AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1309850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309850 MtrunA17_Chr8g0336741 82.743 226 38 1 2 227 251 475 7.74e-137 392
Msa1309850 MtrunA17_Chr8g0336731 80.357 224 43 1 3 226 271 493 7.67e-133 383
Msa1309850 MtrunA17_Chr8g0336651 82.589 224 38 1 3 226 245 467 1.55e-126 386
Msa1309850 MtrunA17_Chr8g0336651 78.070 228 47 2 3 227 1020 1247 5.90e-115 355
Msa1309850 MtrunA17_Chr8g0336651 66.071 224 45 1 3 226 585 777 4.01e-93 296
Msa1309850 MtrunA17_Chr1g0153461 75.926 216 52 0 12 227 1 216 2.64e-122 346
Msa1309850 MtrunA17_Chr1g0153451 77.333 225 49 1 3 227 245 467 3.48e-122 355
Msa1309850 MtrunA17_Chr8g0336691 76.087 230 52 2 1 227 1154 1383 2.90e-112 350
Msa1309850 MtrunA17_Chr8g0336691 76.000 225 53 1 3 226 252 476 1.73e-107 337
Msa1309850 MtrunA17_Chr8g0336691 70.089 224 40 1 3 226 719 915 8.60e-101 318
Msa1309850 MtrunA17_Chr7g0232311 60.455 220 86 1 8 226 247 466 1.09e-93 282
Msa1309850 MtrunA17_Chr6g0459311 59.459 222 88 2 4 224 252 472 4.58e-91 275
Msa1309850 MtrunA17_Chr7g0275511 59.813 214 85 1 13 225 264 477 1.38e-90 275
Msa1309850 MtrunA17_Chr6g0486251 58.108 222 91 2 4 224 245 465 1.68e-89 271
Msa1309850 MtrunA17_Chr6g0486201 58.108 222 91 2 4 224 245 465 1.68e-89 271
Msa1309850 MtrunA17_Chr8g0334851 58.879 214 86 2 14 226 260 472 1.64e-88 269
Msa1309850 MtrunA17_Chr7g0232391 60.748 214 83 1 13 226 256 468 3.55e-88 268
Msa1309850 MtrunA17_Chr8g0339441 60.648 216 82 2 14 226 217 432 6.31e-88 266
Msa1309850 MtrunA17_Chr6g0449931 58.482 224 91 1 5 226 247 470 3.94e-87 265
Msa1309850 MtrunA17_Chr8g0335161 57.466 221 91 3 7 226 251 469 2.28e-86 263
Msa1309850 MtrunA17_Chr8g0339631 58.667 225 91 2 3 226 248 471 3.51e-86 263
Msa1309850 MtrunA17_Chr8g0339461 55.263 228 99 1 3 227 248 475 9.24e-86 262
Msa1309850 MtrunA17_Chr8g0335141 57.466 221 91 3 7 226 253 471 1.08e-85 261
Msa1309850 MtrunA17_Chr7g0232411 58.411 214 88 1 13 226 256 468 2.16e-85 261
Msa1309850 MtrunA17_Chr8g0373301 58.447 219 89 1 7 225 252 468 2.30e-85 261
Msa1309850 MtrunA17_Chr7g0232401 58.065 217 89 1 3 219 249 463 3.17e-85 260
Msa1309850 MtrunA17_Chr7g0232341 59.070 215 86 2 13 226 256 469 1.06e-84 259
Msa1309850 MtrunA17_Chr8g0339451 55.066 227 99 2 3 226 240 466 3.71e-83 255
Msa1309850 MtrunA17_Chr8g0339601 54.260 223 99 2 7 226 111 333 8.73e-83 249
Msa1309850 MtrunA17_Chr8g0347281 54.206 214 97 1 14 226 262 475 3.39e-82 253
Msa1309850 MtrunA17_Chr8g0347271 53.271 214 99 1 14 226 263 476 1.00e-81 251
Msa1309850 MtrunA17_Chr7g0232331 56.444 225 94 3 5 226 246 469 3.91e-81 250
Msa1309850 MtrunA17_Chr8g0334861 54.299 221 94 4 10 226 249 466 3.24e-80 248
Msa1309850 MtrunA17_Chr8g0361371 50.000 230 109 3 4 227 245 474 8.91e-78 241
Msa1309850 MtrunA17_Chr8g0334831 48.954 239 107 5 4 227 244 482 1.69e-71 225
Msa1309850 MtrunA17_Chr8g0337381 74.809 131 31 1 97 227 1 129 3.35e-69 208
Msa1309850 MtrunA17_Chr6g0462551 43.750 224 115 3 2 224 252 465 5.10e-59 193
Msa1309850 MtrunA17_Chr5g0403641 43.750 224 119 3 2 220 278 499 6.28e-59 193
Msa1309850 MtrunA17_Chr3g0079731 42.857 224 118 5 7 223 260 480 6.96e-57 187
Msa1309850 MtrunA17_Chr6g0462531 43.836 219 112 3 6 224 258 465 1.14e-56 186
Msa1309850 MtrunA17_Chr6g0462521 42.922 219 114 3 6 224 244 451 4.32e-56 185
Msa1309850 MtrunA17_Chr7g0232351 66.917 133 43 1 5 137 247 378 5.75e-56 182
Msa1309850 MtrunA17_Chr6g0462541 43.379 219 113 2 6 224 257 464 1.79e-55 184
Msa1309850 MtrunA17_Chr8g0370941 44.000 225 108 5 14 220 261 485 5.08e-55 183
Msa1309850 MtrunA17_Chr6g0462571 44.144 222 113 3 3 224 252 462 4.03e-54 180
Msa1309850 MtrunA17_Chr5g0448521 40.376 213 116 3 15 219 254 463 2.51e-47 162
Msa1309850 MtrunA17_Chr1g0173121 41.232 211 117 3 4 212 246 451 7.18e-47 160
Msa1309850 MtrunA17_Chr3g0118721 40.580 207 107 5 13 219 95 285 1.13e-46 156
Msa1309850 MtrunA17_Chr5g0442491 39.823 226 125 4 2 219 248 470 2.65e-46 159
Msa1309850 MtrunA17_Chr4g0044511 40.930 215 109 4 13 219 296 500 2.66e-46 160
Msa1309850 MtrunA17_Chr8g0366391 37.768 233 125 3 1 226 261 480 2.96e-46 159
Msa1309850 MtrunA17_Chr7g0265141 41.667 228 103 5 4 212 258 474 3.29e-46 159
Msa1309850 MtrunA17_Chr3g0112771 45.411 207 98 4 14 220 257 448 5.78e-46 158
Msa1309850 MtrunA17_Chr5g0442541 39.286 224 125 3 4 219 241 461 1.03e-45 158
Msa1309850 MtrunA17_Chr4g0014061 40.000 220 108 5 13 220 262 469 1.44e-45 157
Msa1309850 MtrunA17_Chr5g0442581 40.889 225 122 4 3 219 251 472 2.52e-45 158
Msa1309850 MtrunA17_Chr3g0079711 39.894 188 110 2 41 225 3 190 3.05e-45 149
Msa1309850 MtrunA17_Chr8g0382021 43.269 208 98 5 15 212 280 477 3.22e-45 157
Msa1309850 MtrunA17_Chr5g0442561 39.823 226 123 5 3 220 249 469 9.76e-45 155
Msa1309850 MtrunA17_Chr4g0053321 38.350 206 119 2 14 219 278 475 2.38e-44 155
Msa1309850 MtrunA17_Chr1g0159551 40.099 202 112 3 14 212 253 448 2.81e-44 154
Msa1309850 MtrunA17_Chr1g0207981 38.164 207 115 2 14 220 276 469 5.01e-44 154
