69898657 None:intergenic 25.0%
!! ATAAATTAATTTTGCGCCTT+TGG - chr8_2:69898641-69898660 Msa1265520:intron 25.0%
!! TAAATTAATTTTGCGCCTTT+GGG - chr8_2:69898642-69898661 Msa1265520:intron 25.0%
!! TGTTTCTAAATATCCAACTT+TGG + chr8_2:69898725-69898744 None:intergenic 25.0%
! TCAATATATAAACCAGAGTT+TGG + chr8_2:69898820-69898839 None:intergenic 25.0%
! ACATCTTACAAATTATTTGG+AGG - chr8_2:69898903-69898922 Msa1265520:intron 25.0%
! TGAAGAAGATACAACAATAA+TGG + chr8_2:69899038-69899057 None:intergenic 25.0%
! AAAAATGGGATGAATCTATA+TGG + chr8_2:69899070-69899089 None:intergenic 25.0%
!! ATTCTCTTTTACAGAGTTTT+TGG - chr8_2:69899147-69899166 Msa1265520:intron 25.0%
! TTAAAAATGTGAAAGGAGAA+AGG + chr8_2:69899282-69899301 None:intergenic 25.0%
! ACATGGAAAAGTTAAAGAAA+TGG + chr8_2:69899436-69899455 None:intergenic 25.0%
!! TGAAATAGTTTTTCTCTACA+TGG + chr8_2:69899453-69899472 None:intergenic 25.0%
!!! TTCATCTTTTTTATCAGAAG+GGG - chr8_2:69899895-69899914 Msa1265520:intron 25.0%
!!! AATTAAACTTTTGGGATAGT+TGG + chr8_2:69899979-69899998 None:intergenic 25.0%
!! ACCTGATCAATTAAACTTTT+GGG + chr8_2:69899987-69900006 None:intergenic 25.0%
! TCAAATAACTCTTCAAAATG+TGG + chr8_2:69900063-69900082 None:intergenic 25.0%
! TTTGAAGAGTTATTTGATGA+TGG - chr8_2:69900066-69900085 Msa1265520:intron 25.0%
!! GAAAGTTTTCAAAAGACAAA+AGG + chr8_2:69900111-69900130 None:intergenic 25.0%
!!! TTTGTCTTTTGAAAACTTTC+AGG - chr8_2:69900111-69900130 Msa1265520:CDS 25.0%
! AATAGTTGGTCATTAATTGA+AGG + chr8_2:69900354-69900373 None:intergenic 25.0%
! ATTAAAGTGAAAGAGATGAA+TGG - chr8_2:69900467-69900486 Msa1265520:intron 25.0%
! TTAAAGTGAAAGAGATGAAT+GGG - chr8_2:69900468-69900487 Msa1265520:intron 25.0%
!!! TGAATGGGGAATTTTTTTAA+AGG - chr8_2:69900483-69900502 Msa1265520:intron 25.0%
! TCAGAATTCAAACATAGATT+TGG + chr8_2:69900584-69900603 None:intergenic 25.0%
! CCTATATAAATTCAGTACAA+AGG + chr8_2:69900817-69900836 None:intergenic 25.0%
! CCTTTGTACTGAATTTATAT+AGG - chr8_2:69900814-69900833 Msa1265520:intron 25.0%
!! ATTTTATCTCCTTCAATATC+GGG + chr8_2:69900845-69900864 None:intergenic 25.0%
! GAGTAATTTAGATTACATCT+TGG - chr8_2:69901145-69901164 Msa1265520:intron 25.0%
! AAGTCAACAACAATCTATAA+AGG - chr8_2:69901252-69901271 Msa1265520:CDS 25.0%
! TTCAAATTAAGGGGTAAAAT+TGG + chr8_2:69901310-69901329 None:intergenic 25.0%
! GTTGACTATTTCAAATTAAG+GGG + chr8_2:69901319-69901338 None:intergenic 25.0%
!! TTAAAATAGTTCGGTACTTT+TGG + chr8_2:69901731-69901750 None:intergenic 25.0%
!! AAAACCTCTCTTTTCTTTTA+CGG - chr8_2:69902042-69902061 Msa1265520:intron 25.0%
! TTCCAAATTAATAGGGATTT+GGG + chr8_2:69902111-69902130 None:intergenic 25.0%
! CAATCAAAATTGATTGTTCA+TGG - chr8_2:69902227-69902246 Msa1265520:CDS 25.0%
! TAAACAAAAGTTGAAGACTA+GGG + chr8_2:69902266-69902285 None:intergenic 25.0%
! TTAAACAAAAGTTGAAGACT+AGG + chr8_2:69902267-69902286 None:intergenic 25.0%
! AAAGTTAAAAATTGCTGGAA+AGG + chr8_2:69902444-69902463 None:intergenic 25.0%
!!! TTCCATGTTTTGAGAAATAA+TGG - chr8_2:69902695-69902714 Msa1265520:intron 25.0%
!! AACCATTATTTCTCAAAACA+TGG + chr8_2:69902700-69902719 None:intergenic 25.0%
!!! GCCATCTTTGATTTTATAAT+TGG - chr8_2:69902927-69902946 Msa1265520:intron 25.0%
! TTAACTGCAATTGTAAATGA+AGG - chr8_2:69902951-69902970 Msa1265520:CDS 25.0%
! TAACTGCAATTGTAAATGAA+GGG - chr8_2:69902952-69902971 Msa1265520:CDS 25.0%
! CATCAACTAAAAGACTATAT+AGG - chr8_2:69903196-69903215 Msa1265520:intron 25.0%
! AAAGACTATATAGGTATAGA+CGG - chr8_2:69903205-69903224 Msa1265520:intron 25.0%
TATTGTTCTTATGTATCACG+AGG - chr8_2:69897046-69897065 Msa1265520:three_prime_UTR 30.0%
