Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300840 | XP_003597150.1 | 87.226 | 274 | 13 | 5 | 1 | 252 | 1 | 274 | 2.27e-144 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300840 | sp|Q84TE9|DOF53_ARATH | 35.217 | 230 | 92 | 8 | 26 | 240 | 33 | 220 | 9.70e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300840 | G7IU51 | 87.226 | 274 | 13 | 5 | 1 | 252 | 1 | 274 | 1.08e-144 | 416 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0300840 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0300840 | 0.821068 | 4.915265e-53 | -8.615850e-47 |
| Msa0017930 | Msa0300840 | 0.806667 | 7.361418e-50 | -8.615850e-47 |
| Msa0042640 | Msa0300840 | 0.818825 | 1.601271e-52 | -8.615850e-47 |
| Msa0048510 | Msa0300840 | 0.813650 | 2.299273e-51 | -8.615850e-47 |
| Msa0077340 | Msa0300840 | 0.814858 | 1.243933e-51 | -8.615850e-47 |
| Msa0077560 | Msa0300840 | 0.813081 | 3.065768e-51 | -8.615850e-47 |
| Msa0094780 | Msa0300840 | 0.814270 | 1.678349e-51 | -8.615850e-47 |
| Msa0102240 | Msa0300840 | 0.831075 | 2.049769e-55 | -8.615850e-47 |
| Msa0125360 | Msa0300840 | 0.801443 | 8.982053e-49 | -8.615850e-47 |
| Msa0146930 | Msa0300840 | 0.803434 | 3.493292e-49 | -8.615850e-47 |
| Msa0187940 | Msa0300840 | 0.830732 | 2.488974e-55 | -8.615850e-47 |
| Msa0232090 | Msa0300840 | 0.803175 | 3.952512e-49 | -8.615850e-47 |
| Msa0235290 | Msa0300840 | 0.811004 | 8.695505e-51 | -8.615850e-47 |
| Msa0244640 | Msa0300840 | 0.814460 | 1.523625e-51 | -8.615850e-47 |
| Msa0244790 | Msa0300840 | 0.815581 | 8.589066e-52 | -8.615850e-47 |
| Msa0244890 | Msa0300840 | 0.826251 | 3.006363e-54 | -8.615850e-47 |
| Msa0244900 | Msa0300840 | 0.804026 | 2.631438e-49 | -8.615850e-47 |
| Msa0254260 | Msa0300840 | 0.800843 | 1.191406e-48 | -8.615850e-47 |
| Msa0263230 | Msa0300840 | 0.902197 | 1.239600e-78 | -8.615850e-47 |
| Msa0271540 | Msa0300840 | 0.812703 | 3.709211e-51 | -8.615850e-47 |
| Msa0283490 | Msa0300840 | 0.819930 | 8.966600e-53 | -8.615850e-47 |
| Msa0298980 | Msa0300840 | 0.831796 | 1.362578e-55 | -8.615850e-47 |
| Msa0300840 | Msa0310090 | 0.800254 | 1.571118e-48 | -8.615850e-47 |
| Msa0300840 | Msa0313900 | 0.810378 | 1.187306e-50 | -8.615850e-47 |
| Msa0300840 | Msa0338340 | 0.956835 | 1.152638e-114 | -8.615850e-47 |
| Msa0300840 | Msa0369420 | 0.803603 | 3.222219e-49 | -8.615850e-47 |
| Msa0300840 | Msa0375330 | -0.809449 | 1.881720e-50 | -8.615850e-47 |
| Msa0300840 | Msa0408380 | 0.812224 | 4.722169e-51 | -8.615850e-47 |
| Msa0300840 | Msa0412790 | 0.813202 | 2.884220e-51 | -8.615850e-47 |
| Msa0300840 | Msa0457560 | 0.814142 | 1.791008e-51 | -8.615850e-47 |
| Msa0300840 | Msa0483100 | 0.810245 | 1.268593e-50 | -8.615850e-47 |
| Msa0300840 | Msa0519750 | 0.800719 | 1.262873e-48 | -8.615850e-47 |
| Msa0300840 | Msa0519820 | 0.807491 | 4.925814e-50 | -8.615850e-47 |
| Msa0300840 | Msa0522150 | 0.806686 | 7.292135e-50 | -8.615850e-47 |
| Msa0300840 | Msa0528570 | 0.818044 | 2.407246e-52 | -8.615850e-47 |
| Msa0300840 | Msa0529030 | 0.805423 | 1.344662e-49 | -8.615850e-47 |
| Msa0300840 | Msa0538190 | 0.802230 | 6.191620e-49 | -8.615850e-47 |
| Msa0300840 | Msa0543560 | 0.802156 | 6.411576e-49 | -8.615850e-47 |
| Msa0300840 | Msa0555860 | -0.813307 | 2.735072e-51 | -8.615850e-47 |
| Msa0300840 | Msa0559650 | -0.817951 | 2.526869e-52 | -8.615850e-47 |
| Msa0300840 | Msa0583360 | -0.800652 | 1.303547e-48 | -8.615850e-47 |
| Msa0300840 | Msa0599420 | 0.810463 | 1.138498e-50 | -8.615850e-47 |
| Msa0300840 | Msa0614380 | 0.803217 | 3.872676e-49 | -8.615850e-47 |
| Msa0300840 | Msa0674480 | 0.815888 | 7.340616e-52 | -8.615850e-47 |
| Msa0300840 | Msa0674560 | 0.829403 | 5.249993e-55 | -8.615850e-47 |
| Msa0300840 | Msa0716890 | 0.832546 | 8.885894e-56 | -8.615850e-47 |
| Msa0300840 | Msa0733010 | 0.802185 | 6.326077e-49 | -8.615850e-47 |
| Msa0300840 | Msa0734250 | 0.853985 | 1.663073e-61 | -8.615850e-47 |
| Msa0300840 | Msa0754450 | 0.804652 | 1.948782e-49 | -8.615850e-47 |
| Msa0300840 | Msa0769300 | 0.814375 | 1.590473e-51 | -8.615850e-47 |
| Msa0300840 | Msa0773990 | 0.801554 | 8.525660e-49 | -8.615850e-47 |
| Msa0300840 | Msa0813160 | 0.817428 | 3.315505e-52 | -8.615850e-47 |
| Msa0300840 | Msa0815970 | 0.813571 | 2.392339e-51 | -8.615850e-47 |
| Msa0300840 | Msa0833530 | 0.811918 | 5.505693e-51 | -8.615850e-47 |
| Msa0300840 | Msa0881040 | 0.813714 | 2.225167e-51 | -8.615850e-47 |
| Msa0300840 | Msa0945030 | 0.803383 | 3.579438e-49 | -8.615850e-47 |
| Msa0300840 | Msa1106590 | 0.801899 | 7.241868e-49 | -8.615850e-47 |
| Msa0300840 | Msa1114780 | 0.827088 | 1.897704e-54 | -8.615850e-47 |
| Msa0300840 | Msa1116970 | 0.801764 | 7.719374e-49 | -8.615850e-47 |
| Msa0300840 | Msa1130060 | 0.805376 | 1.375513e-49 | -8.615850e-47 |
| Msa0300840 | Msa1165090 | 0.800039 | 1.737836e-48 | -8.615850e-47 |
| Msa0300840 | Msa1184890 | 0.856501 | 3.082455e-62 | -8.615850e-47 |
| Msa0300840 | Msa1190180 | 0.823083 | 1.676337e-53 | -8.615850e-47 |
| Msa0300840 | Msa1192560 | 0.804364 | 2.238359e-49 | -8.615850e-47 |
| Msa0300840 | Msa1192570 | 0.804108 | 2.530170e-49 | -8.615850e-47 |
| Msa0300840 | Msa1192590 | 0.802481 | 5.495480e-49 | -8.615850e-47 |
| Msa0300840 | Msa1219830 | 0.801109 | 1.051376e-48 | -8.615850e-47 |
| Msa0300840 | Msa1225860 | -0.803139 | 4.019478e-49 | -8.615850e-47 |
| Msa0300840 | Msa1258000 | 0.816807 | 4.571351e-52 | -8.615850e-47 |
| Msa0300840 | Msa1268290 | 0.806550 | 7.790555e-50 | -8.615850e-47 |
