AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384330 MtrunA17_Chr3g0141421 90.595 723 26 4 1 723 1 681 0.0 1315
Msa0384330 MtrunA17_Chr8g0384651 63.953 86 31 0 638 723 816 901 3.87e-32 134
Msa0384330 MtrunA17_Chr3g0130631 55.319 94 42 0 630 723 630 723 2.95e-30 127
Msa0384330 MtrunA17_Chr3g0125121 58.824 85 35 0 639 723 425 509 3.85e-27 116
Msa0384330 MtrunA17_Chr8g0376701 59.524 84 34 0 640 723 366 449 4.81e-27 115
Msa0384330 MtrunA17_Chr1g0155381 54.651 86 39 0 638 723 1272 1357 7.95e-27 117
Msa0384330 MtrunA17_Chr2g0304091 58.333 84 35 0 640 723 359 442 8.67e-25 108
Msa0384330 MtrunA17_Chr8g0372931 54.651 86 39 0 638 723 1343 1428 3.76e-24 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384330 AT1G75100.1 43.644 236 114 4 506 723 405 639 2.13e-49 184
Msa0384330 AT4G12770.1 62.353 85 32 0 639 723 795 879 6.71e-31 130
Msa0384330 AT4G12770.2 62.353 85 32 0 639 723 793 877 7.05e-31 130
Msa0384330 AT4G12780.3 54.639 97 41 1 630 723 769 865 3.10e-30 128
Msa0384330 AT4G12780.1 54.639 97 41 1 630 723 796 892 3.50e-30 128
Msa0384330 AT4G12780.2 61.176 85 33 0 639 723 798 882 3.86e-30 128
Msa0384330 AT1G21660.1 54.167 96 44 0 628 723 416 511 7.80e-30 125
Msa0384330 AT4G36520.1 52.475 101 45 1 626 723 1311 1411 1.55e-29 126
Msa0384330 AT1G75310.2 51.163 86 42 0 638 723 1355 1440 3.03e-26 116
Msa0384330 AT1G75310.1 51.163 86 42 0 638 723 1352 1437 3.08e-26 116
Msa0384330 AT1G30280.2 56.818 88 37 1 644 730 361 448 4.48e-23 103
Msa0384330 AT1G30280.1 58.025 81 33 1 644 723 361 441 9.17e-22 99.8

Find 182 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGCTTCTCTCGACTTTC+TGG 0.076935 3_1:+87381413 None:intergenic
TCCATTTCTCAATATATAAA+TGG 0.108600 3_1:-87382046 Msa0384330:CDS
TGTTTAGCTATTGCCAATTT+TGG 0.135755 3_1:-87379191 Msa0384330:three_prime_UTR
GATTTCTTTGATGATATATT+TGG 0.176321 3_1:-87383331 Msa0384330:CDS
CTTTGAATTCTTGAATTTCT+TGG 0.210654 3_1:+87380164 None:intergenic
GAAATGGAATTTATCATTAC+TGG 0.227553 3_1:+87382061 None:intergenic
AATCATAAAGCTCTATAGTT+TGG 0.228840 3_1:+87379125 None:intergenic
ATTCTGCTGTGACAAATTAT+TGG 0.231869 3_1:+87380901 None:intergenic
TCTAGAATCTTGCTTGAAAT+TGG 0.250165 3_1:-87379528 Msa0384330:three_prime_UTR
CTAGAAACATATACCAAAAT+TGG 0.261362 3_1:+87379178 None:intergenic
TCTTCCTTCTTTGGATTCAT+AGG 0.264090 3_1:+87381360 None:intergenic
TTATCATTACTGGTATTATT+AGG 0.276310 3_1:+87382071 None:intergenic
TTGGTATATGTTTCTAGTTT+TGG 0.279413 3_1:-87379172 Msa0384330:three_prime_UTR
GCTTTAGCATCATATGTAAT+AGG 0.281784 3_1:+87381660 None:intergenic
ATGGGAAAAGGCCGAGTTAA+AGG 0.292599 3_1:-87381255 Msa0384330:CDS
GAAGAACCATTGTATGTTAT+AGG 0.299531 3_1:+87381840 None:intergenic
AACTATAGAGCTTTATGATT+TGG 0.307360 3_1:-87379122 Msa0384330:three_prime_UTR
ACAGGCTTCCAGCCACAATT+TGG 0.308116 3_1:+87379756 None:intergenic
GTCCGCTCCATTTGCCAATA+TGG 0.309597 3_1:+87382343 None:intergenic
AATTAAATGCATTATCCATT+TGG 0.310611 3_1:+87379236 None:intergenic
GAACAGAGAATGTAATGATT+TGG 0.312610 3_1:+87381557 None:intergenic
ACTCTTATTAAAGATGTTCT+TGG 0.312920 3_1:-87381687 Msa0384330:CDS
GAGCTTTGGCGGAAATGATA+TGG 0.318249 3_1:+87381736 None:intergenic
ATCTCCTTCTTGGACTGTTC+AGG 0.335287 3_1:+87380953 None:intergenic
CAAAACCACATAATACAATA+TGG 0.337775 3_1:+87383807 None:intergenic
ATCATAAAGCTCTATAGTTT+GGG 0.351087 3_1:+87379126 None:intergenic
CCCATTTATATATTGAGAAA+TGG 0.354288 3_1:+87382045 None:intergenic
GAGGTTCTTTCTGTCCTAAA+AGG 0.357444 3_1:+87381993 None:intergenic
GATCAGCCTTCCTGCCATAT+TGG 0.360624 3_1:-87382357 Msa0384330:intron
AAATCTCTCCATTCAAAATC+TGG 0.362324 3_1:+87383621 None:intergenic
CGATGAATCTGGTTGAGCTT+TGG 0.366851 3_1:+87381722 None:intergenic
AAACAAGGTAAAGCTGTCTT+TGG 0.376422 3_1:-87381519 Msa0384330:CDS
GGTCTGTGCAATTCAAGTTC+AGG 0.377679 3_1:+87379266 None:intergenic
GGAGCGGACCTTCAGACATT+TGG 0.378166 3_1:-87382329 Msa0384330:CDS
CGACACAAAATCTCGACTTC+AGG 0.380047 3_1:-87381175 Msa0384330:CDS
ATTAAGCCCAGGCAGAAGTA+TGG 0.383465 3_1:-87381274 Msa0384330:CDS
GGAGGAGAGGAAGGTGAAAC+GGG 0.383656 3_1:-87383439 Msa0384330:CDS
TACGGTATAGATCTCCTTCT+TGG 0.394543 3_1:+87380943 None:intergenic
AACAGAGAATGTAATGATTT+GGG 0.395410 3_1:+87381558 None:intergenic
TCCAGATAAGTTGCAGCAAA+AGG 0.397099 3_1:-87379664 Msa0384330:CDS
TGACGGCTGCTCGATGAATC+TGG 0.398504 3_1:+87381711 None:intergenic
GCAGCAGCATCACGTCTCTT+TGG 0.402843 3_1:+87383265 None:intergenic
AACGGCATTGCTGCTTCAAA+TGG 0.405104 3_1:-87382275 Msa0384330:CDS
CAACGAGATGGTATTCTGTT+AGG 0.407563 3_1:-87383583 Msa0384330:CDS
TACCGTAGAGACCATTGATA+TGG 0.407659 3_1:-87380927 Msa0384330:CDS
TGGAGGAGAGGAAGGTGAAA+CGG 0.407731 3_1:-87383440 Msa0384330:CDS
TTCTCGCTCTCCGGTGGAGG+AGG 0.408716 3_1:+87383403 None:intergenic
AGACATTTGGTTCCCCTCCC+AGG 0.409281 3_1:-87382316 Msa0384330:CDS
GCCTGGGCTTAATGAACCTC+GGG 0.409633 3_1:+87381284 None:intergenic
AGCCTCTCATTCTACCTCTC+TGG 0.419367 3_1:+87383908 None:intergenic
CCATTTCTCAATATATAAAT+GGG 0.420049 3_1:-87382045 Msa0384330:CDS
CACAGACCACTTGTTCCAAA+TGG 0.424660 3_1:-87379251 Msa0384330:three_prime_UTR
GGAGTTAGGAGGAGAAGAAA+AGG 0.425412 3_1:-87383358 Msa0384330:CDS
CATCATGAATAAAGGTACTT+TGG 0.437239 3_1:-87379779 Msa0384330:intron
TTGGTGAGGATAGTGGAGTT+AGG 0.437366 3_1:-87383372 Msa0384330:CDS
GTGAGACGTCATCCTCGTCT+TGG 0.437976 3_1:+87380191 None:intergenic
CATCTTTAATAAGAGTTTGA+CGG 0.438109 3_1:+87381694 None:intergenic