AGAAACAGGTGTCAATAATT+CGG + chr8_2:69897152-69897171 None:intergenic 30.0%
TTCATGGATTCATTACTTGT+TGG - chr8_2:69897313-69897332 Msa1265520:three_prime_UTR 30.0%
AATGAATATGAGCATGACTT+AGG + chr8_2:69897346-69897365 None:intergenic 30.0%
AAAATGAAATCTGGAAGAAG+AGG + chr8_2:69897410-69897429 None:intergenic 30.0%
AATCCAAACAATCCCTTAAA+TGG + chr8_2:69897621-69897640 None:intergenic 30.0%
GTGAGTAAATAAGCTCAAAT+AGG + chr8_2:69897774-69897793 None:intergenic 30.0%
CTATTGCATTCTTGATATGT+AGG + chr8_2:69898029-69898048 None:intergenic 30.0%
!!! ATGTTTTTTGGATCAAAAGC+AGG + chr8_2:69898101-69898120 None:intergenic 30.0%
!!! ACAGTGTCCAAAATGTTTTT+TGG + chr8_2:69898113-69898132 None:intergenic 30.0%
TTAGTTCAGAGTAAATCTGA+GGG + chr8_2:69898212-69898231 None:intergenic 30.0%
ATTAGTTCAGAGTAAATCTG+AGG + chr8_2:69898213-69898232 None:intergenic 30.0%
! TGGATGATTGTCTTATTATG+GGG - chr8_2:69898287-69898306 Msa1265520:intron 30.0%
ACAGGCATTAAGCATAATTT+CGG - chr8_2:69898330-69898349 Msa1265520:intron 30.0%
ATACACCTGTAAAAAATAGC+GGG + chr8_2:69898393-69898412 None:intergenic 30.0%
!!! GCTATTTTTTACAGGTGTAT+TGG - chr8_2:69898393-69898412 Msa1265520:intron 30.0%
!!! ATTTTTTACAGGTGTATTGG+AGG - chr8_2:69898396-69898415 Msa1265520:intron 30.0%
!! AAAGAGAAATAACGGATTTG+GGG + chr8_2:69898427-69898446 None:intergenic 30.0%
!! GAAAGAGAAATAACGGATTT+GGG + chr8_2:69898428-69898447 None:intergenic 30.0%
!! TGAAAGAGAAATAACGGATT+TGG + chr8_2:69898429-69898448 None:intergenic 30.0%
TACCTTGTCTATTTCAACAT+CGG + chr8_2:69898583-69898602 None:intergenic 30.0%
TTATTGTAGTCTCTGATATG+TGG - chr8_2:69898858-69898877 Msa1265520:intron 30.0%
TATTTGGAGGAACTATCATA+TGG - chr8_2:69898916-69898935 Msa1265520:intron 30.0%
TGTTGTATCTTCTTCAATTC+TGG - chr8_2:69899042-69899061 Msa1265520:intron 30.0%
!! TTTTCATCAGTTTTGTGCTA+GGG - chr8_2:69899210-69899229 Msa1265520:intron 30.0%
TATCATACTCGTTAAGGATT+CGG - chr8_2:69899361-69899380 Msa1265520:intron 30.0%
ACATTTGTCACCATGATATT+TGG + chr8_2:69899403-69899422 None:intergenic 30.0%
ACCTAGTAACTTAAACGTTT+GGG + chr8_2:69899764-69899783 None:intergenic 30.0%
ATATAAGTGGATGTGTGTAT+TGG + chr8_2:69899865-69899884 None:intergenic 30.0%
GAATTCCAACACAATATAAG+TGG + chr8_2:69899878-69899897 None:intergenic 30.0%
TCCCAAAAGTTTAATTGATC+AGG - chr8_2:69899983-69900002 Msa1265520:intron 30.0%
! CACCTGATCAATTAAACTTT+TGG + chr8_2:69899988-69900007 None:intergenic 30.0%
CAAAAGTTTAATTGATCAGG+TGG - chr8_2:69899986-69900005 Msa1265520:intron 30.0%
! CAATAGCTTATTGTGCTTTT+TGG - chr8_2:69900243-69900262 Msa1265520:intron 30.0%
!! TTATCCCAAAATTTTTGGAC+TGG - chr8_2:69900325-69900344 Msa1265520:intron 30.0%
! GAAACCAGTCCAAAAATTTT+GGG + chr8_2:69900332-69900351 None:intergenic 30.0%
! AGATAGTGGTTTCAAATAGT+TGG + chr8_2:69900368-69900387 None:intergenic 30.0%
TAAAGTGAAAGAGATGAATG+GGG - chr8_2:69900469-69900488 Msa1265520:intron 30.0%
CAATGATATTATTGGAAGCA+TGG - chr8_2:69900522-69900541 Msa1265520:intron 30.0%
GAATTCAAACATAGATTTGG+TGG + chr8_2:69900581-69900600 None:intergenic 30.0%
! AATGGTCTTGAAAAGACAAT+TGG + chr8_2:69900660-69900679 None:intergenic 30.0%
TGTAGTTATAGCATTGTTCA+AGG - chr8_2:69900713-69900732 Msa1265520:intron 30.0%
TCAGTACAAAGGTTTGTATT+AGG + chr8_2:69900806-69900825 None:intergenic 30.0%
CTAAACGTACTGAAAAAGAT+TGG + chr8_2:69900877-69900896 None:intergenic 30.0%
!!! CAATCTTTTTCAGTACGTTT+AGG - chr8_2:69900875-69900894 Msa1265520:intron 30.0%
CCTATGGAGTAAAATTGTTA+CGG - chr8_2:69901058-69901077 Msa1265520:CDS 30.0%
ATTAAGGGGTAAAATTGGAA+AGG + chr8_2:69901305-69901324 None:intergenic 30.0%
