Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa0994030 | 0.800077 | 1.707209e-48 | -8.615850e-47 |
| Msa0050370 | Msa0994030 | 0.805344 | 1.396926e-49 | -8.615850e-47 |
| Msa0075470 | Msa0994030 | 0.823037 | 1.718151e-53 | -8.615850e-47 |
| Msa0105070 | Msa0994030 | 0.807450 | 5.024986e-50 | -8.615850e-47 |
| Msa0637710 | Msa0994030 | 0.818415 | 1.983479e-52 | -8.615850e-47 |
| Msa0661650 | Msa0994030 | 0.808469 | 3.050646e-50 | -8.615850e-47 |
| Msa0681250 | Msa0994030 | 0.802030 | 6.807472e-49 | -8.615850e-47 |
| Msa0755180 | Msa0994030 | 0.816487 | 5.393052e-52 | -8.615850e-47 |
| Msa0768370 | Msa0994030 | 0.810085 | 1.373489e-50 | -8.615850e-47 |
| Msa0131770 | Msa0994030 | 0.802559 | 5.296426e-49 | -8.615850e-47 |
| Msa0459170 | Msa0994030 | 0.800304 | 1.534774e-48 | -8.615850e-47 |
| Msa0466120 | Msa0994030 | 0.800207 | 1.606167e-48 | -8.615850e-47 |
| Msa0479340 | Msa0994030 | 0.800433 | 1.444702e-48 | -8.615850e-47 |
| Msa0994030 | Msa1094200 | 0.816327 | 5.855264e-52 | -8.615850e-47 |
| Msa0994030 | Msa1098260 | 0.804106 | 2.533204e-49 | -8.615850e-47 |
| Msa0994030 | Msa1113170 | 0.820619 | 6.233260e-53 | -8.615850e-47 |
| Msa0994030 | Msa1121490 | 0.810192 | 1.302460e-50 | -8.615850e-47 |
| Msa0994030 | Msa1279160 | 0.803701 | 3.074549e-49 | -8.615850e-47 |
| Msa0994030 | Msa1283800 | 0.813978 | 1.946509e-51 | -8.615850e-47 |
| Msa0994030 | Msa1286760 | 0.806417 | 8.308350e-50 | -8.615850e-47 |
| Msa0994030 | Msa1312900 | 0.803201 | 3.903540e-49 | -8.615850e-47 |
| Msa0994030 | Msa1352280 | -0.805512 | 1.288020e-49 | -8.615850e-47 |
| Msa0994030 | Msa1374470 | 0.802742 | 4.856347e-49 | -8.615850e-47 |
| Msa0994030 | Msa1407640 | -0.817407 | 3.351262e-52 | -8.615850e-47 |
| Msa0994030 | Msa1415910 | 0.823505 | 1.336381e-53 | -8.615850e-47 |
| Msa0330340 | Msa0994030 | 0.805460 | 1.320785e-49 | -8.615850e-47 |
| Msa0843260 | Msa0994030 | 0.833355 | 5.592882e-56 | -8.615850e-47 |
| Msa0852410 | Msa0994030 | 0.824236 | 9.002842e-54 | -8.615850e-47 |
| Msa0852420 | Msa0994030 | 0.814360 | 1.603210e-51 | -8.615850e-47 |
| Msa0897330 | Msa0994030 | 0.802438 | 5.610704e-49 | -8.615850e-47 |
| Msa0925250 | Msa0994030 | 0.810470 | 1.134253e-50 | -8.615850e-47 |
| Msa0925270 | Msa0994030 | 0.813936 | 1.988875e-51 | -8.615850e-47 |
| Msa0930830 | Msa0994030 | -0.825606 | 4.278087e-54 | -8.615850e-47 |
| Msa0958550 | Msa0994030 | 0.802417 | 5.666278e-49 | -8.615850e-47 |
| Msa0960720 | Msa0994030 | 0.828648 | 7.999638e-55 | -8.615850e-47 |
| Msa0974080 | Msa0994030 | 0.805835 | 1.101987e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0994030 | MtrunA17_Chr3g0126481 | 57.500 | 40 | 17 | 0 | 1 | 40 | 589 | 628 | 1.17e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCGCTTAAAATTCTCATT+GGG | 0.344028 | 6_4:+68057187 | None:intergenic |
| TAGGGACGGTATTGTGATAA+TGG | 0.352421 | 6_4:-68058819 | Msa0994030:CDS |
| TCCTCGCTTAAAATTCTCAT+TGG | 0.354990 | 6_4:+68057186 | None:intergenic |
| TTGGCATGCATAAAATTAGT+TGG | 0.381168 | 6_4:-68057118 | Msa0994030:CDS |
| GAAAGATTGTTCCCGACAAA+TGG | 0.403457 | 6_4:-68057216 | Msa0994030:intron |
| TCCATTGGATGTACAACATT+GGG | 0.423702 | 6_4:+68058768 | None:intergenic |
| TTGGGGAATTCCCATTTGTC+GGG | 0.440823 | 6_4:+68057205 | None:intergenic |
| TGCATAAAATTAGTTGGGAT+TGG | 0.453782 | 6_4:-68057112 | Msa0994030:CDS |
| TTGTGATAATGGAAAATTAG+AGG | 0.457714 | 6_4:-68058808 | Msa0994030:CDS |
| TGGCATGCATAAAATTAGTT+GGG | 0.465951 | 6_4:-68057117 | Msa0994030:CDS |
| ATTGGGGAATTCCCATTTGT+CGG | 0.480537 | 6_4:+68057204 | None:intergenic |
| GGCATACCATTTACTGTTGG+AGG | 0.496930 | 6_4:+68058690 | None:intergenic |
| ATAAAATTAGTTGGGATTGG+TGG | 0.499396 | 6_4:-68057109 | Msa0994030:CDS |
| AAAGATTGTTCCCGACAAAT+GGG | 0.499931 | 6_4:-68057215 | Msa0994030:intron |
| TCCCAATGTTGTACATCCAA+TGG | 0.511956 | 6_4:-68058769 | Msa0994030:CDS |