Msa1309850 MtrunA17_Chr3g0118691 39.614 207 109 5 13 219 288 478 8.76e-44 153
Msa1309850 MtrunA17_Chr5g0442521 40.465 215 116 5 14 219 260 471 6.64e-43 150
Msa1309850 MtrunA17_Chr3g0118671 39.423 208 110 4 12 219 278 469 7.00e-43 150
Msa1309850 MtrunA17_Chr4g0053501 37.379 206 121 2 14 219 263 460 7.63e-43 150
Msa1309850 MtrunA17_Chr4g0066131 36.818 220 121 5 13 220 258 471 1.74e-42 149
Msa1309850 MtrunA17_Chr6g0463861 36.323 223 124 4 9 219 253 469 2.42e-42 149
Msa1309850 MtrunA17_Chr5g0426401 42.000 200 97 5 14 212 118 299 2.98e-42 145
Msa1309850 MtrunA17_Chr5g0414331 38.647 207 110 2 14 220 261 450 4.68e-42 148
Msa1309850 MtrunA17_Chr5g0414321 39.130 207 109 3 14 220 259 448 5.19e-42 148
Msa1309850 MtrunA17_Chr4g0066221 39.810 211 109 5 14 212 265 469 5.47e-42 148
Msa1309850 MtrunA17_Chr4g0066151 36.073 219 122 4 13 219 263 475 5.50e-42 148
Msa1309850 MtrunA17_Chr5g0442511 37.778 225 127 5 3 219 270 489 6.76e-42 148
Msa1309850 MtrunA17_Chr6g0454221 38.500 200 106 4 13 212 37 219 8.93e-42 144
Msa1309850 MtrunA17_Chr6g0454151 39.500 200 104 4 13 212 284 466 1.16e-41 147
Msa1309850 MtrunA17_Chr5g0419761 41.096 219 108 6 13 219 272 481 1.36e-41 147
Msa1309850 MtrunA17_Chr6g0454201 39.801 201 104 3 12 212 286 469 1.46e-41 147
Msa1309850 MtrunA17_Chr5g0440421 37.674 215 120 4 13 220 283 490 1.55e-41 147
Msa1309850 MtrunA17_Chr7g0243631 40.000 225 110 5 15 226 277 489 2.45e-41 147
Msa1309850 MtrunA17_Chr6g0453951 39.720 214 108 5 13 222 333 529 3.89e-41 147
Msa1309850 MtrunA17_Chr4g0072761 38.073 218 113 4 2 219 253 448 4.97e-41 145
Msa1309850 MtrunA17_Chr7g0243931 40.265 226 111 6 13 226 280 493 6.62e-41 145
Msa1309850 MtrunA17_Chr4g0060511 39.823 226 108 6 15 226 279 490 9.41e-41 145
Msa1309850 MtrunA17_Chr3g0118771 39.048 210 112 5 10 219 291 484 1.20e-40 145
Msa1309850 MtrunA17_Chr6g0454331 38.500 200 106 3 13 212 285 467 1.23e-40 144
Msa1309850 MtrunA17_Chr8g0359821 37.500 200 108 4 13 212 284 466 1.25e-40 144
Msa1309850 MtrunA17_Chr3g0078841 37.019 208 114 3 12 219 283 473 1.26e-40 144
Msa1309850 MtrunA17_Chr6g0453961 39.000 200 105 4 13 212 296 478 1.48e-40 144
Msa1309850 MtrunA17_Chr6g0454271 38.000 200 107 3 13 212 93 275 1.54e-40 140
Msa1309850 MtrunA17_Chr5g0426431 41.346 208 103 6 13 219 284 473 3.35e-40 143
Msa1309850 MtrunA17_Chr6g0454141 39.500 200 104 4 13 212 286 468 3.44e-40 143
Msa1309850 MtrunA17_Chr7g0249961 36.538 208 114 3 13 220 67 256 3.74e-40 139
Msa1309850 MtrunA17_Chr3g0118701 37.681 207 113 5 13 219 288 478 4.47e-40 143
Msa1309850 MtrunA17_Chr5g0442601 37.333 225 128 4 3 219 652 871 4.59e-40 146
Msa1309850 MtrunA17_Chr5g0442601 44.242 165 77 4 3 160 177 333 4.19e-37 137
Msa1309850 MtrunA17_Chr3g0118711 37.019 208 115 4 13 220 286 477 4.77e-40 143
Msa1309850 MtrunA17_Chr6g0464861 38.498 213 113 3 8 220 256 450 6.91e-40 142
Msa1309850 MtrunA17_Chr7g0265051 39.070 215 107 5 15 217 276 478 7.51e-40 143
Msa1309850 MtrunA17_Chr5g0423981 37.500 200 108 3 13 212 251 433 9.70e-40 141
Msa1309850 MtrunA17_Chr7g0217881 38.164 207 111 3 13 219 268 457 1.11e-39 142
Msa1309850 MtrunA17_Chr6g0454291 38.000 200 107 3 13 212 283 465 1.32e-39 142
Msa1309850 MtrunA17_Chr7g0275681 40.566 212 98 6 14 212 273 469 1.38e-39 142
Msa1309850 MtrunA17_Chr7g0243801 38.938 226 114 5 13 226 266 479 1.44e-39 142
Msa1309850 MtrunA17_Chr2g0302991 38.208 212 116 5 14 219 256 458 2.05e-39 141
Msa1309850 MtrunA17_Chr6g0464841 37.559 213 115 3 8 220 257 451 2.47e-39 140
Msa1309850 MtrunA17_Chr6g0464871 37.500 216 117 3 5 220 266 463 2.62e-39 140
Msa1309850 MtrunA17_Chr7g0243771 38.938 226 114 5 13 226 265 478 3.11e-39 141
Msa1309850 MtrunA17_Chr4g0044521 39.726 219 107 6 14 219 256 462 4.13e-39 140
Msa1309850 MtrunA17_Chr6g0454121 36.232 207 115 4 13 219 285 474 4.77e-39 140
Msa1309850 MtrunA17_Chr7g0243761 43.500 200 89 6 15 204 275 460 9.24e-39 139
Msa1309850 MtrunA17_Chr6g0454341 35.266 207 117 3 13 219 284 473 9.80e-39 139
Msa1309850 MtrunA17_Chr7g0265101 38.140 215 109 5 15 217 278 480 1.06e-38 140
Msa1309850 MtrunA17_Chr7g0249981 37.019 208 113 3 13 220 274 463 1.17e-38 139
Msa1309850 MtrunA17_Chr7g0265041 40.376 213 102 5 14 212 276 477 1.21e-38 139
Msa1309850 MtrunA17_Chr4g0050341 35.681 213 121 4 12 224 295 491 1.26e-38 139
Msa1309850 MtrunA17_Chr6g0454261 37.000 200 109 3 13 212 286 468 1.44e-38 139
Msa1309850 MtrunA17_Chr7g0243681 39.450 218 107 5 15 219 270 475 1.45e-38 139
Msa1309850 MtrunA17_Chr6g0454211 37.500 200 108 3 13 212 573 755 1.56e-38 141
Msa1309850 MtrunA17_Chr6g0454211 36.000 125 36 4 13 137 156 236 2.19e-15 74.7
Msa1309850 MtrunA17_Chr5g0428081 37.963 216 117 5 8 212 259 468 1.74e-38 139
Msa1309850 MtrunA17_Chr7g0243871 37.946 224 115 6 15 226 264 475 1.79e-38 139
Msa1309850 MtrunA17_Chr7g0265151 38.967 213 104 4 14 212 272 472 2.16e-38 139
Msa1309850 MtrunA17_Chr4g0066281 37.327 217 118 5 13 219 254 462 2.25e-38 138
Msa1309850 MtrunA17_Chr6g0454301 36.715 207 114 4 13 219 537 726 2.47e-38 140