TAGAAACAATCCACAACAAT+AGG - chr8_2:69901344-69901363 Msa1265520:intron 30.0%
! CTGCACTTTTATGGAATATT+TGG - chr8_2:69901621-69901640 Msa1265520:intron 30.0%
! CACTTTTATGGAATATTTGG+TGG - chr8_2:69901624-69901643 Msa1265520:intron 30.0%
ATAGAAAATGCAACATGAGA+AGG + chr8_2:69901678-69901697 None:intergenic 30.0%
!!! TGTTTTTGAGTGAGTATAAC+CGG + chr8_2:69901813-69901832 None:intergenic 30.0%
! ATTTTGTAGGAGAATTTTCC+AGG + chr8_2:69901859-69901878 None:intergenic 30.0%
GAAAGAATACTAGACTATCA+TGG - chr8_2:69901943-69901962 Msa1265520:CDS 30.0%
TGGTTCAAAAAAGATGAAAG+AGG - chr8_2:69901963-69901982 Msa1265520:intron 30.0%
GGTTCAAAAAAGATGAAAGA+GGG - chr8_2:69901964-69901983 Msa1265520:intron 30.0%
GTTCAAAAAAGATGAAAGAG+GGG - chr8_2:69901965-69901984 Msa1265520:intron 30.0%
TCCAAATTAATAGGGATTTG+GGG + chr8_2:69902110-69902129 None:intergenic 30.0%
CTTCCAAATTAATAGGGATT+TGG + chr8_2:69902112-69902131 None:intergenic 30.0%
CTGCTTCTTCCAAATTAATA+GGG + chr8_2:69902118-69902137 None:intergenic 30.0%
TAGGGAAATATTTCCATAGT+AGG + chr8_2:69902331-69902350 None:intergenic 30.0%
TGGAAATATTTCCCTAGTAA+TGG - chr8_2:69902335-69902354 Msa1265520:intron 30.0%
! GCTTTTCAAATCTACAGATT+TGG + chr8_2:69902530-69902549 None:intergenic 30.0%
AAACATGTAGAAGGATGTTA+TGG + chr8_2:69902560-69902579 None:intergenic 30.0%
AAACTCAAATGATAAACAGC+AGG + chr8_2:69902628-69902647 None:intergenic 30.0%
TCCAATTGAAATGCAAAAGA+TGG - chr8_2:69902737-69902756 Msa1265520:intron 30.0%
!! AAATGAAGGGTTATTTCTGT+TGG - chr8_2:69902965-69902984 Msa1265520:CDS 30.0%
!! AATGAAGGGTTATTTCTGTT+GGG - chr8_2:69902966-69902985 Msa1265520:CDS 30.0%
GATGTTGATATTGATACCAG+TGG + chr8_2:69897374-69897393 None:intergenic 35.0%
ATAAGCTGGAAAATGTTCCA+GGG + chr8_2:69897570-69897589 None:intergenic 35.0%
AATAAGCTGGAAAATGTTCC+AGG + chr8_2:69897571-69897590 None:intergenic 35.0%
TGACCATTTAAGGGATTGTT+TGG - chr8_2:69897615-69897634 Msa1265520:intron 35.0%
! GATCTTTTCGTAAGCTATCT+TGG + chr8_2:69897852-69897871 None:intergenic 35.0%
GGATTCAAAAGATTGTTCAG+GGG + chr8_2:69898072-69898091 None:intergenic 35.0%
CGGATTCAAAAGATTGTTCA+GGG + chr8_2:69898073-69898092 None:intergenic 35.0%
TCGGATTCAAAAGATTGTTC+AGG + chr8_2:69898074-69898093 None:intergenic 35.0%
!! AAATCTGTAGAAAGCATCCA+GGG + chr8_2:69898144-69898163 None:intergenic 35.0%
!! AAAATCTGTAGAAAGCATCC+AGG + chr8_2:69898145-69898164 None:intergenic 35.0%
! ATGCTTTCTACAGATTTTCC+AGG - chr8_2:69898147-69898166 Msa1265520:intron 35.0%
TAGTTCAGAGTAAATCTGAG+GGG + chr8_2:69898211-69898230 None:intergenic 35.0%
!!! ATATCCCCGCTATTTTTTAC+AGG - chr8_2:69898385-69898404 Msa1265520:intron 35.0%
TACACCTGTAAAAAATAGCG+GGG + chr8_2:69898392-69898411 None:intergenic 35.0%
TAAATATCCTATTGCTCCCT+TGG - chr8_2:69898453-69898472 Msa1265520:intron 35.0%
GCTCTTAGTTAATCCAAAGT+TGG - chr8_2:69898709-69898728 Msa1265520:intron 35.0%
!! TGATTTTGACAACCAAACTC+TGG - chr8_2:69898805-69898824 Msa1265520:intron 35.0%
! GTAAAAGGATGTGTGTTTTC+TGG + chr8_2:69898885-69898904 None:intergenic 35.0%
AAACAAACCATATCTTCCCT+TGG - chr8_2:69898982-69899001 Msa1265520:intron 35.0%
AGTTGCAAAGGAATATTCTC+CGG + chr8_2:69899011-69899030 None:intergenic 35.0%
ATGAAAAGAGCCCAAAACAA+TGG + chr8_2:69899197-69899216 None:intergenic 35.0%
!! CTTTTCATCAGTTTTGTGCT+AGG - chr8_2:69899209-69899228 Msa1265520:intron 35.0%
GAACAGTATCATACTCGTTA+AGG - chr8_2:69899355-69899374 Msa1265520:intron 35.0%
!! GCTTGCTTTTCCAAATATCA+TGG - chr8_2:69899390-69899409 Msa1265520:intron 35.0%
! TCCCAAACGTTTAAGTTACT+AGG - chr8_2:69899760-69899779 Msa1265520:intron 35.0%