| GTGTAAAAGAACCAAATTGT+TGG | 0.513290 | 6_4:-68057137 | Msa0994030:CDS |
| AATTGTGCTTGAAAATCCAT+TGG | 0.514501 | 6_4:+68058753 | None:intergenic |
| TACACTTGATTGGTGGGAGA+AGG | 0.523602 | 6_4:+68057155 | None:intergenic |
| ATCCATTGGATGTACAACAT+TGG | 0.533775 | 6_4:+68058767 | None:intergenic |
| GATGTACAACATTGGGAGGA+TGG | 0.546394 | 6_4:+68058775 | None:intergenic |
| GAAACTTCACATCAAACTAG+TGG | 0.601116 | 6_4:-68057087 | None:intergenic |
| CTCGCTTAAAATTCTCATTG+GGG | 0.608778 | 6_4:+68057188 | None:intergenic |
| ACAATGTTCTCACATGCTGA+AGG | 0.646487 | 6_4:+68058714 | None:intergenic |
| ATTGGATGTACAACATTGGG+AGG | 0.646858 | 6_4:+68058771 | None:intergenic |
| ACATTGGGAGGATGGTACAA+AGG | 0.669561 | 6_4:+68058783 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAAAACTGAAATTTTT+TGG | - | chr6_4:68057574-68057593 | Msa0994030:intron | 10.0% |
| !! | AAATTGTAAAAAAAAAATTC+GGG | - | chr6_4:68057602-68057621 | Msa0994030:intron | 10.0% |
| !! | TTAATTAAACTAACAAAAAA+AGG | + | chr6_4:68057969-68057988 | None:intergenic | 10.0% |
| !! | TTCAACTATTTATTATAATA+TGG | - | chr6_4:68058248-68058267 | Msa0994030:intron | 10.0% |
| !! | TCAACTATTTATTATAATAT+GGG | - | chr6_4:68058249-68058268 | Msa0994030:intron | 10.0% |
| !!! | TAATTATTGATTATAATAAG+GGG | - | chr6_4:68058343-68058362 | Msa0994030:intron | 10.0% |
| !!! | AAATTAAAACTGAAATTTTT+TGG | - | chr6_4:68057574-68057593 | Msa0994030:intron | 10.0% |
| !! | AAATTGTAAAAAAAAAATTC+GGG | - | chr6_4:68057602-68057621 | Msa0994030:intron | 10.0% |
| !! | TTAATTAAACTAACAAAAAA+AGG | + | chr6_4:68057969-68057988 | None:intergenic | 10.0% |
| !! | TTCAACTATTTATTATAATA+TGG | - | chr6_4:68058248-68058267 | Msa0994030:intron | 10.0% |
| !! | TCAACTATTTATTATAATAT+GGG | - | chr6_4:68058249-68058268 | Msa0994030:intron | 10.0% |
| !!! | TAATTATTGATTATAATAAG+GGG | - | chr6_4:68058343-68058362 | Msa0994030:intron | 10.0% |
| !!! | TGGAAAAAAAATTTTTTTGA+AGG | - | chr6_4:68057632-68057651 | Msa0994030:intron | 15.0% |
| !! | GAAAAAAAAAAAATAAACCA+GGG | - | chr6_4:68057654-68057673 | Msa0994030:intron | 15.0% |
| !! | AAAAAAAAAAAATAAACCAG+GGG | - | chr6_4:68057655-68057674 | Msa0994030:intron | 15.0% |
| !! | CAACTATTTATTATAATATG+GGG | - | chr6_4:68058250-68058269 | Msa0994030:intron | 15.0% |
| !!! | TTTTCTTTCTTTTTAGTTTT+TGG | - | chr6_4:68058520-68058539 | Msa0994030:intron | 15.0% |
| !! | ATGTTAAATAAAAACAATAG+TGG | + | chr6_4:68058546-68058565 | None:intergenic | 15.0% |
| !!! | TGGAAAAAAAATTTTTTTGA+AGG | - | chr6_4:68057632-68057651 | Msa0994030:intron | 15.0% |
| !! | GAAAAAAAAAAAATAAACCA+GGG | - | chr6_4:68057654-68057673 | Msa0994030:intron | 15.0% |
| !! | AAAAAAAAAAAATAAACCAG+GGG | - | chr6_4:68057655-68057674 | Msa0994030:intron | 15.0% |
| !! | CAACTATTTATTATAATATG+GGG | - | chr6_4:68058250-68058269 | Msa0994030:intron | 15.0% |
| !!! | TTTTCTTTCTTTTTAGTTTT+TGG | - | chr6_4:68058520-68058539 | Msa0994030:intron | 15.0% |
| !! | ATGTTAAATAAAAACAATAG+TGG | + | chr6_4:68058546-68058565 | None:intergenic | 15.0% |
| !!! | ATTTTCAAGCACAATTTTAT+CGG | - | chr6_4:68057160-68057179 | Msa0994030:CDS | 20.0% |
| !!! | GAATTGATTTATGATATCAA+GGG | + | chr6_4:68057261-68057280 | None:intergenic | 20.0% |
| !! | GGAAAAAAAAAAAATAAACC+AGG | - | chr6_4:68057653-68057672 | Msa0994030:intron | 20.0% |
| !! | TAGATATATTATTTGCATTC+TGG | + | chr6_4:68058056-68058075 | None:intergenic | 20.0% |
| !! | AAATAATATATCTAAAGACG+AGG | - | chr6_4:68058062-68058081 | Msa0994030:intron | 20.0% |
| !! | AATAATATATCTAAAGACGA+GGG | - | chr6_4:68058063-68058082 | Msa0994030:intron | 20.0% |
| !! | GAATTTGAATTTCAATTCAA+GGG | - | chr6_4:68058085-68058104 | Msa0994030:intron | 20.0% |
| !!! | GTCTTATTTATATAAATACC+TGG | + | chr6_4:68058213-68058232 | None:intergenic | 20.0% |
| !! | AAACAAAACATTACCTAAAT+TGG | + | chr6_4:68058493-68058512 | None:intergenic | 20.0% |