| Msa0300840 | Msa1316450 | 0.801141 | 1.035902e-48 | -8.615850e-47 |
| Msa0300840 | Msa1320670 | 0.800211 | 1.602751e-48 | -8.615850e-47 |
| Msa0300840 | Msa1341840 | 0.819684 | 1.020823e-52 | -8.615850e-47 |
| Msa0300840 | Msa1348170 | -0.816575 | 5.152264e-52 | -8.615850e-47 |
| Msa0300840 | Msa1356600 | -0.850558 | 1.571371e-60 | -8.615850e-47 |
| Msa0300840 | Msa1365820 | 0.818816 | 1.609086e-52 | -8.615850e-47 |
| Msa0300840 | Msa1368390 | 0.804301 | 2.307420e-49 | -8.615850e-47 |
| Msa0300840 | Msa1372040 | 0.801372 | 9.290004e-49 | -8.615850e-47 |
| Msa0300840 | Msa1401670 | 0.807247 | 5.549433e-50 | -8.615850e-47 |
| Msa0300840 | Msa1403710 | 0.804248 | 2.366694e-49 | -8.615850e-47 |
| Msa0300840 | Msa1405460 | 0.808527 | 2.964901e-50 | -8.615850e-47 |
| Msa0300840 | Msa1415540 | 0.816350 | 5.787210e-52 | -8.615850e-47 |
| Msa0300840 | Msa1429070 | 0.803104 | 4.087321e-49 | -8.615850e-47 |
| Msa0300840 | Msa1434220 | 0.830373 | 3.046921e-55 | -8.615850e-47 |
| Msa0300840 | Msa1439650 | 0.817754 | 2.798914e-52 | -8.615850e-47 |
| Msa0300840 | Msa1440900 | 0.802671 | 5.023056e-49 | -8.615850e-47 |
| Msa0300840 | Msa1448680 | 0.829517 | 4.923913e-55 | -8.615850e-47 |
| Msa0300840 | Msa1461370 | 0.808313 | 3.292872e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300840 | MtrunA17_Chr2g0326001 | 87.226 | 274 | 13 | 5 | 1 | 252 | 1 | 274 | 2.09e-148 | 416 |
| Msa0300840 | MtrunA17_Chr4g0030051 | 48.339 | 271 | 78 | 13 | 17 | 248 | 18 | 265 | 1.48e-51 | 169 |
| Msa0300840 | MtrunA17_Chr3g0127201 | 69.118 | 68 | 15 | 2 | 29 | 90 | 16 | 83 | 1.76e-24 | 99.0 |
| Msa0300840 | MtrunA17_Chr2g0328021 | 36.943 | 157 | 76 | 6 | 8 | 158 | 31 | 170 | 1.16e-21 | 91.3 |
| Msa0300840 | MtrunA17_Chr1g0188851 | 50.549 | 91 | 35 | 4 | 8 | 88 | 7 | 97 | 1.30e-21 | 91.3 |
| Msa0300840 | MtrunA17_Chr8g0346551 | 51.515 | 99 | 28 | 5 | 23 | 110 | 9 | 98 | 1.44e-21 | 90.5 |
| Msa0300840 | MtrunA17_Chr3g0126201 | 61.972 | 71 | 21 | 2 | 24 | 88 | 35 | 105 | 2.36e-20 | 88.6 |
| Msa0300840 | MtrunA17_Chr4g0010151 | 44.186 | 129 | 44 | 4 | 7 | 120 | 62 | 177 | 2.41e-20 | 88.6 |
| Msa0300840 | MtrunA17_Chr3g0117601 | 45.926 | 135 | 54 | 7 | 11 | 134 | 29 | 155 | 2.78e-20 | 88.2 |
| Msa0300840 | MtrunA17_Chr4g0031411 | 53.261 | 92 | 30 | 4 | 22 | 100 | 57 | 148 | 5.81e-20 | 87.4 |
| Msa0300840 | MtrunA17_Chr4g0047001 | 59.155 | 71 | 23 | 2 | 42 | 106 | 57 | 127 | 3.30e-19 | 85.9 |
| Msa0300840 | MtrunA17_Chr8g0367161 | 47.126 | 87 | 40 | 2 | 29 | 109 | 21 | 107 | 1.97e-18 | 83.2 |
| Msa0300840 | MtrunA17_Chr8g0374251 | 58.209 | 67 | 22 | 2 | 37 | 97 | 65 | 131 | 8.78e-18 | 81.3 |
| Msa0300840 | MtrunA17_Chr8g0374111 | 52.874 | 87 | 32 | 4 | 11 | 90 | 1 | 85 | 1.28e-17 | 79.3 |
| Msa0300840 | MtrunA17_Chr1g0177251 | 66.667 | 54 | 12 | 1 | 41 | 88 | 13 | 66 | 3.96e-17 | 79.0 |
| Msa0300840 | MtrunA17_Chr7g0237921 | 53.425 | 73 | 28 | 2 | 22 | 88 | 58 | 130 | 4.06e-17 | 79.3 |
| Msa0300840 | MtrunA17_Chr5g0411951 | 63.636 | 55 | 14 | 2 | 36 | 84 | 39 | 93 | 1.59e-16 | 77.8 |
| Msa0300840 | MtrunA17_Chr2g0282441 | 62.069 | 58 | 13 | 3 | 34 | 85 | 22 | 76 | 1.86e-16 | 77.4 |
| Msa0300840 | MtrunA17_Chr3g0092111 | 56.164 | 73 | 25 | 3 | 26 | 92 | 123 | 194 | 2.45e-16 | 77.8 |
| Msa0300840 | MtrunA17_Chr2g0282051 | 66.667 | 57 | 12 | 2 | 38 | 88 | 44 | 99 | 2.69e-16 | 76.3 |
| Msa0300840 | MtrunA17_Chr7g0223311 | 60.000 | 65 | 20 | 2 | 39 | 97 | 76 | 140 | 3.30e-16 | 77.0 |
| Msa0300840 | MtrunA17_Chr4g0047761 | 70.175 | 57 | 10 | 3 | 38 | 88 | 70 | 125 | 7.24e-16 | 75.9 |
| Msa0300840 | MtrunA17_Chr7g0217581 | 50.000 | 84 | 28 | 3 | 21 | 90 | 205 | 288 | 1.50e-15 | 75.9 |
| Msa0300840 | MtrunA17_Chr8g0341671 | 56.944 | 72 | 24 | 3 | 28 | 92 | 8 | 79 | 2.92e-15 | 72.4 |
| Msa0300840 | MtrunA17_Chr5g0417571 | 55.072 | 69 | 24 | 3 | 28 | 90 | 127 | 194 | 4.80e-15 | 73.6 |
| Msa0300840 | MtrunA17_Chr4g0042481 | 53.846 | 65 | 24 | 2 | 29 | 87 | 111 | 175 | 1.71e-14 | 72.4 |
| Msa0300840 | MtrunA17_Chr4g0061761 | 62.264 | 53 | 14 | 2 | 38 | 84 | 38 | 90 | 2.24e-14 | 71.6 |
| Msa0300840 | MtrunA17_Chr8g0355261 | 51.429 | 70 | 27 | 3 | 26 | 89 | 105 | 173 | 2.65e-14 | 72.0 |
| Msa0300840 | MtrunA17_Chr6g0453321 | 54.839 | 62 | 22 | 2 | 35 | 90 | 131 | 192 | 5.56e-14 | 70.9 |
| Msa0300840 | MtrunA17_Chr6g0460721 | 43.750 | 80 | 38 | 3 | 15 | 88 | 65 | 143 | 6.88e-14 | 70.1 |
| Msa0300840 | MtrunA17_Chr7g0254161 | 54.237 | 59 | 21 | 2 | 35 | 87 | 96 | 154 | 8.12e-14 | 70.5 |
| Msa0300840 | MtrunA17_Chr2g0282511 | 66.000 | 50 | 11 | 2 | 39 | 82 | 44 | 93 | 8.42e-14 | 69.7 |
| Msa0300840 | MtrunA17_Chr2g0308011 | 68.000 | 50 | 10 | 2 | 39 | 82 | 36 | 85 | 1.02e-13 | 68.2 |
| Msa0300840 | MtrunA17_Chr6g0460731 | 37.097 | 124 | 68 | 4 | 15 | 132 | 72 | 191 | 1.13e-13 | 69.7 |
| Msa0300840 | MtrunA17_Chr5g0417551 | 42.718 | 103 | 50 | 4 | 8 | 103 | 96 | 196 | 9.89e-13 | 67.0 |
| Msa0300840 | MtrunA17_Chr2g0283811 | 54.386 | 57 | 20 | 2 | 37 | 87 | 44 | 100 | 3.94e-12 | 62.8 |
| Msa0300840 | MtrunA17_Chr5g0417561 | 51.351 | 74 | 30 | 2 | 36 | 103 | 115 | 188 | 4.20e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300840 | AT5G60200.1 | 35.217 | 230 | 92 | 8 | 26 | 240 | 33 | 220 | 9.86e-30 | 112 |
| Msa0300840 | AT2G28510.1 | 41.071 | 224 | 97 | 11 | 38 | 240 | 46 | 255 | 1.68e-27 | 107 |
| Msa0300840 | AT3G45610.1 | 32.540 | 252 | 105 | 10 | 11 | 239 | 1 | 210 | 1.12e-26 | 103 |
| Msa0300840 | AT4G24060.1 | 65.152 | 66 | 17 | 2 | 29 | 88 | 42 | 107 | 6.96e-22 | 93.2 |
