AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0278340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278340 MtrunA17_Chr2g0291481 97.432 740 19 0 1 740 1 740 0.0 1468
Msa0278340 MtrunA17_Chr1g0202741 31.755 718 448 15 39 739 9 701 1.21e-108 346
Msa0278340 MtrunA17_Chr1g0202731 31.154 719 451 17 39 739 14 706 1.94e-105 338
Msa0278340 MtrunA17_Chr8g0348521 32.421 731 423 20 39 738 9 699 1.71e-101 327
Msa0278340 MtrunA17_Chr8g0348531 33.431 685 410 17 73 738 57 714 1.82e-101 327
Msa0278340 MtrunA17_Chr4g0058571 30.806 633 402 13 128 740 114 730 2.25e-82 277
Msa0278340 MtrunA17_Chr8g0349071 36.478 318 178 6 257 568 1 300 1.21e-52 184
Msa0278340 MtrunA17_Chr2g0301511 30.455 220 128 6 286 483 541 757 2.65e-22 102
Msa0278340 MtrunA17_Chr1g0192121 26.749 243 148 6 293 509 511 749 5.61e-21 98.6
Msa0278340 MtrunA17_Chr7g0272591 27.477 222 126 7 293 486 524 738 5.66e-21 98.6
Msa0278340 MtrunA17_Chr4g0061441 25.651 269 168 8 289 533 475 735 6.35e-21 98.2
Msa0278340 MtrunA17_Chr8g0387591 28.829 222 126 6 286 482 552 766 1.16e-20 97.4
Msa0278340 MtrunA17_Chr3g0131401 26.697 221 124 5 293 483 541 753 3.46e-20 95.9
Msa0278340 MtrunA17_Chr8g0385411 26.977 215 131 5 293 483 520 732 8.04e-20 94.7
Msa0278340 MtrunA17_Chr3g0131381 27.511 229 127 6 286 483 527 747 1.18e-19 94.4
Msa0278340 MtrunA17_Chr3g0131361 26.457 223 127 7 293 483 522 739 1.05e-17 88.2
Msa0278340 MtrunA17_Chr7g0238371 24.898 245 148 6 293 504 469 710 3.86e-17 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278340 AT5G49740.1 58.275 719 283 6 36 740 32 747 0.0 867
Msa0278340 AT5G49730.1 57.858 719 284 7 36 740 25 738 0.0 860
Msa0278340 AT5G49740.3 57.015 670 271 6 36 691 32 698 0.0 781
Msa0278340 AT5G49740.2 61.057 511 193 3 36 540 32 542 0.0 651
Msa0278340 AT5G49730.2 60.665 511 193 4 36 540 25 533 0.0 648
Msa0278340 AT1G01580.1 33.714 700 410 17 67 739 52 724 7.30e-117 369
Msa0278340 AT1G01580.2 33.714 700 410 17 67 739 130 802 7.70e-116 368
Msa0278340 AT1G01590.1 33.237 689 408 17 48 715 28 685 2.69e-110 351
Msa0278340 AT5G23980.1 31.319 728 436 17 39 739 8 698 5.86e-108 344
Msa0278340 AT5G23990.2 31.818 726 435 18 39 739 8 698 1.06e-107 344
Msa0278340 AT1G23020.7 31.811 679 417 16 48 715 28 671 8.89e-102 328
Msa0278340 AT1G23020.4 31.818 682 416 17 48 715 28 674 1.35e-100 325
Msa0278340 AT1G23020.3 31.818 682 416 17 48 715 28 674 1.35e-100 325
Msa0278340 AT1G23020.1 31.818 682 416 17 48 715 51 697 1.76e-100 325
Msa0278340 AT1G23020.5 31.818 682 416 17 48 715 51 697 1.76e-100 325
Msa0278340 AT1G23020.6 31.625 683 417 17 48 715 28 675 7.05e-100 323
Msa0278340 AT1G23020.2 31.625 683 417 17 48 715 51 698 1.19e-99 323
Msa0278340 AT5G23990.3 33.618 586 341 14 170 739 13 566 2.60e-96 310
Msa0278340 AT5G23990.1 33.564 578 344 13 178 739 103 656 8.99e-95 308
Msa0278340 AT5G50160.1 30.170 706 428 16 76 740 47 728 1.28e-85 286
Msa0278340 AT5G50160.2 31.802 566 334 12 210 740 1 549 8.31e-77 258
Msa0278340 AT1G19230.1 30.631 222 128 5 286 484 536 754 1.46e-25 113
Msa0278340 AT1G19230.2 30.631 222 128 5 286 484 562 780 1.51e-25 113
Msa0278340 AT5G07390.2 28.384 229 130 7 284 483 479 702 5.75e-22 102
Msa0278340 AT5G07390.1 28.384 229 130 7 284 483 511 734 6.70e-22 102
Msa0278340 AT4G25090.1 29.412 221 130 7 284 483 473 688 6.79e-22 101
Msa0278340 AT4G25090.2 27.336 289 164 11 284 533 461 742 7.37e-22 101
Msa0278340 AT1G64060.1 29.817 218 129 6 286 482 558 772 2.20e-21 100
Msa0278340 AT1G09090.2 26.818 220 134 6 289 484 473 689 8.75e-21 98.2
Msa0278340 AT5G47910.1 28.761 226 128 6 293 493 554 771 1.72e-20 97.4
Msa0278340 AT5G51060.1 24.620 329 183 12 265 533 487 810 2.86e-19 93.6
Msa0278340 AT5G60010.1 27.826 230 129 7 293 487 494 721 1.21e-18 91.3
Msa0278340 AT4G11230.1 30.588 170 106 4 323 482 592 759 2.93e-18 90.1
Msa0278340 AT3G45810.1 26.271 236 139 6 285 487 497 730 1.80e-16 84.3
Msa0278340 AT1G09090.1 29.577 142 85 4 289 418 473 611 3.09e-14 77.0

Find 203 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCACATGTTGGAAATTT+TGG 0.012603 2_3:-11341678 Msa0278340:CDS
CTCTAGCTTCATTTCTTTAA+TGG 0.116575 2_3:-11338503 Msa0278340:exon
AATAATATGTGCTTATAATT+TGG 0.131596 2_3:+11338138 None:intergenic
TTTATCAACCTTGATGTTAT+TGG 0.134284 2_3:+11339534 None:intergenic
TCACATTGCTGTTCTTATTA+AGG 0.174893 2_3:-11340755 Msa0278340:CDS
TTTCCATAATCTTCATTATA+TGG 0.178699 2_3:-11343395 Msa0278340:CDS
TTTCCTATGCCTAGTGATTA+TGG 0.198831 2_3:-11339805 Msa0278340:CDS
GAAGACTCACTTCTTGAATT+AGG 0.211364 2_3:+11341456 None:intergenic
CATAATCTTTATTGTGTTCA+TGG 0.219086 2_3:-11341141 Msa0278340:CDS
ATTGCATACCTAATTATTTC+TGG 0.228186 2_3:-11342994 Msa0278340:CDS
GCTGTTCTTATTAAGGTTCT+TGG 0.232326 2_3:-11340748 Msa0278340:CDS
ATCCAGTTGGATTGGTTATA+TGG 0.235123 2_3:-11339672 Msa0278340:CDS
CAAACAATTAAAATATTTCT+TGG 0.237519 2_3:+11340320 None:intergenic
TTGGTACAGGAAACAATTTC+TGG 0.238946 2_3:-11339768 Msa0278340:CDS
CAATAAAGATTATGTATAAT+TGG 0.241871 2_3:+11341150 None:intergenic
ATGTGGGTGACCTCGCTTCC+TGG 0.264483 2_3:-11341212 Msa0278340:CDS
TTGTTGTGTCAGCTACTAAA+TGG 0.270670 2_3:-11343434 Msa0278340:CDS
CAGTCCATTGTAAGATAAAA+AGG 0.273035 2_3:-11338312 Msa0278340:three_prime_UTR
GTAGCTGACACAACAAAATT+AGG 0.287451 2_3:+11343441 None:intergenic
AGCCCATATAATGAAGATTA+TGG 0.296364 2_3:+11343392 None:intergenic
GTGGTATAGTGGTTGGATTT+TGG 0.304110 2_3:-11339594 Msa0278340:CDS
TGAGTCATTTCTTGTAACTA+TGG 0.312971 2_3:-11343541 Msa0278340:exon
GGACTCCGTTCGGGCGGGAT+TGG 0.318769 2_3:-11341656 Msa0278340:CDS
TGGAACCCATGATAATATTA+AGG 0.319857 2_3:+11343656 None:intergenic
TTCAGCAGTGGAACTTCCTT+TGG 0.321244 2_3:-11343309 Msa0278340:CDS
GATCCTCCCCAGAAATAATT+AGG 0.323576 2_3:+11342986 None:intergenic
TGAATCAATGTCAGAGAAAT+GGG 0.324651 2_3:-11338660 Msa0278340:CDS
ATCCTTAAAAGGACTCTATA+AGG 0.325913 2_3:-11338282 Msa0278340:three_prime_UTR
ATCCTTATCAATGGACCATT+TGG 0.329104 2_3:-11342621 Msa0278340:CDS
TTGAATCAATGTCAGAGAAA+TGG 0.333723 2_3:-11338661 Msa0278340:CDS
TTCCATAATCTTCATTATAT+GGG 0.341924 2_3:-11343394 Msa0278340:CDS
GTTTCTTCTAGCCCTTTAGA+TGG 0.344014 2_3:-11340784 Msa0278340:CDS
GTTGATAAAATTGAGCAAAA+TGG 0.345926 2_3:-11339520 Msa0278340:CDS
AAACAAGTTTATAAGGGTTA+TGG 0.350301 2_3:+11338181 None:intergenic
CTTGTAGTCTGCATGGTTGC+AGG 0.353731 2_3:-11339631 Msa0278340:CDS