| !! | TGTCTGTCAAAAAATAAAAA+GGG | + | chr6_4:68058569-68058588 | None:intergenic | 20.0% |
| !! | ATGTCTGTCAAAAAATAAAA+AGG | + | chr6_4:68058570-68058589 | None:intergenic | 20.0% |
| !!! | AAATGAAATTAATTTGCAAG+AGG | - | chr6_4:68058611-68058630 | Msa0994030:intron | 20.0% |
| !!! | ATTTTCAAGCACAATTTTAT+CGG | - | chr6_4:68057160-68057179 | Msa0994030:CDS | 20.0% |
| !!! | GAATTGATTTATGATATCAA+GGG | + | chr6_4:68057261-68057280 | None:intergenic | 20.0% |
| !! | GGAAAAAAAAAAAATAAACC+AGG | - | chr6_4:68057653-68057672 | Msa0994030:intron | 20.0% |
| !! | TAGATATATTATTTGCATTC+TGG | + | chr6_4:68058056-68058075 | None:intergenic | 20.0% |
| !! | AAATAATATATCTAAAGACG+AGG | - | chr6_4:68058062-68058081 | Msa0994030:intron | 20.0% |
| !! | AATAATATATCTAAAGACGA+GGG | - | chr6_4:68058063-68058082 | Msa0994030:intron | 20.0% |
| !! | GAATTTGAATTTCAATTCAA+GGG | - | chr6_4:68058085-68058104 | Msa0994030:intron | 20.0% |
| !!! | GTCTTATTTATATAAATACC+TGG | + | chr6_4:68058213-68058232 | None:intergenic | 20.0% |
| !! | AAACAAAACATTACCTAAAT+TGG | + | chr6_4:68058493-68058512 | None:intergenic | 20.0% |
| !! | TGTCTGTCAAAAAATAAAAA+GGG | + | chr6_4:68058569-68058588 | None:intergenic | 20.0% |
| !! | ATGTCTGTCAAAAAATAAAA+AGG | + | chr6_4:68058570-68058589 | None:intergenic | 20.0% |
| !!! | AAATGAAATTAATTTGCAAG+AGG | - | chr6_4:68058611-68058630 | Msa0994030:intron | 20.0% |
| !!! | TTGTGATAATGGAAAATTAG+AGG | - | chr6_4:68057098-68057117 | Msa0994030:CDS | 25.0% |
| !! | CGAATTGATTTATGATATCA+AGG | + | chr6_4:68057262-68057281 | None:intergenic | 25.0% |
| !!! | AATTCGATCCTTTTTTTCTT+CGG | - | chr6_4:68057276-68057295 | Msa0994030:intron | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+GGG | + | chr6_4:68057754-68057773 | None:intergenic | 25.0% |
| ! | TTTAACTGATTAAACTTTGC+AGG | + | chr6_4:68057753-68057772 | None:intergenic | 25.0% |
| !!! | AAAATTTTGAAATAAGCCAG+GGG | + | chr6_4:68057478-68057497 | None:intergenic | 25.0% |
| !!! | CAAAATTTTGAAATAAGCCA+GGG | + | chr6_4:68057479-68057498 | None:intergenic | 25.0% |
| !!! | TCAAAATTTTGAAATAAGCC+AGG | + | chr6_4:68057480-68057499 | None:intergenic | 25.0% |
| ! | AAAAAAATTCGGGAAAAATC+TGG | - | chr6_4:68057612-68057631 | Msa0994030:intron | 25.0% |
| ! | TTTAACTGATTAAACTTTGC+AGG | - | chr6_4:68057753-68057772 | Msa0994030:intron | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+GGG | - | chr6_4:68057754-68057773 | Msa0994030:intron | 25.0% |
| ! | TAGAACATTTGTAGGTTAAA+AGG | + | chr6_4:68057941-68057960 | None:intergenic | 25.0% |
| ! | GGAATTTGAATTTCAATTCA+AGG | - | chr6_4:68058084-68058103 | Msa0994030:intron | 25.0% |
| ! | TGAATTCTAATTCTAGTGAA+AGG | - | chr6_4:68058146-68058165 | Msa0994030:intron | 25.0% |
| !! | TTTTCACTTCAACTTTTCAT+AGG | - | chr6_4:68058310-68058329 | Msa0994030:intron | 25.0% |
| !! | TTTCACTTCAACTTTTCATA+GGG | - | chr6_4:68058311-68058330 | Msa0994030:intron | 25.0% |
| !!! | TTGTGATAATGGAAAATTAG+AGG | - | chr6_4:68057098-68057117 | Msa0994030:CDS | 25.0% |
| !! | CGAATTGATTTATGATATCA+AGG | + | chr6_4:68057262-68057281 | None:intergenic | 25.0% |
| !!! | AATTCGATCCTTTTTTTCTT+CGG | - | chr6_4:68057276-68057295 | Msa0994030:intron | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+GGG | + | chr6_4:68057754-68057773 | None:intergenic | 25.0% |
| ! | TTTAACTGATTAAACTTTGC+AGG | + | chr6_4:68057753-68057772 | None:intergenic | 25.0% |
| !!! | AAAATTTTGAAATAAGCCAG+GGG | + | chr6_4:68057478-68057497 | None:intergenic | 25.0% |
| !!! | CAAAATTTTGAAATAAGCCA+GGG | + | chr6_4:68057479-68057498 | None:intergenic | 25.0% |
| !!! | TCAAAATTTTGAAATAAGCC+AGG | + | chr6_4:68057480-68057499 | None:intergenic | 25.0% |
| ! | AAAAAAATTCGGGAAAAATC+TGG | - | chr6_4:68057612-68057631 | Msa0994030:intron | 25.0% |
| ! | TTTAACTGATTAAACTTTGC+AGG | - | chr6_4:68057753-68057772 | Msa0994030:intron | 25.0% |