Msa1309850 MtrunA17_Chr6g0454301 37.000 200 109 3 13 212 36 218 3.42e-36 134
Msa1309850 MtrunA17_Chr2g0278711 38.462 208 114 3 13 220 280 473 2.91e-38 138
Msa1309850 MtrunA17_Chr7g0235051 40.952 210 100 6 15 212 245 442 3.35e-38 138
Msa1309850 MtrunA17_Chr8g0336331 36.232 207 115 3 13 219 283 472 3.97e-38 138
Msa1309850 MtrunA17_Chr6g0454191 37.500 200 108 3 13 212 287 469 4.22e-38 138
Msa1309850 MtrunA17_Chr1g0207951 38.140 215 104 5 3 214 373 561 4.52e-38 140
Msa1309850 MtrunA17_Chr1g0207951 38.049 205 100 5 15 214 917 1099 1.01e-33 127
Msa1309850 MtrunA17_Chr6g0464921 35.545 211 119 2 10 220 259 452 4.61e-38 137
Msa1309850 MtrunA17_Chr7g0218811 39.423 208 107 5 12 219 257 445 6.08e-38 137
Msa1309850 MtrunA17_Chr6g0452771 39.000 200 105 3 13 212 286 468 6.69e-38 137
Msa1309850 MtrunA17_Chr1g0207971 38.140 215 105 5 3 214 255 444 6.85e-38 137
Msa1309850 MtrunA17_Chr6g0454131 35.266 207 117 4 13 219 285 474 8.08e-38 137
Msa1309850 MtrunA17_Chr3g0092641 38.942 208 108 6 13 219 284 473 8.28e-38 137
Msa1309850 MtrunA17_Chr7g0243781 38.496 226 103 8 13 219 263 471 9.37e-38 137
Msa1309850 MtrunA17_Chr2g0302961 36.792 212 113 5 17 219 262 461 1.19e-37 136
Msa1309850 MtrunA17_Chr8g0377921 40.686 204 103 4 14 214 266 454 1.22e-37 136
Msa1309850 MtrunA17_Chr6g0454361 36.408 206 114 4 14 219 288 476 1.24e-37 136
Msa1309850 MtrunA17_Chr3g0098111 37.054 224 119 6 7 225 265 471 1.32e-37 136
Msa1309850 MtrunA17_Chr5g0420801 36.279 215 126 4 7 220 251 455 1.38e-37 136
Msa1309850 MtrunA17_Chr6g0454321 36.923 195 106 3 13 207 284 461 1.69e-37 138
Msa1309850 MtrunA17_Chr4g0066261 35.780 218 123 4 13 219 266 477 1.75e-37 136
Msa1309850 MtrunA17_Chr1g0207931 38.942 208 111 5 7 212 293 486 1.93e-37 136
Msa1309850 MtrunA17_Chr6g0464881 34.742 213 121 3 8 220 257 451 2.06e-37 135
Msa1309850 MtrunA17_Chr4g0011051 35.498 231 121 6 13 227 276 494 2.22e-37 136
Msa1309850 MtrunA17_Chr6g0454181 36.500 200 110 3 13 212 286 468 2.57e-37 135
Msa1309850 MtrunA17_Chr7g0243861 38.393 224 114 5 15 226 279 490 2.77e-37 135
Msa1309850 MtrunA17_Chr8g0355221 39.207 227 114 7 4 219 269 482 2.83e-37 135
Msa1309850 MtrunA17_Chr8g0374901 35.377 212 119 4 13 212 262 467 4.04e-37 135
Msa1309850 MtrunA17_Chr2g0294921 36.111 216 121 5 8 212 410 619 4.06e-37 137
Msa1309850 MtrunA17_Chr5g0429711 37.946 224 113 7 2 219 254 457 4.53e-37 135
Msa1309850 MtrunA17_Chr1g0165701 38.767 227 113 6 4 219 268 479 5.92e-37 135
Msa1309850 MtrunA17_Chr7g0243711 38.249 217 110 5 15 219 108 312 6.27e-37 132
Msa1309850 MtrunA17_Chr6g0454401 37.500 200 108 3 13 212 287 469 9.21e-37 134
Msa1309850 MtrunA17_Chr8g0374971 34.906 212 120 4 13 212 264 469 9.89e-37 134
Msa1309850 MtrunA17_Chr7g0243911 39.000 200 98 5 15 202 22 209 1.00e-36 128
Msa1309850 MtrunA17_Chr3g0112761 38.140 215 117 6 14 227 254 453 1.07e-36 134
Msa1309850 MtrunA17_Chr5g0401851 37.668 223 116 6 15 226 276 486 1.20e-36 134
Msa1309850 MtrunA17_Chr4g0032331 40.385 208 107 5 14 220 255 446 1.62e-36 133
Msa1309850 MtrunA17_Chr7g0243951 38.053 226 115 6 13 226 274 486 2.09e-36 133
Msa1309850 MtrunA17_Chr8g0350881 35.849 212 118 4 13 212 264 469 2.31e-36 133
Msa1309850 MtrunA17_Chr8g0365811 37.850 214 120 5 3 214 746 948 2.51e-36 135
Msa1309850 MtrunA17_Chr8g0365811 39.691 194 104 4 3 194 264 446 9.86e-34 127
Msa1309850 MtrunA17_Chr2g0294931 35.814 215 121 5 9 212 262 470 2.56e-36 133
Msa1309850 MtrunA17_Chr5g0429681 39.623 212 105 7 15 219 300 495 4.08e-36 132
Msa1309850 MtrunA17_Chr8g0374931 34.783 230 133 5 8 226 261 484 5.25e-36 132
Msa1309850 MtrunA17_Chr7g0243851 36.283 226 120 5 13 226 232 445 7.66e-36 131
Msa1309850 MtrunA17_Chr8g0361411 38.350 206 109 5 17 220 261 450 8.13e-36 131
Msa1309850 MtrunA17_Chr4g0044481 40.909 154 78 2 7 160 257 397 9.09e-36 130
Msa1309850 MtrunA17_Chr7g0218831 37.264 212 113 7 14 225 249 440 9.83e-36 130
Msa1309850 MtrunA17_Chr2g0329111 37.915 211 104 6 14 210 266 463 1.21e-35 131
Msa1309850 MtrunA17_Chr4g0044501 35.814 215 117 4 10 219 270 468 1.80e-35 130
Msa1309850 MtrunA17_Chr8g0367221 37.745 204 115 2 6 209 1539 1730 2.14e-35 132
Msa1309850 MtrunA17_Chr8g0367221 36.500 200 117 1 17 216 1058 1247 1.48e-34 130
Msa1309850 MtrunA17_Chr8g0367221 34.314 204 124 1 17 220 271 464 9.51e-33 125
Msa1309850 MtrunA17_Chr2g0307961 39.512 205 102 6 17 219 280 464 2.66e-35 130
Msa1309850 MtrunA17_Chr7g0218311 37.441 211 115 5 13 212 268 472 3.02e-35 130
Msa1309850 MtrunA17_Chr6g0463851 32.314 229 134 5 13 226 266 488 4.40e-35 130
Msa1309850 MtrunA17_Chr1g0207831 37.220 223 107 7 4 219 263 459 5.45e-35 129
Msa1309850 MtrunA17_Chr8g0369341 36.574 216 123 5 8 219 259 464 6.50e-35 129
Msa1309850 MtrunA17_Chr5g0401721 35.437 206 122 4 14 219 272 466 6.59e-35 129
Msa1309850 MtrunA17_Chr4g0066201 33.482 224 131 4 13 226 262 477 8.23e-35 129
Msa1309850 MtrunA17_Chr8g0374941 34.906 212 120 5 13 212 1201 1406 9.75e-35 130
Msa1309850 MtrunA17_Chr8g0374941 34.135 208 119 5 13 208 263 464 9.90e-34 128