| Msa0300840 | AT3G55370.1 | 52.632 | 95 | 33 | 4 | 12 | 99 | 52 | 141 | 3.19e-21 | 90.9 |
| Msa0300840 | AT3G55370.3 | 52.632 | 95 | 33 | 4 | 12 | 99 | 97 | 186 | 4.12e-21 | 91.3 |
| Msa0300840 | AT3G55370.2 | 52.632 | 95 | 33 | 4 | 12 | 99 | 52 | 141 | 4.29e-21 | 91.3 |
| Msa0300840 | AT3G61850.1 | 35.747 | 221 | 102 | 11 | 33 | 221 | 67 | 279 | 2.41e-20 | 88.2 |
| Msa0300840 | AT3G61850.2 | 35.023 | 217 | 109 | 9 | 33 | 221 | 55 | 267 | 2.67e-20 | 87.8 |
| Msa0300840 | AT3G61850.3 | 35.023 | 217 | 109 | 9 | 33 | 221 | 55 | 267 | 2.67e-20 | 87.8 |
| Msa0300840 | AT3G61850.5 | 53.571 | 84 | 29 | 2 | 33 | 110 | 55 | 134 | 5.97e-20 | 87.4 |
| Msa0300840 | AT3G61850.4 | 53.571 | 84 | 29 | 2 | 33 | 110 | 67 | 146 | 6.63e-20 | 87.4 |
| Msa0300840 | AT2G37590.1 | 54.054 | 74 | 28 | 2 | 22 | 89 | 71 | 144 | 2.71e-19 | 85.9 |
| Msa0300840 | AT5G60850.1 | 62.500 | 72 | 17 | 3 | 37 | 98 | 48 | 119 | 3.27e-19 | 85.1 |
| Msa0300840 | AT5G02460.1 | 63.934 | 61 | 16 | 2 | 34 | 88 | 89 | 149 | 7.85e-19 | 85.1 |
| Msa0300840 | AT1G64620.1 | 60.656 | 61 | 18 | 1 | 29 | 83 | 38 | 98 | 1.04e-17 | 81.6 |
| Msa0300840 | AT4G00940.1 | 61.667 | 60 | 17 | 1 | 35 | 88 | 63 | 122 | 1.20e-17 | 80.9 |
| Msa0300840 | AT4G00940.3 | 61.667 | 60 | 17 | 1 | 35 | 88 | 63 | 122 | 1.20e-17 | 80.9 |
| Msa0300840 | AT4G00940.2 | 61.667 | 60 | 17 | 1 | 35 | 88 | 63 | 122 | 1.20e-17 | 80.9 |
| Msa0300840 | AT5G65590.1 | 53.659 | 82 | 28 | 3 | 24 | 95 | 21 | 102 | 1.29e-17 | 80.9 |
| Msa0300840 | AT1G51700.1 | 48.421 | 95 | 39 | 4 | 20 | 107 | 16 | 107 | 2.73e-17 | 77.8 |
| Msa0300840 | AT2G46590.1 | 48.800 | 125 | 52 | 4 | 29 | 143 | 59 | 181 | 6.60e-17 | 79.3 |
| Msa0300840 | AT2G46590.2 | 48.800 | 125 | 52 | 4 | 29 | 143 | 71 | 193 | 7.42e-17 | 79.3 |
| Msa0300840 | AT3G52440.1 | 60.000 | 65 | 18 | 2 | 37 | 95 | 22 | 84 | 9.40e-17 | 77.4 |
| Msa0300840 | AT3G52440.2 | 60.000 | 65 | 18 | 2 | 37 | 95 | 41 | 103 | 9.69e-17 | 77.8 |
| Msa0300840 | AT1G07640.2 | 43.678 | 87 | 42 | 2 | 9 | 88 | 45 | 131 | 9.91e-17 | 78.6 |
| Msa0300840 | AT1G07640.3 | 43.678 | 87 | 42 | 2 | 9 | 88 | 53 | 139 | 1.18e-16 | 78.6 |
| Msa0300840 | AT2G28810.2 | 62.500 | 56 | 15 | 2 | 36 | 85 | 73 | 128 | 2.13e-16 | 77.8 |
| Msa0300840 | AT2G28810.1 | 62.500 | 56 | 15 | 2 | 36 | 85 | 90 | 145 | 2.89e-16 | 77.4 |
| Msa0300840 | AT5G62940.1 | 57.377 | 61 | 20 | 2 | 30 | 84 | 63 | 123 | 3.63e-16 | 77.4 |
| Msa0300840 | AT1G21340.1 | 63.158 | 57 | 15 | 2 | 39 | 89 | 37 | 93 | 3.64e-16 | 76.3 |
| Msa0300840 | AT1G07640.1 | 50.667 | 75 | 30 | 2 | 21 | 88 | 1 | 75 | 7.19e-16 | 75.5 |
| Msa0300840 | AT1G28310.1 | 65.455 | 55 | 13 | 2 | 40 | 88 | 27 | 81 | 1.44e-15 | 75.1 |
| Msa0300840 | AT1G28310.2 | 65.455 | 55 | 13 | 2 | 40 | 88 | 51 | 105 | 1.66e-15 | 75.1 |
| Msa0300840 | AT5G62430.1 | 52.000 | 75 | 29 | 3 | 26 | 93 | 39 | 113 | 2.21e-15 | 74.3 |
| Msa0300840 | AT4G21050.1 | 50.725 | 69 | 26 | 2 | 33 | 95 | 19 | 85 | 8.25e-15 | 71.6 |
| Msa0300840 | AT5G39660.3 | 48.810 | 84 | 31 | 4 | 22 | 99 | 124 | 201 | 9.11e-15 | 73.6 |
| Msa0300840 | AT5G39660.1 | 48.810 | 84 | 31 | 4 | 22 | 99 | 124 | 201 | 9.11e-15 | 73.6 |
| Msa0300840 | AT5G39660.2 | 48.810 | 84 | 31 | 4 | 22 | 99 | 124 | 201 | 9.11e-15 | 73.6 |
| Msa0300840 | AT5G66940.1 | 54.930 | 71 | 25 | 3 | 32 | 96 | 25 | 94 | 1.03e-14 | 71.6 |
| Msa0300840 | AT3G47500.1 | 58.065 | 62 | 20 | 2 | 35 | 90 | 105 | 166 | 1.06e-14 | 73.6 |
| Msa0300840 | AT3G21270.1 | 66.038 | 53 | 12 | 2 | 40 | 86 | 29 | 81 | 1.85e-14 | 70.5 |
| Msa0300840 | AT3G50410.1 | 56.667 | 60 | 20 | 2 | 37 | 90 | 27 | 86 | 2.20e-14 | 71.2 |
| Msa0300840 | AT4G38000.1 | 52.308 | 65 | 24 | 3 | 30 | 87 | 31 | 95 | 4.93e-14 | 70.1 |
| Msa0300840 | AT1G69570.1 | 55.932 | 59 | 20 | 2 | 35 | 87 | 127 | 185 | 9.95e-14 | 70.5 |
| Msa0300840 | AT1G26790.1 | 45.946 | 74 | 34 | 2 | 20 | 87 | 91 | 164 | 1.32e-13 | 70.1 |
| Msa0300840 | AT1G47655.1 | 57.895 | 57 | 18 | 2 | 32 | 82 | 21 | 77 | 2.56e-13 | 67.4 |
| Msa0300840 | AT4G21080.1 | 37.143 | 105 | 59 | 2 | 17 | 114 | 1 | 105 | 7.03e-13 | 66.6 |
| Msa0300840 | AT2G34140.1 | 52.542 | 59 | 22 | 2 | 35 | 87 | 53 | 111 | 7.75e-13 | 65.1 |
| Msa0300840 | AT1G29160.1 | 52.542 | 59 | 22 | 2 | 35 | 87 | 57 | 115 | 2.24e-12 | 63.9 |
| Msa0300840 | AT4G21040.1 | 43.590 | 78 | 37 | 2 | 17 | 87 | 1 | 78 | 2.53e-11 | 62.0 |
Find 72 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCATAAACCATGGATTTA+TGG | 0.149923 | 2_3:+56417263 | Msa0300840:CDS |
| GCTTGTTCTGGTTGAGGTTT+TGG | 0.170758 | 2_3:-56416859 | None:intergenic |
| ATCCATAAATCCATGGTTTA+TGG | 0.190178 | 2_3:-56417265 | None:intergenic |
| TTCCATTACCAACCTCATTT+TGG | 0.230948 | 2_3:+56415786 | Msa0300840:five_prime_UTR |
| GATTCATTCATCTTATTGTT+TGG | 0.284874 | 2_3:+56415934 | Msa0300840:five_prime_UTR |
| ATTCCTTAGGGTTCCTCCTT+TGG | 0.285324 | 2_3:-56416989 | None:intergenic |
| ATTAGAAGTGGATTATTTCT+TGG | 0.296220 | 2_3:+56417291 | Msa0300840:CDS |
| GGACAGTTCAAAGCTTGTTC+TGG | 0.303186 | 2_3:-56416871 | None:intergenic |
| GAATGAGGGAGATTGTTAAA+TGG | 0.311392 | 2_3:-56417111 | None:intergenic |
| GTTGTTATAGTAACAGAATT+TGG | 0.321643 | 2_3:-56416914 | None:intergenic |
| AGTGGATTATTTCTTGGAAA+TGG | 0.336042 | 2_3:+56417297 | Msa0300840:CDS |
| GGGTTTCCATGGCAGCTAAA+TGG | 0.341098 | 2_3:+56417525 | Msa0300840:CDS |
| TATAGGTAGGTATATATAAT+AGG | 0.347193 | 2_3:-56415751 | None:intergenic |
| ATGTATGGTGTGTATGGAAA+TGG | 0.354795 | 2_3:+56417348 | Msa0300840:CDS |