AGACAAAAGAGGACAGGGTT+AGG 0.439469 3_1:+87383755 None:intergenic
ACAAGCAGAAAGGAGCTGTA+AGG 0.440799 3_1:-87381143 Msa0384330:CDS
GTTAAGTGGATTCGTACTCC+TGG 0.442167 3_1:+87382298 None:intergenic
GAAGCAAGTGGTTGAAGAGC+AGG 0.447957 3_1:+87383235 None:intergenic
TGAGACGTCATCCTCGTCTT+GGG 0.454537 3_1:+87380192 None:intergenic
TACTTTGGCCAAATTGTGGC+TGG 0.459275 3_1:-87379764 Msa0384330:CDS
GTAAGAATGTAAGGAACTAC+TGG 0.459573 3_1:-87379452 Msa0384330:three_prime_UTR
TTTATCCATATTGTATTATG+TGG 0.460211 3_1:-87383812 Msa0384330:five_prime_UTR
AAATCATTACATTCTCTGTT+CGG 0.460481 3_1:-87381555 Msa0384330:CDS
GATTTCCTCTGTGACGTGCT+CGG 0.462518 3_1:+87383532 None:intergenic
GAGAGCGAGAAACCCGTGTT+TGG 0.463425 3_1:-87383391 Msa0384330:CDS
GTGTAGTTGGCCTCCTCCAC+CGG 0.464078 3_1:-87383413 Msa0384330:CDS
CTTTGTCTACTTCATCAGAC+TGG 0.466557 3_1:+87382135 None:intergenic
CAGAATGATATCTCAGCATC+AGG 0.467976 3_1:-87380884 Msa0384330:intron
TGAATCTGGTTGAGCTTTGG+CGG 0.468974 3_1:+87381725 None:intergenic
GCAGCAATGCCGTTGTTAAG+TGG 0.469551 3_1:+87382284 None:intergenic
AAGTAAAGGTGTGGTGCCTT+TGG 0.470139 3_1:-87382021 Msa0384330:CDS
GTGAAACGGGTTGGTGTAGT+TGG 0.470900 3_1:-87383426 Msa0384330:CDS
AACACGGGTTTCTCGCTCTC+CGG 0.476144 3_1:+87383394 None:intergenic
CTTTGACCTTCCCTTTAACT+CGG 0.482481 3_1:+87381244 None:intergenic
TTTGGTGTTGAACACCCACT+TGG 0.483247 3_1:+87383283 None:intergenic
GTCAGTGACAATCCATTCCT+TGG 0.484645 3_1:+87381929 None:intergenic
TGAATTGTCACAGACAAAAG+AGG 0.485865 3_1:+87383744 None:intergenic
AATAGACTTTGCCTGTAAGT+TGG 0.486583 3_1:+87382182 None:intergenic
GGTTTCTCGCTCTCCGGTGG+AGG 0.486899 3_1:+87383400 None:intergenic
TTCTTTGATGATATATTTGG+AGG 0.488721 3_1:-87383328 Msa0384330:CDS
AAGATACAACAATGGTCTAA+AGG 0.488904 3_1:-87380041 Msa0384330:CDS
TGGGAAAAGGCCGAGTTAAA+GGG 0.491286 3_1:-87381254 Msa0384330:CDS
GACACAAAATCTCGACTTCA+GGG 0.493171 3_1:-87381174 Msa0384330:CDS
CCTCTTGTTGATATAATTGA+AGG 0.494291 3_1:-87379732 Msa0384330:CDS
ATAGTTTGGGTTACAAGCTA+AGG 0.494997 3_1:+87379139 None:intergenic
GTTATTGTTATAGCGAGGAA+TGG 0.495204 3_1:+87383653 None:intergenic
TCTTTCTATCTTTGTGTGTG+AGG 0.496628 3_1:-87381490 Msa0384330:CDS
GTCCTTCCATGAGAATTTCA+CGG 0.498360 3_1:-87380318 Msa0384330:intron
TGCCTGGGCTTAATGAACCT+CGG 0.498970 3_1:+87381283 None:intergenic
GTGAGGATAGTGGAGTTAGG+AGG 0.501713 3_1:-87383369 Msa0384330:CDS
ATTTGGTAGTCCAGTCCAAA+AGG 0.509447 3_1:-87379105 Msa0384330:three_prime_UTR
AGAGGTAGAATGAGAGGCTG+TGG 0.512253 3_1:-87383904 Msa0384330:five_prime_UTR
CTCTCCATTCAAAATCTGGC+GGG 0.513651 3_1:+87383625 None:intergenic
GAGAGGAAGGTGAAACGGGT+TGG 0.518346 3_1:-87383435 Msa0384330:CDS
ATATCAGCAAATGAAATGTC+AGG 0.519102 3_1:+87380356 None:intergenic
TCCACTATCCTCACCAAACA+CGG 0.519983 3_1:+87383378 None:intergenic
CATTATCCATTTGGAACAAG+TGG 0.526109 3_1:+87379245 None:intergenic
AATGCTCGAGCGCCAAGGAA+TGG 0.528812 3_1:-87381941 Msa0384330:CDS
CTTCCTGCCATATTGGCAAA+TGG 0.531469 3_1:-87382350 Msa0384330:CDS
AAAGGAAAACCTGAAGGATG+GGG 0.532252 3_1:+87383204 None:intergenic
TTAAGTGGATTCGTACTCCT+GGG 0.532485 3_1:+87382299 None:intergenic
CCAGATAAGTTGCAGCAAAA+GGG 0.532746 3_1:-87379663 Msa0384330:CDS
CAAGCAGAAAGGAGCTGTAA+GGG 0.533958 3_1:-87381142 Msa0384330:CDS
TCACTGACGATCCATTCCTT+AGG 0.534108 3_1:+87381885 None:intergenic
GGAATACCGTGAAATTCTCA+TGG 0.535466 3_1:+87380312 None:intergenic
AAAAGGAAAACCTGAAGGAT+GGG 0.538970 3_1:+87383203 None:intergenic
ATATATAAATGGGCAAGTAA+AGG 0.543545 3_1:-87382035 Msa0384330:CDS
CAATGGTCTAAAGGAAAGGA+AGG 0.544075 3_1:-87380032 Msa0384330:CDS
ACAAATGAGATAGTCTCTGA+TGG 0.547748 3_1:-87381618 Msa0384330:CDS
ATTATATCAACAAGAGGCAC+AGG 0.548095 3_1:+87379738 None:intergenic
TTAAGCCCAGGCAGAAGTAT+GGG 0.550489 3_1:-87381273 Msa0384330:CDS
AGCCATATCAATGGTCTCTA+CGG 0.552400 3_1:+87380925 None:intergenic
CACTCAAAATGATAGTCCTA+AGG 0.553900 3_1:-87381901 Msa0384330:CDS
GCTCCATTTGCCAATATGGC+AGG 0.554749 3_1:+87382347 None:intergenic
TGTCACAGACAAAAGAGGAC+AGG 0.556962 3_1:+87383749 None:intergenic
AAAATGATAGTCCTAAGGAA+TGG 0.557461 3_1:-87381896 Msa0384330:CDS
TACCGTGAAATTCTCATGGA+AGG 0.560118 3_1:+87380316 None:intergenic
GAAAAGGAAAACCTGAAGGA+TGG 0.560252 3_1:+87383202 None:intergenic
AGCCAGAGAGGTAGAATGAG+AGG 0.562797 3_1:-87383910 Msa0384330:five_prime_UTR
GGTTATAAGTACAAGCAGAA+AGG 0.564303 3_1:-87381153 Msa0384330:CDS
ATTATTGGCAGCCATATCAA+TGG 0.564382 3_1:+87380916 None:intergenic
TATTCCTATGAATCCAAAGA+AGG 0.566231 3_1:-87381364 Msa0384330:CDS
ACGGGTTTCTCGCTCTCCGG+TGG 0.566495 3_1:+87383397 None:intergenic
CAAAAGACAGATTCTAAGAG+AGG 0.566877 3_1:-87381330 Msa0384330:CDS
CCCCGAGGTTCATTAAGCCC+AGG 0.568675 3_1:-87381285 Msa0384330:CDS
CCAGGCAGAAGTATGGGAAA+AGG 0.572912 3_1:-87381267 Msa0384330:CDS
GTGGATTCGTACTCCTGGGA+GGG 0.575566 3_1:+87382303 None:intergenic
GTCCTAAAAGGCATCGCCAA+AGG 0.575764 3_1:+87382005 None:intergenic
ACAACAATGGTCTAAAGGAA+AGG 0.582355 3_1:-87380036 Msa0384330:CDS
GGATATGATGAGGATGAGAG+TGG 0.582864 3_1:-87383562 Msa0384330:CDS
TCGGTGAGTGGAGGAGAGGA+AGG 0.583090 3_1:-87383448 Msa0384330:CDS
ACAGGGTTAGGTAGTAGCAC+TGG 0.584838 3_1:+87383767 None:intergenic
AAAGTCGAGAGAAGCAAACA+TGG 0.586884 3_1:-87381409 Msa0384330:CDS
CCCGTGTTTGGTGAGGATAG+TGG 0.588065 3_1:-87383379 Msa0384330:CDS
AAGGAAAACCTGAAGGATGG+GGG 0.591397 3_1:+87383205 None:intergenic
CCTTCAATTATATCAACAAG+AGG 0.594887 3_1:+87379732 None:intergenic