| ! | TTAACTGATTAAACTTTGCA+GGG | - | chr6_4:68057754-68057773 | Msa0994030:intron | 25.0% |
| ! | TAGAACATTTGTAGGTTAAA+AGG | + | chr6_4:68057941-68057960 | None:intergenic | 25.0% |
| ! | GGAATTTGAATTTCAATTCA+AGG | - | chr6_4:68058084-68058103 | Msa0994030:intron | 25.0% |
| ! | TGAATTCTAATTCTAGTGAA+AGG | - | chr6_4:68058146-68058165 | Msa0994030:intron | 25.0% |
| !! | TTTTCACTTCAACTTTTCAT+AGG | - | chr6_4:68058310-68058329 | Msa0994030:intron | 25.0% |
| !! | TTTCACTTCAACTTTTCATA+GGG | - | chr6_4:68058311-68058330 | Msa0994030:intron | 25.0% |
| AATTGTGCTTGAAAATCCAT+TGG | + | chr6_4:68057156-68057175 | None:intergenic | 30.0% | |
| TATTCAAGCCGAAGAAAAAA+AGG | + | chr6_4:68057287-68057306 | None:intergenic | 30.0% | |
| TAACTGATTAAACTTTGCAG+GGG | + | chr6_4:68057755-68057774 | None:intergenic | 30.0% | |
| CAATTTACCAAAAATGGCAT+GGG | - | chr6_4:68057438-68057457 | Msa0994030:intron | 30.0% | |
| CAATTTACCAAAAATGGCAT+GGG | + | chr6_4:68057438-68057457 | None:intergenic | 30.0% | |
| TAACTGATTAAACTTTGCAG+GGG | - | chr6_4:68057755-68057774 | Msa0994030:intron | 30.0% | |
| CACTAAATCTAGGAAGAAAA+AGG | + | chr6_4:68057858-68057877 | None:intergenic | 30.0% | |
| ! | CTTTTTCTTCCTAGATTTAG+TGG | - | chr6_4:68057856-68057875 | Msa0994030:intron | 30.0% |
| TGAAATAAGTATTAACCTCG+TGG | + | chr6_4:68057918-68057937 | None:intergenic | 30.0% | |
| AGGTGAAATAGAACATTTGT+AGG | + | chr6_4:68057949-68057968 | None:intergenic | 30.0% | |
| TACATACAAAATCAGAAACC+AGG | - | chr6_4:68058192-68058211 | Msa0994030:intron | 30.0% | |
| TTAACGTACCATCTATCAAA+AGG | + | chr6_4:68058593-68058612 | None:intergenic | 30.0% | |
| GATTATATCCAGTTAGTGTA+TGG | + | chr6_4:68058637-68058656 | None:intergenic | 30.0% | |
| ! | TTCTTTTACACTTGATTGGT+GGG | + | chr6_4:68058760-68058779 | None:intergenic | 30.0% |
| !! | TTGGTTCTTTTACACTTGAT+TGG | + | chr6_4:68058764-68058783 | None:intergenic | 30.0% |
| GTGTAAAAGAACCAAATTGT+TGG | - | chr6_4:68058769-68058788 | Msa0994030:CDS | 30.0% | |
| ! | TTTTATGCATGCCAACAATT+TGG | + | chr6_4:68058783-68058802 | None:intergenic | 30.0% |
| TTGGCATGCATAAAATTAGT+TGG | - | chr6_4:68058788-68058807 | Msa0994030:CDS | 30.0% | |
| TGGCATGCATAAAATTAGTT+GGG | - | chr6_4:68058789-68058808 | Msa0994030:CDS | 30.0% | |
| TGCATAAAATTAGTTGGGAT+TGG | - | chr6_4:68058794-68058813 | Msa0994030:CDS | 30.0% | |
| ATAAAATTAGTTGGGATTGG+TGG | - | chr6_4:68058797-68058816 | Msa0994030:CDS | 30.0% | |
| AATTGTGCTTGAAAATCCAT+TGG | + | chr6_4:68057156-68057175 | None:intergenic | 30.0% | |
| TATTCAAGCCGAAGAAAAAA+AGG | + | chr6_4:68057287-68057306 | None:intergenic | 30.0% | |
| TAACTGATTAAACTTTGCAG+GGG | + | chr6_4:68057755-68057774 | None:intergenic | 30.0% | |
| CAATTTACCAAAAATGGCAT+GGG | - | chr6_4:68057438-68057457 | Msa0994030:intron | 30.0% | |
| CAATTTACCAAAAATGGCAT+GGG | + | chr6_4:68057438-68057457 | None:intergenic | 30.0% | |
| TAACTGATTAAACTTTGCAG+GGG | - | chr6_4:68057755-68057774 | Msa0994030:intron | 30.0% | |
| CACTAAATCTAGGAAGAAAA+AGG | + | chr6_4:68057858-68057877 | None:intergenic | 30.0% | |
| ! | CTTTTTCTTCCTAGATTTAG+TGG | - | chr6_4:68057856-68057875 | Msa0994030:intron | 30.0% |
| TGAAATAAGTATTAACCTCG+TGG | + | chr6_4:68057918-68057937 | None:intergenic | 30.0% | |
| AGGTGAAATAGAACATTTGT+AGG | + | chr6_4:68057949-68057968 | None:intergenic | 30.0% | |
| TACATACAAAATCAGAAACC+AGG | - | chr6_4:68058192-68058211 | Msa0994030:intron | 30.0% | |
| TTAACGTACCATCTATCAAA+AGG | + | chr6_4:68058593-68058612 | None:intergenic | 30.0% | |
| GATTATATCCAGTTAGTGTA+TGG | + | chr6_4:68058637-68058656 | None:intergenic | 30.0% | |
| ! | TTCTTTTACACTTGATTGGT+GGG | + | chr6_4:68058760-68058779 | None:intergenic | 30.0% |
| !! | TTGGTTCTTTTACACTTGAT+TGG | + | chr6_4:68058764-68058783 | None:intergenic | 30.0% |
| GTGTAAAAGAACCAAATTGT+TGG | - | chr6_4:68058769-68058788 | Msa0994030:CDS | 30.0% | |