| TCACTCTCTCTCTTGGGATT+GGG | 0.359287 | 2_3:+56415724 | None:intergenic |
| CAAGATTTGCAGAAATATCT+TGG | 0.375372 | 2_3:-56416952 | None:intergenic |
| ATTGTTAATTTCTTGATCAT+AGG | 0.377525 | 2_3:-56417445 | None:intergenic |
| AAAGCAATCATGTGGACAAA+TGG | 0.379363 | 2_3:+56417185 | Msa0300840:CDS |
| ATCACTCTCTCTCTTGGGAT+TGG | 0.387605 | 2_3:+56415723 | None:intergenic |
| CATTCATCTTATTGTTTGGA+TGG | 0.393564 | 2_3:+56415938 | Msa0300840:exon |
| AATGAGGGAGATTGTTAAAT+GGG | 0.410826 | 2_3:-56417110 | None:intergenic |
| TCATCAATGGAAAACATGTT+AGG | 0.412061 | 2_3:+56416808 | Msa0300840:CDS |
| TTGTTAATTTCTTGATCATA+GGG | 0.429595 | 2_3:-56417444 | None:intergenic |
| CAGAATATGTATGGTGTGTA+TGG | 0.444454 | 2_3:+56417342 | Msa0300840:intron |
| TTCAAAGCTTGTTCTGGTTG+AGG | 0.444926 | 2_3:-56416865 | None:intergenic |
| CACCAACAGGAACATTCCTT+AGG | 0.445109 | 2_3:-56417002 | None:intergenic |
| TTGTTAAATGGGTTGAGATT+TGG | 0.446377 | 2_3:-56417099 | None:intergenic |
| TGGAAGCAAAGGTGCTGTAT+AGG | 0.448996 | 2_3:-56415768 | None:intergenic |
| TGTATGGTGTGTATGGAAAT+GGG | 0.450678 | 2_3:+56417349 | Msa0300840:CDS |
| AAGCAATCATGTGGACAAAT+GGG | 0.452916 | 2_3:+56417186 | Msa0300840:CDS |
| TAATGCTAATGCAAAATCAT+TGG | 0.457564 | 2_3:-56417151 | None:intergenic |
| TCCTTCTTGTGGACAACCTC+AGG | 0.458211 | 2_3:+56415962 | Msa0300840:CDS |
| GTGTTGGTTGAGTTGCATCT+TGG | 0.458480 | 2_3:-56416892 | None:intergenic |
| AATAATGTTCAGAATATGTA+TGG | 0.460682 | 2_3:+56417333 | Msa0300840:intron |
| ATCCAAAATGAGGTTGGTAA+TGG | 0.464507 | 2_3:-56415788 | None:intergenic |
| TTTCTGCATCCACCACCAAC+AGG | 0.469608 | 2_3:-56417015 | None:intergenic |
| GTTCCTCCATTTAGCTGCCA+TGG | 0.475903 | 2_3:-56417531 | None:intergenic |
| ATGCAAATAACAATGCTTGT+GGG | 0.493320 | 2_3:+56417400 | Msa0300840:CDS |
| AATGTCGAGCCAATCATCAA+TGG | 0.508256 | 2_3:+56416795 | Msa0300840:CDS |
| GACAATGGTGAAGTAAATAG+TGG | 0.512707 | 2_3:+56417372 | Msa0300840:CDS |
| AGGAATGTTCCTGTTGGTGG+TGG | 0.512948 | 2_3:+56417006 | Msa0300840:CDS |
| TTTATGGATGCAATTAGAAG+TGG | 0.515360 | 2_3:+56417279 | Msa0300840:CDS |
| CTAAGGAATGTTCCTGTTGG+TGG | 0.527080 | 2_3:+56417003 | Msa0300840:CDS |
| ATAGTAACAGAATTTGGTGT+TGG | 0.529356 | 2_3:-56416908 | None:intergenic |
| TAATTGCATCCATAAATCCA+TGG | 0.534717 | 2_3:-56417272 | None:intergenic |
| GTTTGGATGGATCCTTCTTG+TGG | 0.537133 | 2_3:+56415951 | Msa0300840:exon |
| ACCAACAGGAACATTCCTTA+GGG | 0.541748 | 2_3:-56417001 | None:intergenic |
| AATGCAAATAACAATGCTTG+TGG | 0.543604 | 2_3:+56417399 | Msa0300840:CDS |
| GTGCTTGGAGTGAAACTGAA+TGG | 0.547945 | 2_3:-56415890 | None:intergenic |
| TATGATCATAAGATGAATGA+GGG | 0.553710 | 2_3:-56417125 | None:intergenic |
| AGCAAGAAATGTGCAGTGGA+AGG | 0.565157 | 2_3:+56417472 | Msa0300840:CDS |
| TTATGATCATAAGATGAATG+AGG | 0.565287 | 2_3:-56417126 | None:intergenic |
| ACCTGAGGTTGTCCACAAGA+AGG | 0.573402 | 2_3:-56415963 | None:intergenic |
| ACCCTAAGGAATGTTCCTGT+TGG | 0.579058 | 2_3:+56417000 | Msa0300840:CDS |
| CATCATCATCATCTTCAAAG+AGG | 0.581905 | 2_3:+56417055 | Msa0300840:CDS |
| TGCAAATAACAATGCTTGTG+GGG | 0.582187 | 2_3:+56417401 | Msa0300840:CDS |
| TGTAGAAGGTATTGGACCAA+AGG | 0.585230 | 2_3:+56416973 | Msa0300840:intron |
| TGCTTGGAGTGAAACTGAAT+GGG | 0.586484 | 2_3:-56415889 | None:intergenic |
| CTCTTTGAAGATGATGATGA+TGG | 0.589822 | 2_3:-56417054 | None:intergenic |
| GGACCAAAGGAGGAACCCTA+AGG | 0.594931 | 2_3:+56416986 | Msa0300840:CDS |
| GAGGTTGGTAATGGAAGCAA+AGG | 0.595868 | 2_3:-56415779 | None:intergenic |
| GCAAGAAATGTGCAGTGGAA+GGG | 0.598256 | 2_3:+56417473 | Msa0300840:CDS |
| GTGTATGGAAATGGGGACAA+TGG | 0.598902 | 2_3:+56417357 | Msa0300840:CDS |
| AATCATTCAACCATAAACCA+TGG | 0.606118 | 2_3:+56417255 | Msa0300840:CDS |
| GCTAAATGGAGGAACAAACA+TGG | 0.611119 | 2_3:+56417539 | Msa0300840:CDS |
| AGAAGGTATTGGACCAAAGG+AGG | 0.622045 | 2_3:+56416976 | Msa0300840:intron |
| GTATGGTGTGTATGGAAATG+GGG | 0.629075 | 2_3:+56417350 | Msa0300840:CDS |
| AGCAAAGGTGCTGTATAGGT+AGG | 0.632763 | 2_3:-56415764 | None:intergenic |
| AGGCTTCAAAAGCAATCATG+TGG | 0.635965 | 2_3:+56417177 | Msa0300840:CDS |
| TTTCCATGGCAGCTAAATGG+AGG | 0.645564 | 2_3:+56417528 | Msa0300840:CDS |
| CTAAATGGAGGAACAAACAT+GGG | 0.651200 | 2_3:+56417540 | Msa0300840:CDS |
| GTGAAGCAAGAAATGTGCAG+TGG | 0.683660 | 2_3:+56417468 | Msa0300840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTAAAGTACTAAAAT+TGG | + | chr2_3:56416680-56416699 | Msa0300840:intron | 10.0% |
| !!! | TAAAATTAAAGTACTAAAAT+TGG | + | chr2_3:56416680-56416699 | Msa0300840:intron | 10.0% |
| !!! | AGAGACAAATTTTATTTTTT+TGG | - | chr2_3:56416642-56416661 | None:intergenic | 15.0% |
| !!! | TTAATTTTAACATTTAGCAA+CGG | - | chr2_3:56416669-56416688 | None:intergenic | 15.0% |
| !! | AATTATACACAAAATACAAT+TGG | - | chr2_3:56416709-56416728 | None:intergenic | 15.0% |
| !!! | TTGTATTTTGTGTATAATTT+TGG | + | chr2_3:56416710-56416729 | Msa0300840:intron | 15.0% |
| !!! | AGAGACAAATTTTATTTTTT+TGG | - | chr2_3:56416642-56416661 | None:intergenic | 15.0% |
| !!! | TTAATTTTAACATTTAGCAA+CGG | - | chr2_3:56416669-56416688 | None:intergenic | 15.0% |
| !! | AATTATACACAAAATACAAT+TGG | - | chr2_3:56416709-56416728 | None:intergenic | 15.0% |
| !!! | TTGTATTTTGTGTATAATTT+TGG | + | chr2_3:56416710-56416729 | Msa0300840:intron | 15.0% |
| !! | TATAGGTAGGTATATATAAT+AGG | - | chr2_3:56415754-56415773 | None:intergenic | 20.0% |
| !!! | AATATTATGTTTGAAGTTTG+AGG | + | chr2_3:56416058-56416077 | Msa0300840:intron | 20.0% |
