AlfalfaGEDB | Msa1267830

M. sativa cultivar zhongmu-4 / Msa1267830

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267830	XP_003628788.1	98.936	376	2	2	1	374	1	376	0.0	753

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267830	sp\|Q9LQM3\|C3H12_ARATH	60.814	393	121	12	3	374	4	384	2.86e-131	384

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1267830	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017730	Msa1267830	0.811876	5.621647e-51	-8.615850e-47
Msa0159440	Msa1267830	0.812168	4.854901e-51	-8.615850e-47
Msa0177960	Msa1267830	0.844010	9.850457e-59	-8.615850e-47
Msa0215990	Msa1267830	0.804972	1.671254e-49	-8.615850e-47
Msa0377820	Msa1267830	0.871579	6.135452e-67	-8.615850e-47
Msa0426580	Msa1267830	0.848079	7.700764e-60	-8.615850e-47
Msa0472930	Msa1267830	0.874034	9.254154e-68	-8.615850e-47
Msa0517590	Msa1267830	0.837842	4.093278e-57	-8.615850e-47
Msa1159020	Msa1267830	0.802913	4.477546e-49	-8.615850e-47
Msa1175350	Msa1267830	0.821932	3.104332e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267830	MtrunA17_Chr8g0366501	98.936	376	2	2	1	374	1	376	0.0	753
Msa1267830	MtrunA17_Chr4g0063401	38.119	202	88	6	89	283	77	248	8.32e-36	131
Msa1267830	MtrunA17_Chr4g0063361	33.333	201	97	5	80	280	76	239	1.21e-27	109
Msa1267830	MtrunA17_Chr4g0063391	28.405	257	115	5	35	284	16	210	1.27e-25	103
Msa1267830	MtrunA17_Chr3g0098251	28.571	224	105	5	60	280	4	175	7.64e-22	92.4
Msa1267830	MtrunA17_Chr4g0063371	36.975	119	46	2	80	198	56	145	9.62e-17	78.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1267830	AT1G32360.1	60.814	393	121	12	3	374	4	384	2.91e-132	384
Msa1267830	AT3G19360.1	35.667	300	160	9	84	373	98	374	4.70e-45	159
Msa1267830	AT3G19360.2	35.667	300	160	9	84	373	98	374	4.70e-45	159
Msa1267830	AT2G35430.1	41.739	230	63	9	167	374	72	252	1.72e-41	146
Msa1267830	AT2G35430.1	38.012	171	68	7	26	191	31	168	4.26e-20	89.0

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Find 141 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCATTTGTTACCAA+AGG	0.546912	8_2:+73301343	None:intergenic
AAACTAGGATTTGTAATAAG+TGG	0.442008	8_2:-73301385	Msa1267830:CDS
AAAGTACAACTATCTCCATA+AGG	0.520248	8_2:+73301608	None:intergenic
AAAGTACTCGACCCAACCGT+CGG	0.626587	8_2:+73301704	None:intergenic
AAATGGCATTTGTTACCAAA+GGG	0.557541	8_2:+73301344	None:intergenic
AAATTACAGTTCGTTATATA+AGG	0.316371	8_2:+73301839	None:intergenic
AACTAGGATTTGTAATAAGT+GGG	0.496877	8_2:-73301384	Msa1267830:CDS
AAGGTCCCGATAAAATCAGT+AGG	0.622761	8_2:-73299834	Msa1267830:CDS
AATCTTGGAAACATGGAAAA+TGG	0.310585	8_2:-73299758	Msa1267830:three_prime_UTR
AATTACACAGATATGGAGGT+GGG	0.635355	8_2:-73300056	Msa1267830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTACAACTATCTCCATA+AGG	+	chr8_2:73299996-73300015	None:intergenic	30.0%
TTCCCAAAATTGTATCCAAA+TGG	+	chr8_2:73300467-73300486	None:intergenic	30.0%
CCAAAACAAAATTGACACTA+GGG	+	chr8_2:73300599-73300618	None:intergenic	30.0%
ACCAAAACAAAATTGACACT+AGG	+	chr8_2:73300600-73300619	None:intergenic	30.0%
ATTGCATAGATTACTCAAGT+CGG	+	chr8_2:73300704-73300723	None:intergenic	30.0%
ACTGTAAACCAAAAAACACT+TGG	+	chr8_2:73300869-73300888	None:intergenic	30.0%
GAAAAGAATAGTTTCATGAG+TGG	-	chr8_2:73300991-73301010	Msa1267830:intron	30.0%
ACTTTCATTGCTTTGATGTT+TGG	-	chr8_2:73301230-73301249	Msa1267830:intron	30.0%
AAACATGCACATAATGAACA+AGG	+	chr8_2:73301256-73301275	None:intergenic	30.0%
TTGTTCATTATGTGCATGTT+TGG	-	chr8_2:73301255-73301274	Msa1267830:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	73299450	73302173	73299450	ID=Msa1267830;Name=Msa1267830
chr8_2	mRNA	73299450	73302173	73299450	ID=Msa1267830-mRNA-1;Parent=Msa1267830;Name=Msa1267830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.5\|1\|1\|1\|2\|351\|374
chr8_2	exon	73299450	73300078	73299450	ID=Msa1267830-mRNA-1:exon:24858;Parent=Msa1267830-mRNA-1
chr8_2	exon	73301327	73302173	73301327	ID=Msa1267830-mRNA-1:exon:24857;Parent=Msa1267830-mRNA-1
chr8_2	CDS	73301327	73302173	73301327	ID=Msa1267830-mRNA-1:cds;Parent=Msa1267830-mRNA-1
chr8_2	CDS	73299801	73300078	73299801	ID=Msa1267830-mRNA-1:cds;Parent=Msa1267830-mRNA-1
chr8_2	three_prime_UTR	73299450	73299800	73299450	ID=Msa1267830-mRNA-1:three_prime_utr;Parent=Msa1267830-mRNA-1

