AlfalfaGEDB | Msa1312900

M. sativa cultivar zhongmu-4 / Msa1312900

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0105070	Msa1312900	0.801830	7.482875e-49	-8.615850e-47
Msa0455760	Msa1312900	0.806699	7.247490e-50	-8.615850e-47
Msa0766630	Msa1312900	0.804997	1.651159e-49	-8.615850e-47
Msa0925250	Msa1312900	0.827060	1.927280e-54	-8.615850e-47
Msa0925270	Msa1312900	0.817445	3.285153e-52	-8.615850e-47
Msa0925290	Msa1312900	0.801296	9.626443e-49	-8.615850e-47
Msa0994030	Msa1312900	0.803201	3.903540e-49	-8.615850e-47
Msa1036610	Msa1312900	0.802249	6.136824e-49	-8.615850e-47
Msa1312900	Msa1312950	0.806625	7.510609e-50	-8.615850e-47
Msa1312900	Msa1403480	0.835465	1.651543e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 64 sgRNAs with CRISPR-Local

Find 544 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTTTGGTGTTGCTAC+TGG	0.466168	8_4:+10309785	None:intergenic
AAGTAAAATCCAAAGAAGGA+AGG	0.553984	8_4:-10309343	Msa1312900:five_prime_UTR
AATCGGAGTGAGTAGAATCA+AGG	0.573532	8_4:-10309453	Msa1312900:five_prime_UTR
AATTCTGGTGGTGATAACAC+TGG	0.692964	8_4:+10306495	None:intergenic
ACAACAGTCACTGAAGCACG+TGG	0.717050	8_4:-10309543	Msa1312900:five_prime_UTR
AGAAGAAGAAATGCGGGAAT+CGG	0.508694	8_4:-10309470	Msa1312900:five_prime_UTR
AGATGTGTGTTCATGATTTC+TGG	0.189289	8_4:+10309832	None:intergenic
AGGGATGAGTTGTCTACTTT+TGG	0.272750	8_4:-10306542	Msa1312900:exon
AGTAAAATCCAAAGAAGGAA+GGG	0.583696	8_4:-10309342	Msa1312900:intron
ATAGAAGAAAAGGAAGCAAA+AGG	0.506231	8_4:-10309514	Msa1312900:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAATGAATTGGGAAGAAA+TGG	+	chr8_4:10300220-10300239	None:intergenic	30.0%
TGAGTGTTCTTCAATGAATT+GGG	+	chr8_4:10300229-10300248	None:intergenic	30.0%
ATGAGTGTTCTTCAATGAAT+TGG	+	chr8_4:10300230-10300249	None:intergenic	30.0%
TGATGATAGATTATGTGATG+AGG	+	chr8_4:10300436-10300455	None:intergenic	30.0%
ATAGAAGAAAAGGAAGCAAA+AGG	-	chr8_4:10300580-10300599	Msa1312900:intron	30.0%
TTCGAAGTAAAATCCAAAGA+AGG	-	chr8_4:10300747-10300766	Msa1312900:intron	30.0%
AAGTAAAATCCAAAGAAGGA+AGG	-	chr8_4:10300751-10300770	Msa1312900:intron	30.0%
AGTAAAATCCAAAGAAGGAA+GGG	-	chr8_4:10300752-10300771	Msa1312900:intron	30.0%
GGTTATGGATACATTAAAAC+GGG	+	chr8_4:10301115-10301134	None:intergenic	30.0%
AAAGAGTTGGATTAAGGTTA+TGG	+	chr8_4:10301130-10301149	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	10300155	10309961	10300155	ID=Msa1312900;Name=Msa1312900
chr8_4	mRNA	10300155	10309961	10300155	ID=Msa1312900-mRNA-1;Parent=Msa1312900;Name=Msa1312900-mRNA-1;_AED=0.16;_eAED=0.24;_QI=627\|0.5\|0.4\|0.8\|0.25\|0.2\|5\|0\|71
chr8_4	exon	10300155	10300159	10300155	ID=Msa1312900-mRNA-1:exon:3881;Parent=Msa1312900-mRNA-1
chr8_4	exon	10303903	10303981	10303903	ID=Msa1312900-mRNA-1:exon:3880;Parent=Msa1312900-mRNA-1
chr8_4	exon	10305053	10305106	10305053	ID=Msa1312900-mRNA-1:exon:3879;Parent=Msa1312900-mRNA-1
chr8_4	exon	10306486	10306568	10306486	ID=Msa1312900-mRNA-1:exon:3878;Parent=Msa1312900-mRNA-1
chr8_4	exon	10309343	10309961	10309343	ID=Msa1312900-mRNA-1:exon:3877;Parent=Msa1312900-mRNA-1
chr8_4	five_prime_UTR	10309343	10309961	10309343	ID=Msa1312900-mRNA-1:five_prime_utr;Parent=Msa1312900-mRNA-1
chr8_4	five_prime_UTR	10306561	10306568	10306561	ID=Msa1312900-mRNA-1:five_prime_utr;Parent=Msa1312900-mRNA-1
chr8_4	CDS	10306486	10306560	10306486	ID=Msa1312900-mRNA-1:cds;Parent=Msa1312900-mRNA-1
chr8_4	CDS	10305053	10305106	10305053	ID=Msa1312900-mRNA-1:cds;Parent=Msa1312900-mRNA-1
chr8_4	CDS	10303903	10303981	10303903	ID=Msa1312900-mRNA-1:cds;Parent=Msa1312900-mRNA-1
chr8_4	CDS	10300155	10300159	10300155	ID=Msa1312900-mRNA-1:cds;Parent=Msa1312900-mRNA-1

Gene Sequence	>Msa1312900 ATGAGTTGTCTACTTTTGGAATATTTTTATGGTTCCTTCCCAACCAGTGTTATCACCACCAGAATTGATTGTGAGGACAAATGTTTCGAAGTTGCAAAACGCATAATTGAAGCCATTAAGAGCAAAGGTGTAAACCCTTGTTTTAGGGATTATTACCATTTTACTATGGAGTGCCAAGATTACTCACATGACTCTAGTGTGAAGGCTGAAGGA
Protein sequence	>Msa1312900 MSCLLLEYFYGSFPTSVITTRIDCEDKCFEVAKRIIEAIKSKGVNPCFRDYYHFTMECQDYSHDSSVKAEG