TCCTTATCAATGGACCATTT+GGG 0.354970 2_3:-11342620 Msa0278340:CDS
CATTTACTGTCCTTCTTGAT+TGG 0.357857 2_3:+11341036 None:intergenic
TGCATGGATTGTTCACAAAA+TGG 0.360348 2_3:-11343338 Msa0278340:CDS
TACCACCTGCCACTAATATA+AGG 0.362052 2_3:+11340414 None:intergenic
GGCTCTAGGCCAGACTTTAA+AGG 0.367135 2_3:-11339436 Msa0278340:intron
TTATTAGAATGGAAAGATAT+TGG 0.372165 2_3:-11341281 Msa0278340:CDS
CTATATGTTCCCTTCGTTGA+AGG 0.376889 2_3:-11338055 Msa0278340:three_prime_UTR
TTATTAAGGTTCTTGGCAAA+TGG 0.379591 2_3:-11340741 Msa0278340:CDS
CCCCTTTGCAGTTATTAGAA+TGG 0.380554 2_3:-11341292 Msa0278340:intron
CTATGTTATTGAGTGGCTAA+TGG 0.381925 2_3:-11341486 Msa0278340:CDS
AAGGTACTATAATCCTTAAA+AGG 0.385912 2_3:-11338293 Msa0278340:three_prime_UTR
CAAAGCTATGACTGTGGAAA+TGG 0.386950 2_3:+11338528 None:intergenic
TCCTTGTGGTACTGTGGAAA+TGG 0.388446 2_3:-11340994 Msa0278340:CDS
ATATTAGTGGCAGGTGGTAT+TGG 0.391857 2_3:-11340410 Msa0278340:CDS
CTTGAAGGAAAATGAAGCTT+AGG 0.393980 2_3:+11340845 None:intergenic
GCCACTTACATCAAGTGATA+TGG 0.399229 2_3:+11340607 None:intergenic
GCTGATAACTCCTGCTAGAT+TGG 0.399708 2_3:+11341253 None:intergenic
CAAGTGTTGCACAAGAAATC+AGG 0.401849 2_3:-11338589 Msa0278340:CDS
CAGCTACTAAATGGACTCTT+AGG 0.404900 2_3:-11343425 Msa0278340:CDS
TTGCATACCTAATTATTTCT+GGG 0.411386 2_3:-11342993 Msa0278340:CDS
CTATATAAATCCAGTTGGAT+TGG 0.422614 2_3:-11339680 Msa0278340:CDS
AGTCCTTTGCTTTCTAAGAA+AGG 0.424385 2_3:-11343498 Msa0278340:CDS
TATGTCATTTCATCTACCTT+AGG 0.424790 2_3:-11339736 Msa0278340:CDS
CACCATATAACCAATCCAAC+TGG 0.430042 2_3:+11339670 None:intergenic
AGGTTCTTGGCAAATGGACC+GGG 0.430067 2_3:-11340735 Msa0278340:CDS
TAATGATAATATTCACATAA+AGG 0.431733 2_3:+11338231 None:intergenic
AGAAATGCAATTGCAAGAAC+AGG 0.433105 2_3:+11343021 None:intergenic
AAGGTTCTTGGCAAATGGAC+CGG 0.434194 2_3:-11340736 Msa0278340:CDS
AAAGTCCATAGGCGAAATCT+TGG 0.434354 2_3:+11342648 None:intergenic
GTACGAAAACCTTATATTAG+TGG 0.439883 2_3:-11340423 Msa0278340:CDS
TTTCTATGCTTATACTATGC+AGG 0.442358 2_3:-11342538 Msa0278340:CDS
TGATTATGGAATGTCTGGTT+TGG 0.443470 2_3:-11339791 Msa0278340:CDS
GCTTCGGTTGAGGGGCCATA+TGG 0.449802 2_3:-11340640 Msa0278340:CDS
GAAAGTATACCTTTAAAGTC+TGG 0.452123 2_3:+11339427 None:intergenic
CCTAGTGATTATGGAATGTC+TGG 0.452709 2_3:-11339796 Msa0278340:CDS
CCCCAAATGGTCCATTGATA+AGG 0.454422 2_3:+11342619 None:intergenic
AAATTCCACGTTCGCACTCC+AGG 0.454972 2_3:+11341194 None:intergenic
ATGCTGCAAAATATCATGTA+TGG 0.457558 2_3:-11341553 Msa0278340:CDS
GTGGTAACAGCTTCGGTTGA+GGG 0.460759 2_3:-11340649 Msa0278340:CDS
AGAACAGATCCCCTTGAAAT+CGG 0.461594 2_3:+11341605 None:intergenic
TTGTAGCTGGTTTGTTGATG+TGG 0.462418 2_3:-11341229 Msa0278340:CDS
GTTTCTGCAACAGAGCTCAT+TGG 0.463709 2_3:-11342594 Msa0278340:CDS
ATCTTCGGTGGTATAGTGGT+TGG 0.467954 2_3:-11339601 Msa0278340:CDS
TAGGCGAAATCTTGGATACT+TGG 0.468997 2_3:+11342656 None:intergenic
ACAGGAAACAATTTCTGGTC+TGG 0.469821 2_3:-11339763 Msa0278340:CDS
AAGTTAACTACCATACAGTA+TGG 0.471321 2_3:-11339457 Msa0278340:CDS
TTCTCCATCGTGTGAGGGAT+GGG 0.474532 2_3:-11340355 Msa0278340:CDS
ACGATAATTCCCGAACTTGA+AGG 0.476050 2_3:+11340830 None:intergenic
AGTATCCAAGATTTCGCCTA+TGG 0.476533 2_3:-11342653 Msa0278340:CDS
CACATTAAATTTCATTTCAG+TGG 0.478013 2_3:-11343720 Msa0278340:five_prime_UTR
GTTGCAGGTGTAGTTATCTT+CGG 0.483407 2_3:-11339616 Msa0278340:CDS
TGTAGCTGGTTTGTTGATGT+GGG 0.488112 2_3:-11341228 Msa0278340:CDS
CGGGATTGGATTAATGTGCT+TGG 0.488988 2_3:-11341642 Msa0278340:CDS
CGCTTCCTGGAGTGCGAACG+TGG 0.494322 2_3:-11341199 Msa0278340:CDS
GGAACTTCCTTTGGAATCAC+AGG 0.496264 2_3:-11343300 Msa0278340:intron
GTGTTCATGGCTTTGCATAT+TGG 0.498872 2_3:-11341128 Msa0278340:CDS
TGGTTATATGGTGGTACAAA+GGG 0.499086 2_3:-11339660 Msa0278340:CDS
GGAGTTATCAGCCTTGTAGC+TGG 0.499164 2_3:-11341242 Msa0278340:CDS
TATGGAATGTCTGGTTTGGT+TGG 0.500105 2_3:-11339787 Msa0278340:CDS
AAATGGAAGATGGGGTGATA+AGG 0.501290 2_3:+11338545 None:intergenic
AAACACGTAAATATAGTAAG+TGG 0.502199 2_3:+11343608 None:intergenic
GGAAAAGCAAAGTTCTCTAA+AGG 0.503179 2_3:-11339563 Msa0278340:CDS
GAAGCTGTTACCACCGTATG+AGG 0.505127 2_3:+11340658 None:intergenic
ATTGGTGTTGCCAATCTAGC+AGG 0.509235 2_3:-11341263 Msa0278340:CDS
AGTTATCTTCGGTGGTATAG+TGG 0.510123 2_3:-11339605 Msa0278340:CDS
TATGGTACTTCGTGTCCATA+TGG 0.512922 2_3:+11340625 None:intergenic
AAGTAAGATCACAAAGCCTA+AGG 0.519858 2_3:+11339720 None:intergenic
GGTGGTAACAGCTTCGGTTG+AGG 0.520485 2_3:-11340650 Msa0278340:CDS
CACTGAAATGAAATTTAATG+TGG 0.520500 2_3:+11343721 None:intergenic
ATGTCTGGTTTGGTTGGTAC+AGG 0.521130 2_3:-11339781 Msa0278340:CDS
TTGAAGGAAAATGAAGCTTA+GGG 0.521409 2_3:+11340846 None:intergenic
GCAAAATATCATGTATGGCT+AGG 0.522260 2_3:-11341548 Msa0278340:CDS
TGAGGTTCTGCCAATCAAGA+AGG 0.523056 2_3:-11341046 Msa0278340:CDS
TATATTGTATATATAGTAGC+AGG 0.523200 2_3:-11338437 Msa0278340:three_prime_UTR
TCATACGGTGGTAACAGCTT+CGG 0.525366 2_3:-11340656 Msa0278340:CDS
AATATGATTACCTTCAACGA+AGG 0.530107 2_3:+11338045 None:intergenic
TTTATTTATACCGATTTCAA+GGG 0.530400 2_3:-11341615 Msa0278340:CDS
ATTTACTATATAAATCCAGT+TGG 0.531760 2_3:-11339685 Msa0278340:CDS
ATTCTCCATCGTGTGAGGGA+TGG 0.535286 2_3:-11340356 Msa0278340:CDS
TGGCCTAGAGCCATACTGTA+TGG 0.535994 2_3:+11339447 None:intergenic
GTTGCAGAAACAACCCCAAA+TGG 0.541339 2_3:+11342606 None:intergenic
TTTATCTGTTCAGCCTCATA+CGG 0.542802 2_3:-11340671 Msa0278340:CDS
ACTTCTTTCGACCGTTGACA+TGG 0.543973 2_3:-11340270 Msa0278340:CDS
TCACCTTTCTTAGAAAGCAA+AGG 0.544082 2_3:+11343495 None:intergenic
GACTCTTCTATGTTATTGAG+TGG 0.545334 2_3:-11341493 Msa0278340:CDS
GCAACACTTGACTGAAGAGT+TGG 0.545843 2_3:+11338602 None:intergenic
ATGACTGTGGAAATGGAAGA+TGG 0.548444 2_3:+11338535 None:intergenic
CTACCATACAGTATGGCTCT+AGG 0.555352 2_3:-11339450 Msa0278340:CDS
TGCATACCTAATTATTTCTG+GGG 0.557842 2_3:-11342992 Msa0278340:CDS
GATGTTGGTATTCTAGTTTG+TGG 0.558214 2_3:-11338629 Msa0278340:CDS
AGAAATAATTAGGTATGCAA+TGG 0.558493 2_3:+11342996 None:intergenic
ACACTTGACTGAAGAGTTGG+AGG 0.558505 2_3:+11338605 None:intergenic
TTGGTTATATGGTGGTACAA+AGG 0.558838 2_3:-11339661 Msa0278340:CDS
GGGCTAGAAGAAACACTGAA+TGG 0.559675 2_3:+11340793 None:intergenic
GAAAACCTTATATTAGTGGC+AGG 0.559997 2_3:-11340419 Msa0278340:CDS
ATACCTAATTATTTCTGGGG+AGG 0.562304 2_3:-11342989 Msa0278340:CDS
TAAATATAGTAAGTGGGAGA+AGG 0.563544 2_3:+11343615 None:intergenic