CACCTAGTAACTTAAACGTT+TGG + chr8_2:69899765-69899784 None:intergenic 35.0%
CACATCCACTTATATTGTGT+TGG - chr8_2:69899870-69899889 Msa1265520:intron 35.0%
!!! ATCTTTTTTATCAGAAGGGG+CGG - chr8_2:69899898-69899917 Msa1265520:intron 35.0%
TCTAGATCACTTGGTCATAA+AGG - chr8_2:69899933-69899952 Msa1265520:intron 35.0%
!!! CTTTTGGGATAGTTGGTTTA+TGG + chr8_2:69899972-69899991 None:intergenic 35.0%
AAATCTCTTCCATCTCAACA+GGG + chr8_2:69900140-69900159 None:intergenic 35.0%
TTGAACTATAACAGCACGAA+CGG + chr8_2:69900191-69900210 None:intergenic 35.0%
TGTATAAAACCTGCATGTGA+AGG + chr8_2:69900225-69900244 None:intergenic 35.0%
!! TAGCTTATTGTGCTTTTTGG+AGG - chr8_2:69900246-69900265 Msa1265520:intron 35.0%
! GGAAACCAGTCCAAAAATTT+TGG + chr8_2:69900333-69900352 None:intergenic 35.0%
!! TCAAACATAGATTTGGTGGA+TGG + chr8_2:69900577-69900596 None:intergenic 35.0%
AATGCAGTTGCAAAGATCAA+TGG + chr8_2:69900678-69900697 None:intergenic 35.0%
TAGGATATACCCGATATTGA+AGG - chr8_2:69900833-69900852 Msa1265520:intron 35.0%
GACAACCATGGGATAAAAAA+GGG + chr8_2:69900945-69900964 None:intergenic 35.0%
! CTAATCTCTGACAGGTATTT+TGG - chr8_2:69900970-69900989 Msa1265520:intron 35.0%
AGATGTTGTTCCAACTACAA+GGG + chr8_2:69901033-69901052 None:intergenic 35.0%
AAGATGTTGTTCCAACTACA+AGG + chr8_2:69901034-69901053 None:intergenic 35.0%
! CCGTAACAATTTTACTCCAT+AGG + chr8_2:69901061-69901080 None:intergenic 35.0%
TAAAGGTAGTAAACCCTTTG+AGG - chr8_2:69901269-69901288 Msa1265520:CDS 35.0%
! CATAAAAGTGCAGCATGAAA+AGG + chr8_2:69901614-69901633 None:intergenic 35.0%
! CTTTTCATGCTGCACTTTTA+TGG - chr8_2:69901612-69901631 Msa1265520:intron 35.0%
AAAATGCAACATGAGAAGGA+AGG + chr8_2:69901674-69901693 None:intergenic 35.0%
ACTAAAGGGATAGTGAAAAC+TGG + chr8_2:69901776-69901795 None:intergenic 35.0%
ATGGGTGGAATCAAACTAAA+GGG + chr8_2:69901790-69901809 None:intergenic 35.0%
! GGACAATTTTGCATTAGACT+GGG + chr8_2:69901838-69901857 None:intergenic 35.0%
! AGGACAATTTTGCATTAGAC+TGG + chr8_2:69901839-69901858 None:intergenic 35.0%
AGTCTAATGCAAAATTGTCC+TGG - chr8_2:69901838-69901857 Msa1265520:intron 35.0%
AAAAAAGATGAAAGAGGGGT+TGG - chr8_2:69901969-69901988 Msa1265520:intron 35.0%
GATACCGTAAAAGAAAAGAG+AGG + chr8_2:69902049-69902068 None:intergenic 35.0%
CCAAATTAATAGGGATTTGG+GGG + chr8_2:69902109-69902128 None:intergenic 35.0%
GCTGCTTCTTCCAAATTAAT+AGG + chr8_2:69902119-69902138 None:intergenic 35.0%
CATTATTCAGCGCAATATGA+CGG - chr8_2:69902287-69902306 Msa1265520:CDS 35.0%
ATATTTCCATAGTAGGCACT+AGG + chr8_2:69902324-69902343 None:intergenic 35.0%
CAACAGAAACACCATTACTA+GGG + chr8_2:69902349-69902368 None:intergenic 35.0%
! TTTTCCAATGTGTTAGAGTC+TGG - chr8_2:69902468-69902487 Msa1265520:intron 35.0%
TTTCCAATGTGTTAGAGTCT+GGG - chr8_2:69902469-69902488 Msa1265520:intron 35.0%
CATCCTTCTACATGTTTATC+TGG - chr8_2:69902563-69902582 Msa1265520:intron 35.0%
CTTCCAGATAAACATGTAGA+AGG + chr8_2:69902569-69902588 None:intergenic 35.0%
CTTCTACATGTTTATCTGGA+AGG - chr8_2:69902567-69902586 Msa1265520:intron 35.0%
! GCCATCTTTTGCATTTCAAT+TGG + chr8_2:69902741-69902760 None:intergenic 35.0%
! CTCATCTAACTAAAGGTATG+AGG + chr8_2:69902845-69902864 None:intergenic 35.0%
CTGCATTCTCATCTAACTAA+AGG + chr8_2:69902852-69902871 None:intergenic 35.0%
!! AATGATGCTGCTTTAGTCAT+CGG - chr8_2:69902905-69902924 Msa1265520:intron 35.0%
!! ATTCGTGCCTTTTATTTCGA+TGG - chr8_2:69903098-69903117 Msa1265520:intron 35.0%
CAAGACTCCATCGAAATAAA+AGG + chr8_2:69903108-69903127 None:intergenic 35.0%
!! TGACACCTGTTTCTACATCT+TGG - chr8_2:69897158-69897177 Msa1265520:three_prime_UTR 40.0%