| !!! | ATATTATGTTTGAAGTTTGA+GGG | + | chr2_3:56416059-56416078 | Msa0300840:intron | 20.0% |
| !!! | CAATATATTTTGTGTAAAGA+TGG | - | chr2_3:56416154-56416173 | None:intergenic | 20.0% |
| !! | AATTAGATATATAGAAGACA+TGG | - | chr2_3:56416273-56416292 | None:intergenic | 20.0% |
| !!! | TTGCAATTTATGTATTTTGT+TGG | - | chr2_3:56416379-56416398 | None:intergenic | 20.0% |
| !! | AGTTGAATCAAAGTTATAAT+AGG | - | chr2_3:56416598-56416617 | None:intergenic | 20.0% |
| !! | AATAATGTTCAGAATATGTA+TGG | + | chr2_3:56417333-56417352 | Msa0300840:intron | 20.0% |
| !! | TTGTTAATTTCTTGATCATA+GGG | - | chr2_3:56417447-56417466 | None:intergenic | 20.0% |
| !! | ATTGTTAATTTCTTGATCAT+AGG | - | chr2_3:56417448-56417467 | None:intergenic | 20.0% |
| !!! | ATTAGTGAAAGTAAAGTTTT+TGG | + | chr2_3:56417501-56417520 | Msa0300840:CDS | 20.0% |
| !! | TATAGGTAGGTATATATAAT+AGG | - | chr2_3:56415754-56415773 | None:intergenic | 20.0% |
| !!! | AATATTATGTTTGAAGTTTG+AGG | + | chr2_3:56416058-56416077 | Msa0300840:intron | 20.0% |
| !!! | ATATTATGTTTGAAGTTTGA+GGG | + | chr2_3:56416059-56416078 | Msa0300840:intron | 20.0% |
| !!! | CAATATATTTTGTGTAAAGA+TGG | - | chr2_3:56416154-56416173 | None:intergenic | 20.0% |
| !! | AATTAGATATATAGAAGACA+TGG | - | chr2_3:56416273-56416292 | None:intergenic | 20.0% |
| !!! | TTGCAATTTATGTATTTTGT+TGG | - | chr2_3:56416379-56416398 | None:intergenic | 20.0% |
| !! | AGTTGAATCAAAGTTATAAT+AGG | - | chr2_3:56416598-56416617 | None:intergenic | 20.0% |
| !! | AATAATGTTCAGAATATGTA+TGG | + | chr2_3:56417333-56417352 | Msa0300840:intron | 20.0% |
| !! | TTGTTAATTTCTTGATCATA+GGG | - | chr2_3:56417447-56417466 | None:intergenic | 20.0% |
| !! | ATTGTTAATTTCTTGATCAT+AGG | - | chr2_3:56417448-56417467 | None:intergenic | 20.0% |
| !!! | ATTAGTGAAAGTAAAGTTTT+TGG | + | chr2_3:56417501-56417520 | Msa0300840:CDS | 20.0% |
| ! | GATTCATTCATCTTATTGTT+TGG | + | chr2_3:56415934-56415953 | Msa0300840:five_prime_UTR | 25.0% |
| ! | TATACTTAAACTGCTCTTAT+GGG | - | chr2_3:56416114-56416133 | None:intergenic | 25.0% |
| ! | TTATACTTAAACTGCTCTTA+TGG | - | chr2_3:56416115-56416134 | None:intergenic | 25.0% |
| !! | AATTTATATGTCTTCTAGCT+TGG | + | chr2_3:56416289-56416308 | Msa0300840:intron | 25.0% |
| ! | ACAGTATAAAAGATGAAGAT+GGG | - | chr2_3:56416346-56416365 | None:intergenic | 25.0% |
| ! | AACAGTATAAAAGATGAAGA+TGG | - | chr2_3:56416347-56416366 | None:intergenic | 25.0% |
| ! | GAGTAATGTGTATTTGTATA+TGG | + | chr2_3:56416557-56416576 | Msa0300840:intron | 25.0% |
| !! | TTTTATTAGATTTGCACTCA+TGG | + | chr2_3:56416750-56416769 | Msa0300840:intron | 25.0% |
| ! | GTTGTTATAGTAACAGAATT+TGG | - | chr2_3:56416917-56416936 | None:intergenic | 25.0% |
| ! | TATGATCATAAGATGAATGA+GGG | - | chr2_3:56417128-56417147 | None:intergenic | 25.0% |
| ! | TTATGATCATAAGATGAATG+AGG | - | chr2_3:56417129-56417148 | None:intergenic | 25.0% |
| ! | TAATGCTAATGCAAAATCAT+TGG | - | chr2_3:56417154-56417173 | None:intergenic | 25.0% |
| !!! | ATTAGAAGTGGATTATTTCT+TGG | + | chr2_3:56417291-56417310 | Msa0300840:CDS | 25.0% |
| ! | GATTCATTCATCTTATTGTT+TGG | + | chr2_3:56415934-56415953 | Msa0300840:five_prime_UTR | 25.0% |
| ! | TATACTTAAACTGCTCTTAT+GGG | - | chr2_3:56416114-56416133 | None:intergenic | 25.0% |
| ! | TTATACTTAAACTGCTCTTA+TGG | - | chr2_3:56416115-56416134 | None:intergenic | 25.0% |
| !! | AATTTATATGTCTTCTAGCT+TGG | + | chr2_3:56416289-56416308 | Msa0300840:intron | 25.0% |
| ! | ACAGTATAAAAGATGAAGAT+GGG | - | chr2_3:56416346-56416365 | None:intergenic | 25.0% |
| ! | AACAGTATAAAAGATGAAGA+TGG | - | chr2_3:56416347-56416366 | None:intergenic | 25.0% |
| ! | GAGTAATGTGTATTTGTATA+TGG | + | chr2_3:56416557-56416576 | Msa0300840:intron | 25.0% |
| !! | TTTTATTAGATTTGCACTCA+TGG | + | chr2_3:56416750-56416769 | Msa0300840:intron | 25.0% |
| ! | GTTGTTATAGTAACAGAATT+TGG | - | chr2_3:56416917-56416936 | None:intergenic | 25.0% |
| ! | TATGATCATAAGATGAATGA+GGG | - | chr2_3:56417128-56417147 | None:intergenic | 25.0% |
| ! | TTATGATCATAAGATGAATG+AGG | - | chr2_3:56417129-56417148 | None:intergenic | 25.0% |
| ! | TAATGCTAATGCAAAATCAT+TGG | - | chr2_3:56417154-56417173 | None:intergenic | 25.0% |
| !!! | ATTAGAAGTGGATTATTTCT+TGG | + | chr2_3:56417291-56417310 | Msa0300840:CDS | 25.0% |
| TGAAAAATCCAAAATGAGGT+TGG | - | chr2_3:56415797-56415816 | None:intergenic | 30.0% | |
| AGAGTGAAAAATCCAAAATG+AGG | - | chr2_3:56415801-56415820 | None:intergenic | 30.0% | |
| TGGGAAAAAAGAAGAAGAAA+GGG | - | chr2_3:56415873-56415892 | None:intergenic | 30.0% | |
| ATGGGAAAAAAGAAGAAGAA+AGG | - | chr2_3:56415874-56415893 | None:intergenic | 30.0% | |
| CATTCATCTTATTGTTTGGA+TGG | + | chr2_3:56415938-56415957 | Msa0300840:exon | 30.0% | |
| TAGCTTGGAAATTGAAGTTA+GGG | + | chr2_3:56416304-56416323 | Msa0300840:intron | 30.0% | |
| ! | GAAGGTATATACTAGTACTT+AGG | - | chr2_3:56416413-56416432 | None:intergenic | 30.0% |
| !!! | AGTAGCACTTTTTTTGAAGA+AGG | - | chr2_3:56416431-56416450 | None:intergenic | 30.0% |
| TACTCACACAACAAAAGTTA+GGG | - | chr2_3:56416542-56416561 | None:intergenic | 30.0% | |
| TTACTCACACAACAAAAGTT+AGG | - | chr2_3:56416543-56416562 | None:intergenic | 30.0% | |
| !! | ACATGTTTTCCATTGATGAT+TGG | - | chr2_3:56416807-56416826 | None:intergenic | 30.0% |
| TCATCAATGGAAAACATGTT+AGG | + | chr2_3:56416808-56416827 | Msa0300840:CDS | 30.0% | |
| !! | ATAGTAACAGAATTTGGTGT+TGG | - | chr2_3:56416911-56416930 | None:intergenic | 30.0% |