CTCTTGTTGATATAATTGAA+GGG 0.595299 3_1:-87379731 Msa0384330:CDS
CAGGCAAAGTCTATTATCGA+AGG 0.598865 3_1:-87382174 Msa0384330:CDS
ACCACCGCGGAGGAGGTCAT+CGG 0.601531 3_1:-87383479 Msa0384330:CDS
GAGGTCATCGGTAAATTCAT+CGG 0.602396 3_1:-87383467 Msa0384330:CDS
TCTCTCCATTCAAAATCTGG+CGG 0.602843 3_1:+87383624 None:intergenic
AAGGTACTTTGGCCAAATTG+TGG 0.605347 3_1:-87379768 Msa0384330:CDS
GCGCGACTAGATTCAGTGCA+TGG 0.608032 3_1:+87379391 None:intergenic
GATAGTCCTATAACATACAA+TGG 0.611800 3_1:-87381846 Msa0384330:CDS
TGAGAAATGCTCGAGCGCCA+AGG 0.611961 3_1:-87381946 Msa0384330:CDS
AAATGATATGGTCTACACTC+TGG 0.612190 3_1:+87381748 None:intergenic
TGATCCTGAACAGTCCAAGA+AGG 0.614384 3_1:-87380957 Msa0384330:CDS
TTCATCGGTGAGTGGAGGAG+AGG 0.616967 3_1:-87383452 Msa0384330:CDS
TGGATTCGTACTCCTGGGAG+GGG 0.619234 3_1:+87382304 None:intergenic
CGAGAAACCCGTGTTTGGTG+AGG 0.619296 3_1:-87383386 Msa0384330:CDS
AGTTATTCTGAACAACGAGA+TGG 0.619852 3_1:-87383595 Msa0384330:CDS
AGGAAAACCTGAAGGATGGG+GGG 0.620328 3_1:+87383206 None:intergenic
CCACTATCCTCACCAAACAC+GGG 0.622155 3_1:+87383379 None:intergenic
TGCCATATTGGCAAATGGAG+CGG 0.623853 3_1:-87382345 Msa0384330:CDS
AAATTGTTATTGTTATAGCG+AGG 0.633146 3_1:+87383648 None:intergenic
TCGGTAAATTCATCGGTGAG+TGG 0.635101 3_1:-87383460 Msa0384330:CDS
GAGGGGAACCAAATGTCTGA+AGG 0.638577 3_1:+87382321 None:intergenic
CATTTGCCAATATGGCAGGA+AGG 0.645218 3_1:+87382351 None:intergenic
TAAATGGGCAAGTAAAGGTG+TGG 0.649679 3_1:-87382030 Msa0384330:CDS
TCACAGTCTCAAACTCCAAG+TGG 0.649969 3_1:-87383298 Msa0384330:CDS
ACCGATGACCTCCTCCGCGG+TGG 0.650721 3_1:+87383478 None:intergenic
GTAAATTCATCGGTGAGTGG+AGG 0.651296 3_1:-87383457 Msa0384330:CDS
CACAGTCTCAAACTCCAAGT+GGG 0.653516 3_1:-87383297 Msa0384330:CDS
CAGTCTGATGAAGTAGACAA+AGG 0.654264 3_1:-87382134 Msa0384330:CDS
GTCACAGACAAAAGAGGACA+GGG 0.654298 3_1:+87383750 None:intergenic
AAAAGGCCGAGTTAAAGGGA+AGG 0.661454 3_1:-87381250 Msa0384330:CDS
TTAGGACAGAAAGAACCTCA+AGG 0.665779 3_1:-87381989 Msa0384330:CDS
AGTGGATTCGTACTCCTGGG+AGG 0.672288 3_1:+87382302 None:intergenic
TGATATAATTGAAGGGAACG+CGG 0.688428 3_1:-87379724 Msa0384330:CDS
TGAAGTATTATCCCAAGACG+AGG 0.698525 3_1:-87380203 Msa0384330:CDS
TTGACAAGAAGATACAACAA+TGG 0.703082 3_1:-87380049 Msa0384330:CDS
GAATGGAACAGAACACAGAG+AGG 0.703488 3_1:+87383670 None:intergenic
TATAGCAAAGCTACTCCCCG+AGG 0.719005 3_1:-87381300 Msa0384330:CDS
TTTACCGATGACCTCCTCCG+CGG 0.727015 3_1:+87383475 None:intergenic
AGTACGAATCCACTTAACAA+CGG 0.729752 3_1:-87382293 Msa0384330:CDS
CCTGGGCTTAATGAACCTCG+GGG 0.733725 3_1:+87381285 None:intergenic
TATTGACAGTTATCACAGCG+TGG 0.744642 3_1:+87381463 None:intergenic
ACAATCCGAGCACGTCACAG+AGG 0.749424 3_1:-87383537 Msa0384330:CDS
TATTCTGTTAGGATATGATG+AGG 0.756116 3_1:-87383572 Msa0384330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACTAAAATTAAAACTTT+AGG - chr3_1:87380275-87380294 Msa0384330:intron 10.0%
!! ATACTAAAATTAAAACTTTA+GGG - chr3_1:87380276-87380295 Msa0384330:intron 10.0%
!!! AAAAAAGTATAGCATAAAAT+TGG + chr3_1:87379901-87379920 None:intergenic 15.0%
!!! ACTTTAAAACCATATTTTAA+AGG - chr3_1:87379999-87380018 Msa0384330:CDS 15.0%
!!! CTTTAAAACCATATTTTAAA+GGG - chr3_1:87380000-87380019 Msa0384330:CDS 15.0%
!! TACTAAAATTAAAACTTTAG+GGG - chr3_1:87380277-87380296 Msa0384330:intron 15.0%
!!! ATTTTTTAACATTTCAATTG+TGG + chr3_1:87380497-87380516 None:intergenic 15.0%
!! TTATGAATATGTTCTTAATT+TGG - chr3_1:87382240-87382259 Msa0384330:CDS 15.0%
!! TATGAATATGTTCTTAATTT+GGG - chr3_1:87382241-87382260 Msa0384330:CDS 15.0%
!!! GAACATATTTAATTTAACAA+TGG + chr3_1:87382745-87382764 None:intergenic 15.0%
!!! AAAAGTTTTTGATATTTTAC+AGG - chr3_1:87383423-87383442 Msa0384330:CDS 15.0%
!! TTTATCCATATTGTATTATG+TGG - chr3_1:87379221-87379240 Msa0384330:three_prime_UTR 20.0%
!!! GATTTCTTTGATGATATATT+TGG - chr3_1:87379702-87379721 Msa0384330:CDS 20.0%
!!! AGTTTTAACTTTGAAAAAGA+AGG + chr3_1:87379872-87379891 None:intergenic 20.0%
!!! GTAAAATTAGTTTACATTGA+CGG - chr3_1:87380058-87380077 Msa0384330:intron 20.0%
!! TTATCATTACTGGTATTATT+AGG + chr3_1:87380965-87380984 None:intergenic 20.0%
!! TCCATTTCTCAATATATAAA+TGG - chr3_1:87380987-87381006 Msa0384330:intron 20.0%
!! CCATTTCTCAATATATAAAT+GGG - chr3_1:87380988-87381007 Msa0384330:intron 20.0%
!! AAAGAGTAATAAAAAACAAG+AGG - chr3_1:87381219-87381238 Msa0384330:CDS 20.0%
!! TAGATACTCACATTATTAAA+AGG - chr3_1:87381947-87381966 Msa0384330:CDS 20.0%
!!! ATGAATATGTTCTTAATTTG+GGG - chr3_1:87382242-87382261 Msa0384330:CDS 20.0%
!!! TTGATGATTAAATTATGTGA+TGG - chr3_1:87382627-87382646 Msa0384330:intron 20.0%
!!! TATGGAATTTTCAATCAAAT+GGG + chr3_1:87383117-87383136 None:intergenic 20.0%
!!! ATATGGAATTTTCAATCAAA+TGG + chr3_1:87383118-87383137 None:intergenic 20.0%
!!! TTTTAGAACAATTTTGTACT+TGG + chr3_1:87383227-87383246 None:intergenic 20.0%
!!! AGTACAAAATTGTTCTAAAA+TGG - chr3_1:87383227-87383246 Msa0384330:CDS 20.0%
!!! ATGTTTTTTGTAAGAATGTA+AGG - chr3_1:87383572-87383591 Msa0384330:CDS 20.0%
!!! ATATTACAAAGCTTTTTATC+TGG - chr3_1:87383680-87383699 Msa0384330:five_prime_UTR 20.0%
!! AATTAAATGCATTATCCATT+TGG + chr3_1:87383800-87383819 None:intergenic 20.0%
! CAAAACCACATAATACAATA+TGG + chr3_1:87379229-87379248 None:intergenic 25.0%
!! AAATTGTTATTGTTATAGCG+AGG + chr3_1:87379388-87379407 None:intergenic 25.0%
!! TTCTTTGATGATATATTTGG+AGG - chr3_1:87379705-87379724 Msa0384330:CDS 25.0%