Msa1309850 MtrunA17_Chr8g0374941 33.659 205 118 4 13 205 728 926 4.03e-33 126
Msa1309850 MtrunA17_Chr7g0218841 37.264 212 113 7 14 225 250 441 1.00e-34 128
Msa1309850 MtrunA17_Chr7g0218821 37.931 203 107 5 14 216 260 443 1.35e-34 128
Msa1309850 MtrunA17_Chr7g0243611 46.622 148 65 3 15 160 136 271 1.87e-34 124
Msa1309850 MtrunA17_Chr2g0294941 34.615 208 119 4 9 205 160 361 3.03e-34 125
Msa1309850 MtrunA17_Chr7g0249931 34.783 207 116 4 15 220 292 480 4.51e-34 127
Msa1309850 MtrunA17_Chr4g0066171 33.036 224 132 5 13 226 264 479 6.31e-34 126
Msa1309850 MtrunA17_Chr3g0118661 35.238 210 119 3 10 219 283 475 7.81e-34 126
Msa1309850 MtrunA17_Chr3g0121991 37.313 201 118 3 15 214 343 536 8.16e-34 127
Msa1309850 MtrunA17_Chr1g0179901 41.401 157 80 4 5 161 274 418 1.14e-33 126
Msa1309850 MtrunA17_Chr3g0122001 38.537 205 117 4 17 219 272 469 2.57e-33 126
Msa1309850 MtrunA17_Chr3g0122001 36.765 204 121 3 17 219 752 948 3.36e-33 126
Msa1309850 MtrunA17_Chr5g0416741 35.426 223 120 5 15 226 277 486 2.98e-33 125
Msa1309850 MtrunA17_Chr5g0412101 36.893 206 111 6 14 219 280 466 3.10e-33 124
Msa1309850 MtrunA17_Chr6g0454171 34.783 207 102 5 13 219 132 305 4.01e-33 121
Msa1309850 MtrunA17_Chr7g0218791 36.453 203 110 4 14 216 257 440 4.14e-33 124
Msa1309850 MtrunA17_Chr4g0072771 33.945 218 122 4 2 219 266 461 4.78e-33 124
Msa1309850 MtrunA17_Chr8g0377941 36.538 208 109 4 15 219 270 457 5.26e-33 124
Msa1309850 MtrunA17_Chr7g0265111 34.513 226 127 4 5 219 296 511 5.67e-33 124
Msa1309850 MtrunA17_Chr5g0412131 37.379 206 110 6 14 219 279 465 5.83e-33 124
Msa1309850 MtrunA17_Chr5g0431441 37.073 205 103 4 12 212 272 454 6.18e-33 124
Msa1309850 MtrunA17_Chr8g0336321 40.884 181 95 3 17 197 271 439 7.50e-33 123
Msa1309850 MtrunA17_Chr1g0207861 37.054 224 119 7 7 225 264 470 7.53e-33 124
Msa1309850 MtrunA17_Chr4g0042891 34.513 226 136 3 4 227 254 469 7.98e-33 123
Msa1309850 MtrunA17_Chr5g0412111 33.937 221 123 5 3 219 256 457 8.03e-33 123
Msa1309850 MtrunA17_Chr8g0355011 32.673 202 119 3 21 222 176 360 9.48e-33 121
Msa1309850 MtrunA17_Chr5g0427571 39.344 183 99 3 15 197 103 273 9.71e-33 120
Msa1309850 MtrunA17_Chr5g0419771 33.778 225 120 6 3 212 291 501 1.23e-32 123
Msa1309850 MtrunA17_Chr5g0410941 35.407 209 118 5 15 212 276 478 1.46e-32 123
Msa1309850 MtrunA17_Chr5g0393591 33.929 224 110 7 4 224 248 436 1.56e-32 122
Msa1309850 MtrunA17_Chr3g0092031 32.642 193 116 1 12 204 1 179 3.64e-32 116
Msa1309850 MtrunA17_Chr8g0380531 33.772 228 132 4 1 224 246 458 4.16e-32 121
Msa1309850 MtrunA17_Chr7g0250001 32.212 208 123 4 13 220 255 444 6.71e-32 120
Msa1309850 MtrunA17_Chr1g0161351 36.239 218 117 6 7 219 293 493 6.97e-32 121
Msa1309850 MtrunA17_Chr8g0336251 40.884 181 95 4 17 197 271 439 7.69e-32 120
Msa1309850 MtrunA17_Chr5g0431361 34.135 208 109 4 15 216 261 446 2.05e-31 119
Msa1309850 MtrunA17_Chr4g0069611 35.638 188 107 1 17 204 269 442 6.80e-31 118
Msa1309850 MtrunA17_Chr5g0409591 33.163 196 125 3 13 205 273 465 8.27e-31 118
Msa1309850 MtrunA17_Chr7g0243811 45.517 145 65 3 15 157 240 372 1.19e-30 116
Msa1309850 MtrunA17_Chr6g0454371 33.880 183 104 3 37 219 1 166 2.91e-30 110
Msa1309850 MtrunA17_Chr6g0466831 33.679 193 114 1 12 204 267 445 3.06e-30 116
Msa1309850 MtrunA17_Chr4g0042931 35.211 213 127 4 17 227 264 467 3.19e-30 116
Msa1309850 MtrunA17_Chr7g0241781 34.896 192 105 4 7 198 233 404 6.88e-30 115
Msa1309850 MtrunA17_Chr5g0431401 31.390 223 123 5 3 219 246 444 8.57e-30 115
Msa1309850 MtrunA17_Chr6g0454351 35.870 184 101 4 36 219 294 460 9.86e-30 115
Msa1309850 MtrunA17_Chr4g0039881 36.269 193 109 3 12 204 241 419 1.25e-29 114
Msa1309850 MtrunA17_Chr2g0278721 33.838 198 117 1 7 204 264 447 1.44e-29 115
Msa1309850 MtrunA17_Chr2g0278721 35.233 193 109 4 7 198 775 952 6.07e-28 111
Msa1309850 MtrunA17_Chr6g0466841 33.161 193 115 1 12 204 267 445 1.94e-29 114
Msa1309850 MtrunA17_Chr2g0278741 32.420 219 133 2 7 225 346 549 3.19e-29 114
Msa1309850 MtrunA17_Chr5g0431421 32.569 218 117 5 3 214 246 439 8.34e-29 112
Msa1309850 MtrunA17_Chr6g0463891 32.143 224 127 5 15 226 277 487 1.58e-28 112
Msa1309850 MtrunA17_Chr4g0029151 38.202 178 101 3 17 193 265 434 1.77e-28 111
Msa1309850 MtrunA17_Chr2g0302851 33.854 192 113 1 7 198 260 437 2.81e-28 110
Msa1309850 MtrunA17_Chr5g0448551 37.989 179 88 4 12 183 257 419 3.67e-28 110
Msa1309850 MtrunA17_Chr8g0336261 37.662 154 78 4 37 190 1 136 6.87e-28 103
Msa1309850 MtrunA17_Chr3g0118751 32.701 211 95 4 10 219 276 440 8.21e-28 109
Msa1309850 MtrunA17_Chr6g0464091 33.161 193 115 1 12 204 274 452 1.49e-27 108
Msa1309850 MtrunA17_Chr4g0029131 37.079 178 103 3 17 193 257 426 1.76e-27 109
Msa1309850 MtrunA17_Chr5g0432731 31.308 214 113 4 15 219 104 292 4.46e-27 105
Msa1309850 MtrunA17_Chr5g0431371 33.010 206 110 5 15 214 256 439 6.05e-27 107
Msa1309850 MtrunA17_Chr7g0241801 32.292 192 110 2 7 198 233 404 2.85e-26 105
Msa1309850 MtrunA17_Chr1g0196851 35.955 178 105 3 13 189 293 462 6.42e-26 104
Msa1309850 MtrunA17_Chr6g0454251 42.400 125 59 3 13 137 283 394 1.99e-25 102