GGGAATTATCGTGGCTTCAG+TGG 0.567364 2_3:-11340819 Msa0278340:CDS
TGTTATTATCTGCAGGAAGA+GGG 0.567707 2_3:-11339862 Msa0278340:intron
CCAGACATTCCATAATCACT+AGG 0.567995 2_3:+11339796 None:intergenic
TTCAAGTTCGGGAATTATCG+TGG 0.568443 2_3:-11340828 Msa0278340:CDS
ATCTGTTCAGCCTCATACGG+TGG 0.568522 2_3:-11340668 Msa0278340:CDS
CAATAACATAGAAGAGTCCA+TGG 0.569129 2_3:+11341498 None:intergenic
AAATGGCTTAATTTCAGCAG+TGG 0.569517 2_3:-11343321 Msa0278340:CDS
TTAATCCAATCCCGCCCGAA+CGG 0.573743 2_3:+11341651 None:intergenic
AAAATATTTCTTGGTCGACA+AGG 0.574465 2_3:+11340329 None:intergenic
ACATCAACAAACCAGCTACA+AGG 0.574690 2_3:+11341231 None:intergenic
ATGTCAACGGTCGAAAGAAG+TGG 0.576179 2_3:+11340272 None:intergenic
TGTACATATCTTCGTCACTC+GGG 0.579762 2_3:-11340207 Msa0278340:CDS
TAATCACTAGGCATAGGAAA+GGG 0.580384 2_3:+11339808 None:intergenic
TTATGCTTGATCGATTTCTG+AGG 0.584264 2_3:-11341064 Msa0278340:CDS
TGACTGTGGAAATGGAAGAT+GGG 0.586819 2_3:+11338536 None:intergenic
GGATAAGTCCAATAACATCA+AGG 0.590579 2_3:-11339542 Msa0278340:CDS
TGGTAACAGCTTCGGTTGAG+GGG 0.591607 2_3:-11340648 Msa0278340:CDS
CCTTATCAATGGACCATTTG+GGG 0.593226 2_3:-11342619 Msa0278340:CDS
TCGGGAATCAGATCCTCCAT+TGG 0.593505 2_3:-11340189 Msa0278340:intron
AATGGTCCATTGATAAGGAT+CGG 0.593738 2_3:+11342624 None:intergenic
CTCTATAAGGAACTCTGAGT+GGG 0.593858 2_3:-11338269 Msa0278340:three_prime_UTR
ATGTACATATCTTCGTCACT+CGG 0.595377 2_3:-11340208 Msa0278340:CDS
AAATGGCTCTGTGGATCACA+AGG 0.597424 2_3:-11339503 Msa0278340:CDS
ACAGATTGTTTCCATGTCAA+CGG 0.597655 2_3:+11340259 None:intergenic
ATTCCATAATCACTAGGCAT+AGG 0.598212 2_3:+11339802 None:intergenic
ACTGAAATGAAATTTAATGT+GGG 0.600368 2_3:+11343722 None:intergenic
CGATATTCTCCATCGTGTGA+GGG 0.600683 2_3:-11340360 Msa0278340:CDS
TCGCTCAATATAGCAAGGAA+AGG 0.600792 2_3:+11340380 None:intergenic
GTTATTGAGTGGCTAATGGA+AGG 0.601090 2_3:-11341482 Msa0278340:CDS
GCGATATTCTCCATCGTGTG+AGG 0.601408 2_3:-11340361 Msa0278340:CDS
ATAATCACTAGGCATAGGAA+AGG 0.604094 2_3:+11339807 None:intergenic
ATGTGGGGATAATATAGTAG+AGG 0.604376 2_3:+11343738 None:intergenic
AACACGTAAATATAGTAAGT+GGG 0.604909 2_3:+11343609 None:intergenic
ATATGATTACCTTCAACGAA+GGG 0.606366 2_3:+11338046 None:intergenic
GGTTCTTGGCAAATGGACCG+GGG 0.607531 2_3:-11340734 Msa0278340:CDS
GTGCCTTCCTTGTGGTACTG+TGG 0.609460 2_3:-11341000 Msa0278340:CDS
GAAGACATACCTTCAACCAA+TGG 0.610433 2_3:-11338473 Msa0278340:three_prime_UTR
GCTACTACTTGTAGTCTGCA+TGG 0.612275 2_3:-11339638 Msa0278340:CDS
AAGAAAGGTGATGAAACTGA+TGG 0.618638 2_3:-11343483 Msa0278340:CDS
CGTTCGCACTCCAGGAAGCG+AGG 0.620245 2_3:+11341202 None:intergenic
CAGTTGGATTGGTTATATGG+TGG 0.622983 2_3:-11339669 Msa0278340:CDS
GAATATCGCTCAATATAGCA+AGG 0.623134 2_3:+11340375 None:intergenic
GACTGTGGAAATGGAAGATG+GGG 0.624675 2_3:+11338537 None:intergenic
CGAAAGGGATATCTATGAAG+CGG 0.625285 2_3:+11341579 None:intergenic
TGTATTACCTGTGATTCCAA+AGG 0.625397 2_3:+11343293 None:intergenic
TGTGGGGATAATATAGTAGA+GGG 0.626067 2_3:+11343739 None:intergenic
CTGAAATGAAATTTAATGTG+GGG 0.626071 2_3:+11343723 None:intergenic
TTATTTATACCGATTTCAAG+GGG 0.626114 2_3:-11341614 Msa0278340:CDS
AGAGATCAAAGCTATGACTG+TGG 0.626232 2_3:+11338522 None:intergenic
TTACCATCAGAATCTGTGCA+TGG 0.626896 2_3:-11343354 Msa0278340:CDS
TCATCGAGGTGCCTTCCTTG+TGG 0.629616 2_3:-11341008 Msa0278340:CDS
GCAGGTGTAGTTATCTTCGG+TGG 0.630037 2_3:-11339613 Msa0278340:CDS
ACTCTATAAGGAACTCTGAG+TGG 0.632677 2_3:-11338270 Msa0278340:three_prime_UTR
AATCCATGCACAGATTCTGA+TGG 0.634212 2_3:+11343351 None:intergenic
AAAGTTAGACTAACCAATGG+AGG 0.635530 2_3:+11340176 None:intergenic
TTTCCACAGTACCACAAGGA+AGG 0.637164 2_3:+11340997 None:intergenic
TAAGGATCGGAAAAGTCCAT+AGG 0.639419 2_3:+11342637 None:intergenic
GTTCTTGGCAAATGGACCGG+GGG 0.642988 2_3:-11340733 Msa0278340:CDS
AGTTATCATTTAGAGCCAAG+AGG 0.648631 2_3:-11342494 Msa0278340:intron
TTTACTTTATCAGAAAAGCG+TGG 0.652331 2_3:+11340236 None:intergenic
AACCTTATATTAGTGGCAGG+TGG 0.653585 2_3:-11340416 Msa0278340:CDS
AAATGGGGCCATGTTGATGT+TGG 0.654368 2_3:-11338644 Msa0278340:CDS
TTAAGAGAAAGAATCACTGA+AGG 0.655743 2_3:-11340709 Msa0278340:CDS
AATTGAGCAAAATGGCTCTG+TGG 0.663882 2_3:-11339512 Msa0278340:CDS
GAATCAATGTCAGAGAAATG+GGG 0.666449 2_3:-11338659 Msa0278340:CDS
GTTTCCCATCCCTCACACGA+TGG 0.667021 2_3:+11340351 None:intergenic
CTAGAATACCAACATCAACA+TGG 0.673063 2_3:+11338636 None:intergenic
ACCATTTCCACAGTACCACA+AGG 0.680934 2_3:+11340993 None:intergenic
TTCTTGGCAAATGGACCGGG+GGG 0.692411 2_3:-11340732 Msa0278340:CDS
ATGGCTAGGACACCTCACAA+TGG 0.732994 2_3:-11341534 Msa0278340:CDS
CAGTAAATGTAATCTCATCG+AGG 0.756992 2_3:-11341022 Msa0278340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTTATTAGTTTATTT+GGG + chr2_3:11339429-11339448 None:intergenic 10.0%
!!! AAGAAATATTTTAATTGTTT+GGG - chr2_3:11341438-11341457 Msa0278340:intron 10.0%
!!! AAAAAATGTCATATTTTTAT+CGG - chr2_3:11342720-11342739 Msa0278340:intron 10.0%
!! AATATTAAGGTAAAAATATG+AGG + chr2_3:11338090-11338109 None:intergenic 15.0%
!!! TTTTTACCTTAATATTATCA+TGG - chr2_3:11338094-11338113 Msa0278340:three_prime_UTR 15.0%
!!! TTTTACCTTAATATTATCAT+GGG - chr2_3:11338095-11338114 Msa0278340:three_prime_UTR 15.0%
!!! AATTTCTGAAAATAAAGAAA+TGG + chr2_3:11339303-11339322 None:intergenic 15.0%
!!! GTTTCTTTTATTAGTTTATT+TGG + chr2_3:11339430-11339449 None:intergenic 15.0%
!!! CTTTTTAATTTTTCAGTTTA+TGG + chr2_3:11339595-11339614 None:intergenic 15.0%
!! TCTTTAATAAAAACAAACTA+GGG + chr2_3:11339735-11339754 None:intergenic 15.0%
!! AAAGTTAAAACTCTTAAAAT+GGG + chr2_3:11339850-11339869 None:intergenic 15.0%
!! AAAAGTTAAAACTCTTAAAA+TGG + chr2_3:11339851-11339870 None:intergenic 15.0%
!! ATTATGTAAAGATAAGTAAA+TGG + chr2_3:11340438-11340457 None:intergenic 15.0%
!! TTACTTATCTTTACATAATT+TGG - chr2_3:11340439-11340458 Msa0278340:intron 15.0%
!! CAATAAAGATTATGTATAAT+TGG + chr2_3:11340609-11340628 None:intergenic 15.0%
!! CAAACAATTAAAATATTTCT+TGG + chr2_3:11341439-11341458 None:intergenic 15.0%
!!! CAAGAAATATTTTAATTGTT+TGG - chr2_3:11341437-11341456 Msa0278340:intron 15.0%
!! TAATGATAATATTCACATAA+AGG + chr2_3:11343528-11343547 None:intergenic 15.0%
!! AAAGAAAAACAAGTTTATAA+GGG + chr2_3:11343584-11343603 None:intergenic 15.0%
!! TAAAGAAAAACAAGTTTATA+AGG + chr2_3:11343585-11343604 None:intergenic 15.0%