! TTTGAAAAAGAAGGTGAAAA+AGG + chr3_1:87379863-87379882 None:intergenic 25.0%
! AAGTATAGCATAAAATTGGT+TGG + chr3_1:87379897-87379916 None:intergenic 25.0%
!!! GGTTTTAAAGTGAATTTATG+TGG + chr3_1:87379990-87380009 None:intergenic 25.0%
!! ATTTTACATTCATCGTGTAT+CGG + chr3_1:87380107-87380126 None:intergenic 25.0%
! ATTGCTAAAAGCTAACAAAA+TGG - chr3_1:87380371-87380390 Msa0384330:intron 25.0%
! TGATGTTTAAATAGATTCCA+AGG + chr3_1:87380440-87380459 None:intergenic 25.0%
! ATTACTTCTAATTAAGGTCT+TGG + chr3_1:87380470-87380489 None:intergenic 25.0%
! GGACATATTACTTCTAATTA+AGG + chr3_1:87380476-87380495 None:intergenic 25.0%
! GAAATGGAATTTATCATTAC+TGG + chr3_1:87380975-87380994 None:intergenic 25.0%
! CCCATTTATATATTGAGAAA+TGG + chr3_1:87380991-87381010 None:intergenic 25.0%
! ATATATAAATGGGCAAGTAA+AGG - chr3_1:87380998-87381017 Msa0384330:intron 25.0%
! CATCTTTAATAAGAGTTTGA+CGG + chr3_1:87381342-87381361 None:intergenic 25.0%
! ACTCTTATTAAAGATGTTCT+TGG - chr3_1:87381346-87381365 Msa0384330:CDS 25.0%
! AACAGAGAATGTAATGATTT+GGG + chr3_1:87381478-87381497 None:intergenic 25.0%
! AAATCATTACATTCTCTGTT+CGG - chr3_1:87381478-87381497 Msa0384330:CDS 25.0%
! GTTTACAGTTGTTTAGTTAT+TGG - chr3_1:87382018-87382037 Msa0384330:CDS 25.0%
! AGATTTATTTCAATTCTCAC+AGG - chr3_1:87382046-87382065 Msa0384330:CDS 25.0%
! ATTCTCAACTGTATGAATAT+GGG + chr3_1:87382196-87382215 None:intergenic 25.0%
!! TGAATATGTTCTTAATTTGG+GGG - chr3_1:87382243-87382262 Msa0384330:CDS 25.0%
! TTAGCATAATATGTTTCTCT+TGG - chr3_1:87382345-87382364 Msa0384330:CDS 25.0%
!! ACAGTAAAGAGACATTTTTA+AGG + chr3_1:87382388-87382407 None:intergenic 25.0%
!!! TCTGAAACAATTTTACACAA+AGG - chr3_1:87382452-87382471 Msa0384330:intron 25.0%
!! CTGAAACAATTTTACACAAA+GGG - chr3_1:87382453-87382472 Msa0384330:intron 25.0%
!! TAACCCTTTTTACAAATATC+CGG + chr3_1:87382549-87382568 None:intergenic 25.0%
! TAAATTCAATCAATGATCAG+TGG + chr3_1:87382577-87382596 None:intergenic 25.0%
!! AAACTCTGTAGATATGTTTT+TGG - chr3_1:87382596-87382615 Msa0384330:intron 25.0%
! AAGGTAAAAATTTCAACACT+CGG + chr3_1:87382767-87382786 None:intergenic 25.0%
! CTTTGAATTCTTGAATTTCT+TGG + chr3_1:87382872-87382891 None:intergenic 25.0%
! GATAAAAATGAAACATGTGT+AGG + chr3_1:87382909-87382928 None:intergenic 25.0%
! CGTTTATTACTTACTATTCT+TGG - chr3_1:87383091-87383110 Msa0384330:intron 25.0%
!!! TAACTGAATCTATGGTTTTA+CGG + chr3_1:87383179-87383198 None:intergenic 25.0%
! TAAAACCATAGATTCAGTTA+AGG - chr3_1:87383179-87383198 Msa0384330:intron 25.0%
! AAATTCCTTAACTGAATCTA+TGG + chr3_1:87383187-87383206 None:intergenic 25.0%
! CTCTTGTTGATATAATTGAA+GGG - chr3_1:87383302-87383321 Msa0384330:CDS 25.0%
!! TATTTTACAGGTACTATGTT+TGG - chr3_1:87383435-87383454 Msa0384330:CDS 25.0%
!! ATTTTACAGGTACTATGTTT+GGG - chr3_1:87383436-87383455 Msa0384330:CDS 25.0%
! AAAAAGTTTGTCTCTTTCAT+AGG - chr3_1:87383477-87383496 Msa0384330:CDS 25.0%
! GGAATAAAAATTTCATAGTG+AGG - chr3_1:87383705-87383724 Msa0384330:five_prime_UTR 25.0%
! CTAGAAACATATACCAAAAT+TGG + chr3_1:87383858-87383877 None:intergenic 25.0%
!!! TTGGTATATGTTTCTAGTTT+TGG - chr3_1:87383861-87383880 Msa0384330:five_prime_UTR 25.0%
! ATCATAAAGCTCTATAGTTT+GGG + chr3_1:87383910-87383929 None:intergenic 25.0%
! AATCATAAAGCTCTATAGTT+TGG + chr3_1:87383911-87383930 None:intergenic 25.0%
!! AACTATAGAGCTTTATGATT+TGG - chr3_1:87383911-87383930 Msa0384330:five_prime_UTR 25.0%
!!! CATGAATTGATTTTACCTTT+TGG + chr3_1:87383946-87383965 None:intergenic 25.0%
AAATCTCTCCATTCAAAATC+TGG + chr3_1:87379415-87379434 None:intergenic 30.0%
TATTCTGTTAGGATATGATG+AGG - chr3_1:87379461-87379480 Msa0384330:three_prime_UTR 30.0%
!! TTGATTTTAACGACGTGTTT+GGG - chr3_1:87379529-87379548 Msa0384330:three_prime_UTR 30.0%
!! CCATCATTCCCTTTAAAATA+TGG + chr3_1:87380011-87380030 None:intergenic 30.0%
!! CCATATTTTAAAGGGAATGA+TGG - chr3_1:87380008-87380027 Msa0384330:CDS 30.0%
! ATGATTTTAAGCCAACTTAC+AGG - chr3_1:87380840-87380859 Msa0384330:intron 30.0%
! AATCTTATCTTTTGTCCTTG+AGG + chr3_1:87381062-87381081 None:intergenic 30.0%
AAAATGATAGTCCTAAGGAA+TGG - chr3_1:87381137-87381156 Msa0384330:CDS 30.0%
! TATAGGACTATCATTTTGTG+TGG + chr3_1:87381179-87381198 None:intergenic 30.0%
GATAGTCCTATAACATACAA+TGG - chr3_1:87381187-87381206 Msa0384330:CDS 30.0%
GAAGAACCATTGTATGTTAT+AGG + chr3_1:87381196-87381215 None:intergenic 30.0%
TTCCACAATCAGTAAAAACA+AGG - chr3_1:87381252-87381271 Msa0384330:CDS 30.0%
!!! TACCTTGTTTTTACTGATTG+TGG + chr3_1:87381257-87381276 None:intergenic 30.0%
GCTTTAGCATCATATGTAAT+AGG + chr3_1:87381376-87381395 None:intergenic 30.0%
GAACAGAGAATGTAATGATT+TGG + chr3_1:87381479-87381498 None:intergenic 30.0%
GGTAAAAACAGTAAGAAACA+AGG - chr3_1:87381499-87381518 Msa0384330:CDS 30.0%
TATTCCTATGAATCCAAAGA+AGG - chr3_1:87381669-87381688 Msa0384330:CDS 30.0%
TTTATTTCAATTCTCACAGG+TGG - chr3_1:87382049-87382068 Msa0384330:CDS 30.0%
ATTCTGCTGTGACAAATTAT+TGG + chr3_1:87382135-87382154 None:intergenic 30.0%
AACTGTATGAATATGGGATT+TGG + chr3_1:87382190-87382209 None:intergenic 30.0%
CATTCTCAACTGTATGAATA+TGG + chr3_1:87382197-87382216 None:intergenic 30.0%
CATATTCATACAGTTGAGAA+TGG - chr3_1:87382195-87382214 Msa0384330:CDS 30.0%
! CTTATAATAGTGTCTGAGAT+AGG + chr3_1:87382482-87382501 None:intergenic 30.0%
ATATCAGCAAATGAAATGTC+AGG + chr3_1:87382680-87382699 None:intergenic 30.0%
TTTACCTTTGTGTGTTTATG+TGG - chr3_1:87382779-87382798 Msa0384330:intron 30.0%