Msa1309850 MtrunA17_Chr8g0357361 36.424 151 82 2 10 160 113 249 5.97e-25 99.0
Msa1309850 MtrunA17_Chr6g0454231 38.889 144 79 3 70 213 73 207 1.02e-24 101
Msa1309850 MtrunA17_Chr4g0066141 36.667 150 83 3 82 219 198 347 2.77e-24 99.0
Msa1309850 MtrunA17_Chr3g0106251 31.188 202 113 3 15 212 103 282 3.32e-24 97.8
Msa1309850 MtrunA17_Chr5g0416821 31.390 223 117 6 15 226 279 476 5.54e-24 99.4
Msa1309850 MtrunA17_Chr3g0106231 32.178 202 111 4 15 212 261 440 6.10e-24 99.0
Msa1309850 MtrunA17_Chr7g0231631 31.905 210 117 5 15 219 67 255 4.18e-23 94.4
Msa1309850 MtrunA17_Chr5g0431431 36.905 168 75 4 15 180 206 344 6.04e-23 95.1
Msa1309850 MtrunA17_Chr4g0040691 32.086 187 114 2 16 200 260 435 1.32e-22 95.1
Msa1309850 MtrunA17_Chr2g0283041 32.948 173 104 3 13 184 254 415 8.60e-22 92.8
Msa1309850 MtrunA17_Chr6g0482061 27.230 213 141 4 15 224 279 480 1.53e-21 92.4
Msa1309850 MtrunA17_Chr6g0449971 51.899 79 38 0 148 226 2 80 2.71e-21 84.3
Msa1309850 MtrunA17_Chr8g0334841 67.143 70 18 3 15 80 88 156 5.49e-21 86.3
Msa1309850 MtrunA17_Chr4g0040711 31.383 188 114 4 16 200 260 435 2.13e-20 89.0
Msa1309850 MtrunA17_Chr1g0207881 37.795 127 70 4 91 212 251 373 6.99e-20 87.0
Msa1309850 MtrunA17_Chr7g0243731 46.753 77 41 0 91 167 2 78 1.01e-19 80.1
Msa1309850 MtrunA17_Chr2g0319761 32.275 189 113 5 16 200 258 435 1.58e-17 80.9
Msa1309850 MtrunA17_Chr2g0321331 33.540 161 78 4 25 184 94 226 3.50e-17 78.2
Msa1309850 MtrunA17_Chr2g0319731 33.918 171 100 4 16 184 275 434 1.28e-15 75.1
Msa1309850 MtrunA17_Chr4g0029161 32.022 178 84 6 17 193 257 398 1.45e-14 72.0
Msa1309850 MtrunA17_Chr2g0319791 33.333 174 103 4 13 184 255 417 1.52e-14 72.0
Msa1309850 MtrunA17_Chr2g0319751 32.759 174 104 4 13 184 732 894 3.68e-14 71.2
Msa1309850 MtrunA17_Chr2g0319751 35.922 103 64 2 84 184 291 393 3.02e-12 65.5
Msa1309850 MtrunA17_Chr6g0454391 45.902 61 31 1 114 174 13 71 1.30e-12 62.8
Msa1309850 MtrunA17_Chr2g0319801 32.749 171 102 4 16 184 258 417 1.41e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1309850 AT4G01070.1 57.547 212 90 0 13 224 257 468 6.61e-87 265
Msa1309850 AT1G01420.1 53.153 222 103 1 3 224 247 467 5.73e-82 253
Msa1309850 AT1G01420.2 53.153 222 103 1 3 224 250 470 6.76e-82 253
Msa1309850 AT1G01390.1 52.830 212 100 0 14 225 258 469 1.14e-75 236
Msa1309850 AT1G01390.2 52.830 212 100 0 14 225 275 486 1.66e-75 236
Msa1309850 AT4G36770.1 49.246 199 96 3 11 205 248 445 2.25e-62 201
Msa1309850 AT3G50740.1 47.964 221 107 5 14 227 258 477 1.15e-60 197
Msa1309850 AT5G66690.1 48.000 200 99 3 15 210 254 452 2.58e-56 186
Msa1309850 AT5G26310.1 48.168 191 92 4 17 202 256 444 5.89e-55 182
Msa1309850 AT3G16520.3 41.475 217 117 3 7 223 253 459 8.04e-55 182
Msa1309850 AT2G18570.1 44.976 209 105 4 17 220 260 463 6.25e-54 180
Msa1309850 AT2G18560.1 44.976 209 105 4 17 220 170 373 8.04e-53 174
Msa1309850 AT3G16520.2 42.079 202 107 3 7 208 253 444 6.69e-52 174
Msa1309850 AT3G16520.1 42.079 202 107 3 7 208 253 444 6.81e-52 174
Msa1309850 AT4G15260.1 40.271 221 117 5 7 218 134 348 1.54e-49 166
Msa1309850 AT2G15490.1 41.667 204 107 3 13 212 274 469 3.40e-48 165
Msa1309850 AT2G15480.1 39.706 204 108 2 13 212 277 469 5.80e-48 164
Msa1309850 AT3G21800.1 39.474 228 121 5 8 223 256 478 5.88e-48 164
Msa1309850 AT2G15490.3 41.667 204 104 3 13 212 274 466 1.21e-47 163
Msa1309850 AT3G21790.1 37.557 221 124 4 8 219 259 474 4.96e-47 162
Msa1309850 AT1G07260.1 39.815 216 111 5 2 212 259 460 5.70e-47 162
Msa1309850 AT2G15480.2 39.070 215 104 4 13 212 277 479 9.84e-47 161
Msa1309850 AT2G31750.1 38.605 215 107 4 13 222 259 453 1.23e-46 160
Msa1309850 AT2G31750.2 39.070 215 106 4 13 222 259 453 3.03e-46 160
Msa1309850 AT3G21750.1 39.556 225 122 6 5 218 245 466 1.32e-45 158
Msa1309850 AT1G05675.1 37.981 208 112 2 13 220 259 449 3.32e-45 156
Msa1309850 AT1G07250.1 40.488 205 105 5 13 213 271 462 3.42e-45 157
Msa1309850 AT4G34138.1 39.512 205 105 3 13 212 277 467 7.88e-45 156
Msa1309850 AT3G53160.1 41.485 229 111 6 4 219 260 478 1.15e-44 155
Msa1309850 AT4G34131.1 37.981 208 111 3 10 212 274 468 1.38e-43 152
Msa1309850 AT2G36780.1 41.284 218 107 4 13 219 277 484 1.52e-43 153
Msa1309850 AT2G36770.1 40.826 218 108 5 13 219 277 484 3.98e-43 152
Msa1309850 AT1G05680.1 37.559 213 116 2 8 220 254 449 4.04e-43 151
Msa1309850 AT3G21760.1 40.278 216 115 5 5 212 260 469 9.85e-43 150
Msa1309850 AT4G15280.1 36.652 221 127 4 7 219 254 469 1.55e-42 150
Msa1309850 AT2G36800.1 40.000 225 110 5 8 219 271 483 2.07e-42 150
Msa1309850 AT4G15280.2 36.652 221 127 4 7 219 286 501 2.19e-42 150
Msa1309850 AT2G29750.1 40.758 211 106 7 7 213 267 462 2.79e-42 149
Msa1309850 AT2G29710.1 37.209 215 116 5 2 212 252 451 1.09e-41 147
Msa1309850 AT3G21780.1 37.727 220 124 4 8 219 250 464 1.62e-41 147
Msa1309850 AT2G29740.1 40.686 204 104 5 13 212 273 463 2.11e-41 147
Msa1309850 AT2G36750.1 39.462 223 114 4 8 219 267 479 2.40e-41 147
Msa1309850 AT1G07240.1 39.234 209 106 4 13 213 270 465 2.70e-41 147