| ! | TTTTATGCATGCCAACAATT+TGG | + | chr6_4:68058783-68058802 | None:intergenic | 30.0% |
| TTGGCATGCATAAAATTAGT+TGG | - | chr6_4:68058788-68058807 | Msa0994030:CDS | 30.0% | |
| TGGCATGCATAAAATTAGTT+GGG | - | chr6_4:68058789-68058808 | Msa0994030:CDS | 30.0% | |
| TGCATAAAATTAGTTGGGAT+TGG | - | chr6_4:68058794-68058813 | Msa0994030:CDS | 30.0% | |
| ATAAAATTAGTTGGGATTGG+TGG | - | chr6_4:68058797-68058816 | Msa0994030:CDS | 30.0% | |
| TCCATTGGATGTACAACATT+GGG | + | chr6_4:68057141-68057160 | None:intergenic | 35.0% | |
| ATCCATTGGATGTACAACAT+TGG | + | chr6_4:68057142-68057161 | None:intergenic | 35.0% | |
| GGAATCAGAAGAAATGTTAG+TGG | + | chr6_4:68057240-68057259 | None:intergenic | 35.0% | |
| ! | AAAAAAGGATTAGCGATTGC+AGG | + | chr6_4:68057352-68057371 | None:intergenic | 35.0% |
| !! | TTTTTGGTAAATTGCTGACG+TGG | + | chr6_4:68057701-68057720 | None:intergenic | 35.0% |
| CGTCAGCAATTTACCAAAAA+TGG | - | chr6_4:68057432-68057451 | Msa0994030:intron | 35.0% | |
| GCAATTTACCAAAAATGGCA+TGG | - | chr6_4:68057437-68057456 | Msa0994030:intron | 35.0% | |
| GCAATTTACCAAAAATGGCA+TGG | + | chr6_4:68057437-68057456 | None:intergenic | 35.0% | |
| CGTCAGCAATTTACCAAAAA+TGG | + | chr6_4:68057432-68057451 | None:intergenic | 35.0% | |
| !! | TTTTTGGTAAATTGCTGACG+TGG | - | chr6_4:68057701-68057720 | Msa0994030:intron | 35.0% |
| TTTGCAGGGGCAAAAAAAAA+AGG | - | chr6_4:68057768-68057787 | Msa0994030:intron | 35.0% | |
| AAAAAAAGGTTAGCGATTGC+AGG | - | chr6_4:68057782-68057801 | Msa0994030:intron | 35.0% | |
| AAAAAAGGTTAGCGATTGCA+GGG | - | chr6_4:68057783-68057802 | Msa0994030:intron | 35.0% | |
| TTTCTTCCTAGATTTAGTGG+AGG | - | chr6_4:68057859-68057878 | Msa0994030:intron | 35.0% | |
| TAACCTCGTGGTAATTAAGT+GGG | + | chr6_4:68057906-68057925 | None:intergenic | 35.0% | |
| TTAACCTCGTGGTAATTAAG+TGG | + | chr6_4:68057907-68057926 | None:intergenic | 35.0% | |
| !! | ATAGACCAGATTAGTTTCAC+AGG | - | chr6_4:68058111-68058130 | Msa0994030:intron | 35.0% |
| ! | TTGTGCTTAGTTCTCAAAGA+GGG | - | chr6_4:68058372-68058391 | Msa0994030:intron | 35.0% |
| ! | AAATAGTTCTGCTAATGAGC+AGG | - | chr6_4:68058428-68058447 | Msa0994030:intron | 35.0% |
| CCTAAATTGGATTGTGATCA+TGG | + | chr6_4:68058480-68058499 | None:intergenic | 35.0% | |
| CCATGATCACAATCCAATTT+AGG | - | chr6_4:68058477-68058496 | Msa0994030:intron | 35.0% | |
| ! | ACAGACATCCTTTTGATAGA+TGG | - | chr6_4:68058582-68058601 | Msa0994030:intron | 35.0% |
| ATTTGTCGGGAACAATCTTT+CGG | + | chr6_4:68058691-68058710 | None:intergenic | 35.0% | |
| AAAGATTGTTCCCGACAAAT+GGG | - | chr6_4:68058691-68058710 | Msa0994030:intron | 35.0% | |
| CTCGCTTAAAATTCTCATTG+GGG | + | chr6_4:68058721-68058740 | None:intergenic | 35.0% | |
| CCTCGCTTAAAATTCTCATT+GGG | + | chr6_4:68058722-68058741 | None:intergenic | 35.0% | |
| TCCTCGCTTAAAATTCTCAT+TGG | + | chr6_4:68058723-68058742 | None:intergenic | 35.0% | |
| ! | GTTCTTTTACACTTGATTGG+TGG | + | chr6_4:68058761-68058780 | None:intergenic | 35.0% |
| TGGAAACTTCACATCAAACT+AGG | - | chr6_4:68058817-68058836 | Msa0994030:CDS | 35.0% | |
| GGAAACTTCACATCAAACTA+GGG | - | chr6_4:68058818-68058837 | Msa0994030:CDS | 35.0% | |
| TCCATTGGATGTACAACATT+GGG | + | chr6_4:68057141-68057160 | None:intergenic | 35.0% | |
| ATCCATTGGATGTACAACAT+TGG | + | chr6_4:68057142-68057161 | None:intergenic | 35.0% | |
| GGAATCAGAAGAAATGTTAG+TGG | + | chr6_4:68057240-68057259 | None:intergenic | 35.0% | |
| ! | AAAAAAGGATTAGCGATTGC+AGG | + | chr6_4:68057352-68057371 | None:intergenic | 35.0% |
| !! | TTTTTGGTAAATTGCTGACG+TGG | + | chr6_4:68057701-68057720 | None:intergenic | 35.0% |
| CGTCAGCAATTTACCAAAAA+TGG | - | chr6_4:68057432-68057451 | Msa0994030:intron | 35.0% | |
| GCAATTTACCAAAAATGGCA+TGG | - | chr6_4:68057437-68057456 | Msa0994030:intron | 35.0% | |
| GCAATTTACCAAAAATGGCA+TGG | + | chr6_4:68057437-68057456 | None:intergenic | 35.0% | |