TTATCCACATAAACACACAA+AGG + chr3_1:87382786-87382805 None:intergenic 30.0%
CAATCTGCAAATTTCAAATC+AGG + chr3_1:87382812-87382831 None:intergenic 30.0%
! TATATTTCTGTACACCATGT+AGG - chr3_1:87382958-87382977 Msa0384330:intron 30.0%
TTGACAAGAAGATACAACAA+TGG - chr3_1:87382984-87383003 Msa0384330:intron 30.0%
AAGATACAACAATGGTCTAA+AGG - chr3_1:87382992-87383011 Msa0384330:intron 30.0%
TGTTAACAGGCAAGAAAATA+TGG + chr3_1:87383135-87383154 None:intergenic 30.0%
! CATGCTTTATTGTTGTTAAC+AGG + chr3_1:87383148-87383167 None:intergenic 30.0%
! GTTAAGGAATTTTAGATCCT+TGG - chr3_1:87383195-87383214 Msa0384330:intron 30.0%
! AGAACAATTTTGTACTTGGA+TGG + chr3_1:87383223-87383242 None:intergenic 30.0%
! CAAAGTACCTTTATTCATGA+TGG + chr3_1:87383256-87383275 None:intergenic 30.0%
!! CATCATGAATAAAGGTACTT+TGG - chr3_1:87383254-87383273 Msa0384330:CDS 30.0%
CCTTCAATTATATCAACAAG+AGG + chr3_1:87383304-87383323 None:intergenic 30.0%
CCTCTTGTTGATATAATTGA+AGG - chr3_1:87383301-87383320 Msa0384330:CDS 30.0%
! TCTAGAATCTTGCTTGAAAT+TGG - chr3_1:87383505-87383524 Msa0384330:CDS 30.0%
!! TACTGGTAAAAGTTTTATGC+TGG - chr3_1:87383598-87383617 Msa0384330:CDS 30.0%
! TTCAGTGCATGGTATTTTAT+TGG + chr3_1:87383634-87383653 None:intergenic 30.0%
! TACAAAGCTTTTTATCTGGT+AGG - chr3_1:87383684-87383703 Msa0384330:five_prime_UTR 30.0%
! TGTTTAGCTATTGCCAATTT+TGG - chr3_1:87383842-87383861 Msa0384330:five_prime_UTR 30.0%
!! ATTGATTTTACCTTTTGGAC+TGG + chr3_1:87383941-87383960 None:intergenic 30.0%
TGAATTGTCACAGACAAAAG+AGG + chr3_1:87379292-87379311 None:intergenic 35.0%
GTTATTGTTATAGCGAGGAA+TGG + chr3_1:87379383-87379402 None:intergenic 35.0%
AGTTATTCTGAACAACGAGA+TGG - chr3_1:87379438-87379457 Msa0384330:three_prime_UTR 35.0%
!! GTTGATTTTAACGACGTGTT+TGG - chr3_1:87379528-87379547 Msa0384330:three_prime_UTR 35.0%
!! TGATTTTAACGACGTGTTTG+GGG - chr3_1:87379530-87379549 Msa0384330:three_prime_UTR 35.0%
AAAAGGAAAACCTGAAGGAT+GGG + chr3_1:87379833-87379852 None:intergenic 35.0%
AAAGGAAAAGGAAAACCTGA+AGG + chr3_1:87379838-87379857 None:intergenic 35.0%
GTGAAAAAGGTGAAAGGAAA+AGG + chr3_1:87379850-87379869 None:intergenic 35.0%
AAGAAGGTGAAAAAGGTGAA+AGG + chr3_1:87379856-87379875 None:intergenic 35.0%
CAATGTATGTCTAGCACAAT+TGG - chr3_1:87380168-87380187 Msa0384330:CDS 35.0%
CTAAGAAGGTGAGAATACAA+GGG + chr3_1:87380244-87380263 None:intergenic 35.0%
CTTGTATTCTCACCTTCTTA+GGG - chr3_1:87380243-87380262 Msa0384330:intron 35.0%
ATACACAAAGTTCCCTAAGA+AGG + chr3_1:87380258-87380277 None:intergenic 35.0%
AAGCTAACAAAATGGCAATG+TGG - chr3_1:87380379-87380398 Msa0384330:intron 35.0%
TTCTGTCAATGTGCATATGA+TGG + chr3_1:87380410-87380429 None:intergenic 35.0%
ATCATATGCACATTGACAGA+AGG - chr3_1:87380409-87380428 Msa0384330:intron 35.0%
! ATTGACAGAAGGATTTTCCT+TGG - chr3_1:87380420-87380439 Msa0384330:intron 35.0%
TCTAATTAAGGTCTTGGCAT+TGG + chr3_1:87380464-87380483 None:intergenic 35.0%
AGTACGAATCCACTTAACAA+CGG - chr3_1:87380740-87380759 Msa0384330:intron 35.0%
AATAGACTTTGCCTGTAAGT+TGG + chr3_1:87380854-87380873 None:intergenic 35.0%
! CTTAGGACTATCATTTTGAG+TGG + chr3_1:87381134-87381153 None:intergenic 35.0%
CACTCAAAATGATAGTCCTA+AGG - chr3_1:87381132-87381151 Msa0384330:CDS 35.0%
AAATGATATGGTCTACACTC+TGG + chr3_1:87381288-87381307 None:intergenic 35.0%
ACAAATGAGATAGTCTCTGA+TGG - chr3_1:87381415-87381434 Msa0384330:CDS 35.0%
AAACAAGGTAAAGCTGTCTT+TGG - chr3_1:87381514-87381533 Msa0384330:CDS 35.0%
TCTTTCTATCTTTGTGTGTG+AGG - chr3_1:87381543-87381562 Msa0384330:CDS 35.0%
TCTTCCTTCTTTGGATTCAT+AGG + chr3_1:87381676-87381695 None:intergenic 35.0%
! TGCTTTTCATCTTCCTTCTT+TGG + chr3_1:87381685-87381704 None:intergenic 35.0%
! CAAAAGACAGATTCTAAGAG+AGG - chr3_1:87381703-87381722 Msa0384330:CDS 35.0%
GGTTATAAGTACAAGCAGAA+AGG - chr3_1:87381880-87381899 Msa0384330:CDS 35.0%
AATTTGAATACGCTCGAATG+AGG - chr3_1:87381978-87381997 Msa0384330:CDS 35.0%
ATTATTGGCAGCCATATCAA+TGG + chr3_1:87382120-87382139 None:intergenic 35.0%
GCTGATATCCAAGATATAGA+TGG - chr3_1:87382410-87382429 Msa0384330:intron 35.0%
! ATAATAGTGTCTGAGATAGG+TGG + chr3_1:87382479-87382498 None:intergenic 35.0%
TGGCCGGATATTTGTAAAAA+GGG - chr3_1:87382543-87382562 Msa0384330:intron 35.0%
ACAACAATGGTCTAAAGGAA+AGG - chr3_1:87382997-87383016 Msa0384330:intron 35.0%
ATGGCTTCCATCATGAATAA+AGG - chr3_1:87383246-87383265 Msa0384330:CDS 35.0%
! ATTATATCAACAAGAGGCAC+AGG + chr3_1:87383298-87383317 None:intergenic 35.0%
TGATATAATTGAAGGGAACG+CGG - chr3_1:87383309-87383328 Msa0384330:CDS 35.0%
! CTTTTTCTGCAGTGTACTTT+TGG + chr3_1:87383408-87383427 None:intergenic 35.0%
GTAAGAATGTAAGGAACTAC+TGG - chr3_1:87383581-87383600 Msa0384330:CDS 35.0%
! CATTATCCATTTGGAACAAG+TGG + chr3_1:87383791-87383810 None:intergenic 35.0%
! ATAGTTTGGGTTACAAGCTA+AGG + chr3_1:87383897-87383916 None:intergenic 35.0%
! ATTTCCCGCCAGATTTTGAA+TGG - chr3_1:87379404-87379423 Msa0384330:three_prime_UTR 40.0%
TCTCTCCATTCAAAATCTGG+CGG + chr3_1:87379412-87379431 None:intergenic 40.0%
CAACGAGATGGTATTCTGTT+AGG - chr3_1:87379450-87379469 Msa0384330:three_prime_UTR 40.0%
!! GATTTTAACGACGTGTTTGG+GGG - chr3_1:87379531-87379550 Msa0384330:three_prime_UTR 40.0%
GAGGTCATCGGTAAATTCAT+CGG - chr3_1:87379566-87379585 Msa0384330:CDS 40.0%
AAAGGAAAACCTGAAGGATG+GGG + chr3_1:87379832-87379851 None:intergenic 40.0%
GAAAAGGAAAACCTGAAGGA+TGG + chr3_1:87379834-87379853 None:intergenic 40.0%