| CAAGATTTGCAGAAATATCT+TGG | - | chr2_3:56416955-56416974 | None:intergenic | 30.0% | |
| ATTTCTGCAAATCTTGTAGA+AGG | + | chr2_3:56416959-56416978 | Msa0300840:intron | 30.0% | |
| !! | TTGTTAAATGGGTTGAGATT+TGG | - | chr2_3:56417102-56417121 | None:intergenic | 30.0% |
| AATGAGGGAGATTGTTAAAT+GGG | - | chr2_3:56417113-56417132 | None:intergenic | 30.0% | |
| ! | ATTTTGCATTAGCATTAGCT+AGG | + | chr2_3:56417157-56417176 | Msa0300840:CDS | 30.0% |
| AATCATTCAACCATAAACCA+TGG | + | chr2_3:56417255-56417274 | Msa0300840:CDS | 30.0% | |
| AACCATAAACCATGGATTTA+TGG | + | chr2_3:56417263-56417282 | Msa0300840:CDS | 30.0% | |
| ATCCATAAATCCATGGTTTA+TGG | - | chr2_3:56417268-56417287 | None:intergenic | 30.0% | |
| TAATTGCATCCATAAATCCA+TGG | - | chr2_3:56417275-56417294 | None:intergenic | 30.0% | |
| TTTATGGATGCAATTAGAAG+TGG | + | chr2_3:56417279-56417298 | Msa0300840:CDS | 30.0% | |
| !! | AGTGGATTATTTCTTGGAAA+TGG | + | chr2_3:56417297-56417316 | Msa0300840:CDS | 30.0% |
| AATGCAAATAACAATGCTTG+TGG | + | chr2_3:56417399-56417418 | Msa0300840:CDS | 30.0% | |
| ATGCAAATAACAATGCTTGT+GGG | + | chr2_3:56417400-56417419 | Msa0300840:CDS | 30.0% | |
| !! | AGTGAAAGTAAAGTTTTTGG+TGG | + | chr2_3:56417504-56417523 | Msa0300840:CDS | 30.0% |
| !!! | GTGAAAGTAAAGTTTTTGGT+GGG | + | chr2_3:56417505-56417524 | Msa0300840:CDS | 30.0% |
| TGAAAAATCCAAAATGAGGT+TGG | - | chr2_3:56415797-56415816 | None:intergenic | 30.0% | |
| AGAGTGAAAAATCCAAAATG+AGG | - | chr2_3:56415801-56415820 | None:intergenic | 30.0% | |
| TGGGAAAAAAGAAGAAGAAA+GGG | - | chr2_3:56415873-56415892 | None:intergenic | 30.0% | |
| ATGGGAAAAAAGAAGAAGAA+AGG | - | chr2_3:56415874-56415893 | None:intergenic | 30.0% | |
| CATTCATCTTATTGTTTGGA+TGG | + | chr2_3:56415938-56415957 | Msa0300840:exon | 30.0% | |
| TAGCTTGGAAATTGAAGTTA+GGG | + | chr2_3:56416304-56416323 | Msa0300840:intron | 30.0% | |
| ! | GAAGGTATATACTAGTACTT+AGG | - | chr2_3:56416413-56416432 | None:intergenic | 30.0% |
| !!! | AGTAGCACTTTTTTTGAAGA+AGG | - | chr2_3:56416431-56416450 | None:intergenic | 30.0% |
| TACTCACACAACAAAAGTTA+GGG | - | chr2_3:56416542-56416561 | None:intergenic | 30.0% | |
| TTACTCACACAACAAAAGTT+AGG | - | chr2_3:56416543-56416562 | None:intergenic | 30.0% | |
| !! | ACATGTTTTCCATTGATGAT+TGG | - | chr2_3:56416807-56416826 | None:intergenic | 30.0% |
| TCATCAATGGAAAACATGTT+AGG | + | chr2_3:56416808-56416827 | Msa0300840:CDS | 30.0% | |
| !! | ATAGTAACAGAATTTGGTGT+TGG | - | chr2_3:56416911-56416930 | None:intergenic | 30.0% |
| CAAGATTTGCAGAAATATCT+TGG | - | chr2_3:56416955-56416974 | None:intergenic | 30.0% | |
| ATTTCTGCAAATCTTGTAGA+AGG | + | chr2_3:56416959-56416978 | Msa0300840:intron | 30.0% | |
| !! | TTGTTAAATGGGTTGAGATT+TGG | - | chr2_3:56417102-56417121 | None:intergenic | 30.0% |
| AATGAGGGAGATTGTTAAAT+GGG | - | chr2_3:56417113-56417132 | None:intergenic | 30.0% | |
| ! | ATTTTGCATTAGCATTAGCT+AGG | + | chr2_3:56417157-56417176 | Msa0300840:CDS | 30.0% |
| AATCATTCAACCATAAACCA+TGG | + | chr2_3:56417255-56417274 | Msa0300840:CDS | 30.0% | |
| AACCATAAACCATGGATTTA+TGG | + | chr2_3:56417263-56417282 | Msa0300840:CDS | 30.0% | |
| ATCCATAAATCCATGGTTTA+TGG | - | chr2_3:56417268-56417287 | None:intergenic | 30.0% | |
| TAATTGCATCCATAAATCCA+TGG | - | chr2_3:56417275-56417294 | None:intergenic | 30.0% | |
| TTTATGGATGCAATTAGAAG+TGG | + | chr2_3:56417279-56417298 | Msa0300840:CDS | 30.0% | |
| !! | AGTGGATTATTTCTTGGAAA+TGG | + | chr2_3:56417297-56417316 | Msa0300840:CDS | 30.0% |
| AATGCAAATAACAATGCTTG+TGG | + | chr2_3:56417399-56417418 | Msa0300840:CDS | 30.0% | |
| ATGCAAATAACAATGCTTGT+GGG | + | chr2_3:56417400-56417419 | Msa0300840:CDS | 30.0% | |
| !! | AGTGAAAGTAAAGTTTTTGG+TGG | + | chr2_3:56417504-56417523 | Msa0300840:CDS | 30.0% |
| !!! | GTGAAAGTAAAGTTTTTGGT+GGG | + | chr2_3:56417505-56417524 | Msa0300840:CDS | 30.0% |
| ! | TTCCATTACCAACCTCATTT+TGG | + | chr2_3:56415786-56415805 | Msa0300840:five_prime_UTR | 35.0% |
| !! | ATCCAAAATGAGGTTGGTAA+TGG | - | chr2_3:56415791-56415810 | None:intergenic | 35.0% |
| GGGAAAAAAGAAGAAGAAAG+GGG | - | chr2_3:56415872-56415891 | None:intergenic | 35.0% | |
| !!! | AACTTTGTTTTGTGTGTGCT+TGG | - | chr2_3:56415908-56415927 | None:intergenic | 35.0% |
| GAAGAATATGTTAGCTAGCA+AGG | - | chr2_3:56416022-56416041 | None:intergenic | 35.0% | |
| GCTAGCTAACATATTCTTCA+TGG | + | chr2_3:56416023-56416042 | Msa0300840:intron | 35.0% | |
| CTAGCTTGGAAATTGAAGTT+AGG | + | chr2_3:56416303-56416322 | Msa0300840:intron | 35.0% | |
| !! | CTAGTACAAGTTTTCAAGAG+TGG | + | chr2_3:56416449-56416468 | Msa0300840:intron | 35.0% |
| ! | GCAAATCTTGTAGAAGGTAT+TGG | + | chr2_3:56416965-56416984 | Msa0300840:intron | 35.0% |
| ! | CTCTTTGAAGATGATGATGA+TGG | - | chr2_3:56417057-56417076 | None:intergenic | 35.0% |
| CATCATCATCATCTTCAAAG+AGG | + | chr2_3:56417055-56417074 | Msa0300840:CDS | 35.0% | |
| GAATGAGGGAGATTGTTAAA+TGG | - | chr2_3:56417114-56417133 | None:intergenic | 35.0% | |
| AAAGCAATCATGTGGACAAA+TGG | + | chr2_3:56417185-56417204 | Msa0300840:CDS | 35.0% | |
| AAGCAATCATGTGGACAAAT+GGG | + | chr2_3:56417186-56417205 | Msa0300840:CDS | 35.0% | |
| GATCATGATGCTTCAAATCT+AGG | + | chr2_3:56417216-56417235 | Msa0300840:intron | 35.0% | |
| GCTTCAAATCTAGGAAATTC+AGG | + | chr2_3:56417225-56417244 | Msa0300840:intron | 35.0% | |
| CAGAATATGTATGGTGTGTA+TGG | + | chr2_3:56417342-56417361 | Msa0300840:intron | 35.0% | |
| ATGTATGGTGTGTATGGAAA+TGG | + | chr2_3:56417348-56417367 | Msa0300840:CDS | 35.0% | |