!! AATAATATGTGCTTATAATT+TGG + chr2_3:11343621-11343640 None:intergenic 15.0%
!! ACTGAAATGAAATTTAATGT+GGG + chr2_3:11338037-11338056 None:intergenic 20.0%
!! TTTCCATAATCTTCATTATA+TGG - chr2_3:11338361-11338380 Msa0278340:three_prime_UTR 20.0%
!! TTCCATAATCTTCATTATAT+GGG - chr2_3:11338362-11338381 Msa0278340:three_prime_UTR 20.0%
!!! GAAATTAATTCGAGTTTAAT+TGG + chr2_3:11339017-11339036 None:intergenic 20.0%
!!! TTTTGATATTGTTTTTGACA+TGG - chr2_3:11339053-11339072 Msa0278340:intron 20.0%
!!! TTTTTTTGGCATATGTTATT+TGG - chr2_3:11339193-11339212 Msa0278340:intron 20.0%
!!! TTTTTTGGCATATGTTATTT+GGG - chr2_3:11339194-11339213 Msa0278340:intron 20.0%
!!! ATGCAAATTACTTTGTTTAA+TGG - chr2_3:11339332-11339351 Msa0278340:intron 20.0%
!! TAAAGAAAAAAATTCATGCA+TGG + chr2_3:11339358-11339377 None:intergenic 20.0%
!! ATTCCAATATGAATTGAAAT+TGG - chr2_3:11339495-11339514 Msa0278340:CDS 20.0%
!! CTCTTTAATAAAAACAAACT+AGG + chr2_3:11339736-11339755 None:intergenic 20.0%
!! AAGTTAAAACTCTTAAAATG+GGG + chr2_3:11339849-11339868 None:intergenic 20.0%
!!! AAAAATCAATTTGAAGCAAA+AGG + chr2_3:11339911-11339930 None:intergenic 20.0%
!! ATATGATAAGTTAATTTACC+TGG - chr2_3:11340035-11340054 Msa0278340:intron 20.0%
!!! TTTTATTTATACCGATTTCA+AGG - chr2_3:11340140-11340159 Msa0278340:intron 20.0%
!!! TTTATTTATACCGATTTCAA+GGG - chr2_3:11340141-11340160 Msa0278340:intron 20.0%
!! TTATTAGAATGGAAAGATAT+TGG - chr2_3:11340475-11340494 Msa0278340:intron 20.0%
!! TCAAGCATAAAAAGAAATAT+TGG + chr2_3:11340682-11340701 None:intergenic 20.0%
!! ATTTACTATATAAATCCAGT+TGG - chr2_3:11342071-11342090 Msa0278340:intron 20.0%
!! TCTTAATATCAATACATGAA+AGG - chr2_3:11342376-11342395 Msa0278340:intron 20.0%
!! ATGATTCATAAGAATGAATT+GGG + chr2_3:11342548-11342567 None:intergenic 20.0%
!! AATGATTCATAAGAATGAAT+TGG + chr2_3:11342549-11342568 None:intergenic 20.0%
!!! ATAGTAAGATACTTTTTTTG+TGG - chr2_3:11342610-11342629 Msa0278340:CDS 20.0%
!! TATATTGTATATATAGTAGC+AGG - chr2_3:11343319-11343338 Msa0278340:CDS 20.0%
!!! AATATTTTGCACTTGTAATA+TGG - chr2_3:11343381-11343400 Msa0278340:CDS 20.0%
! CTGAAATGAAATTTAATGTG+GGG + chr2_3:11338036-11338055 None:intergenic 25.0%
! CACTGAAATGAAATTTAATG+TGG + chr2_3:11338038-11338057 None:intergenic 25.0%
! CACATTAAATTTCATTTCAG+TGG - chr2_3:11338036-11338055 Msa0278340:three_prime_UTR 25.0%
! TGAGGATCATAAAAAATGTT+GGG + chr2_3:11338072-11338091 None:intergenic 25.0%
! ATGAGGATCATAAAAAATGT+TGG + chr2_3:11338073-11338092 None:intergenic 25.0%
! AACACGTAAATATAGTAAGT+GGG + chr2_3:11338150-11338169 None:intergenic 25.0%
! AAACACGTAAATATAGTAAG+TGG + chr2_3:11338151-11338170 None:intergenic 25.0%
!!! TGATTTCTTGCTTTTTGTTT+TGG - chr2_3:11338504-11338523 Msa0278340:exon 25.0%
!!! AATCTTGTTTTTTCACTATG+TGG - chr2_3:11338649-11338668 Msa0278340:CDS 25.0%
! AGAAATAATTAGGTATGCAA+TGG + chr2_3:11338763-11338782 None:intergenic 25.0%
! ATTGCATACCTAATTATTTC+TGG - chr2_3:11338762-11338781 Msa0278340:intron 25.0%
!! TTGCATACCTAATTATTTCT+GGG - chr2_3:11338763-11338782 Msa0278340:intron 25.0%
! ATTAATCCAATGTACAGATA+CGG + chr2_3:11338828-11338847 None:intergenic 25.0%
! ACATACTAATGAAACATGAT+TGG + chr2_3:11338886-11338905 None:intergenic 25.0%
! TAGTTCCTAAAATATCTCTT+CGG - chr2_3:11338919-11338938 Msa0278340:intron 25.0%
!!! CATTGGAATTGTCATTTTTT+TGG - chr2_3:11339179-11339198 Msa0278340:intron 25.0%
!!! TAATTTTTCAGTTTATGGAG+AGG + chr2_3:11339590-11339609 None:intergenic 25.0%
! AGAAAAATATTTGCAAACTC+TGG + chr2_3:11339688-11339707 None:intergenic 25.0%
! TTAAAACAAGAATCTTGACA+TGG - chr2_3:11339869-11339888 Msa0278340:intron 25.0%
! AAATTACATGATCATTGCAA+AGG + chr2_3:11340002-11340021 None:intergenic 25.0%
! GAAAAAAAGTTAAGTAAACC+AGG + chr2_3:11340056-11340075 None:intergenic 25.0%
!!! TTATTTATACCGATTTCAAG+GGG - chr2_3:11340142-11340161 Msa0278340:intron 25.0%
! CATAATCTTTATTGTGTTCA+TGG - chr2_3:11340615-11340634 Msa0278340:intron 25.0%
! AAATAAGTACACTTACTTTG+TGG + chr2_3:11340799-11340818 None:intergenic 25.0%
! TATATTGTCACTGTTACATA+TGG + chr2_3:11340859-11340878 None:intergenic 25.0%
!!! TGTGATTTTTTCCATCTAAA+GGG + chr2_3:11340986-11341005 None:intergenic 25.0%
!!! ATGTGATTTTTTCCATCTAA+AGG + chr2_3:11340987-11341006 None:intergenic 25.0%
!! AGTTAGCTTAAAATCTACTT+TGG + chr2_3:11341246-11341265 None:intergenic 25.0%
!! TGTGTTCATTTTGTTCTATT+AGG - chr2_3:11341311-11341330 Msa0278340:intron 25.0%
! CCTTTCTATTATTCAAAGTT+AGG + chr2_3:11341728-11341747 None:intergenic 25.0%
! CCTAACTTTGAATAATAGAA+AGG - chr2_3:11341725-11341744 Msa0278340:intron 25.0%
!!! CTTTTGAATGTTTAAAACCA+CGG - chr2_3:11341843-11341862 Msa0278340:intron 25.0%
!! ATTTGATTGTTATTATCTGC+AGG - chr2_3:11341887-11341906 Msa0278340:intron 25.0%
! TTTATCAACCTTGATGTTAT+TGG + chr2_3:11342225-11342244 None:intergenic 25.0%
!! GTTGATAAAATTGAGCAAAA+TGG - chr2_3:11342236-11342255 Msa0278340:intron 25.0%
!! TTGTGAATCGAATTTTACTA+TGG + chr2_3:11342762-11342781 None:intergenic 25.0%
! GTAAAATTCGATTCACAATT+TGG - chr2_3:11342764-11342783 Msa0278340:intron 25.0%
!! AGTACCTTTTTATCTTACAA+TGG + chr2_3:11343451-11343470 None:intergenic 25.0%
!! AAGGTACTATAATCCTTAAA+AGG - chr2_3:11343463-11343482 Msa0278340:CDS 25.0%
! AAACAAGTTTATAAGGGTTA+TGG + chr2_3:11343578-11343597 None:intergenic 25.0%
TGGAACCCATGATAATATTA+AGG + chr2_3:11338103-11338122 None:intergenic 30.0%
GGAAAAAGATGAAAACATTG+TGG + chr2_3:11338123-11338142 None:intergenic 30.0%
TAAATATAGTAAGTGGGAGA+AGG + chr2_3:11338144-11338163 None:intergenic 30.0%
TGAGTCATTTCTTGTAACTA+TGG - chr2_3:11338215-11338234 Msa0278340:three_prime_UTR 30.0%
AGCCCATATAATGAAGATTA+TGG + chr2_3:11338367-11338386 None:intergenic 30.0%
!!! CTTGCTTTTTGTTTTGGTTT+TGG - chr2_3:11338510-11338529 Msa0278340:exon 30.0%
!! TGCATACCTAATTATTTCTG+GGG - chr2_3:11338764-11338783 Msa0278340:intron 30.0%
TATGTAGAAATCACATACTC+AGG + chr2_3:11338801-11338820 None:intergenic 30.0%
TGATTGGATATTTACACTGA+CGG + chr2_3:11338870-11338889 None:intergenic 30.0%
! GATATCCGAAGAGATATTTT+AGG + chr2_3:11338927-11338946 None:intergenic 30.0%
! GTTTTTGACATGGATTTTGA+TGG - chr2_3:11339063-11339082 Msa0278340:intron 30.0%
TTTCTATGCTTATACTATGC+AGG - chr2_3:11339218-11339237 Msa0278340:intron 30.0%
TAGTGAGATTAAGATAACAC+TGG - chr2_3:11339463-11339482 Msa0278340:CDS 30.0%