Msa1309850 AT2G29730.1 38.235 204 106 5 13 212 264 451 7.49e-41 145
Msa1309850 AT4G34135.1 39.665 179 89 2 13 185 278 443 8.38e-41 145
Msa1309850 AT5G14860.1 40.284 211 105 4 15 219 276 471 1.53e-40 145
Msa1309850 AT2G31790.1 37.019 208 114 2 14 220 262 453 2.41e-40 144
Msa1309850 AT2G36760.1 39.906 213 103 4 13 212 277 477 2.80e-40 144
Msa1309850 AT1G10400.1 39.535 215 107 5 15 225 269 464 4.61e-40 143
Msa1309850 AT3G11340.1 37.619 210 116 4 10 219 246 440 4.93e-40 142
Msa1309850 AT1G73880.1 36.744 215 117 4 5 213 255 456 1.01e-39 142
Msa1309850 AT1G05560.1 40.909 198 111 3 17 214 251 442 1.87e-39 141
Msa1309850 AT1G22400.1 36.620 213 117 5 12 223 286 481 1.91e-39 142
Msa1309850 AT1G22360.1 38.208 212 111 6 13 222 283 476 2.28e-39 141
Msa1309850 AT2G16890.2 38.249 217 104 5 15 226 269 460 2.66e-39 141
Msa1309850 AT1G05560.2 40.909 198 111 3 17 214 301 492 2.73e-39 142
Msa1309850 AT1G22380.1 37.441 211 114 4 13 222 286 479 2.78e-39 141
Msa1309850 AT1G22340.1 37.736 212 115 6 12 222 285 480 1.30e-38 139
Msa1309850 AT5G05880.1 36.893 206 115 3 14 219 254 444 2.64e-38 138
Msa1309850 AT3G53150.1 36.522 230 112 5 13 219 287 505 5.25e-38 138
Msa1309850 AT2G43820.1 35.714 210 113 4 4 212 247 435 6.19e-38 137
Msa1309850 AT1G24100.1 36.190 210 112 5 13 219 264 454 7.80e-38 137
Msa1309850 AT3G55700.1 39.024 205 108 6 17 220 259 447 1.05e-37 137
Msa1309850 AT1G78270.1 37.799 209 113 5 15 222 287 479 1.43e-37 137
Msa1309850 AT5G05860.1 39.130 207 111 5 14 220 253 444 1.63e-37 136
Msa1309850 AT3G46680.1 36.715 207 116 4 14 220 255 446 2.43e-37 135
Msa1309850 AT1G22370.1 40.094 212 109 5 12 222 110 304 3.26e-37 132
Msa1309850 AT5G05870.1 36.232 207 117 3 14 220 260 451 9.33e-37 134
Msa1309850 AT4G15480.1 38.462 221 123 5 5 222 267 477 1.24e-36 134
Msa1309850 AT3G46690.1 34.450 209 122 3 12 220 253 446 1.26e-36 134
Msa1309850 AT2G36790.1 39.013 223 115 4 8 219 271 483 1.74e-36 134
Msa1309850 AT1G05530.1 38.384 198 116 3 17 214 254 445 6.36e-36 132
Msa1309850 AT3G55710.1 38.537 205 109 6 17 220 263 451 7.86e-36 132
Msa1309850 AT1G22370.2 40.094 212 109 5 12 222 280 474 8.29e-36 132
Msa1309850 AT5G12890.1 36.788 193 113 3 16 205 275 461 8.59e-36 132
Msa1309850 AT2G43840.2 33.810 210 120 3 14 222 254 445 1.31e-35 131
Msa1309850 AT2G43840.1 33.810 210 120 3 14 222 254 445 1.34e-35 131
Msa1309850 AT4G15550.1 39.604 202 110 5 15 212 269 462 1.34e-35 131
Msa1309850 AT2G36970.1 34.112 214 127 4 14 227 275 474 1.74e-35 131
Msa1309850 AT5G17050.1 35.514 214 118 3 14 227 267 460 1.81e-35 130
Msa1309850 AT3G46700.1 36.232 207 117 3 14 220 250 441 3.80e-35 129
Msa1309850 AT1G22360.2 36.792 212 102 6 13 222 283 464 1.36e-34 128
Msa1309850 AT5G17030.1 35.437 206 113 3 14 219 266 451 2.06e-34 128
Msa1309850 AT5G05900.1 35.922 206 110 3 14 219 260 443 2.10e-34 127
Msa1309850 AT1G06000.1 38.158 228 125 5 1 220 211 430 2.93e-34 127
Msa1309850 AT4G15500.1 37.441 211 115 4 14 222 266 461 3.35e-34 127
Msa1309850 AT5G05890.1 35.437 206 118 3 14 219 258 448 4.73e-34 127
Msa1309850 AT5G59580.1 36.574 216 120 5 14 227 253 453 6.47e-34 126
Msa1309850 AT5G17040.2 35.437 206 113 3 14 219 148 333 7.27e-34 124
Msa1309850 AT3G46660.1 35.981 214 120 5 14 226 261 458 7.85e-34 126
Msa1309850 AT5G65550.1 37.186 199 105 4 1 194 250 433 9.77e-34 126
Msa1309850 AT4G15490.1 35.071 211 120 5 14 222 270 465 1.67e-33 125
Msa1309850 AT5G17040.1 35.437 206 113 3 14 219 250 435 2.03e-33 125
Msa1309850 AT2G16890.3 40.719 167 78 4 15 176 269 419 3.57e-33 124
Msa1309850 AT5G38040.1 36.408 206 115 4 14 219 256 445 4.14e-33 124
Msa1309850 AT3G46650.1 35.545 211 118 4 14 221 238 433 7.20e-33 123
Msa1309850 AT1G30530.1 33.333 216 122 4 4 219 253 446 1.03e-32 123
Msa1309850 AT5G59590.1 34.783 207 120 4 14 220 255 446 1.47e-32 122
Msa1309850 AT3G46720.1 34.783 207 113 3 14 220 253 437 5.06e-32 121
Msa1309850 AT5G49690.1 35.149 202 110 2 2 200 249 432 8.98e-32 120
Msa1309850 AT3G02100.1 35.577 208 106 6 14 220 276 456 9.47e-32 120
Msa1309850 AT3G46670.1 35.211 213 123 4 14 226 254 451 1.02e-31 120
Msa1309850 AT2G23250.1 33.493 209 118 4 14 219 241 431 5.79e-31 118
Msa1309850 AT5G03490.1 34.112 214 118 5 15 226 273 465 7.07e-31 118
Msa1309850 AT3G21560.1 34.597 211 121 4 14 222 276 471 7.99e-31 118
Msa1309850 AT2G23260.1 33.333 204 119 2 14 216 259 446 1.08e-30 117
Msa1309850 AT5G38010.1 34.300 207 118 4 14 219 260 449 5.37e-30 115
Msa1309850 AT1G51210.1 35.751 193 101 4 5 195 261 432 5.82e-30 115
Msa1309850 AT2G26480.1 32.850 207 125 2 14 220 250 442 9.00e-30 115
Msa1309850 AT2G28080.1 33.333 201 117 5 14 214 278 461 1.25e-29 115
Msa1309850 AT4G14090.1 34.500 200 111 5 17 212 261 444 1.29e-29 115
Msa1309850 AT2G22590.1 30.583 206 133 2 4 209 261 456 2.22e-28 111
Msa1309850 AT3G22250.1 35.294 204 103 7 3 202 262 440 4.94e-28 110
Msa1309850 AT4G01070.2 57.609 92 37 1 13 104 257 346 1.62e-26 105
Msa1309850 AT2G30150.1 31.925 213 116 6 6 212 236 425 6.06e-26 104