| TGTATGGTGTGTATGGAAAT+GGG | + | chr2_3:56417349-56417368 | Msa0300840:CDS | 35.0% | |
| GACAATGGTGAAGTAAATAG+TGG | + | chr2_3:56417372-56417391 | Msa0300840:CDS | 35.0% | |
| TGCAAATAACAATGCTTGTG+GGG | + | chr2_3:56417401-56417420 | Msa0300840:CDS | 35.0% | |
| CTAAATGGAGGAACAAACAT+GGG | + | chr2_3:56417540-56417559 | Msa0300840:CDS | 35.0% | |
| ! | TTCCATTACCAACCTCATTT+TGG | + | chr2_3:56415786-56415805 | Msa0300840:five_prime_UTR | 35.0% |
| !! | ATCCAAAATGAGGTTGGTAA+TGG | - | chr2_3:56415791-56415810 | None:intergenic | 35.0% |
| GGGAAAAAAGAAGAAGAAAG+GGG | - | chr2_3:56415872-56415891 | None:intergenic | 35.0% | |
| !!! | AACTTTGTTTTGTGTGTGCT+TGG | - | chr2_3:56415908-56415927 | None:intergenic | 35.0% |
| GAAGAATATGTTAGCTAGCA+AGG | - | chr2_3:56416022-56416041 | None:intergenic | 35.0% | |
| GCTAGCTAACATATTCTTCA+TGG | + | chr2_3:56416023-56416042 | Msa0300840:intron | 35.0% | |
| CTAGCTTGGAAATTGAAGTT+AGG | + | chr2_3:56416303-56416322 | Msa0300840:intron | 35.0% | |
| !! | CTAGTACAAGTTTTCAAGAG+TGG | + | chr2_3:56416449-56416468 | Msa0300840:intron | 35.0% |
| ! | GCAAATCTTGTAGAAGGTAT+TGG | + | chr2_3:56416965-56416984 | Msa0300840:intron | 35.0% |
| ! | CTCTTTGAAGATGATGATGA+TGG | - | chr2_3:56417057-56417076 | None:intergenic | 35.0% |
| CATCATCATCATCTTCAAAG+AGG | + | chr2_3:56417055-56417074 | Msa0300840:CDS | 35.0% | |
| GAATGAGGGAGATTGTTAAA+TGG | - | chr2_3:56417114-56417133 | None:intergenic | 35.0% | |
| AAAGCAATCATGTGGACAAA+TGG | + | chr2_3:56417185-56417204 | Msa0300840:CDS | 35.0% | |
| AAGCAATCATGTGGACAAAT+GGG | + | chr2_3:56417186-56417205 | Msa0300840:CDS | 35.0% | |
| GATCATGATGCTTCAAATCT+AGG | + | chr2_3:56417216-56417235 | Msa0300840:intron | 35.0% | |
| GCTTCAAATCTAGGAAATTC+AGG | + | chr2_3:56417225-56417244 | Msa0300840:intron | 35.0% | |
| CAGAATATGTATGGTGTGTA+TGG | + | chr2_3:56417342-56417361 | Msa0300840:intron | 35.0% | |
| ATGTATGGTGTGTATGGAAA+TGG | + | chr2_3:56417348-56417367 | Msa0300840:CDS | 35.0% | |
| TGTATGGTGTGTATGGAAAT+GGG | + | chr2_3:56417349-56417368 | Msa0300840:CDS | 35.0% | |
| GACAATGGTGAAGTAAATAG+TGG | + | chr2_3:56417372-56417391 | Msa0300840:CDS | 35.0% | |
| TGCAAATAACAATGCTTGTG+GGG | + | chr2_3:56417401-56417420 | Msa0300840:CDS | 35.0% | |
| CTAAATGGAGGAACAAACAT+GGG | + | chr2_3:56417540-56417559 | Msa0300840:CDS | 35.0% | |
| TGCTTGGAGTGAAACTGAAT+GGG | - | chr2_3:56415892-56415911 | None:intergenic | 40.0% | |
| AATGTCGAGCCAATCATCAA+TGG | + | chr2_3:56416795-56416814 | Msa0300840:CDS | 40.0% | |
| ! | TTCAAAGCTTGTTCTGGTTG+AGG | - | chr2_3:56416868-56416887 | None:intergenic | 40.0% |
| !! | TGTAGAAGGTATTGGACCAA+AGG | + | chr2_3:56416973-56416992 | Msa0300840:intron | 40.0% |
| ACCAACAGGAACATTCCTTA+GGG | - | chr2_3:56417004-56417023 | None:intergenic | 40.0% | |
| AGGCTTCAAAAGCAATCATG+TGG | + | chr2_3:56417177-56417196 | Msa0300840:CDS | 40.0% | |
| GTATGGTGTGTATGGAAATG+GGG | + | chr2_3:56417350-56417369 | Msa0300840:CDS | 40.0% | |
| !!! | AAGTTTTTGGTGGGTTTCCA+TGG | + | chr2_3:56417514-56417533 | Msa0300840:CDS | 40.0% |
| GCTAAATGGAGGAACAAACA+TGG | + | chr2_3:56417539-56417558 | Msa0300840:CDS | 40.0% | |
| AAGTTGAATCTGCAAGACCA+TGG | + | chr2_3:56417565-56417584 | Msa0300840:CDS | 40.0% | |
| TGCTTGGAGTGAAACTGAAT+GGG | - | chr2_3:56415892-56415911 | None:intergenic | 40.0% | |
| AATGTCGAGCCAATCATCAA+TGG | + | chr2_3:56416795-56416814 | Msa0300840:CDS | 40.0% | |
| ! | TTCAAAGCTTGTTCTGGTTG+AGG | - | chr2_3:56416868-56416887 | None:intergenic | 40.0% |
| !! | TGTAGAAGGTATTGGACCAA+AGG | + | chr2_3:56416973-56416992 | Msa0300840:intron | 40.0% |
| ACCAACAGGAACATTCCTTA+GGG | - | chr2_3:56417004-56417023 | None:intergenic | 40.0% | |
| AGGCTTCAAAAGCAATCATG+TGG | + | chr2_3:56417177-56417196 | Msa0300840:CDS | 40.0% | |
| GTATGGTGTGTATGGAAATG+GGG | + | chr2_3:56417350-56417369 | Msa0300840:CDS | 40.0% | |
| !!! | AAGTTTTTGGTGGGTTTCCA+TGG | + | chr2_3:56417514-56417533 | Msa0300840:CDS | 40.0% |
| GCTAAATGGAGGAACAAACA+TGG | + | chr2_3:56417539-56417558 | Msa0300840:CDS | 40.0% | |
| !! | AGCAAAGGTGCTGTATAGGT+AGG | - | chr2_3:56415767-56415786 | None:intergenic | 45.0% |
| !! | TGGAAGCAAAGGTGCTGTAT+AGG | - | chr2_3:56415771-56415790 | None:intergenic | 45.0% |
| !! | GAGGTTGGTAATGGAAGCAA+AGG | - | chr2_3:56415782-56415801 | None:intergenic | 45.0% |
| GTGCTTGGAGTGAAACTGAA+TGG | - | chr2_3:56415893-56415912 | None:intergenic | 45.0% | |
| GTTTGGATGGATCCTTCTTG+TGG | + | chr2_3:56415951-56415970 | Msa0300840:exon | 45.0% | |
| CTAATGAGTAGTCCTACCTG+AGG | - | chr2_3:56415981-56416000 | None:intergenic | 45.0% | |
| CTCAGGTAGGACTACTCATT+AGG | + | chr2_3:56415979-56415998 | Msa0300840:intron | 45.0% | |
| !! | GCTTGTTCTGGTTGAGGTTT+TGG | - | chr2_3:56416862-56416881 | None:intergenic | 45.0% |
| ! | GGACAGTTCAAAGCTTGTTC+TGG | - | chr2_3:56416874-56416893 | None:intergenic | 45.0% |
| !! | GTGTTGGTTGAGTTGCATCT+TGG | - | chr2_3:56416895-56416914 | None:intergenic | 45.0% |
| !! | AGAAGGTATTGGACCAAAGG+AGG | + | chr2_3:56416976-56416995 | Msa0300840:intron | 45.0% |
| ATTCCTTAGGGTTCCTCCTT+TGG | - | chr2_3:56416992-56417011 | None:intergenic | 45.0% | |
| ACCCTAAGGAATGTTCCTGT+TGG | + | chr2_3:56417000-56417019 | Msa0300840:CDS | 45.0% | |
| CACCAACAGGAACATTCCTT+AGG | - | chr2_3:56417005-56417024 | None:intergenic | 45.0% | |
| CTAAGGAATGTTCCTGTTGG+TGG | + | chr2_3:56417003-56417022 | Msa0300840:CDS | 45.0% | |