CCTCCAATTTCAATTCATAT+TGG + chr2_3:11339501-11339520 None:intergenic 30.0%
CCAATATGAATTGAAATTGG+AGG - chr2_3:11339498-11339517 Msa0278340:CDS 30.0%
GCATAGAAGTCTCAAAATTT+GGG + chr2_3:11339631-11339650 None:intergenic 30.0%
AGCATAGAAGTCTCAAAATT+TGG + chr2_3:11339632-11339651 None:intergenic 30.0%
TTTATTAAAGAGTCCCACAT+CGG - chr2_3:11339744-11339763 Msa0278340:CDS 30.0%
TCTGAACACGTGTTTATAAA+TGG - chr2_3:11339779-11339798 Msa0278340:CDS 30.0%
CTGAACACGTGTTTATAAAT+GGG - chr2_3:11339780-11339799 Msa0278340:CDS 30.0%
TGAACACGTGTTTATAAATG+GGG - chr2_3:11339781-11339800 Msa0278340:CDS 30.0%
! TTGCACATGTTGGAAATTTT+GGG - chr2_3:11340079-11340098 Msa0278340:intron 30.0%
ATGCTGCAAAATATCATGTA+TGG - chr2_3:11340203-11340222 Msa0278340:CDS 30.0%
TGTTATCCTAAATCCTTCAA+AGG - chr2_3:11340380-11340399 Msa0278340:CDS 30.0%
TAATCAACAACTACCTTTGA+AGG + chr2_3:11340396-11340415 None:intergenic 30.0%
! CAAAGGTAGTTGTTGATTAT+TGG - chr2_3:11340397-11340416 Msa0278340:CDS 30.0%
TCCATTCTAATAACTGCAAA+GGG + chr2_3:11340468-11340487 None:intergenic 30.0%
TTCCATTCTAATAACTGCAA+AGG + chr2_3:11340469-11340488 None:intergenic 30.0%
TTGAAGGAAAATGAAGCTTA+GGG + chr2_3:11340913-11340932 None:intergenic 30.0%
! TCACATTGCTGTTCTTATTA+AGG - chr2_3:11341001-11341020 Msa0278340:CDS 30.0%
TTATTAAGGTTCTTGGCAAA+TGG - chr2_3:11341015-11341034 Msa0278340:CDS 30.0%
TTAAGAGAAAGAATCACTGA+AGG - chr2_3:11341047-11341066 Msa0278340:CDS 30.0%
GTACGAAAACCTTATATTAG+TGG - chr2_3:11341333-11341352 Msa0278340:intron 30.0%
AAAATATTTCTTGGTCGACA+AGG + chr2_3:11341430-11341449 None:intergenic 30.0%
TTTACTTTATCAGAAAAGCG+TGG + chr2_3:11341523-11341542 None:intergenic 30.0%
TAGAAAGTTAGACTAACCAA+TGG + chr2_3:11341586-11341605 None:intergenic 30.0%
!! TTTCTTCGATTTGTGTCTTT+TGG - chr2_3:11341621-11341640 Msa0278340:CDS 30.0%
! TATGTCATTTCATCTACCTT+AGG - chr2_3:11342020-11342039 Msa0278340:intron 30.0%
CTATATAAATCCAGTTGGAT+TGG - chr2_3:11342076-11342095 Msa0278340:intron 30.0%
AAGTTAACTACCATACAGTA+TGG - chr2_3:11342299-11342318 Msa0278340:intron 30.0%
!! GAAAGTATACCTTTAAAGTC+TGG + chr2_3:11342332-11342351 None:intergenic 30.0%
ATCAAATCGATATGAATCTC+TGG - chr2_3:11342466-11342485 Msa0278340:intron 30.0%
! TTTTATCGGTAGTGTATCTT+AGG - chr2_3:11342734-11342753 Msa0278340:intron 30.0%
CGATTCACAATTTGGAAATT+TGG - chr2_3:11342772-11342791 Msa0278340:intron 30.0%
TGTAAAAAAGGGACTAATAC+TGG + chr2_3:11343029-11343048 None:intergenic 30.0%
!!! TTAGTCCCTTTTTTACAATG+TGG - chr2_3:11343032-11343051 Msa0278340:CDS 30.0%
CTCTTCCACATTGTAAAAAA+GGG + chr2_3:11343040-11343059 None:intergenic 30.0%
TTGAATCAATGTCAGAGAAA+TGG - chr2_3:11343095-11343114 Msa0278340:intron 30.0%
TGAATCAATGTCAGAGAAAT+GGG - chr2_3:11343096-11343115 Msa0278340:intron 30.0%
! CTCTAGCTTCATTTCTTTAA+TGG - chr2_3:11343253-11343272 Msa0278340:intron 30.0%
! ATATATGCATGCTTTTCCAT+TGG + chr2_3:11343302-11343321 None:intergenic 30.0%
CAGTCCATTGTAAGATAAAA+AGG - chr2_3:11343444-11343463 Msa0278340:CDS 30.0%
ATCCTTAAAAGGACTCTATA+AGG - chr2_3:11343474-11343493 Msa0278340:CDS 30.0%
! TTCCTTATAGAGTCCTTTTA+AGG + chr2_3:11343479-11343498 None:intergenic 30.0%
ATATGATTACCTTCAACGAA+GGG + chr2_3:11343713-11343732 None:intergenic 30.0%
AATATGATTACCTTCAACGA+AGG + chr2_3:11343714-11343733 None:intergenic 30.0%
TGTGGGGATAATATAGTAGA+GGG + chr2_3:11338020-11338039 None:intergenic 35.0%
ATGTGGGGATAATATAGTAG+AGG + chr2_3:11338021-11338040 None:intergenic 35.0%
! AGTCCTTTGCTTTCTAAGAA+AGG - chr2_3:11338258-11338277 Msa0278340:three_prime_UTR 35.0%
TCACCTTTCTTAGAAAGCAA+AGG + chr2_3:11338264-11338283 None:intergenic 35.0%
AAGAAAGGTGATGAAACTGA+TGG - chr2_3:11338273-11338292 Msa0278340:three_prime_UTR 35.0%
GTAGCTGACACAACAAAATT+AGG + chr2_3:11338318-11338337 None:intergenic 35.0%
TTGTTGTGTCAGCTACTAAA+TGG - chr2_3:11338322-11338341 Msa0278340:three_prime_UTR 35.0%
! TGCATGGATTGTTCACAAAA+TGG - chr2_3:11338418-11338437 Msa0278340:three_prime_UTR 35.0%
AAATGGCTTAATTTCAGCAG+TGG - chr2_3:11338435-11338454 Msa0278340:three_prime_UTR 35.0%
TGTATTACCTGTGATTCCAA+AGG + chr2_3:11338466-11338485 None:intergenic 35.0%
AGAAATGCAATTGCAAGAAC+AGG + chr2_3:11338738-11338757 None:intergenic 35.0%
!! ATACCTAATTATTTCTGGGG+AGG - chr2_3:11338767-11338786 Msa0278340:intron 35.0%
TACTTTCCGTATCTGTACAT+TGG - chr2_3:11338819-11338838 Msa0278340:intron 35.0%
! ACTTTTCCGATCCTTATCAA+TGG - chr2_3:11339126-11339145 Msa0278340:intron 35.0%
AATGGTCCATTGATAAGGAT+CGG + chr2_3:11339135-11339154 None:intergenic 35.0%
ATCCTTATCAATGGACCATT+TGG - chr2_3:11339135-11339154 Msa0278340:intron 35.0%
TCCTTATCAATGGACCATTT+GGG - chr2_3:11339136-11339155 Msa0278340:intron 35.0%
! AGTTATCATTTAGAGCCAAG+AGG - chr2_3:11339262-11339281 Msa0278340:intron 35.0%
TTCTAAACTGTAGTACCTCT+TGG + chr2_3:11339280-11339299 None:intergenic 35.0%
TTGACAGTGCTTATTAACCA+CGG - chr2_3:11339556-11339575 Msa0278340:CDS 35.0%
!!! ATTTTGAGACTTCTATGCTG+AGG - chr2_3:11339633-11339652 Msa0278340:CDS 35.0%
!!! TGGTTTTGTAAGGATGAGTT+AGG - chr2_3:11339823-11339842 Msa0278340:CDS 35.0%
GTCGGTAATACTTAAGACAA+AGG + chr2_3:11339935-11339954 None:intergenic 35.0%
TCCATGCTAATGACTATTGT+CGG + chr2_3:11339953-11339972 None:intergenic 35.0%
!!! TTTTTTCAGCTTGCACATGT+TGG - chr2_3:11340069-11340088 Msa0278340:intron 35.0%
! CTTGCACATGTTGGAAATTT+TGG - chr2_3:11340078-11340097 Msa0278340:intron 35.0%
! ATTTTGCAGCATGTTCGAAA+GGG + chr2_3:11340195-11340214 None:intergenic 35.0%
! TATTTTGCAGCATGTTCGAA+AGG + chr2_3:11340196-11340215 None:intergenic 35.0%
GCAAAATATCATGTATGGCT+AGG - chr2_3:11340208-11340227 Msa0278340:CDS 35.0%
GAGTAAAAATCACCATTGTG+AGG + chr2_3:11340237-11340256 None:intergenic 35.0%
! ATGGTGATTTTTACTCTCCA+TGG - chr2_3:11340241-11340260 Msa0278340:CDS 35.0%
CAATAACATAGAAGAGTCCA+TGG + chr2_3:11340261-11340280 None:intergenic 35.0%
GACTCTTCTATGTTATTGAG+TGG - chr2_3:11340263-11340282 Msa0278340:CDS 35.0%
CTATGTTATTGAGTGGCTAA+TGG - chr2_3:11340270-11340289 Msa0278340:CDS 35.0%
GAAGACTCACTTCTTGAATT+AGG + chr2_3:11340303-11340322 None:intergenic 35.0%
! CAACTACCTTTGAAGGATTT+AGG + chr2_3:11340389-11340408 None:intergenic 35.0%
CATTCTAATAACTGCAAAGG+GGG + chr2_3:11340466-11340485 None:intergenic 35.0%
CCATTCTAATAACTGCAAAG+GGG + chr2_3:11340467-11340486 None:intergenic 35.0%
!!! TGGCGACTTTATTTTTGCTA+TGG - chr2_3:11340648-11340667 Msa0278340:CDS 35.0%