Msa1309850 AT2G30150.2 31.925 213 116 6 6 212 252 441 8.80e-26 104
Msa1309850 AT2G30140.2 31.280 211 118 6 15 220 259 447 9.63e-25 101
Msa1309850 AT2G30140.1 31.280 211 118 6 15 220 260 448 1.07e-24 101
Msa1309850 AT5G37950.2 40.441 136 68 3 2 137 215 337 7.09e-24 97.8
Msa1309850 AT5G37950.1 40.441 136 68 3 2 137 221 343 8.29e-24 97.8
Msa1309850 AT5G54010.1 33.333 168 101 1 17 184 250 406 2.77e-23 97.4
Msa1309850 AT1G64910.1 31.455 213 129 4 17 227 244 441 4.93e-23 96.7
Msa1309850 AT5G53990.1 31.053 190 118 2 17 204 244 422 1.76e-22 95.1
Msa1309850 AT4G27570.1 32.353 170 104 1 15 184 248 406 5.73e-22 93.6
Msa1309850 AT1G50580.1 28.436 211 138 2 17 225 245 444 1.14e-21 92.8
Msa1309850 AT4G27560.1 32.353 170 104 1 15 184 248 406 1.89e-21 92.4
Msa1309850 AT3G29630.1 29.787 188 118 3 17 201 246 422 3.56e-21 91.7
Msa1309850 AT3G29630.2 29.787 188 118 3 17 201 220 396 3.63e-21 91.3
Msa1309850 AT5G54060.1 29.851 201 127 3 17 214 268 457 5.87e-20 88.2
Msa1309850 AT2G22930.1 28.947 190 122 2 17 204 244 422 7.42e-20 87.8
Msa1309850 AT4G09500.1 30.000 180 113 2 23 200 225 393 8.62e-19 84.7
Msa1309850 AT4G09500.2 30.000 180 113 2 23 200 250 418 1.00e-18 84.3
Msa1309850 AT1G64920.1 29.858 211 127 5 17 219 244 441 3.96e-18 82.8

Find 44 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGAGAACCAAAGAAAA+AGG 0.228222 8_4:-6336392 Msa1309850:CDS
CACCAACTGAACTGTGATTA+AGG 0.244956 8_4:+6336333 None:intergenic
TGAGTAATCACAAATTCTTA+TGG 0.256267 8_4:-6336505 Msa1309850:CDS
AGCACTCAAGTGGAGAAATT+TGG 0.273554 8_4:-6336000 Msa1309850:CDS
GAGTAATCACAAATTCTTAT+GGG 0.334096 8_4:-6336504 Msa1309850:CDS
ACTTGAGCTTGCTTTGGGTT+TGG 0.340738 8_4:-6336531 Msa1309850:CDS
ACAAATACTTGAGCTTGCTT+TGG 0.347885 8_4:-6336537 Msa1309850:CDS
ACTCTTGAGAGTGTTATATA+TGG 0.351533 8_4:-6336281 Msa1309850:CDS
TAGAAATTTCTGAGTTGATC+AGG 0.388212 8_4:-6336139 Msa1309850:CDS
CAAATACTTGAGCTTGCTTT+GGG 0.400573 8_4:-6336536 Msa1309850:CDS
TCAGAATGGCATTGTGGAAA+AGG 0.409619 8_4:-6336162 Msa1309850:CDS
AAATCCGGTGATGATGCTAA+TGG 0.411316 8_4:-6336647 Msa1309850:CDS
ATCCAAATGCCAACAAAATC+CGG 0.435583 8_4:-6336662 None:intergenic
TGCTGAAAGGTATGCAGAAT+AGG 0.458619 8_4:+6336457 None:intergenic
TGAGTTGATCAGGTGTCTCA+TGG 0.462647 8_4:-6336129 Msa1309850:CDS
AATAGTGCACATAAAGAAGA+TGG 0.475884 8_4:-6336050 Msa1309850:CDS
ATGCCATTCTGATTAACTCT+TGG 0.484236 8_4:+6336173 None:intergenic
GGTTCTTGAGTCACTGTGGT+TGG 0.494498 8_4:-6336310 Msa1309850:CDS
AAGGGATGGCTGTTCCATCA+TGG 0.513934 8_4:-6336373 Msa1309850:CDS
ATCCTTAATCACAGTTCAGT+TGG 0.514276 8_4:-6336335 Msa1309850:CDS
TATTCTGCATACCTTTCAGC+AGG 0.517114 8_4:-6336455 Msa1309850:CDS
AGGGATGGCTGTTCCATCAT+GGG 0.526340 8_4:-6336372 Msa1309850:CDS
CTTAATCACAGTTCAGTTGG+TGG 0.533400 8_4:-6336332 Msa1309850:CDS
TGAATCTGTGGTGCCCATGA+TGG 0.534757 8_4:+6336359 None:intergenic
AATCCGGTGATGATGCTAAT+GGG 0.539361 8_4:-6336646 Msa1309850:CDS
TTTCTCAATTAGCACTCAAG+TGG 0.547187 8_4:-6336010 Msa1309850:CDS
TTAATCACAGTTCAGTTGGT+GGG 0.552081 8_4:-6336331 Msa1309850:CDS
CAACATCATTTCCTGCTGAA+AGG 0.556793 8_4:+6336444 None:intergenic
GCAGAATAGGCTGAACTGCT+AGG 0.577932 8_4:+6336470 None:intergenic
AGGCCAAGAGTTAATCAGAA+TGG 0.592476 8_4:-6336176 Msa1309850:CDS
AAAAGAGGCCATGTGATTAG+CGG 0.595211 8_4:+6336254 None:intergenic
CAACCCATTAGCATCATCAC+CGG 0.596517 8_4:+6336643 None:intergenic
ATCAGGTGTCTCATGGAAGG+TGG 0.609216 8_4:-6336122 Msa1309850:CDS
GCTGACTGACAGCCTAAAAG+CGG 0.619572 8_4:-6336204 Msa1309850:CDS
AGTTAATCAGAATGGCATTG+TGG 0.622926 8_4:-6336168 Msa1309850:CDS
CTGACTGACAGCCTAAAAGC+GGG 0.625186 8_4:-6336203 Msa1309850:CDS
ATGGTGTGCCGCTAATCACA+TGG 0.633287 8_4:-6336262 Msa1309850:CDS
TTGATCAGGTGTCTCATGGA+AGG 0.633672 8_4:-6336125 Msa1309850:CDS
GTTGAAGTGTCTAACATGGT+TGG 0.634895 8_4:-6336624 Msa1309850:CDS
ACAGCCTAAAAGCGGGACTG+AGG 0.645070 8_4:-6336196 Msa1309850:CDS
TGATTAAGGATTTGAATCTG+TGG 0.653374 8_4:+6336347 None:intergenic
GAAACATACAAAACTGAACA+AGG 0.662072 8_4:+6336590 None:intergenic
ATGGGTTGAAGTGTCTAACA+TGG 0.701424 8_4:-6336628 Msa1309850:CDS
GGTGGGTTCTTGAGTCACTG+TGG 0.702455 8_4:-6336314 Msa1309850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAGTTTTGTATGTTTCTTT+TGG - chr8_4:6336067-6336086 Msa1309850:CDS 25.0%
!!! CAGTTTTGTATGTTTCTTTT+GGG - chr8_4:6336068-6336087 Msa1309850:CDS 25.0%
! TGAGTAATCACAAATTCTTA+TGG - chr8_4:6336146-6336165 Msa1309850:CDS 25.0%
! GAGTAATCACAAATTCTTAT+GGG - chr8_4:6336147-6336166 Msa1309850:CDS 25.0%
GAAACATACAAAACTGAACA+AGG + chr8_4:6336064-6336083 None:intergenic 30.0%
TGATTAAGGATTTGAATCTG+TGG + chr8_4:6336307-6336326 None:intergenic 30.0%
!! ACTCTTGAGAGTGTTATATA+TGG - chr8_4:6336370-6336389 Msa1309850:CDS 30.0%
!! TAGAAATTTCTGAGTTGATC+AGG - chr8_4:6336512-6336531 Msa1309850:CDS 30.0%
AATAGTGCACATAAAGAAGA+TGG - chr8_4:6336601-6336620 Msa1309850:CDS 30.0%
TTGAGAAAAAGTCTTTGTAG+AGG + chr8_4:6336629-6336648 None:intergenic 30.0%
!! TTGTATGTTTCTTTTGGGAG+TGG - chr8_4:6336073-6336092 Msa1309850:CDS 35.0%