Gene Sequence

>Msa1267830

ATGGATTACAACAGAGACGGCAACGTCGTTCAAATCATCACCACCGGCGGCGGAGCCGCCGATAGCTGGTCAACCGACCAAGCTGACTGGGCGACGGAAGATGAGTATCGTTACTGGAACGGAAACGACGCCGGCGGTGAAACAACTCCGTCTTCAAATTCACGTGCAGGAAGTGAGCCGCCGAGTAAGAAATCGAGAAGCAATTCGCAAGATGGTGGTGGTGGCAGTGGAGGAGGATCGAATCGCGCAAAAGCGATCGGGAAAATGTTTTTTAAGACAAAACTATGCTGTAAGTTTCGTGTGGGGACATGTCCTTATATAACGAACTGTAATTTTGCTCATAGTGTGGAGGAGCTGCGTCGGCCGCCGGAGAATTGGCAGGAGATTGTGGCTGCTCATGAAGAAGAGAGGAGTGTGATTGAGCAGCCGAGGGAAGAGTTTCAGATACCGACGGTTGGGTCGAGTACTTTTGTAGGGGAGAGTATGAATAATAGGTCTTATAAGGGGAGACATTGTAAGAAATTTTATACTGAAGAAGGTTGTCCTTATGGAGATAGTTGTACTTTTCTTCATGATGAGCAATCGAAGAATCGTGAAAGTGTGGCGATTAGTTTAGGTCCTGGTGGTTATGGTGGTGGTGGTGGTGGTGGAGGAGGAGGTGGTGGGAGTGTTGGGAGTGGTGGTGGTAGTGGGAGTGGTGTTGTTGTTGTTGCGGCTGGTGCAGCCGCGGTTGGGAATGGACCTAATTTGAAGCCTTCGAATTGGAAAACTAGGATTTGTAATAAGTGGGAGATGACTGGGTATTGTCCCTTTGGTAACAAATGCCATTTTGCTCATGGTGCTACAGAATTACACAGATATGGAGGTGGGCTTATGGAAGGAGAAAGCAGAGACGGTGTTTCTGTTGTTGCGTCTGACACAAAACAGGGTGTACCTTCCAAAACTCATGCTGATAATGTGGTTGCATCAAATCCTCCTACTGGTTCAGATGTTTATCATCTTGGAGTCCCTTCACAAAGACCTTCCATTGTGAGTCAGAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCCGATAAAATCAGTAGGATATATGGCGATTGGATCGATGACTTCGAATAG

Protein sequence

>Msa1267830

MDYNRDGNVVQIITTGGGAADSWSTDQADWATEDEYRYWNGNDAGGETTPSSNSRAGSEPPSKKSRSNSQDGGGGSGGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPENWQEIVAAHEEERSVIEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGGSVGSGGGSGSGVVVVAAGAAAVGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDGVSVVASDTKQGVPSKTHADNVVASNPPTGSDVYHLGVPSQRPSIVSQRPGQRAHQKWKGPDKISRIYGDWIDDFE*