TGAAGCCAAGATGTAGAAAC+AGG + chr8_2:69897166-69897185 None:intergenic 40.0%
! ATCTGTCTTTGGTAATTCGC+AGG - chr8_2:69897243-69897262 Msa1265520:three_prime_UTR 40.0%
TCATATTCATTCACCACCAC+TGG - chr8_2:69897355-69897374 Msa1265520:three_prime_UTR 40.0%
GTTGATATTGATACCAGTGG+TGG + chr8_2:69897371-69897390 None:intergenic 40.0%
TTCAATTCCAAGTATGTCCC+TGG - chr8_2:69897550-69897569 Msa1265520:intron 40.0%
AAATGTTCCAGGGACATACT+TGG + chr8_2:69897560-69897579 None:intergenic 40.0%
ACAATCCCTTAAATGGTCAG+CGG + chr8_2:69897614-69897633 None:intergenic 40.0%
AAATTCTCTCGGAAAGTCTC+AGG + chr8_2:69897682-69897701 None:intergenic 40.0%
TGGATCAAAAGCAGGATGTT+CGG + chr8_2:69898093-69898112 None:intergenic 40.0%
GGACACTGTTAAAAATTCCC+TGG - chr8_2:69898124-69898143 Msa1265520:intron 40.0%
GACTATATCTGTGTTTGGAC+AGG - chr8_2:69898312-69898331 Msa1265520:intron 40.0%
CTGATAATTTCTCCACTGCA+AGG + chr8_2:69898363-69898382 None:intergenic 40.0%
GTCCGATGTTGAAATAGACA+AGG - chr8_2:69898578-69898597 Msa1265520:intron 40.0%
GGAGAATATTCCTTTGCAAC+TGG - chr8_2:69899010-69899029 Msa1265520:intron 40.0%
AATAATGGCACCAGTTGCAA+AGG + chr8_2:69899023-69899042 None:intergenic 40.0%
! TAGGTTCATGGCCATTGTTT+TGG - chr8_2:69899183-69899202 Msa1265520:intron 40.0%
! AGGTTCATGGCCATTGTTTT+GGG - chr8_2:69899184-69899203 Msa1265520:intron 40.0%
GACAAAAGAACTCACGTTGA+TGG + chr8_2:69899246-69899265 None:intergenic 40.0%
! CGTTTGGGATTGTTAGTTCA+CGG + chr8_2:69899749-69899768 None:intergenic 40.0%
AATCTCTTCCATCTCAACAG+GGG + chr8_2:69900139-69900158 None:intergenic 40.0%
CAAATCTCTTCCATCTCAAC+AGG + chr8_2:69900141-69900160 None:intergenic 40.0%
! AGCATTTTTCCTTCACATGC+AGG - chr8_2:69900213-69900232 Msa1265520:intron 40.0%
TTCGCCATTTAGTCCTCAAA+AGG - chr8_2:69900403-69900422 Msa1265520:intron 40.0%
!! AAGGCCTTTTGAGGACTAAA+TGG + chr8_2:69900410-69900429 None:intergenic 40.0%
! CAGAGAATAAAGGCCTTTTG+AGG + chr8_2:69900419-69900438 None:intergenic 40.0%
TGGTGTCTGACTAACTAGTA+TGG - chr8_2:69900542-69900561 Msa1265520:intron 40.0%
! TCCAGACTTTTGTGTACAAG+AGG - chr8_2:69900634-69900653 Msa1265520:intron 40.0%
CGACAACCATGGGATAAAAA+AGG + chr8_2:69900946-69900965 None:intergenic 40.0%
! GATTAGTTAGCGACAACCAT+GGG + chr8_2:69900956-69900975 None:intergenic 40.0%
! AGATTAGTTAGCGACAACCA+TGG + chr8_2:69900957-69900976 None:intergenic 40.0%
GAACAACATCTTCTTGCCTA+TGG - chr8_2:69901042-69901061 Msa1265520:intron 40.0%
ATACTGTGTTTGCACTTTGC+AGG - chr8_2:69901106-69901125 Msa1265520:CDS 40.0%
!! GTAGTAAACCCTTTGAGGTT+GGG - chr8_2:69901274-69901293 Msa1265520:CDS 40.0%
AGGTAAAACCCAACCTCAAA+GGG + chr8_2:69901285-69901304 None:intergenic 40.0%
AAGGTAAAACCCAACCTCAA+AGG + chr8_2:69901286-69901305 None:intergenic 40.0%
! GACTGTTTCTCCTATTGTTG+TGG + chr8_2:69901357-69901376 None:intergenic 40.0%
TAGACTAGCAAGTTCATCCA+CGG - chr8_2:69901580-69901599 Msa1265520:intron 40.0%
ATGAAAAGGAAGTCAATCCG+TGG + chr8_2:69901600-69901619 None:intergenic 40.0%
! ACTGGTGGTGTCAAACTAAA+AGG + chr8_2:69901758-69901777 None:intergenic 40.0%
AAAGGGATAGTGAAAACTGG+TGG + chr8_2:69901773-69901792 None:intergenic 40.0%
GATGGGTGGAATCAAACTAA+AGG + chr8_2:69901791-69901810 None:intergenic 40.0%
! TTAGTTTGATTCCACCCATC+CGG - chr8_2:69901791-69901810 Msa1265520:intron 40.0%
TTGAGTGAGTATAACCGGAT+GGG + chr8_2:69901808-69901827 None:intergenic 40.0%
TTTGAGTGAGTATAACCGGA+TGG + chr8_2:69901809-69901828 None:intergenic 40.0%
GATGAAAATCAAGTGTGCAG+GGG + chr8_2:69901887-69901906 None:intergenic 40.0%
CGATGAAAATCAAGTGTGCA+GGG + chr8_2:69901888-69901907 None:intergenic 40.0%