! ACAAATACTTGAGCTTGCTT+TGG - chr8_4:6336114-6336133 Msa1309850:CDS 35.0%
! CAAATACTTGAGCTTGCTTT+GGG - chr8_4:6336115-6336134 Msa1309850:CDS 35.0%
!! TTTGGTTCTCTCCAAAAATC+CGG + chr8_4:6336254-6336273 None:intergenic 35.0%
TTGGAGAGAACCAAAGAAAA+AGG - chr8_4:6336259-6336278 Msa1309850:CDS 35.0%
TGGAGAGAACCAAAGAAAAA+GGG - chr8_4:6336260-6336279 Msa1309850:CDS 35.0%
ATCCTTAATCACAGTTCAGT+TGG - chr8_4:6336316-6336335 Msa1309850:CDS 35.0%
TTAATCACAGTTCAGTTGGT+GGG - chr8_4:6336320-6336339 Msa1309850:CDS 35.0%
ATGCCATTCTGATTAACTCT+TGG + chr8_4:6336481-6336500 None:intergenic 35.0%
AGTTAATCAGAATGGCATTG+TGG - chr8_4:6336483-6336502 Msa1309850:CDS 35.0%
TTTCTCAATTAGCACTCAAG+TGG - chr8_4:6336641-6336660 Msa1309850:CDS 35.0%
! AAATCCGGTGATGATGCTAA+TGG - chr8_4:6336004-6336023 Msa1309850:CDS 40.0%
! AATCCGGTGATGATGCTAAT+GGG - chr8_4:6336005-6336024 Msa1309850:CDS 40.0%
! ATGGGTTGAAGTGTCTAACA+TGG - chr8_4:6336023-6336042 Msa1309850:CDS 40.0%
! GTTGAAGTGTCTAACATGGT+TGG - chr8_4:6336027-6336046 Msa1309850:CDS 40.0%
!! TATGTTTCTTTTGGGAGTGG+TGG - chr8_4:6336076-6336095 Msa1309850:CDS 40.0%
! TGCTGAAAGGTATGCAGAAT+AGG + chr8_4:6336197-6336216 None:intergenic 40.0%
TATTCTGCATACCTTTCAGC+AGG - chr8_4:6336196-6336215 Msa1309850:CDS 40.0%
CAACATCATTTCCTGCTGAA+AGG + chr8_4:6336210-6336229 None:intergenic 40.0%
! GTTTTTACCGTCCGGATTTT+TGG - chr8_4:6336240-6336259 Msa1309850:CDS 40.0%
GAGAACCAAAGAAAAAGGGA+TGG - chr8_4:6336264-6336283 Msa1309850:CDS 40.0%
! AACAGCCATCCCTTTTTCTT+TGG + chr8_4:6336272-6336291 None:intergenic 40.0%
CACCAACTGAACTGTGATTA+AGG + chr8_4:6336321-6336340 None:intergenic 40.0%
CTTAATCACAGTTCAGTTGG+TGG - chr8_4:6336319-6336338 Msa1309850:CDS 40.0%
AAAAGAGGCCATGTGATTAG+CGG + chr8_4:6336400-6336419 None:intergenic 40.0%
AGGCCAAGAGTTAATCAGAA+TGG - chr8_4:6336475-6336494 Msa1309850:CDS 40.0%
TCAGAATGGCATTGTGGAAA+AGG - chr8_4:6336489-6336508 Msa1309850:CDS 40.0%
AGCACTCAAGTGGAGAAATT+TGG - chr8_4:6336651-6336670 Msa1309850:CDS 40.0%
! GCATCATCACCGGATTTTGT+TGG + chr8_4:6336001-6336020 None:intergenic 45.0%
CAACCCATTAGCATCATCAC+CGG + chr8_4:6336011-6336030 None:intergenic 45.0%
! ACTTGAGCTTGCTTTGGGTT+TGG - chr8_4:6336120-6336139 Msa1309850:CDS 45.0%
CGGACGGTAAAAACTGCAAA+GGG + chr8_4:6336234-6336253 None:intergenic 45.0%
! CCTTTGCAGTTTTTACCGTC+CGG - chr8_4:6336232-6336251 Msa1309850:CDS 45.0%
GTTCTCTCCAAAAATCCGGA+CGG + chr8_4:6336250-6336269 None:intergenic 45.0%
!! TGAGTTGATCAGGTGTCTCA+TGG - chr8_4:6336522-6336541 Msa1309850:CDS 45.0%
TTGATCAGGTGTCTCATGGA+AGG - chr8_4:6336526-6336545 Msa1309850:CDS 45.0%
GCAGAATAGGCTGAACTGCT+AGG + chr8_4:6336184-6336203 None:intergenic 50.0%
CCGGACGGTAAAAACTGCAA+AGG + chr8_4:6336235-6336254 None:intergenic 50.0%
AAGGGATGGCTGTTCCATCA+TGG - chr8_4:6336278-6336297 Msa1309850:CDS 50.0%
AGGGATGGCTGTTCCATCAT+GGG - chr8_4:6336279-6336298 Msa1309850:CDS 50.0%
TGAATCTGTGGTGCCCATGA+TGG + chr8_4:6336295-6336314 None:intergenic 50.0%
GGTTCTTGAGTCACTGTGGT+TGG - chr8_4:6336341-6336360 Msa1309850:CDS 50.0%
! ATGGTGTGCCGCTAATCACA+TGG - chr8_4:6336389-6336408 Msa1309850:CDS 50.0%
GTTCGCTGCTCAGCAAAAAG+AGG + chr8_4:6336415-6336434 None:intergenic 50.0%
GCTGACTGACAGCCTAAAAG+CGG - chr8_4:6336447-6336466 Msa1309850:CDS 50.0%
CTGACTGACAGCCTAAAAGC+GGG - chr8_4:6336448-6336467 Msa1309850:CDS 50.0%
ATCAGGTGTCTCATGGAAGG+TGG - chr8_4:6336529-6336548 Msa1309850:CDS 50.0%
! GGTGGGTTCTTGAGTCACTG+TGG - chr8_4:6336337-6336356 Msa1309850:CDS 55.0%
ACAGCCTAAAAGCGGGACTG+AGG - chr8_4:6336455-6336474 Msa1309850:CDS 55.0%
!! TTGGCCTCAGTCCCGCTTTT+AGG + chr8_4:6336462-6336481 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 6335995 6336678 6335995 ID=Msa1309850;Name=Msa1309850
chr8_4 mRNA 6335995 6336678 6335995 ID=Msa1309850-mRNA-1;Parent=Msa1309850;Name=Msa1309850-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|227
chr8_4 exon 6335995 6336678 6335995 ID=Msa1309850-mRNA-1:exon:2173;Parent=Msa1309850-mRNA-1
chr8_4 CDS 6335995 6336678 6335995 ID=Msa1309850-mRNA-1:cds;Parent=Msa1309850-mRNA-1
Gene Sequence

>Msa1309850

ATGCCAACAAAATCCGGTGATGATGCTAATGGGTTGAAGTGTCTAACATGGTTGGACAAACAACAACCTTGTTCAGTTTTGTATGTTTCTTTTGGGAGTGGTGGTACACTTTCACAAGAACAAATACTTGAGCTTGCTTTGGGTTTGGAATTGAGTAATCACAAATTCTTATGGGCTTTAAGAGCACCTAGCAGTTCAGCCTATTCTGCATACCTTTCAGCAGGAAATGATGTTGACCCTTTGCAGTTTTTACCGTCCGGATTTTTGGAGAGAACCAAAGAAAAAGGGATGGCTGTTCCATCATGGGCACCACAGATTCAAATCCTTAATCACAGTTCAGTTGGTGGGTTCTTGAGTCACTGTGGTTGGAATTCAACTCTTGAGAGTGTTATATATGGTGTGCCGCTAATCACATGGCCTCTTTTTGCTGAGCAGCGAACAAATGCAGTTTTGCTGACTGACAGCCTAAAAGCGGGACTGAGGCCAAGAGTTAATCAGAATGGCATTGTGGAAAAGGTAGAAATTTCTGAGTTGATCAGGTGTCTCATGGAAGGTGGAGAAGATGAGAAACTGCAACAAAATATGAAAGAATTAAAAGAAGCTGCTAATAGTGCACATAAAGAAGATGGATCCTCTACAAAGACTTTTTCTCAATTAGCACTCAAGTGGAGAAATTTGGTATAG
Protein sequence

>Msa1309850

MPTKSGDDANGLKCLTWLDKQQPCSVLYVSFGSGGTLSQEQILELALGLELSNHKFLWALRAPSSSAYSAYLSAGNDVDPLQFLPSGFLERTKEKGMAVPSWAPQIQILNHSSVGGFLSHCGWNSTLESVIYGVPLITWPLFAEQRTNAVLLTDSLKAGLRPRVNQNGIVEKVEISELIRCLMEGGEDEKLQQNMKELKEAANSAHKEDGSSTKTFSQLALKWRNLV*