| CGTCAGCAATTTACCAAAAA+TGG | + | chr6_4:68057432-68057451 | None:intergenic | 35.0% | |
| !! | TTTTTGGTAAATTGCTGACG+TGG | - | chr6_4:68057701-68057720 | Msa0994030:intron | 35.0% |
| TTTGCAGGGGCAAAAAAAAA+AGG | - | chr6_4:68057768-68057787 | Msa0994030:intron | 35.0% | |
| AAAAAAAGGTTAGCGATTGC+AGG | - | chr6_4:68057782-68057801 | Msa0994030:intron | 35.0% | |
| AAAAAAGGTTAGCGATTGCA+GGG | - | chr6_4:68057783-68057802 | Msa0994030:intron | 35.0% | |
| TTTCTTCCTAGATTTAGTGG+AGG | - | chr6_4:68057859-68057878 | Msa0994030:intron | 35.0% | |
| TAACCTCGTGGTAATTAAGT+GGG | + | chr6_4:68057906-68057925 | None:intergenic | 35.0% | |
| TTAACCTCGTGGTAATTAAG+TGG | + | chr6_4:68057907-68057926 | None:intergenic | 35.0% | |
| !! | ATAGACCAGATTAGTTTCAC+AGG | - | chr6_4:68058111-68058130 | Msa0994030:intron | 35.0% |
| ! | TTGTGCTTAGTTCTCAAAGA+GGG | - | chr6_4:68058372-68058391 | Msa0994030:intron | 35.0% |
| ! | AAATAGTTCTGCTAATGAGC+AGG | - | chr6_4:68058428-68058447 | Msa0994030:intron | 35.0% |
| CCTAAATTGGATTGTGATCA+TGG | + | chr6_4:68058480-68058499 | None:intergenic | 35.0% | |
| CCATGATCACAATCCAATTT+AGG | - | chr6_4:68058477-68058496 | Msa0994030:intron | 35.0% | |
| ! | ACAGACATCCTTTTGATAGA+TGG | - | chr6_4:68058582-68058601 | Msa0994030:intron | 35.0% |
| ATTTGTCGGGAACAATCTTT+CGG | + | chr6_4:68058691-68058710 | None:intergenic | 35.0% | |
| AAAGATTGTTCCCGACAAAT+GGG | - | chr6_4:68058691-68058710 | Msa0994030:intron | 35.0% | |
| CTCGCTTAAAATTCTCATTG+GGG | + | chr6_4:68058721-68058740 | None:intergenic | 35.0% | |
| CCTCGCTTAAAATTCTCATT+GGG | + | chr6_4:68058722-68058741 | None:intergenic | 35.0% | |
| TCCTCGCTTAAAATTCTCAT+TGG | + | chr6_4:68058723-68058742 | None:intergenic | 35.0% | |
| ! | GTTCTTTTACACTTGATTGG+TGG | + | chr6_4:68058761-68058780 | None:intergenic | 35.0% |
| ATTGGATGTACAACATTGGG+AGG | + | chr6_4:68057138-68057157 | None:intergenic | 40.0% | |
| TCCCAATGTTGTACATCCAA+TGG | - | chr6_4:68057137-68057156 | Msa0994030:CDS | 40.0% | |
| ACAATGTTCTCACATGCTGA+AGG | + | chr6_4:68057195-68057214 | None:intergenic | 40.0% | |
| ATTGTGCCTCCAACAGTAAA+TGG | - | chr6_4:68057210-68057229 | Msa0994030:CDS | 40.0% | |
| AGTGGCATACCATTTACTGT+TGG | + | chr6_4:68057222-68057241 | None:intergenic | 40.0% | |
| TTAAACGACCCCTATTTGCA+GGG | + | chr6_4:68057320-68057339 | None:intergenic | 40.0% | |
| TTTAAACGACCCCTATTTGC+AGG | + | chr6_4:68057321-68057340 | None:intergenic | 40.0% | |
| ACTTTGCAGGGGCAAAAAAA+AGG | + | chr6_4:68057766-68057785 | None:intergenic | 40.0% | |
| !!! | GTCAATTCCCATGCCATTTT+TGG | - | chr6_4:68057685-68057704 | Msa0994030:intron | 40.0% |
| TGACGTGGCAGTGATTAATT+GGG | - | chr6_4:68057716-68057735 | Msa0994030:intron | 40.0% | |
| GCAGTGATTAATTGGGTCAA+AGG | - | chr6_4:68057723-68057742 | Msa0994030:intron | 40.0% | |
| TTATTCGTCCCTGCAAATAG+GGG | + | chr6_4:68057825-68057844 | None:intergenic | 40.0% | |
| GTTATTCGTCCCTGCAAATA+GGG | + | chr6_4:68057826-68057845 | None:intergenic | 40.0% | |
| TGTTATTCGTCCCTGCAAAT+AGG | + | chr6_4:68057827-68057846 | None:intergenic | 40.0% | |
| ! | TCGTGGTAATTAAGTGGGTT+TGG | + | chr6_4:68057901-68057920 | None:intergenic | 40.0% |
| AAACCCACTTAATTACCACG+AGG | - | chr6_4:68057900-68057919 | Msa0994030:intron | 40.0% | |
| !! | GCATTCTGGTGTTTGTTGTA+AGG | + | chr6_4:68058042-68058061 | None:intergenic | 40.0% |
| TAGTGAAAGGATTTCAGCTG+TGG | - | chr6_4:68058159-68058178 | Msa0994030:intron | 40.0% | |
| ! | CTTGTGCTTAGTTCTCAAAG+AGG | - | chr6_4:68058371-68058390 | Msa0994030:intron | 40.0% |
| ! | GAAGCATCACAACAAGTTGA+AGG | - | chr6_4:68058402-68058421 | Msa0994030:intron | 40.0% |
| GGAAAATTCAGACAACTCTC+CGG | - | chr6_4:68058449-68058468 | Msa0994030:intron | 40.0% | |
| GATTGTGATCATGGATGATC+CGG | + | chr6_4:68058471-68058490 | None:intergenic | 40.0% | |
| GAAAGATTGTTCCCGACAAA+TGG | - | chr6_4:68058690-68058709 | Msa0994030:intron | 40.0% | |