!!! TTTATTTTTGCTATGGCTGC+TGG - chr2_3:11340655-11340674 Msa0278340:CDS 35.0%
! TTATGCTTGATCGATTTCTG+AGG - chr2_3:11340692-11340711 Msa0278340:CDS 35.0%
CATTTACTGTCCTTCTTGAT+TGG + chr2_3:11340723-11340742 None:intergenic 35.0%
CAGTAAATGTAATCTCATCG+AGG - chr2_3:11340734-11340753 Msa0278340:CDS 35.0%
CTTGAAGGAAAATGAAGCTT+AGG + chr2_3:11340914-11340933 None:intergenic 35.0%
!! GCTTCATTTTCCTTCAAGTT+CGG - chr2_3:11340916-11340935 Msa0278340:intron 35.0%
!! CTTCATTTTCCTTCAAGTTC+GGG - chr2_3:11340917-11340936 Msa0278340:intron 35.0%
GCTGTTCTTATTAAGGTTCT+TGG - chr2_3:11341008-11341027 Msa0278340:CDS 35.0%
TTTATCTGTTCAGCCTCATA+CGG - chr2_3:11341085-11341104 Msa0278340:CDS 35.0%
ACCATATCACTTGATGTAAG+TGG - chr2_3:11341148-11341167 Msa0278340:CDS 35.0%
GAAAACCTTATATTAGTGGC+AGG - chr2_3:11341337-11341356 Msa0278340:intron 35.0%
GAATATCGCTCAATATAGCA+AGG + chr2_3:11341384-11341403 None:intergenic 35.0%
ACAGATTGTTTCCATGTCAA+CGG + chr2_3:11341500-11341519 None:intergenic 35.0%
ATGTACATATCTTCGTCACT+CGG - chr2_3:11341548-11341567 Msa0278340:CDS 35.0%
AAAGTTAGACTAACCAATGG+AGG + chr2_3:11341583-11341602 None:intergenic 35.0%
! TTGTTATTATCTGCAGGAAG+AGG - chr2_3:11341893-11341912 Msa0278340:intron 35.0%
TGTTATTATCTGCAGGAAGA+GGG - chr2_3:11341894-11341913 Msa0278340:intron 35.0%
! AAGGGACAGAGTGATTTTAT+TGG + chr2_3:11341933-11341952 None:intergenic 35.0%
TAATCACTAGGCATAGGAAA+GGG + chr2_3:11341951-11341970 None:intergenic 35.0%
ATAATCACTAGGCATAGGAA+AGG + chr2_3:11341952-11341971 None:intergenic 35.0%
TTTCCTATGCCTAGTGATTA+TGG - chr2_3:11341951-11341970 Msa0278340:intron 35.0%
ATTCCATAATCACTAGGCAT+AGG + chr2_3:11341957-11341976 None:intergenic 35.0%
TGATTATGGAATGTCTGGTT+TGG - chr2_3:11341965-11341984 Msa0278340:intron 35.0%
TTGGTACAGGAAACAATTTC+TGG - chr2_3:11341988-11342007 Msa0278340:intron 35.0%
AAGTAAGATCACAAAGCCTA+AGG + chr2_3:11342039-11342058 None:intergenic 35.0%
!! ATCCAGTTGGATTGGTTATA+TGG - chr2_3:11342084-11342103 Msa0278340:intron 35.0%
TTGGTTATATGGTGGTACAA+AGG - chr2_3:11342095-11342114 Msa0278340:intron 35.0%
TGGTTATATGGTGGTACAAA+GGG - chr2_3:11342096-11342115 Msa0278340:intron 35.0%
GGAAAAGCAAAGTTCTCTAA+AGG - chr2_3:11342193-11342212 Msa0278340:intron 35.0%
GGATAAGTCCAATAACATCA+AGG - chr2_3:11342214-11342233 Msa0278340:intron 35.0%
TGTCTGACTACACTAAGTTT+AGG + chr2_3:11342573-11342592 None:intergenic 35.0%
CGATTCACGATTTGAAAAGT+AGG - chr2_3:11342876-11342895 Msa0278340:intron 35.0%
TGAATCACTTATCATGAGCT+TGG - chr2_3:11342938-11342957 Msa0278340:intron 35.0%
CCTCTTCCACATTGTAAAAA+AGG + chr2_3:11343041-11343060 None:intergenic 35.0%
!!! CCTTTTTTACAATGTGGAAG+AGG - chr2_3:11343038-11343057 Msa0278340:CDS 35.0%
TGTGGAAGAGGTTACTAATA+TGG - chr2_3:11343050-11343069 Msa0278340:CDS 35.0%
GAATCAATGTCAGAGAAATG+GGG - chr2_3:11343097-11343116 Msa0278340:intron 35.0%
CTAGAATACCAACATCAACA+TGG + chr2_3:11343123-11343142 None:intergenic 35.0%
!! GATGTTGGTATTCTAGTTTG+TGG - chr2_3:11343127-11343146 Msa0278340:intron 35.0%
! CAGCTACTAAATGGACTCTT+AGG - chr2_3:11338331-11338350 Msa0278340:three_prime_UTR 40.0%
TTACCATCAGAATCTGTGCA+TGG - chr2_3:11338402-11338421 Msa0278340:three_prime_UTR 40.0%
AATCCATGCACAGATTCTGA+TGG + chr2_3:11338408-11338427 None:intergenic 40.0%
AAACTACTTGTGTGTTGTGC+AGG - chr2_3:11338687-11338706 Msa0278340:intron 40.0%
GATCCTCCCCAGAAATAATT+AGG + chr2_3:11338773-11338792 None:intergenic 40.0%
!! TTGACATGGATTTTGATGGC+AGG - chr2_3:11339067-11339086 Msa0278340:intron 40.0%
TAGGCGAAATCTTGGATACT+TGG + chr2_3:11339103-11339122 None:intergenic 40.0%
AGTATCCAAGATTTCGCCTA+TGG - chr2_3:11339103-11339122 Msa0278340:intron 40.0%
AAAGTCCATAGGCGAAATCT+TGG + chr2_3:11339111-11339130 None:intergenic 40.0%
TAAGGATCGGAAAAGTCCAT+AGG + chr2_3:11339122-11339141 None:intergenic 40.0%
CCTTATCAATGGACCATTTG+GGG - chr2_3:11339137-11339156 Msa0278340:intron 40.0%
AACCTCTTGAAACCAGTCTT+TGG - chr2_3:11339377-11339396 Msa0278340:intron 40.0%
!! TACCAAAGACTGGTTTCAAG+AGG + chr2_3:11339382-11339401 None:intergenic 40.0%
AACCAGTCTTTGGTACGTTA+AGG - chr2_3:11339387-11339406 Msa0278340:intron 40.0%
TTCCTTAACGTACCAAAGAC+TGG + chr2_3:11339392-11339411 None:intergenic 40.0%
CAGTTTATGGAGAGGATTGT+TGG + chr2_3:11339582-11339601 None:intergenic 40.0%
! AGCCATATTTTGTCCGATGT+GGG + chr2_3:11339760-11339779 None:intergenic 40.0%
ACCGACAATAGTCATTAGCA+TGG - chr2_3:11339949-11339968 Msa0278340:intron 40.0%
AGAACAGATCCCCTTGAAAT+CGG + chr2_3:11340154-11340173 None:intergenic 40.0%
CGAAAGGGATATCTATGAAG+CGG + chr2_3:11340180-11340199 None:intergenic 40.0%
GTTATTGAGTGGCTAATGGA+AGG - chr2_3:11340274-11340293 Msa0278340:CDS 40.0%
CCCCTTTGCAGTTATTAGAA+TGG - chr2_3:11340464-11340483 Msa0278340:intron 40.0%
ACATCAACAAACCAGCTACA+AGG + chr2_3:11340528-11340547 None:intergenic 40.0%
!! TTGTAGCTGGTTTGTTGATG+TGG - chr2_3:11340527-11340546 Msa0278340:intron 40.0%
!! TGTAGCTGGTTTGTTGATGT+GGG - chr2_3:11340528-11340547 Msa0278340:intron 40.0%
! GTGTTCATGGCTTTGCATAT+TGG - chr2_3:11340628-11340647 Msa0278340:CDS 40.0%
ACGATAATTCCCGAACTTGA+AGG + chr2_3:11340929-11340948 None:intergenic 40.0%
! TTCAAGTTCGGGAATTATCG+TGG - chr2_3:11340928-11340947 Msa0278340:intron 40.0%
GTTTCTTCTAGCCCTTTAGA+TGG - chr2_3:11340972-11340991 Msa0278340:intron 40.0%
TATGGTACTTCGTGTCCATA+TGG + chr2_3:11341134-11341153 None:intergenic 40.0%
GCCACTTACATCAAGTGATA+TGG + chr2_3:11341152-11341171 None:intergenic 40.0%
AACCTTATATTAGTGGCAGG+TGG - chr2_3:11341340-11341359 Msa0278340:intron 40.0%
TACCACCTGCCACTAATATA+AGG + chr2_3:11341345-11341364 None:intergenic 40.0%
ATATTAGTGGCAGGTGGTAT+TGG - chr2_3:11341346-11341365 Msa0278340:intron 40.0%
TCGCTCAATATAGCAAGGAA+AGG + chr2_3:11341379-11341398 None:intergenic 40.0%
TGTACATATCTTCGTCACTC+GGG - chr2_3:11341549-11341568 Msa0278340:CDS 40.0%
! ATGTTTAAAACCACGGTCGT+CGG - chr2_3:11341850-11341869 Msa0278340:intron 40.0%
CCAGACATTCCATAATCACT+AGG + chr2_3:11341963-11341982 None:intergenic 40.0%
CCTAGTGATTATGGAATGTC+TGG - chr2_3:11341960-11341979 Msa0278340:intron 40.0%
!! TATGGAATGTCTGGTTTGGT+TGG - chr2_3:11341969-11341988 Msa0278340:intron 40.0%
!! ACAGGAAACAATTTCTGGTC+TGG - chr2_3:11341993-11342012 Msa0278340:intron 40.0%
CACCATATAACCAATCCAAC+TGG + chr2_3:11342089-11342108 None:intergenic 40.0%
!! CAGTTGGATTGGTTATATGG+TGG - chr2_3:11342087-11342106 Msa0278340:intron 40.0%