TCGATGAAAATCAAGTGTGC+AGG + chr8_2:69901889-69901908 None:intergenic 40.0%
!!! AGGTTTTGAGCAATATGTGG+TGG + chr8_2:69902029-69902048 None:intergenic 40.0%
!!! GAGAGGTTTTGAGCAATATG+TGG + chr8_2:69902032-69902051 None:intergenic 40.0%
CCCCCAAATCCCTATTAATT+TGG - chr8_2:69902106-69902125 Msa1265520:intron 40.0%
AAAGTTGAAGACTAGGGTGA+GGG + chr8_2:69902260-69902279 None:intergenic 40.0%
AAAAGTTGAAGACTAGGGTG+AGG + chr8_2:69902261-69902280 None:intergenic 40.0%
GCAACAGAAACACCATTACT+AGG + chr8_2:69902350-69902369 None:intergenic 40.0%
!! AAGGGTTATTTCTGTTGGGA+TGG - chr8_2:69902970-69902989 Msa1265520:CDS 40.0%
AGTATACATCATGCATGCAG+AGG + chr8_2:69903145-69903164 None:intergenic 40.0%
CTGCATGCATGATGTATACT+TGG - chr8_2:69903145-69903164 Msa1265520:intron 40.0%
AAGTTGCAGGTGGGAATCTT+TGG - chr8_2:69897498-69897517 Msa1265520:intron 45.0%
TCATTGCCGCTGACCATTTA+AGG - chr8_2:69897605-69897624 Msa1265520:intron 45.0%
CATTGCCGCTGACCATTTAA+GGG - chr8_2:69897606-69897625 Msa1265520:intron 45.0%
CTTGTGCATCAAAAGCTTCC+AGG - chr8_2:69897919-69897938 Msa1265520:intron 45.0%
GGGCTGACTATATCTGTGTT+TGG - chr8_2:69898307-69898326 Msa1265520:intron 45.0%
GGAAAGTTTCAGAAGCCCAA+AGG + chr8_2:69898660-69898679 None:intergenic 45.0%
GAATATTCTCCGGATGCCAA+GGG + chr8_2:69899001-69899020 None:intergenic 45.0%
!!! TACAGAGTTTTTGGCTTGCC+TGG - chr8_2:69899156-69899175 Msa1265520:intron 45.0%
!!! TTTTGGCTTGCCTGGATTGT+AGG - chr8_2:69899164-69899183 Msa1265520:intron 45.0%
TTGCCTGGATTGTAGGTTCA+TGG - chr8_2:69899171-69899190 Msa1265520:intron 45.0%
!! CATCAGTTTTGTGCTAGGGA+CGG - chr8_2:69899214-69899233 Msa1265520:intron 45.0%
TGCAAGCTCAAACATGGGTA+GGG + chr8_2:69899696-69899715 None:intergenic 45.0%
TTCACTCGTGAATTCCCTCT+GGG - chr8_2:69899827-69899846 Msa1265520:intron 45.0%
GGGTTAGACTCTAGATCACT+TGG - chr8_2:69899924-69899943 Msa1265520:intron 45.0%
GCCTCTTGTACACAAAAGTC+TGG + chr8_2:69900638-69900657 None:intergenic 45.0%
CAGTACGTTTAGGTCAGAAG+CGG - chr8_2:69900885-69900904 Msa1265520:intron 45.0%
AGTACGTTTAGGTCAGAAGC+GGG - chr8_2:69900886-69900905 Msa1265520:intron 45.0%
!!! CTGCTCCCTTTTTTATCCCA+TGG - chr8_2:69900937-69900956 Msa1265520:intron 45.0%
GTCGCTAACTAATCTCTGAC+AGG - chr8_2:69900962-69900981 Msa1265520:intron 45.0%
TATGGAGTCTCCCTTGTAGT+TGG - chr8_2:69901020-69901039 Msa1265520:intron 45.0%
!! GGTAGTAAACCCTTTGAGGT+TGG - chr8_2:69901273-69901292 Msa1265520:CDS 45.0%
!! TGCAGGGGAGTTGATTTTGT+AGG + chr8_2:69901872-69901891 None:intergenic 45.0%
! CTTTGCTATGTGCGATTGCA+GGG - chr8_2:69902071-69902090 Msa1265520:intron 45.0%
! TTTGCTATGTGCGATTGCAG+GGG - chr8_2:69902072-69902091 Msa1265520:intron 45.0%
AATGCATATTAGCCCCCTTC+TGG + chr8_2:69902151-69902170 None:intergenic 45.0%
ATACTGCCTAGTGCCTACTA+TGG - chr8_2:69902315-69902334 Msa1265520:intron 45.0%
TGTCCCAGACTCTAACACAT+TGG + chr8_2:69902475-69902494 None:intergenic 45.0%
!!! GTATTTTTATATATAATATA+AGG + chr8_2:69901187-69901206 None:intergenic 5.0%
! TCTGTGCCATTGCAAGTTGC+AGG - chr8_2:69897485-69897504 Msa1265520:intron 50.0%
TGCCATTGCAAGTTGCAGGT+GGG - chr8_2:69897489-69897508 Msa1265520:intron 50.0%
TTCCCACCTGCAACTTGCAA+TGG + chr8_2:69897494-69897513 None:intergenic 50.0%
TTGCAGGTGGGAATCTTTGG+CGG - chr8_2:69897501-69897520 Msa1265520:intron 50.0%
CATTATTGCGAAGGGGCAGA+AGG - chr8_2:69897999-69898018 Msa1265520:intron 50.0%
! CAGATTTTCCAGGCCACACA+CGG - chr8_2:69898157-69898176 Msa1265520:intron 50.0%
ACTGTGCCAATAACCGTGTG+TGG + chr8_2:69898173-69898192 None:intergenic 50.0%