| ATTGGGGAATTCCCATTTGT+CGG | + | chr6_4:68058705-68058724 | None:intergenic | 40.0% | |
| ! | CCCAATGAGAATTTTAAGCG+AGG | - | chr6_4:68058719-68058738 | Msa0994030:CDS | 40.0% |
| ATTGGATGTACAACATTGGG+AGG | + | chr6_4:68057138-68057157 | None:intergenic | 40.0% | |
| TCCCAATGTTGTACATCCAA+TGG | - | chr6_4:68057137-68057156 | Msa0994030:CDS | 40.0% | |
| ACAATGTTCTCACATGCTGA+AGG | + | chr6_4:68057195-68057214 | None:intergenic | 40.0% | |
| ATTGTGCCTCCAACAGTAAA+TGG | - | chr6_4:68057210-68057229 | Msa0994030:CDS | 40.0% | |
| AGTGGCATACCATTTACTGT+TGG | + | chr6_4:68057222-68057241 | None:intergenic | 40.0% | |
| TTAAACGACCCCTATTTGCA+GGG | + | chr6_4:68057320-68057339 | None:intergenic | 40.0% | |
| TTTAAACGACCCCTATTTGC+AGG | + | chr6_4:68057321-68057340 | None:intergenic | 40.0% | |
| ACTTTGCAGGGGCAAAAAAA+AGG | + | chr6_4:68057766-68057785 | None:intergenic | 40.0% | |
| !!! | GTCAATTCCCATGCCATTTT+TGG | - | chr6_4:68057685-68057704 | Msa0994030:intron | 40.0% |
| TGACGTGGCAGTGATTAATT+GGG | - | chr6_4:68057716-68057735 | Msa0994030:intron | 40.0% | |
| GCAGTGATTAATTGGGTCAA+AGG | - | chr6_4:68057723-68057742 | Msa0994030:intron | 40.0% | |
| TTATTCGTCCCTGCAAATAG+GGG | + | chr6_4:68057825-68057844 | None:intergenic | 40.0% | |
| GTTATTCGTCCCTGCAAATA+GGG | + | chr6_4:68057826-68057845 | None:intergenic | 40.0% | |
| TGTTATTCGTCCCTGCAAAT+AGG | + | chr6_4:68057827-68057846 | None:intergenic | 40.0% | |
| ! | TCGTGGTAATTAAGTGGGTT+TGG | + | chr6_4:68057901-68057920 | None:intergenic | 40.0% |
| AAACCCACTTAATTACCACG+AGG | - | chr6_4:68057900-68057919 | Msa0994030:intron | 40.0% | |
| !! | GCATTCTGGTGTTTGTTGTA+AGG | + | chr6_4:68058042-68058061 | None:intergenic | 40.0% |
| TAGTGAAAGGATTTCAGCTG+TGG | - | chr6_4:68058159-68058178 | Msa0994030:intron | 40.0% | |
| ! | CTTGTGCTTAGTTCTCAAAG+AGG | - | chr6_4:68058371-68058390 | Msa0994030:intron | 40.0% |
| ! | GAAGCATCACAACAAGTTGA+AGG | - | chr6_4:68058402-68058421 | Msa0994030:intron | 40.0% |
| GGAAAATTCAGACAACTCTC+CGG | - | chr6_4:68058449-68058468 | Msa0994030:intron | 40.0% | |
| GATTGTGATCATGGATGATC+CGG | + | chr6_4:68058471-68058490 | None:intergenic | 40.0% | |
| GAAAGATTGTTCCCGACAAA+TGG | - | chr6_4:68058690-68058709 | Msa0994030:intron | 40.0% | |
| ATTGGGGAATTCCCATTTGT+CGG | + | chr6_4:68058705-68058724 | None:intergenic | 40.0% | |
| ! | CCCAATGAGAATTTTAAGCG+AGG | - | chr6_4:68058719-68058738 | Msa0994030:CDS | 40.0% |
| ACATTGGGAGGATGGTACAA+AGG | + | chr6_4:68057126-68057145 | None:intergenic | 45.0% | |
| GATGTACAACATTGGGAGGA+TGG | + | chr6_4:68057134-68057153 | None:intergenic | 45.0% | |
| GGCATACCATTTACTGTTGG+AGG | + | chr6_4:68057219-68057238 | None:intergenic | 45.0% | |
| TGTGATTCGTCCCTGCAAAT+AGG | - | chr6_4:68057307-68057326 | Msa0994030:intron | 45.0% | |
| GTGATTCGTCCCTGCAAATA+GGG | - | chr6_4:68057308-68057327 | Msa0994030:intron | 45.0% | |
| TGATTCGTCCCTGCAAATAG+GGG | - | chr6_4:68057309-68057328 | Msa0994030:intron | 45.0% | |
| GCAGTGATTAACTGGGTCAA+AGG | + | chr6_4:68057410-68057429 | None:intergenic | 45.0% | |
| TGACGTGGCAGTGATTAACT+GGG | + | chr6_4:68057417-68057436 | None:intergenic | 45.0% | |
| !!! | GTCGATTCCCATGCCATTTT+TGG | + | chr6_4:68057448-68057467 | None:intergenic | 45.0% |
| GGAATTGACGAAAATACCCC+TGG | + | chr6_4:68057674-68057693 | None:intergenic | 45.0% | |
| CTGACGTGGCAGTGATTAAT+TGG | - | chr6_4:68057715-68057734 | Msa0994030:intron | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | - | chr6_4:68057813-68057832 | Msa0994030:intron | 45.0% | |
| TTAAGCGACCCCTATTTGCA+GGG | - | chr6_4:68057814-68057833 | Msa0994030:intron | 45.0% | |
| ACAGTGCCTCCACTAAATCT+AGG | + | chr6_4:68057868-68057887 | None:intergenic | 45.0% | |
| TGCTGCCTGTGAAACTAATC+TGG | + | chr6_4:68058119-68058138 | None:intergenic | 45.0% | |
| GGGAACAATCTTTCGGTGAA+AGG | + | chr6_4:68058684-68058703 | None:intergenic | 45.0% | |