GTTGCAGGTGTAGTTATCTT+CGG - chr2_3:11342140-11342159 Msa0278340:intron 40.0%
AGTTATCTTCGGTGGTATAG+TGG - chr2_3:11342151-11342170 Msa0278340:intron 40.0%
! GTGGTATAGTGGTTGGATTT+TGG - chr2_3:11342162-11342181 Msa0278340:intron 40.0%
!! TGGTTGGATTTTGGCATATG+TGG - chr2_3:11342171-11342190 Msa0278340:intron 40.0%
!! GGTTGGATTTTGGCATATGT+GGG - chr2_3:11342172-11342191 Msa0278340:intron 40.0%
! AATTGAGCAAAATGGCTCTG+TGG - chr2_3:11342244-11342263 Msa0278340:intron 40.0%
TGGGATTCACCATAGAGAAT+CGG + chr2_3:11342529-11342548 None:intergenic 40.0%
CGCAAAATAAGCTCAAAGCA+AGG + chr2_3:11342833-11342852 None:intergenic 40.0%
! CAAGTGTTGCACAAGAAATC+AGG - chr2_3:11343167-11343186 Msa0278340:intron 40.0%
AAATGGAAGATGGGGTGATA+AGG + chr2_3:11343214-11343233 None:intergenic 40.0%
TGACTGTGGAAATGGAAGAT+GGG + chr2_3:11343223-11343242 None:intergenic 40.0%
ATGACTGTGGAAATGGAAGA+TGG + chr2_3:11343224-11343243 None:intergenic 40.0%
CAAAGCTATGACTGTGGAAA+TGG + chr2_3:11343231-11343250 None:intergenic 40.0%
AGAGATCAAAGCTATGACTG+TGG + chr2_3:11343237-11343256 None:intergenic 40.0%
GAAGACATACCTTCAACCAA+TGG - chr2_3:11343283-11343302 Msa0278340:intron 40.0%
!! CATGCTTTTCCATTGGTTGA+AGG + chr2_3:11343295-11343314 None:intergenic 40.0%
ACTCTATAAGGAACTCTGAG+TGG - chr2_3:11343486-11343505 Msa0278340:CDS 40.0%
CTCTATAAGGAACTCTGAGT+GGG - chr2_3:11343487-11343506 Msa0278340:CDS 40.0%
CTATATGTTCCCTTCGTTGA+AGG - chr2_3:11343701-11343720 Msa0278340:five_prime_UTR 40.0%
TTCAGCAGTGGAACTTCCTT+TGG - chr2_3:11338447-11338466 Msa0278340:three_prime_UTR 45.0%
!! GGAACTTCCTTTGGAATCAC+AGG - chr2_3:11338456-11338475 Msa0278340:three_prime_UTR 45.0%
CCCCAAATGGTCCATTGATA+AGG + chr2_3:11339140-11339159 None:intergenic 45.0%
GTTGCAGAAACAACCCCAAA+TGG + chr2_3:11339153-11339172 None:intergenic 45.0%
GTTTCTGCAACAGAGCTCAT+TGG - chr2_3:11339162-11339181 Msa0278340:intron 45.0%
GTCCCACATCGGACAAAATA+TGG - chr2_3:11339755-11339774 Msa0278340:CDS 45.0%
! GAGCCATATTTTGTCCGATG+TGG + chr2_3:11339761-11339780 None:intergenic 45.0%
CCTTACAAAACCAGCTTGTG+AGG + chr2_3:11339816-11339835 None:intergenic 45.0%
!!! CCTCACAAGCTGGTTTTGTA+AGG - chr2_3:11339813-11339832 Msa0278340:CDS 45.0%
!!! GGAAATTTTGGGACTCCGTT+CGG - chr2_3:11340090-11340109 Msa0278340:intron 45.0%
!!! GAAATTTTGGGACTCCGTTC+GGG - chr2_3:11340091-11340110 Msa0278340:intron 45.0%
CGGGATTGGATTAATGTGCT+TGG - chr2_3:11340114-11340133 Msa0278340:intron 45.0%
!! ATTGGTGTTGCCAATCTAGC+AGG - chr2_3:11340493-11340512 Msa0278340:intron 45.0%
GCTGATAACTCCTGCTAGAT+TGG + chr2_3:11340506-11340525 None:intergenic 45.0%
TGAGGTTCTGCCAATCAAGA+AGG - chr2_3:11340710-11340729 Msa0278340:CDS 45.0%
TTTCCACAGTACCACAAGGA+AGG + chr2_3:11340762-11340781 None:intergenic 45.0%
TCCTTGTGGTACTGTGGAAA+TGG - chr2_3:11340762-11340781 Msa0278340:CDS 45.0%
ACCATTTCCACAGTACCACA+AGG + chr2_3:11340766-11340785 None:intergenic 45.0%
GGGCTAGAAGAAACACTGAA+TGG + chr2_3:11340966-11340985 None:intergenic 45.0%
AAGGTTCTTGGCAAATGGAC+CGG - chr2_3:11341020-11341039 Msa0278340:CDS 45.0%
GATTCTTTCTCTTAACCCCC+CGG + chr2_3:11341042-11341061 None:intergenic 45.0%
TCATACGGTGGTAACAGCTT+CGG - chr2_3:11341100-11341119 Msa0278340:CDS 45.0%
CGATATTCTCCATCGTGTGA+GGG - chr2_3:11341396-11341415 Msa0278340:intron 45.0%
ATGTCAACGGTCGAAAGAAG+TGG + chr2_3:11341487-11341506 None:intergenic 45.0%
ACTTCTTTCGACCGTTGACA+TGG - chr2_3:11341486-11341505 Msa0278340:CDS 45.0%
GTCGTAGATGTAGGCACAAT+TGG - chr2_3:11341769-11341788 Msa0278340:intron 45.0%
!! ATGTCTGGTTTGGTTGGTAC+AGG - chr2_3:11341975-11341994 Msa0278340:intron 45.0%
GCTACTACTTGTAGTCTGCA+TGG - chr2_3:11342118-11342137 Msa0278340:intron 45.0%
ATCTTCGGTGGTATAGTGGT+TGG - chr2_3:11342155-11342174 Msa0278340:intron 45.0%
! AAATGGCTCTGTGGATCACA+AGG - chr2_3:11342253-11342272 Msa0278340:intron 45.0%
CTACCATACAGTATGGCTCT+AGG - chr2_3:11342306-11342325 Msa0278340:intron 45.0%
TCTTGAGTCCCGATTCTCTA+TGG - chr2_3:11342517-11342536 Msa0278340:CDS 45.0%
GGGATTCACCATAGAGAATC+GGG + chr2_3:11342528-11342547 None:intergenic 45.0%
AAATGGGGCCATGTTGATGT+TGG - chr2_3:11343112-11343131 Msa0278340:intron 45.0%
ACACTTGACTGAAGAGTTGG+AGG + chr2_3:11343154-11343173 None:intergenic 45.0%
GCAACACTTGACTGAAGAGT+TGG + chr2_3:11343157-11343176 None:intergenic 45.0%
GACTGTGGAAATGGAAGATG+GGG + chr2_3:11343222-11343241 None:intergenic 45.0%
GTAATCCTCACCTCACAAGC+TGG - chr2_3:11339803-11339822 Msa0278340:CDS 50.0%
CAAAACCAGCTTGTGAGGTG+AGG + chr2_3:11339811-11339830 None:intergenic 50.0%
TTAATCCAATCCCGCCCGAA+CGG + chr2_3:11340108-11340127 None:intergenic 50.0%
ATGGCTAGGACACCTCACAA+TGG - chr2_3:11340222-11340241 Msa0278340:CDS 50.0%
! GGAGTTATCAGCCTTGTAGC+TGG - chr2_3:11340514-11340533 Msa0278340:intron 50.0%
AAATTCCACGTTCGCACTCC+AGG + chr2_3:11340565-11340584 None:intergenic 50.0%
GGGAATTATCGTGGCTTCAG+TGG - chr2_3:11340937-11340956 Msa0278340:intron 50.0%
AGGTTCTTGGCAAATGGACC+GGG - chr2_3:11341021-11341040 Msa0278340:CDS 50.0%
ATCTGTTCAGCCTCATACGG+TGG - chr2_3:11341088-11341107 Msa0278340:CDS 50.0%
GAAGCTGTTACCACCGTATG+AGG + chr2_3:11341101-11341120 None:intergenic 50.0%
GTGGTAACAGCTTCGGTTGA+GGG - chr2_3:11341107-11341126 Msa0278340:CDS 50.0%
TGGTAACAGCTTCGGTTGAG+GGG - chr2_3:11341108-11341127 Msa0278340:CDS 50.0%
GCGATATTCTCCATCGTGTG+AGG - chr2_3:11341395-11341414 Msa0278340:intron 50.0%
ATTCTCCATCGTGTGAGGGA+TGG - chr2_3:11341400-11341419 Msa0278340:intron 50.0%
TTCTCCATCGTGTGAGGGAT+GGG - chr2_3:11341401-11341420 Msa0278340:intron 50.0%
TCGGGAATCAGATCCTCCAT+TGG - chr2_3:11341567-11341586 Msa0278340:CDS 50.0%
CATCTACGACTGCAGAGAGT+GGG + chr2_3:11341759-11341778 None:intergenic 50.0%
ACATCTACGACTGCAGAGAG+TGG + chr2_3:11341760-11341779 None:intergenic 50.0%
CTCTCTGCAGTCGTAGATGT+AGG - chr2_3:11341760-11341779 Msa0278340:intron 50.0%
CTTGTAGTCTGCATGGTTGC+AGG - chr2_3:11342125-11342144 Msa0278340:intron 50.0%
GCAGGTGTAGTTATCTTCGG+TGG - chr2_3:11342143-11342162 Msa0278340:intron 50.0%
TGGCCTAGAGCCATACTGTA+TGG + chr2_3:11342312-11342331 None:intergenic 50.0%
!! GGCTCTAGGCCAGACTTTAA+AGG - chr2_3:11342320-11342339 Msa0278340:intron 50.0%
ATGGAGAGGATTGTTGGCCG+TGG + chr2_3:11339576-11339595 None:intergenic 55.0%
!!! ATTTTGGGACTCCGTTCGGG+CGG - chr2_3:11340094-11340113 Msa0278340:intron 55.0%