TGAAGTTAGGGGCAAGCCAA+GGG + chr8_2:69898472-69898491 None:intergenic 50.0%
ATGAAGTTAGGGGCAAGCCA+AGG + chr8_2:69898473-69898492 None:intergenic 50.0%
CCATATCTTCCCTTGGCATC+CGG - chr8_2:69898989-69899008 Msa1265520:intron 50.0%
GGAATATTCTCCGGATGCCA+AGG + chr8_2:69899002-69899021 None:intergenic 50.0%
TGGCCATGAACCTACAATCC+AGG + chr8_2:69899177-69899196 None:intergenic 50.0%
CTGCAAGCTCAAACATGGGT+AGG + chr8_2:69899697-69899716 None:intergenic 50.0%
CTACCCATGTTTGAGCTTGC+AGG - chr8_2:69899695-69899714 Msa1265520:intron 50.0%
CTGCCTGCAAGCTCAAACAT+GGG + chr8_2:69899701-69899720 None:intergenic 50.0%
TCTGCCTGCAAGCTCAAACA+TGG + chr8_2:69899702-69899721 None:intergenic 50.0%
CAGAGGGAATTCACGAGTGA+AGG + chr8_2:69899828-69899847 None:intergenic 50.0%
CTTCACTCGTGAATTCCCTC+TGG - chr8_2:69899826-69899845 Msa1265520:intron 50.0%
! TTTTATCAGAAGGGGCGGCA+AGG - chr8_2:69899903-69899922 Msa1265520:intron 50.0%
TTTATCAGAAGGGGCGGCAA+GGG - chr8_2:69899904-69899923 Msa1265520:intron 50.0%
TGATCAGGTGGAGACAAGCA+CGG - chr8_2:69899998-69900017 Msa1265520:intron 50.0%
AGTGAGTATAACCGGATGGG+TGG + chr8_2:69901805-69901824 None:intergenic 50.0%
! GCTTTGCTATGTGCGATTGC+AGG - chr8_2:69902070-69902089 Msa1265520:intron 50.0%
! GTGCCATTGCAAGTTGCAGG+TGG - chr8_2:69897488-69897507 Msa1265520:intron 55.0%
TCCAGGCCACACACGGTTAT+TGG - chr8_2:69898164-69898183 Msa1265520:intron 55.0%
!! TTCGGTGTCTCTCCTTGCAG+TGG - chr8_2:69898348-69898367 Msa1265520:intron 55.0%
CCGGATGCCAAGGGAAGATA+TGG + chr8_2:69898992-69899011 None:intergenic 55.0%
TTCAGGTGCCCCTGTTGAGA+TGG - chr8_2:69900128-69900147 Msa1265520:CDS 55.0%
AGCAGCAGATGTCCTCCAGA+AGG - chr8_2:69902133-69902152 Msa1265520:CDS 55.0%
GCAGCAGATGTCCTCCAGAA+GGG - chr8_2:69902134-69902153 Msa1265520:CDS 55.0%
CAGCAGATGTCCTCCAGAAG+GGG - chr8_2:69902135-69902154 Msa1265520:CDS 55.0%
AGCAGATGTCCTCCAGAAGG+GGG - chr8_2:69902136-69902155 Msa1265520:CDS 55.0%
GCATATTAGCCCCCTTCTGG+AGG + chr8_2:69902148-69902167 None:intergenic 55.0%
GTTGAAGACTAGGGTGAGGG+TGG + chr8_2:69902257-69902276 None:intergenic 55.0%
GCCAATAACCGTGTGTGGCC+TGG + chr8_2:69898168-69898187 None:intergenic 60.0%
GGGCAAGCCAAGGGAGCAAT+AGG + chr8_2:69898463-69898482 None:intergenic 60.0%
GGCTGTGCTACAAGCCCAGA+GGG + chr8_2:69899844-69899863 None:intergenic 60.0%
TGGCTGTGCTACAAGCCCAG+AGG + chr8_2:69899845-69899864 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 69897018 69903288 69897018 ID=Msa1265520;Name=Msa1265520
chr8_2 mRNA 69897018 69903288 69897018 ID=Msa1265520-mRNA-1;Parent=Msa1265520;Name=Msa1265520-mRNA-1;_AED=0.20;_eAED=0.20;_QI=17|0.84|0.85|1|0.92|0.92|14|425|400
chr8_2 exon 69897018 69897484 69897018 ID=Msa1265520-mRNA-1:exon:23187;Parent=Msa1265520-mRNA-1
chr8_2 exon 69897718 69897822 69897718 ID=Msa1265520-mRNA-1:exon:23186;Parent=Msa1265520-mRNA-1
chr8_2 exon 69899227 69899322 69899227 ID=Msa1265520-mRNA-1:exon:23185;Parent=Msa1265520-mRNA-1
chr8_2 exon 69899399 69899470 69899399 ID=Msa1265520-mRNA-1:exon:23184;Parent=Msa1265520-mRNA-1
chr8_2 exon 69899572 69899667 69899572 ID=Msa1265520-mRNA-1:exon:23183;Parent=Msa1265520-mRNA-1
chr8_2 exon 69900072 69900173 69900072 ID=Msa1265520-mRNA-1:exon:23182;Parent=Msa1265520-mRNA-1
chr8_2 exon 69901056 69901145 69901056 ID=Msa1265520-mRNA-1:exon:23181;Parent=Msa1265520-mRNA-1
chr8_2 exon 69901243 69901326 69901243 ID=Msa1265520-mRNA-1:exon:23180;Parent=Msa1265520-mRNA-1
chr8_2 exon 69901707 69901781 69901707 ID=Msa1265520-mRNA-1:exon:23179;Parent=Msa1265520-mRNA-1
chr8_2 exon 69901889 69901972 69901889 ID=Msa1265520-mRNA-1:exon:23178;Parent=Msa1265520-mRNA-1