| TTGGGGAATTCCCATTTGTC+GGG | + | chr6_4:68058704-68058723 | None:intergenic | 45.0% | |
| TACACTTGATTGGTGGGAGA+AGG | + | chr6_4:68058754-68058773 | None:intergenic | 45.0% | |
| ACATTGGGAGGATGGTACAA+AGG | + | chr6_4:68057126-68057145 | None:intergenic | 45.0% | |
| GATGTACAACATTGGGAGGA+TGG | + | chr6_4:68057134-68057153 | None:intergenic | 45.0% | |
| GGCATACCATTTACTGTTGG+AGG | + | chr6_4:68057219-68057238 | None:intergenic | 45.0% | |
| TGTGATTCGTCCCTGCAAAT+AGG | - | chr6_4:68057307-68057326 | Msa0994030:intron | 45.0% | |
| GTGATTCGTCCCTGCAAATA+GGG | - | chr6_4:68057308-68057327 | Msa0994030:intron | 45.0% | |
| TGATTCGTCCCTGCAAATAG+GGG | - | chr6_4:68057309-68057328 | Msa0994030:intron | 45.0% | |
| GCAGTGATTAACTGGGTCAA+AGG | + | chr6_4:68057410-68057429 | None:intergenic | 45.0% | |
| TGACGTGGCAGTGATTAACT+GGG | + | chr6_4:68057417-68057436 | None:intergenic | 45.0% | |
| !!! | GTCGATTCCCATGCCATTTT+TGG | + | chr6_4:68057448-68057467 | None:intergenic | 45.0% |
| GGAATTGACGAAAATACCCC+TGG | + | chr6_4:68057674-68057693 | None:intergenic | 45.0% | |
| CTGACGTGGCAGTGATTAAT+TGG | - | chr6_4:68057715-68057734 | Msa0994030:intron | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | - | chr6_4:68057813-68057832 | Msa0994030:intron | 45.0% | |
| TTAAGCGACCCCTATTTGCA+GGG | - | chr6_4:68057814-68057833 | Msa0994030:intron | 45.0% | |
| ACAGTGCCTCCACTAAATCT+AGG | + | chr6_4:68057868-68057887 | None:intergenic | 45.0% | |
| TGCTGCCTGTGAAACTAATC+TGG | + | chr6_4:68058119-68058138 | None:intergenic | 45.0% | |
| GGGAACAATCTTTCGGTGAA+AGG | + | chr6_4:68058684-68058703 | None:intergenic | 45.0% | |
| TTGGGGAATTCCCATTTGTC+GGG | + | chr6_4:68058704-68058723 | None:intergenic | 45.0% | |
| TACACTTGATTGGTGGGAGA+AGG | + | chr6_4:68058754-68058773 | None:intergenic | 45.0% | |
| !!! | TTAAAAATCATAAAAAATTT+TGG | - | chr6_4:68057537-68057556 | Msa0994030:intron | 5.0% |
| !! | AAAATTGTAAAAAAAAAATT+CGG | - | chr6_4:68057601-68057620 | Msa0994030:intron | 5.0% |
| !!! | TATAATTATTGATTATAATA+AGG | - | chr6_4:68058341-68058360 | Msa0994030:intron | 5.0% |
| !!! | ATAATTATTGATTATAATAA+GGG | - | chr6_4:68058342-68058361 | Msa0994030:intron | 5.0% |
| !!! | TTAAAAATCATAAAAAATTT+TGG | - | chr6_4:68057537-68057556 | Msa0994030:intron | 5.0% |
| !! | AAAATTGTAAAAAAAAAATT+CGG | - | chr6_4:68057601-68057620 | Msa0994030:intron | 5.0% |
| !!! | TATAATTATTGATTATAATA+AGG | - | chr6_4:68058341-68058360 | Msa0994030:intron | 5.0% |
| !!! | ATAATTATTGATTATAATAA+GGG | - | chr6_4:68058342-68058361 | Msa0994030:intron | 5.0% |
| CTGACGTGGCAGTGATTAAC+TGG | + | chr6_4:68057418-68057437 | None:intergenic | 50.0% | |
| GGAATCGACGAAAATACCCC+TGG | - | chr6_4:68057459-68057478 | Msa0994030:intron | 50.0% | |
| GCAAGAGGCCATACACTAAC+TGG | - | chr6_4:68058626-68058645 | Msa0994030:intron | 50.0% | |
| CTGACGTGGCAGTGATTAAC+TGG | + | chr6_4:68057418-68057437 | None:intergenic | 50.0% | |
| GGAATCGACGAAAATACCCC+TGG | - | chr6_4:68057459-68057478 | Msa0994030:intron | 50.0% | |
| GCAAGAGGCCATACACTAAC+TGG | - | chr6_4:68058626-68058645 | Msa0994030:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 68057090 | 68058838 | 68057090 | ID=Msa0994030;Name=Msa0994030 |
| chr6_4 | mRNA | 68057090 | 68058838 | 68057090 | ID=Msa0994030-mRNA-1;Parent=Msa0994030;Name=Msa0994030-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.5|0|0|2|0|92 |
| chr6_4 | exon | 68058704 | 68058838 | 68058704 | ID=Msa0994030-mRNA-1:exon:12575;Parent=Msa0994030-mRNA-1 |
| chr6_4 | exon | 68057090 | 68057233 | 68057090 | ID=Msa0994030-mRNA-1:exon:12574;Parent=Msa0994030-mRNA-1 |
| chr6_4 | CDS | 68058704 | 68058838 | 68058704 | ID=Msa0994030-mRNA-1:cds;Parent=Msa0994030-mRNA-1 |
| chr6_4 | CDS | 68057090 | 68057233 | 68057090 | ID=Msa0994030-mRNA-1:cds;Parent=Msa0994030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