! TCATCGAGGTGCCTTCCTTG+TGG - chr2_3:11340748-11340767 Msa0278340:CDS 55.0%
GTGCCTTCCTTGTGGTACTG+TGG - chr2_3:11340756-11340775 Msa0278340:CDS 55.0%
GGTTCTTGGCAAATGGACCG+GGG - chr2_3:11341022-11341041 Msa0278340:CDS 55.0%
GTTCTTGGCAAATGGACCGG+GGG - chr2_3:11341023-11341042 Msa0278340:CDS 55.0%
TTCTTGGCAAATGGACCGGG+GGG - chr2_3:11341024-11341043 Msa0278340:CDS 55.0%
GGTGGTAACAGCTTCGGTTG+AGG - chr2_3:11341106-11341125 Msa0278340:CDS 55.0%
GTTTCCCATCCCTCACACGA+TGG + chr2_3:11341408-11341427 None:intergenic 55.0%
AGAATAGTGACCGACGACCG+TGG + chr2_3:11341863-11341882 None:intergenic 55.0%
!!! TTTTGGGACTCCGTTCGGGC+GGG - chr2_3:11340095-11340114 Msa0278340:intron 60.0%
ATGTGGGTGACCTCGCTTCC+TGG - chr2_3:11340544-11340563 Msa0278340:intron 60.0%
GCTTCGGTTGAGGGGCCATA+TGG - chr2_3:11341116-11341135 Msa0278340:CDS 60.0%
CGTTCGCACTCCAGGAAGCG+AGG + chr2_3:11340557-11340576 None:intergenic 65.0%
CGCTTCCTGGAGTGCGAACG+TGG - chr2_3:11340557-11340576 Msa0278340:intron 65.0%
GGACTCCGTTCGGGCGGGAT+TGG - chr2_3:11340100-11340119 Msa0278340:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 11338007 11343771 11338007 ID=Msa0278340;Name=Msa0278340
chr2_3 mRNA 11338007 11343771 11338007 ID=Msa0278340-mRNA-1;Parent=Msa0278340;Name=Msa0278340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=227|1|1|1|1|1|9|513|740
chr2_3 exon 11338007 11338689 11338007 ID=Msa0278340-mRNA-1:exon:5117;Parent=Msa0278340-mRNA-1
chr2_3 exon 11339437 11339869 11339437 ID=Msa0278340-mRNA-1:exon:5116;Parent=Msa0278340-mRNA-1
chr2_3 exon 11340190 11340445 11340190 ID=Msa0278340-mRNA-1:exon:5115;Parent=Msa0278340-mRNA-1
chr2_3 exon 11340616 11340883 11340616 ID=Msa0278340-mRNA-1:exon:5114;Parent=Msa0278340-mRNA-1
chr2_3 exon 11340976 11341303 11340976 ID=Msa0278340-mRNA-1:exon:5113;Parent=Msa0278340-mRNA-1
chr2_3 exon 11341466 11341700 11341466 ID=Msa0278340-mRNA-1:exon:5112;Parent=Msa0278340-mRNA-1
chr2_3 exon 11342495 11342689 11342495 ID=Msa0278340-mRNA-1:exon:5111;Parent=Msa0278340-mRNA-1
chr2_3 exon 11342976 11343069 11342976 ID=Msa0278340-mRNA-1:exon:5110;Parent=Msa0278340-mRNA-1
chr2_3 exon 11343301 11343771 11343301 ID=Msa0278340-mRNA-1:exon:5109;Parent=Msa0278340-mRNA-1
chr2_3 five_prime_UTR 11343545 11343771 11343545 ID=Msa0278340-mRNA-1:five_prime_utr;Parent=Msa0278340-mRNA-1
chr2_3 CDS 11343301 11343544 11343301 ID=Msa0278340-mRNA-1:cds;Parent=Msa0278340-mRNA-1
chr2_3 CDS 11342976 11343069 11342976 ID=Msa0278340-mRNA-1:cds;Parent=Msa0278340-mRNA-1
chr2_3 CDS 11342495 11342689 11342495 ID=Msa0278340-mRNA-1:cds;Parent=Msa0278340-mRNA-1
chr2_3 CDS 11341466 11341700 11341466 ID=Msa0278340-mRNA-1:cds;Parent=Msa0278340-mRNA-1
chr2_3 CDS 11340976 11341303 11340976 ID=Msa0278340-mRNA-1:cds;Parent=Msa0278340-mRNA-1
chr2_3 CDS 11340616 11340883 11340616 ID=Msa0278340-mRNA-1:cds;Parent=Msa0278340-mRNA-1
chr2_3 CDS 11340190 11340445 11340190 ID=Msa0278340-mRNA-1:cds;Parent=Msa0278340-mRNA-1
chr2_3 CDS 11339437 11339869 11339437 ID=Msa0278340-mRNA-1:cds;Parent=Msa0278340-mRNA-1
chr2_3 CDS 11338520 11338689 11338520 ID=Msa0278340-mRNA-1:cds;Parent=Msa0278340-mRNA-1
chr2_3 three_prime_UTR 11338007 11338519 11338007 ID=Msa0278340-mRNA-1:three_prime_utr;Parent=Msa0278340-mRNA-1
Gene Sequence

>Msa0278340

ATGGAGAAAAATTCTGTTGATTATAGTCCTTTGCTTTCTAAGAAAGGTGATGAAACTGATGGTTATGTTAAAAAAAATTCACCTAATTTTGTTGTGTCAGCTACTAAATGGACTCTTAGGACTTTGATTTCCATAATCTTCATTATATGGGCTGCTTTCATTTTTCTGTTACCATCAGAATCTGTGCATGGATTGTTCACAAAATGGCTTAATTTCAGCAGTGGAACTTCCTTTGGAATCACAGGAAGCATTTTACTGATTCTCAGTGCTCCTGTTCTTGCAATTGCATTTCTTGCCATTGCATACCTAATTATTTCTGGGGAGGATCAGCTTCCTGAGAAGAAGACTTCCAAGTATCCAAGATTTCGCCTATGGACTTTTCCGATCCTTATCAATGGACCATTTGGGGTTGTTTCTGCAACAGAGCTCATTGGAATTGTCATTTTTTTGGCATATGTTATTTGGGCTTTCTATGCTTATACTATGCAGGCTCTTGCAGCTATGTCTTATCAGTTATCATTTAGAGCCAAGAGCTTGCACATGTTGGAAATTTTGGGACTCCGTTCGGGCGGGATTGGATTAATGTGCTTGGCGTTTTTATTTATACCGATTTCAAGGGGATCTGTTCTTCTCCGCTTCATAGATATCCCTTTCGAACATGCTGCAAAATATCATGTATGGCTAGGACACCTCACAATGGTGATTTTTACTCTCCATGGACTCTTCTATGTTATTGAGTGGCTAATGGAAGGTCACCTAATTCAAGAATTATTAGAATGGAAAGATATTGGTGTTGCCAATCTAGCAGGAGTTATCAGCCTTGTAGCTGGTTTGTTGATGTGGGTGACCTCGCTTCCTGGAGTGCGAACGTGGAATTTTGAGCTGTTTTTCTACACTCACCAATTATACATAATCTTTATTGTGTTCATGGCTTTGCATATTGGCGACTTTATTTTTGCTATGGCTGCTGGACCAATATTTCTTTTTATGCTTGATCGATTTCTGAGGTTCTGCCAATCAAGAAGGACAGTAAATGTAATCTCATCGAGGTGCCTTCCTTGTGGTACTGTGGAAATGGTTCTGTCAAAACCACAAAATTTGAGATACAATGCCCTAAGCTTCATTTTCCTTCAAGTTCGGGAATTATCGTGGCTTCAGTGGCATCCATTCAGTGTTTCTTCTAGCCCTTTAGATGGAAAAAATCACATTGCTGTTCTTATTAAGGTTCTTGGCAAATGGACCGGGGGGTTAAGAGAAAGAATCACTGAAGGTGATGCAACAGAAAATTTATCTGTTCAGCCTCATACGGTGGTAACAGCTTCGGTTGAGGGGCCATATGGACACGAAGTACCATATCACTTGATGTACGAAAACCTTATATTAGTGGCAGGTGGTATTGGACTTTCGCCTTTCCTTGCTATATTGAGCGATATTCTCCATCGTGTGAGGGATGGGAAACCTTGTCGACCAAGAAATATTTTAATTGTTTGGGCAGTGAAAAAGTCAAATGAGCTTCCACTTCTTTCGACCGTTGACATGGAAACAATCTGTCCACGCTTTTCTGATAAAGTAAATATCAATGTACATATCTTCGTCACTCGGGAATCAGATCCTCCATTGGAAGAGGGATATAATTACAAACCAATAAAATCACTCTGTCCCTTTCCTATGCCTAGTGATTATGGAATGTCTGGTTTGGTTGGTACAGGAAACAATTTCTGGTCTGGACTATATGTCATTTCATCTACCTTAGGCTTTGTGATCTTACTTGCTTTGTTGAATATTTACTATATAAATCCAGTTGGATTGGTTATATGGTGGTACAAAGGGCTACTACTTGTAGTCTGCATGGTTGCAGGTGTAGTTATCTTCGGTGGTATAGTGGTTGGATTTTGGCATATGTGGGAAAAGCAAAGTTCTCTAAAGGATAAGTCCAATAACATCAAGGTTGATAAAATTGAGCAAAATGGCTCTGTGGATCACAAGGATCTAAGTCAATACAATATTGCAAAGTTAACTACCATACAGTATGGCTCTAGGCCAGACTTTAAAGAGATTTTTGAATCAATGTCAGAGAAATGGGGCCATGTTGATGTTGGTATTCTAGTTTGTGGTCCTCCAACTCTTCAGTCAAGTGTTGCACAAGAAATCAGGTCACATAGTTTGACAAGACAACCTTATCACCCCATCTTCCATTTCCACAGTCATAGCTTTGATCTCTAG
Protein sequence

>Msa0278340

MEKNSVDYSPLLSKKGDETDGYVKKNSPNFVVSATKWTLRTLISIIFIIWAAFIFLLPSESVHGLFTKWLNFSSGTSFGITGSILLILSAPVLAIAFLAIAYLIISGEDQLPEKKTSKYPRFRLWTFPILINGPFGVVSATELIGIVIFLAYVIWAFYAYTMQALAAMSYQLSFRAKSLHMLEILGLRSGGIGLMCLAFLFIPISRGSVLLRFIDIPFEHAAKYHVWLGHLTMVIFTLHGLFYVIEWLMEGHLIQELLEWKDIGVANLAGVISLVAGLLMWVTSLPGVRTWNFELFFYTHQLYIIFIVFMALHIGDFIFAMAAGPIFLFMLDRFLRFCQSRRTVNVISSRCLPCGTVEMVLSKPQNLRYNALSFIFLQVRELSWLQWHPFSVSSSPLDGKNHIAVLIKVLGKWTGGLRERITEGDATENLSVQPHTVVTASVEGPYGHEVPYHLMYENLILVAGGIGLSPFLAILSDILHRVRDGKPCRPRNILIVWAVKKSNELPLLSTVDMETICPRFSDKVNINVHIFVTRESDPPLEEGYNYKPIKSLCPFPMPSDYGMSGLVGTGNNFWSGLYVISSTLGFVILLALLNIYYINPVGLVIWWYKGLLLVVCMVAGVVIFGGIVVGFWHMWEKQSSLKDKSNNIKVDKIEQNGSVDHKDLSQYNIAKLTTIQYGSRPDFKEIFESMSEKWGHVDVGILVCGPPTLQSSVAQEIRSHSLTRQPYHPIFHFHSHSFDL*