GTATGTCTAGCACAATTGGT+CGG - chr3_1:87380172-87380191 Msa0384330:CDS 40.0%
CCTAAGAAGGTGAGAATACA+AGG + chr3_1:87380245-87380264 None:intergenic 40.0%
CCTTGTATTCTCACCTTCTT+AGG - chr3_1:87380242-87380261 Msa0384330:intron 40.0%
CAAGAGACTATGATCACATC+AGG + chr3_1:87380568-87380587 None:intergenic 40.0%
TTGGAAGGAGTAAACATCAG+AGG + chr3_1:87380648-87380667 None:intergenic 40.0%
! TTAAGTGGATTCGTACTCCT+GGG + chr3_1:87380737-87380756 None:intergenic 40.0%
CAGGCAAAGTCTATTATCGA+AGG - chr3_1:87380859-87380878 Msa0384330:intron 40.0%
CTTTGTCTACTTCATCAGAC+TGG + chr3_1:87380901-87380920 None:intergenic 40.0%
CAGTCTGATGAAGTAGACAA+AGG - chr3_1:87380899-87380918 Msa0384330:CDS 40.0%
TAAATGGGCAAGTAAAGGTG+TGG - chr3_1:87381003-87381022 Msa0384330:intron 40.0%
GAGGTTCTTTCTGTCCTAAA+AGG + chr3_1:87381043-87381062 None:intergenic 40.0%
TTAGGACAGAAAGAACCTCA+AGG - chr3_1:87381044-87381063 Msa0384330:intron 40.0%
TATTGACAGTTATCACAGCG+TGG + chr3_1:87381573-87381592 None:intergenic 40.0%
AAAGTCGAGAGAAGCAAACA+TGG - chr3_1:87381624-87381643 Msa0384330:CDS 40.0%
CTTTGACCTTCCCTTTAACT+CGG + chr3_1:87381792-87381811 None:intergenic 40.0%
! CGAGATTTTGTGTCGAGTTT+GGG + chr3_1:87381853-87381872 None:intergenic 40.0%
! TCGAGATTTTGTGTCGAGTT+TGG + chr3_1:87381854-87381873 None:intergenic 40.0%
GACACAAAATCTCGACTTCA+GGG - chr3_1:87381859-87381878 Msa0384330:CDS 40.0%
TACGGTATAGATCTCCTTCT+TGG + chr3_1:87382093-87382112 None:intergenic 40.0%
TACCGTAGAGACCATTGATA+TGG - chr3_1:87382106-87382125 Msa0384330:CDS 40.0%
AGCCATATCAATGGTCTCTA+CGG + chr3_1:87382111-87382130 None:intergenic 40.0%
CAGAATGATATCTCAGCATC+AGG - chr3_1:87382149-87382168 Msa0384330:CDS 40.0%
CGACACTACCATCTATATCT+TGG + chr3_1:87382421-87382440 None:intergenic 40.0%
CCACATGGATGTGGTAATTA+AGG + chr3_1:87382526-87382545 None:intergenic 40.0%
CCTTAATTACCACATCCATG+TGG - chr3_1:87382523-87382542 Msa0384330:intron 40.0%
TTTACAAATATCCGGCCACA+TGG + chr3_1:87382541-87382560 None:intergenic 40.0%
GTGGCCGGATATTTGTAAAA+AGG - chr3_1:87382542-87382561 Msa0384330:intron 40.0%
GTCCTTCCATGAGAATTTCA+CGG - chr3_1:87382715-87382734 Msa0384330:intron 40.0%
TACCGTGAAATTCTCATGGA+AGG + chr3_1:87382720-87382739 None:intergenic 40.0%
GGAATACCGTGAAATTCTCA+TGG + chr3_1:87382724-87382743 None:intergenic 40.0%
! TGAAGTATTATCCCAAGACG+AGG - chr3_1:87382830-87382849 Msa0384330:intron 40.0%
CTTCTTGTCAATGACCTACA+TGG + chr3_1:87382975-87382994 None:intergenic 40.0%
CAATGGTCTAAAGGAAAGGA+AGG - chr3_1:87383001-87383020 Msa0384330:intron 40.0%
TTTGTACTTGGATGGAACCA+AGG + chr3_1:87383215-87383234 None:intergenic 40.0%
! AAGGTACTTTGGCCAAATTG+TGG - chr3_1:87383265-87383284 Msa0384330:CDS 40.0%
TCCAGATAAGTTGCAGCAAA+AGG - chr3_1:87383369-87383388 Msa0384330:CDS 40.0%
CCAGATAAGTTGCAGCAAAA+GGG - chr3_1:87383370-87383389 Msa0384330:CDS 40.0%
! ATTTGGTAGTCCAGTCCAAA+AGG - chr3_1:87383928-87383947 Msa0384330:five_prime_UTR 40.0%
GAAAAAGACAGAAGCCAGAG+AGG - chr3_1:87379111-87379130 Msa0384330:three_prime_UTR 45.0%
AGACAAAAGAGGACAGGGTT+AGG + chr3_1:87379281-87379300 None:intergenic 45.0%
GTCACAGACAAAAGAGGACA+GGG + chr3_1:87379286-87379305 None:intergenic 45.0%
TGTCACAGACAAAAGAGGAC+AGG + chr3_1:87379287-87379306 None:intergenic 45.0%
GAATGGAACAGAACACAGAG+AGG + chr3_1:87379366-87379385 None:intergenic 45.0%
CTCTCCATTCAAAATCTGGC+GGG + chr3_1:87379411-87379430 None:intergenic 45.0%
GGATATGATGAGGATGAGAG+TGG - chr3_1:87379471-87379490 Msa0384330:three_prime_UTR 45.0%
TCGGTAAATTCATCGGTGAG+TGG - chr3_1:87379573-87379592 Msa0384330:CDS 45.0%
GTAAATTCATCGGTGAGTGG+AGG - chr3_1:87379576-87379595 Msa0384330:CDS 45.0%
TCCACTATCCTCACCAAACA+CGG + chr3_1:87379658-87379677 None:intergenic 45.0%
!! TTGGTGAGGATAGTGGAGTT+AGG - chr3_1:87379661-87379680 Msa0384330:CDS 45.0%
GGAGTTAGGAGGAGAAGAAA+AGG - chr3_1:87379675-87379694 Msa0384330:CDS 45.0%
TCACAGTCTCAAACTCCAAG+TGG - chr3_1:87379735-87379754 Msa0384330:CDS 45.0%
CACAGTCTCAAACTCCAAGT+GGG - chr3_1:87379736-87379755 Msa0384330:CDS 45.0%
!! TTTGGTGTTGAACACCCACT+TGG + chr3_1:87379753-87379772 None:intergenic 45.0%
AAGGAAAACCTGAAGGATGG+GGG + chr3_1:87379831-87379850 None:intergenic 45.0%
GCTGATCAGTCGAATTTGGA+AGG + chr3_1:87380663-87380682 None:intergenic 45.0%
GAAGGCTGATCAGTCGAATT+TGG + chr3_1:87380667-87380686 None:intergenic 45.0%
CATTTGCCAATATGGCAGGA+AGG + chr3_1:87380685-87380704 None:intergenic 45.0%
CTTCCTGCCATATTGGCAAA+TGG - chr3_1:87380683-87380702 Msa0384330:intron 45.0%
TGCCATATTGGCAAATGGAG+CGG - chr3_1:87380688-87380707 Msa0384330:intron 45.0%
! GTTAAGTGGATTCGTACTCC+TGG + chr3_1:87380738-87380757 None:intergenic 45.0%
! AACGGCATTGCTGCTTCAAA+TGG - chr3_1:87380758-87380777 Msa0384330:intron 45.0%
! AAGTAAAGGTGTGGTGCCTT+TGG - chr3_1:87381012-87381031 Msa0384330:intron 45.0%
GTCAGTGACAATCCATTCCT+TGG + chr3_1:87381107-87381126 None:intergenic 45.0%
TCACTGACGATCCATTCCTT+AGG + chr3_1:87381151-87381170 None:intergenic 45.0%
! GAGCTTTGGCGGAAATGATA+TGG + chr3_1:87381300-87381319 None:intergenic 45.0%
! TGAATCTGGTTGAGCTTTGG+CGG + chr3_1:87381311-87381330 None:intergenic 45.0%
CGATGAATCTGGTTGAGCTT+TGG + chr3_1:87381314-87381333 None:intergenic 45.0%
GTTTGCTTCTCTCGACTTTC+TGG + chr3_1:87381623-87381642 None:intergenic 45.0%
ATTAAGCCCAGGCAGAAGTA+TGG - chr3_1:87381759-87381778 Msa0384330:CDS 45.0%
! TTAAGCCCAGGCAGAAGTAT+GGG - chr3_1:87381760-87381779 Msa0384330:CDS 45.0%