chr8_2 exon 69902116 69902319 69902116 ID=Msa1265520-mRNA-1:exon:23177;Parent=Msa1265520-mRNA-1
chr8_2 exon 69902746 69902799 69902746 ID=Msa1265520-mRNA-1:exon:23176;Parent=Msa1265520-mRNA-1
chr8_2 exon 69902930 69902995 69902930 ID=Msa1265520-mRNA-1:exon:23175;Parent=Msa1265520-mRNA-1
chr8_2 exon 69903239 69903288 69903239 ID=Msa1265520-mRNA-1:exon:23174;Parent=Msa1265520-mRNA-1
chr8_2 five_prime_UTR 69903272 69903288 69903272 ID=Msa1265520-mRNA-1:five_prime_utr;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69903239 69903271 69903239 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69902930 69902995 69902930 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69902746 69902799 69902746 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69902116 69902319 69902116 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69901889 69901972 69901889 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69901707 69901781 69901707 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69901243 69901326 69901243 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69901056 69901145 69901056 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69900072 69900173 69900072 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69899572 69899667 69899572 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69899399 69899470 69899399 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69899227 69899322 69899227 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69897718 69897822 69897718 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 CDS 69897443 69897484 69897443 ID=Msa1265520-mRNA-1:cds;Parent=Msa1265520-mRNA-1
chr8_2 three_prime_UTR 69897018 69897442 69897018 ID=Msa1265520-mRNA-1:three_prime_utr;Parent=Msa1265520-mRNA-1
Gene Sequence

>Msa1265520

ATGTACTATACTATTGTTCTTATGTATCACGAGTTTTCATGGATTCATTACTTGTTGGATCTTTTCCTAAGTCATGCTCATATTCATTCACCACCACTGGTGGGAATCTTTGGCGGAGTAAACGTTATGTCAACAATTGCTATTCAATTCCAACCAAGTTTAAATCATTATTGCGAAGGGGCAGAAGGACGACCTACATATCAAGAATGCAATAGAAAATTTGTTGTGAAAGCAGCCCCTGAACAATCTTTTGAATCCGAACATCCTGCTTTTGATCCAAAAAACATTTTGGACACTGTTAAAAATTCCCTGGATGCTTTCTACAGATTTTCCAGGCCACACACGGTTATTGGCACAGCATTAAGCATAATTTCGGTGTCTCTCCTTGCAGTGGAGAAATTATCAGATATATCCCCGCTATTTTTTACAGGTGTATTGGAGGCTGTAGTAGCTGCCCTGTTTATGAACATTTATATTGTTGGTTTGAATCAATTGTCCGATGTTGAAATAGACAAGATAAACAAACCATATCTTCCCTTGGCATCCGGAGAATATTCCTTTGCAACTGGTGCCATTATTGTTGTATCTTCTTCAATTCTGAGTTTTTGGCTTGCCTGGATTGTAGGTTCATGGCCATTGTTTTGGGCTCTTTTCATCAGTTTTGTGCTAGGGACGGCTTATTCCATCAACGTGCCCCTGTTGAGATGGAAGAGATTTGCAGTGCTTGCTGCTATGTGCATTCTTTCCGTTCGTGCTGTTATAGTTCAACTAGCATTTTTCCTTCACATGCAGACTTTTGTGTACAAGAGGCCAATTGTCTTTTCAAGACCATTGATCTTTGCAACTGCATTCATGAGCTTCTTCTCTGTAGTTATAGCATTGTTCAAGGATATACCCGATATTGAAGGAGATAAAATATTTGGCATCCAATCTTTTTCAGTACGTTTAGGTCAGAAGCGGGTATTTTGGATTTGTGTTACCCTTCTTGAATTGGCTTATGGAGTCTCCCTTGTAGTTGGAACAACATCTTCTTGCCTATGGAGTAAAATTGTTACGAGTCTGGGACATGCTGTACTTGCTTCAATTCTTTTCAATCATGCCAAATCTGTAGATTTGAAAAGCAAAGCTTCCATAACATCCTTCTACATGTTTATCTGGAAGCTATTTTACGCAGAGTACTTCCTCATACCTTTAGTTAGATGA

Protein sequence

>Msa1265520

MYYTIVLMYHEFSWIHYLLDLFLSHAHIHSPPLVGIFGGVNVMSTIAIQFQPSLNHYCEGAEGRPTYQECNRKFVVKAAPEQSFESEHPAFDPKNILDTVKNSLDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDISPLFFTGVLEAVVAALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIVVSSSILSFWLAWIVGSWPLFWALFISFVLGTAYSINVPLLRWKRFAVLAAMCILSVRAVIVQLAFFLHMQTFVYKRPIVFSRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIQSFSVRLGQKRVFWICVTLLELAYGVSLVVGTTSSCLWSKIVTSLGHAVLASILFNHAKSVDLKSKASITSFYMFIWKLFYAEYFLIPLVR*