AlfalfaGEDB | Msa1316450

M. sativa cultivar zhongmu-4 / Msa1316450

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316450	XP_024629469.1	96.654	269	6	2	7	272	1	269	0.0	526

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316450	sp\|Q43385\|DOF37_ARATH	49.813	267	82	16	22	272	66	296	1.97e-63	204

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316450	A0A072TM78	96.654	269	6	2	7	272	1	269	0.0	526

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TFs/TRs:

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Gene ID	Type	Classification
Msa1316450	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0271540	Msa1316450	0.800586	1.344414e-48	-8.615850e-47
Msa0300840	Msa1316450	0.801141	1.035902e-48	-8.615850e-47
Msa0338340	Msa1316450	0.816462	5.462398e-52	-8.615850e-47
Msa0674480	Msa1316450	0.807287	5.442048e-50	-8.615850e-47
Msa0769690	Msa1316450	0.806585	7.658192e-50	-8.615850e-47
Msa0799970	Msa1316450	0.817602	3.029125e-52	-8.615850e-47
Msa1269990	Msa1316450	0.897682	1.109796e-76	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316450	MtrunA17_Chr8g0346551	96.654	269	6	2	7	272	1	269	0.0	526
Msa1316450	MtrunA17_Chr3g0127201	45.973	298	121	12	7	272	1	290	1.94e-68	213
Msa1316450	MtrunA17_Chr1g0188851	45.423	284	101	16	1	263	10	260	9.21e-52	171
Msa1316450	MtrunA17_Chr2g0326001	75.000	72	16	1	15	84	23	94	7.32e-34	124
Msa1316450	MtrunA17_Chr3g0117601	52.000	125	45	4	16	136	45	158	9.66e-31	117
Msa1316450	MtrunA17_Chr8g0374251	54.808	104	41	2	27	130	65	162	1.37e-30	117
Msa1316450	MtrunA17_Chr4g0031411	72.059	68	19	0	17	84	62	129	2.83e-30	115
Msa1316450	MtrunA17_Chr8g0367161	66.250	80	24	2	21	98	21	99	9.46e-30	114
Msa1316450	MtrunA17_Chr4g0010151	43.796	137	70	2	17	146	69	205	1.11e-29	114
Msa1316450	MtrunA17_Chr4g0030051	69.014	71	20	1	14	82	23	93	1.72e-29	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316450	AT3G61850.5	52.158	278	87	19	22	272	54	312	6.02e-67	211
Msa1316450	AT3G61850.4	51.625	277	90	18	22	272	66	324	9.91e-67	211
Msa1316450	AT3G61850.2	49.813	267	82	16	22	272	54	284	1.63e-64	203
Msa1316450	AT3G61850.3	49.813	267	82	16	22	272	54	284	1.63e-64	203
Msa1316450	AT3G61850.1	49.813	267	82	16	22	272	66	296	2.00e-64	204
Msa1316450	AT2G46590.1	43.408	311	105	13	21	272	59	357	2.92e-56	184
Msa1316450	AT2G46590.2	43.408	311	105	13	21	272	71	369	4.09e-56	184
Msa1316450	AT4G24060.1	38.907	311	124	15	19	272	40	341	7.62e-44	152
Msa1316450	AT4G00940.1	38.400	250	121	7	24	267	62	284	1.72e-40	142
Msa1316450	AT4G00940.3	38.400	250	121	7	24	267	62	284	1.72e-40	142