! CTTTTCCCATACTTCTGCCT+GGG + chr3_1:87381768-87381787 None:intergenic 45.0%
ATGGGAAAAGGCCGAGTTAA+AGG - chr3_1:87381778-87381797 Msa0384330:CDS 45.0%
TGGGAAAAGGCCGAGTTAAA+GGG - chr3_1:87381779-87381798 Msa0384330:CDS 45.0%
AAAAGGCCGAGTTAAAGGGA+AGG - chr3_1:87381783-87381802 Msa0384330:CDS 45.0%
CGACACAAAATCTCGACTTC+AGG - chr3_1:87381858-87381877 Msa0384330:CDS 45.0%
ACAAGCAGAAAGGAGCTGTA+AGG - chr3_1:87381890-87381909 Msa0384330:CDS 45.0%
CAAGCAGAAAGGAGCTGTAA+GGG - chr3_1:87381891-87381910 Msa0384330:CDS 45.0%
TGATCCTGAACAGTCCAAGA+AGG - chr3_1:87382076-87382095 Msa0384330:CDS 45.0%
ATCTCCTTCTTGGACTGTTC+AGG + chr3_1:87382083-87382102 None:intergenic 45.0%
AATTACCACATCCATGTGGC+CGG - chr3_1:87382527-87382546 Msa0384330:intron 45.0%
TACTTTGGCCAAATTGTGGC+TGG - chr3_1:87383269-87383288 Msa0384330:CDS 45.0%
! CCCTTTTGCTGCAACTTATC+TGG + chr3_1:87383373-87383392 None:intergenic 45.0%
! GGTCTGTGCAATTCAAGTTC+AGG + chr3_1:87383770-87383789 None:intergenic 45.0%
CACAGACCACTTGTTCCAAA+TGG - chr3_1:87383782-87383801 Msa0384330:five_prime_UTR 45.0%
AGCCAGAGAGGTAGAATGAG+AGG - chr3_1:87379123-87379142 Msa0384330:three_prime_UTR 50.0%
AGCCTCTCATTCTACCTCTC+TGG + chr3_1:87379128-87379147 None:intergenic 50.0%
AGAGGTAGAATGAGAGGCTG+TGG - chr3_1:87379129-87379148 Msa0384330:three_prime_UTR 50.0%
ACAGGGTTAGGTAGTAGCAC+TGG + chr3_1:87379269-87379288 None:intergenic 50.0%
GATTTCCTCTGTGACGTGCT+CGG + chr3_1:87379504-87379523 None:intergenic 50.0%
TGGAGGAGAGGAAGGTGAAA+CGG - chr3_1:87379593-87379612 Msa0384330:CDS 50.0%
!! GTGAAACGGGTTGGTGTAGT+TGG - chr3_1:87379607-87379626 Msa0384330:CDS 50.0%
CCACTATCCTCACCAAACAC+GGG + chr3_1:87379657-87379676 None:intergenic 50.0%
!! GTGAGGATAGTGGAGTTAGG+AGG - chr3_1:87379664-87379683 Msa0384330:CDS 50.0%
GAAGCAAGTGGTTGAAGAGC+AGG + chr3_1:87379801-87379820 None:intergenic 50.0%
AGGAAAACCTGAAGGATGGG+GGG + chr3_1:87379830-87379849 None:intergenic 50.0%
ACAATTGGTCGGTGCGCAAT+GGG - chr3_1:87380183-87380202 Msa0384330:CDS 50.0%
GATCAGCCTTCCTGCCATAT+TGG - chr3_1:87380676-87380695 Msa0384330:intron 50.0%
GCTCCATTTGCCAATATGGC+AGG + chr3_1:87380689-87380708 None:intergenic 50.0%
GTCCGCTCCATTTGCCAATA+TGG + chr3_1:87380693-87380712 None:intergenic 50.0%
GAGGGGAACCAAATGTCTGA+AGG + chr3_1:87380715-87380734 None:intergenic 50.0%
GCAGCAATGCCGTTGTTAAG+TGG + chr3_1:87380752-87380771 None:intergenic 50.0%
! TGCCTTTGGCGATGCCTTTT+AGG - chr3_1:87381026-87381045 Msa0384330:intron 50.0%
!! GTCCTAAAAGGCATCGCCAA+AGG + chr3_1:87381031-87381050 None:intergenic 50.0%
TATAGCAAAGCTACTCCCCG+AGG - chr3_1:87381733-87381752 Msa0384330:CDS 50.0%
TGCCTGGGCTTAATGAACCT+CGG + chr3_1:87381753-87381772 None:intergenic 50.0%
! CCTTTTCCCATACTTCTGCC+TGG + chr3_1:87381769-87381788 None:intergenic 50.0%
! CCAGGCAGAAGTATGGGAAA+AGG - chr3_1:87381766-87381785 Msa0384330:CDS 50.0%
TGGACTAACTTGAGCAGCTG+TGG - chr3_1:87382215-87382234 Msa0384330:CDS 50.0%
AATATCCGGCCACATGGATG+TGG + chr3_1:87382535-87382554 None:intergenic 50.0%
TGAGACGTCATCCTCGTCTT+GGG + chr3_1:87382844-87382863 None:intergenic 50.0%
ACAGGCTTCCAGCCACAATT+TGG + chr3_1:87383280-87383299 None:intergenic 50.0%
ACAATCCGAGCACGTCACAG+AGG - chr3_1:87379496-87379515 Msa0384330:three_prime_UTR 55.0%
TTTACCGATGACCTCCTCCG+CGG + chr3_1:87379561-87379580 None:intergenic 55.0%
TTCATCGGTGAGTGGAGGAG+AGG - chr3_1:87379581-87379600 Msa0384330:CDS 55.0%
GGAGGAGAGGAAGGTGAAAC+GGG - chr3_1:87379594-87379613 Msa0384330:CDS 55.0%
GAGAGGAAGGTGAAACGGGT+TGG - chr3_1:87379598-87379617 Msa0384330:CDS 55.0%
AACACGGGTTTCTCGCTCTC+CGG + chr3_1:87379642-87379661 None:intergenic 55.0%
GAGAGCGAGAAACCCGTGTT+TGG - chr3_1:87379642-87379661 Msa0384330:CDS 55.0%
! CGAGAAACCCGTGTTTGGTG+AGG - chr3_1:87379647-87379666 Msa0384330:CDS 55.0%
! CCCGTGTTTGGTGAGGATAG+TGG - chr3_1:87379654-87379673 Msa0384330:CDS 55.0%
GCAGCAGCATCACGTCTCTT+TGG + chr3_1:87379771-87379790 None:intergenic 55.0%
CACAATTGGTCGGTGCGCAA+TGG - chr3_1:87380182-87380201 Msa0384330:CDS 55.0%
GGAGCGGACCTTCAGACATT+TGG - chr3_1:87380704-87380723 Msa0384330:intron 55.0%
! AGACATTTGGTTCCCCTCCC+AGG - chr3_1:87380717-87380736 Msa0384330:intron 55.0%
TGGATTCGTACTCCTGGGAG+GGG + chr3_1:87380732-87380751 None:intergenic 55.0%
GTGGATTCGTACTCCTGGGA+GGG + chr3_1:87380733-87380752 None:intergenic 55.0%
! AGTGGATTCGTACTCCTGGG+AGG + chr3_1:87380734-87380753 None:intergenic 55.0%
TGAGAAATGCTCGAGCGCCA+AGG - chr3_1:87381087-87381106 Msa0384330:intron 55.0%
AATGCTCGAGCGCCAAGGAA+TGG - chr3_1:87381092-87381111 Msa0384330:intron 55.0%
TGACGGCTGCTCGATGAATC+TGG + chr3_1:87381325-87381344 None:intergenic 55.0%
CCTGGGCTTAATGAACCTCG+GGG + chr3_1:87381751-87381770 None:intergenic 55.0%
GCCTGGGCTTAATGAACCTC+GGG + chr3_1:87381752-87381771 None:intergenic 55.0%
GTGAGACGTCATCCTCGTCT+TGG + chr3_1:87382845-87382864 None:intergenic 55.0%
GCGCGACTAGATTCAGTGCA+TGG + chr3_1:87383645-87383664 None:intergenic 55.0%
TCGGTGAGTGGAGGAGAGGA+AGG - chr3_1:87379585-87379604 Msa0384330:CDS 60.0%
! GTGTAGTTGGCCTCCTCCAC+CGG - chr3_1:87379620-87379639 Msa0384330:CDS 60.0%
GGGGGGAGAGAAGAAGCAAG+TGG + chr3_1:87379813-87379832 None:intergenic 60.0%
CTTCTCTCCCCCCATCCTTC+AGG - chr3_1:87379820-87379839 Msa0384330:intron 60.0%
CCCCGAGGTTCATTAAGCCC+AGG - chr3_1:87381748-87381767 Msa0384330:CDS 60.0%
ACGTGTTTGGGGGACCACCG+CGG - chr3_1:87379541-87379560 Msa0384330:exon 65.0%
ACCACCGCGGAGGAGGTCAT+CGG - chr3_1:87379554-87379573 Msa0384330:exon 65.0%