| GTGTATGGAAATGGGGACAA+TGG | + | chr2_3:56417357-56417376 | Msa0300840:CDS | 45.0% | |
| GTGAAGCAAGAAATGTGCAG+TGG | + | chr2_3:56417468-56417487 | Msa0300840:CDS | 45.0% | |
| AGCAAGAAATGTGCAGTGGA+AGG | + | chr2_3:56417472-56417491 | Msa0300840:CDS | 45.0% | |
| GCAAGAAATGTGCAGTGGAA+GGG | + | chr2_3:56417473-56417492 | Msa0300840:CDS | 45.0% | |
| TTTCCATGGCAGCTAAATGG+AGG | + | chr2_3:56417528-56417547 | Msa0300840:CDS | 45.0% | |
| AATAGGCAATCCCAATCCCA+TGG | - | chr2_3:56415737-56415756 | None:intergenic | 45.0% | |
| !! | AGCAAAGGTGCTGTATAGGT+AGG | - | chr2_3:56415767-56415786 | None:intergenic | 45.0% |
| !! | TGGAAGCAAAGGTGCTGTAT+AGG | - | chr2_3:56415771-56415790 | None:intergenic | 45.0% |
| !! | GAGGTTGGTAATGGAAGCAA+AGG | - | chr2_3:56415782-56415801 | None:intergenic | 45.0% |
| GTGCTTGGAGTGAAACTGAA+TGG | - | chr2_3:56415893-56415912 | None:intergenic | 45.0% | |
| GTTTGGATGGATCCTTCTTG+TGG | + | chr2_3:56415951-56415970 | Msa0300840:exon | 45.0% | |
| CTAATGAGTAGTCCTACCTG+AGG | - | chr2_3:56415981-56416000 | None:intergenic | 45.0% | |
| CTCAGGTAGGACTACTCATT+AGG | + | chr2_3:56415979-56415998 | Msa0300840:intron | 45.0% | |
| !! | GCTTGTTCTGGTTGAGGTTT+TGG | - | chr2_3:56416862-56416881 | None:intergenic | 45.0% |
| ! | GGACAGTTCAAAGCTTGTTC+TGG | - | chr2_3:56416874-56416893 | None:intergenic | 45.0% |
| !! | GTGTTGGTTGAGTTGCATCT+TGG | - | chr2_3:56416895-56416914 | None:intergenic | 45.0% |
| !! | AGAAGGTATTGGACCAAAGG+AGG | + | chr2_3:56416976-56416995 | Msa0300840:intron | 45.0% |
| ATTCCTTAGGGTTCCTCCTT+TGG | - | chr2_3:56416992-56417011 | None:intergenic | 45.0% | |
| ACCCTAAGGAATGTTCCTGT+TGG | + | chr2_3:56417000-56417019 | Msa0300840:CDS | 45.0% | |
| CACCAACAGGAACATTCCTT+AGG | - | chr2_3:56417005-56417024 | None:intergenic | 45.0% | |
| CTAAGGAATGTTCCTGTTGG+TGG | + | chr2_3:56417003-56417022 | Msa0300840:CDS | 45.0% | |
| GTGTATGGAAATGGGGACAA+TGG | + | chr2_3:56417357-56417376 | Msa0300840:CDS | 45.0% | |
| GTGAAGCAAGAAATGTGCAG+TGG | + | chr2_3:56417468-56417487 | Msa0300840:CDS | 45.0% | |
| AGCAAGAAATGTGCAGTGGA+AGG | + | chr2_3:56417472-56417491 | Msa0300840:CDS | 45.0% | |
| GCAAGAAATGTGCAGTGGAA+GGG | + | chr2_3:56417473-56417492 | Msa0300840:CDS | 45.0% | |
| TTTCCATGGCAGCTAAATGG+AGG | + | chr2_3:56417528-56417547 | Msa0300840:CDS | 45.0% | |
| TCCTTCTTGTGGACAACCTC+AGG | + | chr2_3:56415962-56415981 | Msa0300840:CDS | 50.0% | |
| ACCTGAGGTTGTCCACAAGA+AGG | - | chr2_3:56415966-56415985 | None:intergenic | 50.0% | |
| TCTTGTGGACAACCTCAGGT+AGG | + | chr2_3:56415966-56415985 | Msa0300840:intron | 50.0% | |
| ! | AGGAATGTTCCTGTTGGTGG+TGG | + | chr2_3:56417006-56417025 | Msa0300840:CDS | 50.0% |
| TTTCTGCATCCACCACCAAC+AGG | - | chr2_3:56417018-56417037 | None:intergenic | 50.0% | |
| GGGTTTCCATGGCAGCTAAA+TGG | + | chr2_3:56417525-56417544 | Msa0300840:CDS | 50.0% | |
| GTTCCTCCATTTAGCTGCCA+TGG | - | chr2_3:56417534-56417553 | None:intergenic | 50.0% | |
| TCCTTCTTGTGGACAACCTC+AGG | + | chr2_3:56415962-56415981 | Msa0300840:CDS | 50.0% | |
| ACCTGAGGTTGTCCACAAGA+AGG | - | chr2_3:56415966-56415985 | None:intergenic | 50.0% | |
| TCTTGTGGACAACCTCAGGT+AGG | + | chr2_3:56415966-56415985 | Msa0300840:intron | 50.0% | |
| ! | AGGAATGTTCCTGTTGGTGG+TGG | + | chr2_3:56417006-56417025 | Msa0300840:CDS | 50.0% |
| TTTCTGCATCCACCACCAAC+AGG | - | chr2_3:56417018-56417037 | None:intergenic | 50.0% | |
| GGGTTTCCATGGCAGCTAAA+TGG | + | chr2_3:56417525-56417544 | Msa0300840:CDS | 50.0% | |
| GTTCCTCCATTTAGCTGCCA+TGG | - | chr2_3:56417534-56417553 | None:intergenic | 50.0% | |
| GGACCAAAGGAGGAACCCTA+AGG | + | chr2_3:56416986-56417005 | Msa0300840:CDS | 55.0% | |
| GGACCAAAGGAGGAACCCTA+AGG | + | chr2_3:56416986-56417005 | Msa0300840:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 56415737 | 56417584 | 56415737 | ID=Msa0300840;Name=Msa0300840 |
| chr2_3 | mRNA | 56415737 | 56417584 | 56415737 | ID=Msa0300840-mRNA-1;Parent=Msa0300840;Name=Msa0300840-mRNA-1;_AED=0.18;_eAED=0.18;_QI=220|0.2|0.16|1|0|0|6|0|252 |
| chr2_3 | exon | 56415737 | 56415983 | 56415737 | ID=Msa0300840-mRNA-1:exon:18075;Parent=Msa0300840-mRNA-1 |
| chr2_3 | exon | 56416793 | 56416940 | 56416793 | ID=Msa0300840-mRNA-1:exon:18076;Parent=Msa0300840-mRNA-1 |
| chr2_3 | exon | 56416952 | 56416973 | 56416952 | ID=Msa0300840-mRNA-1:exon:18077;Parent=Msa0300840-mRNA-1 |
| chr2_3 | exon | 56416981 | 56417207 | 56416981 | ID=Msa0300840-mRNA-1:exon:18078;Parent=Msa0300840-mRNA-1 |
| chr2_3 | exon | 56417247 | 56417338 | 56417247 | ID=Msa0300840-mRNA-1:exon:18079;Parent=Msa0300840-mRNA-1 |
| chr2_3 | exon | 56417345 | 56417584 | 56417345 | ID=Msa0300840-mRNA-1:exon:18080;Parent=Msa0300840-mRNA-1 |
| chr2_3 | five_prime_UTR | 56415737 | 56415956 | 56415737 | ID=Msa0300840-mRNA-1:five_prime_utr;Parent=Msa0300840-mRNA-1 |
| chr2_3 | CDS | 56415957 | 56415983 | 56415957 | ID=Msa0300840-mRNA-1:cds;Parent=Msa0300840-mRNA-1 |
| chr2_3 | CDS | 56416793 | 56416940 | 56416793 | ID=Msa0300840-mRNA-1:cds;Parent=Msa0300840-mRNA-1 |
| chr2_3 | CDS | 56416952 | 56416973 | 56416952 | ID=Msa0300840-mRNA-1:cds;Parent=Msa0300840-mRNA-1 |
| chr2_3 | CDS | 56416981 | 56417207 | 56416981 | ID=Msa0300840-mRNA-1:cds;Parent=Msa0300840-mRNA-1 |
| chr2_3 | CDS | 56417247 | 56417338 | 56417247 | ID=Msa0300840-mRNA-1:cds;Parent=Msa0300840-mRNA-1 |
| chr2_3 | CDS | 56417345 | 56417584 | 56417345 | ID=Msa0300840-mRNA-1:cds;Parent=Msa0300840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