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Find 79 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAATTCATGAATAC+AGG	0.394951	8_4:+16751763	None:intergenic
AAGAGCAAATAAATTGTCCA+AGG	0.610950	8_4:-16752946	Msa1316450:CDS
AAGGAAATTCAACTGGATAT+TGG	0.307009	8_4:-16752259	Msa1316450:CDS
AAGGATTAGAGAAGAAAGCA+AGG	0.621824	8_4:-16752973	Msa1316450:CDS
AATAAACAGCTTTCTACAAG+TGG	0.552575	8_4:-16752311	Msa1316450:CDS
AATCAAGAGAAAGAAGTTGA+AGG	0.514653	8_4:-16752204	Msa1316450:three_prime_UTR
AATTATTGTTATTAGCATAA+GGG	0.416837	8_4:+16752510	None:intergenic
AATTCAACTGGATATTGGAA+TGG	0.543811	8_4:-16752254	Msa1316450:CDS
ACTAGGTTTAACTTCTTGCA+TGG	0.527857	8_4:+16752445	None:intergenic
ACTATATAGGTATATACTCA+TGG	0.523439	8_4:-16753026	Msa1316450:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATTCTTTCTTGCACTA+AGG	-	chr8_4:16751813-16751832	Msa1316450:three_prime_UTR	30.0%
TCAACATATATATAGATGGG+TGG	+	chr8_4:16752143-16752162	None:intergenic	30.0%
TATAGGTATATACTCATGGA+AGG	-	chr8_4:16752545-16752564	Msa1316450:CDS	30.0%
ATAGGTATATACTCATGGAA+GGG	-	chr8_4:16752546-16752565	Msa1316450:CDS	30.0%
AAGAGCAAATAAATTGTCCA+AGG	-	chr8_4:16752621-16752640	Msa1316450:CDS	30.0%
TGATGAACTATTATTAGGTG+TGG	+	chr8_4:16752813-16752832	None:intergenic	30.0%
TGAAAGATGTGAAACTTGTA+GGG	+	chr8_4:16752861-16752880	None:intergenic	30.0%
ATGAAAGATGTGAAACTTGT+AGG	+	chr8_4:16752862-16752881	None:intergenic	30.0%
TCTCAAAACCCTAAAATACA+AGG	-	chr8_4:16752881-16752900	Msa1316450:CDS	30.0%
TCAATTGAAAATCCAAGACT+AGG	+	chr8_4:16753142-16753161	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	16751691	16753898	16751691	ID=Msa1316450;Name=Msa1316450
chr8_4	mRNA	16751691	16753898	16751691	ID=Msa1316450-mRNA-1;Parent=Msa1316450;Name=Msa1316450-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0.5\|1\|0\|0\|2\|538\|272
chr8_4	exon	16751691	16753039	16751691	ID=Msa1316450-mRNA-1:exon:6255;Parent=Msa1316450-mRNA-1
chr8_4	exon	16753891	16753898	16753891	ID=Msa1316450-mRNA-1:exon:6254;Parent=Msa1316450-mRNA-1
chr8_4	CDS	16753891	16753898	16753891	ID=Msa1316450-mRNA-1:cds;Parent=Msa1316450-mRNA-1
chr8_4	CDS	16752229	16753039	16752229	ID=Msa1316450-mRNA-1:cds;Parent=Msa1316450-mRNA-1
chr8_4	three_prime_UTR	16751691	16752228	16751691	ID=Msa1316450-mRNA-1:three_prime_utr;Parent=Msa1316450-mRNA-1

Gene Sequence

>Msa1316450

ATGCTTGTGTATATACTCATGGAAGGGTTAGCTCCTAATTCATGTCCAAGGCAAGGATTAGAGAAGAAAGCAAGGCCACAAGAGCAAATAAATTGTCCAAGGTGCAATTCAACAAACACAAAATTTTGCTATTACAACAACTACAGTCTCACACAACCAAGATACTTTTGCAAGACATGTAGAAGGTATTGGACTGAAGGAGGATCTCTAAGAAATGTTCCTGTTGGAGGTGGTTCAAGAAAGAACAAGAAAATTCCTTCATCATTAGCCACACCTAATAATAGTTCATCAAAAATTCCTGACCTAAATCCACCAACCCTACAAGTTTCACATCTTTCATCTCAAAACCCTAAAATACAAGGAGGCCAAGATCTTAACCTAGCTTTTCCATCTATGGAAAACTATCATCATAATCATGGTATGCCATCCTCATATGTTGAGATGCATAACAATAATGAATCATCTTCTTCAGCTCTTGACCTACTTAGGTCAAGCATGGCATCTAGAGGCATAAACCCTTATGCTAATAACAATAATTCTTTGATGCCAAACTCAAATGCTATTTATCCATCTGGATTCACCATGCAAGAAGTTAAACCTAGTCTTGGATTTTCAATTGATGGAATTAATGGAAATAGATCATATGATCATGTTCAAGTTCAAGAAGGTGGTGGTGGTGGTGGAAGACTTTTGTTCCCATTTGGAGATGTTAATAATAAACAGCTTTCTACAAGTGGTGTTGAAGTGGAACACAATAAAGATCAACAAGGAAATTCAACTGGATATTGGAATGGAATGATGGGTGAAGGATCATGGTAA

Protein sequence

>Msa1316450

MLVYILMEGLAPNSCPRQGLEKKARPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKIPSSLATPNNSSSKIPDLNPPTLQVSHLSSQNPKIQGGQDLNLAFPSMENYHHNHGMPSSYVEMHNNNESSSSALDLLRSSMASRGINPYANNNNSLMPNSNAIYPSGFTMQEVKPSLGFSIDGINGNRSYDHVQVQEGGGGGGRLLFPFGDVNNKQLSTSGVEVEHNKDQQGNSTGYWNGMMGEGSW*