TTCTCGCTCTCCGGTGGAGG+AGG + chr3_1:87379633-87379652 None:intergenic 65.0%
GGTTTCTCGCTCTCCGGTGG+AGG + chr3_1:87379636-87379655 None:intergenic 65.0%
ACGGGTTTCTCGCTCTCCGG+TGG + chr3_1:87379639-87379658 None:intergenic 65.0%
TGTTTGGGGGACCACCGCGG+AGG - chr3_1:87379544-87379563 Msa0384330:exon 70.0%
ACCGATGACCTCCTCCGCGG+TGG + chr3_1:87379558-87379577 None:intergenic 70.0%
TTGGGGGACCACCGCGGAGG+AGG - chr3_1:87379547-87379566 Msa0384330:exon 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 87379085 87383970 87379085 ID=Msa0384330;Name=Msa0384330
chr3_1 mRNA 87379085 87383970 87379085 ID=Msa0384330-mRNA-1;Parent=Msa0384330;Name=Msa0384330-mRNA-1;_AED=0.17;_eAED=0.17;_QI=338|0.83|0.85|1|1|1|7|472|740
chr3_1 exon 87379085 87379787 87379085 ID=Msa0384330-mRNA-1:exon:23371;Parent=Msa0384330-mRNA-1
chr3_1 exon 87379998 87380075 87379998 ID=Msa0384330-mRNA-1:exon:23370;Parent=Msa0384330-mRNA-1
chr3_1 exon 87380165 87380227 87380165 ID=Msa0384330-mRNA-1:exon:23369;Parent=Msa0384330-mRNA-1
chr3_1 exon 87380319 87380383 87380319 ID=Msa0384330-mRNA-1:exon:23368;Parent=Msa0384330-mRNA-1
chr3_1 exon 87380885 87380987 87380885 ID=Msa0384330-mRNA-1:exon:23367;Parent=Msa0384330-mRNA-1
chr3_1 exon 87381110 87382373 87381110 ID=Msa0384330-mRNA-1:exon:23366;Parent=Msa0384330-mRNA-1
chr3_1 exon 87383214 87383970 87383214 ID=Msa0384330-mRNA-1:exon:23365;Parent=Msa0384330-mRNA-1
chr3_1 five_prime_UTR 87383633 87383970 87383633 ID=Msa0384330-mRNA-1:five_prime_utr;Parent=Msa0384330-mRNA-1
chr3_1 CDS 87383214 87383632 87383214 ID=Msa0384330-mRNA-1:cds;Parent=Msa0384330-mRNA-1
chr3_1 CDS 87381110 87382373 87381110 ID=Msa0384330-mRNA-1:cds;Parent=Msa0384330-mRNA-1
chr3_1 CDS 87380885 87380987 87380885 ID=Msa0384330-mRNA-1:cds;Parent=Msa0384330-mRNA-1
chr3_1 CDS 87380319 87380383 87380319 ID=Msa0384330-mRNA-1:cds;Parent=Msa0384330-mRNA-1
chr3_1 CDS 87380165 87380227 87380165 ID=Msa0384330-mRNA-1:cds;Parent=Msa0384330-mRNA-1
chr3_1 CDS 87379998 87380075 87379998 ID=Msa0384330-mRNA-1:cds;Parent=Msa0384330-mRNA-1
chr3_1 CDS 87379557 87379787 87379557 ID=Msa0384330-mRNA-1:cds;Parent=Msa0384330-mRNA-1
chr3_1 three_prime_UTR 87379085 87379556 87379085 ID=Msa0384330-mRNA-1:three_prime_utr;Parent=Msa0384330-mRNA-1
Gene Sequence

>Msa0384330

ATGGAGAGATTTTATAGTTATTCTGAACAACGAGATGGTATTCTGTTAGGATATGATGAGGATGAGAGTGGTAACAATCCGAGCACGTCACAGAGGAAATCAGACGTTGATTTTAACGACGTGTTTGGGGGACCACCGCGGAGGAGGTCATCGGTAAATTCATCGGTGAGTGGAGGAGAGGAAGGTGAAACGGGTTGGTGTAGTTGGCCTCCTCCACCGGAGAGCGAGAAACCCGTGTTTGGTGAGGATAGTGGAGTTAGGAGGAGAAGAAAAGGAAAAGATTTCTTTGATGATATATTTGGAGGAGAAGAGTCACAGTCTCAAACTCCAAGTGGGTGTTCAACACCAAAGAGACGTGATGCTGCTGCTTTCAGTCCTGCTCTTCAACCACTTGCTTCTTCTCTCCCCCCATCCTTCAGCCTTCCTGCCATATTGGCAAATGGAGCGGACCTTCAGACATTTGGTTCCCCTCCCAGGAGTACGAATCCACTTAACAACGGCATTGCTGCTTCAAATGGATTAGACTTCTCAGACTCTCATCTATCTAGATTTTCAGCTCAACATAAAGACTTGCAAAATGATTTTAAGCCAACTTACAGGCAAAGTCTATTATCGAAGGAGTTTTCAAACTTGAGCCAGTCTGATGAAGTAGACAAAGGAAACAATTTGAAACAAGACAGATCTATTACTGAAGTTTCTCCTAATAATACCAGTAATGATAAATTCCATTTCTCAATATATAAATGGGCAAGTAAAGGTGTGGTGCCTTTGGCGATGCCTTTTAGGACAGAAAGAACCTCAAGGACAAAAGATAAGATTAAACTTGAGAAATGCTCGAGCGCCAAGGAATGGATTGTCACTGACATTACCACTCAAAATGATAGTCCTAAGGAATGGATCGTCAGTGAGATTACCACACAAAATGATAGTCCTATAACATACAATGGTTCTTCTTTAAAGAGTAATAAAAAACAAGAGGTGTCAAATACTTCCACAATCAGTAAAAACAAGGTAGATTCACACCAGAGTGTAGACCATATCATTTCCGCCAAAGCTCAACCAGATTCATCGAGCAGCCGTCAAACTCTTATTAAAGATGTTCTTGGTAGTCCTATTACATATGATGCTAAAGCAGAATCAAGTACTCATTCTACAAATGAGATAGTCTCTGATGGAAAAACTGAAGCAGCAAGTGAAACTCACAAACATGAGCCCAAATCATTACATTCTCTGTTCGGTAAAAACAGTAAGAAACAAGGTAAAGCTGTCTTTGGCATTCTTCTTTCTATCTTTGTGTGTGAGGTTTACCACGCTGTGATAACTGTCAATAGTTTTATGTCAGATTATGATAAGATAACCAGAAAGTCGAGAGAAGCAAACATGGCGAAAAGCTCAAATAGTTTTGATATTCCTATGAATCCAAAGAAGGAAGATGAAAAGCAAAAGACAGATTCTAAGAGAGGTGTAGAATATAGCAAAGCTACTCCCCGAGGTTCATTAAGCCCAGGCAGAAGTATGGGAAAAGGCCGAGTTAAAGGGAAGGTCAAAGAATTTGCTCAAATATTCAATCAAGAAGCTGTAACAAAACCCAAACTCGACACAAAATCTCGACTTCAGGGTTATAAGTACAAGCAGAAAGGAGCTGTAAGGGTAAATAACGATGTAAGTGCTGTCGCAGCTGAAGTGGATGATGATCCTGAACAGTCCAAGAAGGAGATCTATACCGTAGAGACCATTGATATGGCTGCCAATAATTTGTCACAGCAGAATGATATCTCAGCATCAGCAATTCCTGACATTTCATTTGCTGATATTGAAGATAAAGACGAGTCCTTCCATGAGAATTTCACGATTGAAGTATTATCCCAAGACGAGGATGACGTCTCACAGAACCAAGAAATTCAAGAATTCAAAGTCATTGACAAGAAGATACAACAATGGTCTAAAGGAAAGGAAGGAAACATACGCTCACTGCTGTCAACATTACAATACGTACTTTGGCCAAATTGTGGCTGGAAGCCTGTGCCTCTTGTTGATATAATTGAAGGGAACGCGGTTAAAAGATCTTATCAAAGAGCTTTACTCAGTCTGCATCCAGATAAGTTGCAGCAAAAGGGTGCTACTTCAGACCAAAAGTACACTGCAGAAAAAGTTTTTGATATTTTACAGGTACTATGTTTGGGTCAATTTATTAGCATTACAAAAAGTTTGTCTCTTTCATAG
Protein sequence

>Msa0384330

MERFYSYSEQRDGILLGYDEDESGNNPSTSQRKSDVDFNDVFGGPPRRRSSVNSSVSGGEEGETGWCSWPPPPESEKPVFGEDSGVRRRRKGKDFFDDIFGGEESQSQTPSGCSTPKRRDAAAFSPALQPLASSLPPSFSLPAILANGADLQTFGSPPRSTNPLNNGIAASNGLDFSDSHLSRFSAQHKDLQNDFKPTYRQSLLSKEFSNLSQSDEVDKGNNLKQDRSITEVSPNNTSNDKFHFSIYKWASKGVVPLAMPFRTERTSRTKDKIKLEKCSSAKEWIVTDITTQNDSPKEWIVSEITTQNDSPITYNGSSLKSNKKQEVSNTSTISKNKVDSHQSVDHIISAKAQPDSSSSRQTLIKDVLGSPITYDAKAESSTHSTNEIVSDGKTEAASETHKHEPKSLHSLFGKNSKKQGKAVFGILLSIFVCEVYHAVITVNSFMSDYDKITRKSREANMAKSSNSFDIPMNPKKEDEKQKTDSKRGVEYSKATPRGSLSPGRSMGKGRVKGKVKEFAQIFNQEAVTKPKLDTKSRLQGYKYKQKGAVRVNNDVSAVAAEVDDDPEQSKKEIYTVETIDMAANNLSQQNDISASAIPDISFADIEDKDESFHENFTIEVLSQDEDDVSQNQEIQEFKVIDKKIQQWSKGKEGNIRSLLSTLQYVLWPNCGWKPVPLVDIIEGNAVKRSYQRALLSLHPDKLQQKGATSDQKYTAEKVFDILQVLCLGQFISITKSLSLS*