Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319770 | XP_013444953.1 | 92.326 | 430 | 30 | 2 | 1 | 427 | 1 | 430 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319770 | A0A072TQ72 | 92.326 | 430 | 30 | 2 | 1 | 427 | 1 | 430 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0828920 | Msa1319770 | 0.802869 | 4.571299e-49 | -8.615850e-47 |
| Msa1239080 | Msa1319770 | 0.870986 | 9.633638e-67 | -8.615850e-47 |
| Msa1280560 | Msa1319770 | 0.862285 | 5.647347e-64 | -8.615850e-47 |
| Msa0281360 | Msa1319770 | 0.805667 | 1.195201e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319770 | MtrunA17_Chr8g0350771 | 92.326 | 430 | 30 | 2 | 1 | 427 | 1 | 430 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319770 | AT4G00770.1 | 33.259 | 448 | 236 | 20 | 11 | 427 | 1 | 416 | 3.57e-38 | 144 |
Find 85 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTTCGGATGTACATATT+TGG | 0.190940 | 8_4:+23654707 | Msa1319770:three_prime_UTR |
| TTAAAATATTCACATGATTC+TGG | 0.219032 | 8_4:-23654769 | None:intergenic |
| ATCCTTCATCGTCCCTCTTT+TGG | 0.235252 | 8_4:-23654470 | None:intergenic |
| TCTTGGTGACCAATTTAAAA+TGG | 0.239183 | 8_4:-23652166 | None:intergenic |
| GAGAAACTTACTTTCAATAT+TGG | 0.253806 | 8_4:-23653749 | None:intergenic |
| AGGAAATCCTTCAACATTCT+TGG | 0.276822 | 8_4:-23652400 | None:intergenic |
| CTCTTTCACCTTTGCATCGT+TGG | 0.295512 | 8_4:-23652666 | None:intergenic |
| CAGTCCAGTTTCAGTTCTTC+GGG | 0.305819 | 8_4:+23653687 | Msa1319770:CDS |
| TTGGATGAAAATTTATACTA+TGG | 0.316942 | 8_4:+23654258 | Msa1319770:CDS |
| TTTCACCCCTAAAAGTATTT+CGG | 0.330567 | 8_4:+23654693 | Msa1319770:exon |
| GAGGAACATGAGTTTGAGTT+TGG | 0.334411 | 8_4:-23652433 | None:intergenic |
| ATTCGGTGGCATCGTTCGTT+GGG | 0.334833 | 8_4:+23652983 | Msa1319770:CDS |
| CTATAAATGATGATTGTTCT+TGG | 0.350469 | 8_4:-23652183 | None:intergenic |
| CTAGACTCTTGTATAGTAAA+AGG | 0.352096 | 8_4:-23652252 | None:intergenic |
| ACAGTCCAGTTTCAGTTCTT+CGG | 0.354473 | 8_4:+23653686 | Msa1319770:CDS |
| ATTTGAATGGAGTTGGTAAT+TGG | 0.359397 | 8_4:-23652490 | None:intergenic |
| GCAACCCGAAGAACTGAAAC+TGG | 0.366892 | 8_4:-23653691 | None:intergenic |
| GGAGCTAGATGAGATGGTTA+TGG | 0.368563 | 8_4:+23654629 | Msa1319770:CDS |
| GACATTCATCTAAGGTTATC+AGG | 0.371124 | 8_4:-23654230 | None:intergenic |
| CGAAAATCAAAAGGTGATAA+TGG | 0.400296 | 8_4:-23652784 | None:intergenic |
| TTTCAATATTGGCTAGGCTT+TGG | 0.406342 | 8_4:-23653738 | None:intergenic |
| ACTCATAAGTGGTGAATTGC+GGG | 0.412714 | 8_4:+23652291 | Msa1319770:five_prime_UTR |
| AGATGCTTATATCAAGGAAA+TGG | 0.417722 | 8_4:+23654575 | Msa1319770:CDS |
| CAATGAGAGACATTCATCTA+AGG | 0.425187 | 8_4:-23654238 | None:intergenic |
| TGATGATAACTTGCGTGATA+AGG | 0.429555 | 8_4:-23652626 | None:intergenic |
| TTGAGTTTGGATTATCGCTT+AGG | 0.432334 | 8_4:-23652420 | None:intergenic |
| TATGAGTACGTGAAGTTTCG+TGG | 0.432944 | 8_4:-23652275 | None:intergenic |
| GGACGATGAAGGATTTGAGT+TGG | 0.441325 | 8_4:+23654479 | Msa1319770:CDS |
| GATTCGGTGGCATCGTTCGT+TGG | 0.446796 | 8_4:+23652982 | Msa1319770:CDS |
| CATTCTTGGTCTTCTCTCCA+TGG | 0.454188 | 8_4:-23652386 | None:intergenic |
| TAATGAAAATTGCTGAGGAT+TGG | 0.457153 | 8_4:+23654505 | Msa1319770:CDS |
| CTTAGATGAATGTCTCTCAT+TGG | 0.457276 | 8_4:+23654239 | Msa1319770:CDS |
| CTGGACTGTGTTGTTCATCT+TGG | 0.457314 | 8_4:-23653672 | None:intergenic |
| CTTGGTGACCAATTTAAAAT+GGG | 0.458170 | 8_4:-23652165 | None:intergenic |
| TGAGATGGTTATGGAGATTG+AGG | 0.463953 | 8_4:+23654638 | Msa1319770:CDS |
| TGATGAGGAGCTAGATGAGA+TGG | 0.470146 | 8_4:+23654623 | Msa1319770:CDS |
| AAGGAAATGGATAGGAGAGA+TGG | 0.470909 | 8_4:+23654588 | Msa1319770:CDS |
| GGCATCGTTCGTTGGGGACA+AGG | 0.488211 | 8_4:+23652990 | Msa1319770:CDS |
| TGGTAGTGAGAGGATGGTGG+AGG | 0.494083 | 8_4:-23652599 | None:intergenic |
| AAAGGTGATAATGGCGGTGA+TGG | 0.497649 | 8_4:-23652775 | None:intergenic |
| AGAACATAAAGACGACGATA+AGG | 0.510127 | 8_4:+23654284 | Msa1319770:CDS |
| ATAGGAGAGATGGGTGGAGT+AGG | 0.513651 | 8_4:+23654598 | Msa1319770:CDS |
| TGAAGAAGAAGTTTGGATTG+AGG | 0.513683 | 8_4:+23654326 | Msa1319770:CDS |
| GAGAAGACCAAGAATGTTGA+AGG | 0.515311 | 8_4:+23652393 | Msa1319770:CDS |
| AGGAAATGGATAGGAGAGAT+GGG | 0.519654 | 8_4:+23654589 | Msa1319770:CDS |
| GGTTCGTGGTAGTGAGAGGA+TGG | 0.528255 | 8_4:-23652605 | None:intergenic |
| TCAAACTCATGTTCCTCAAG+TGG | 0.530393 | 8_4:+23652439 | Msa1319770:CDS |
| ACTTACTTTCAATATTGGCT+AGG | 0.530778 | 8_4:-23653744 | None:intergenic |
| GTAGCGACGGTGATTCTAGT+TGG | 0.532871 | 8_4:+23652863 | Msa1319770:CDS |
| AAACTTCACGTACTCATAAG+TGG | 0.540509 | 8_4:+23652280 | Msa1319770:five_prime_UTR |
| ACAAAACGCCGAAAATCAAA+AGG | 0.540830 | 8_4:-23652793 | None:intergenic |
| TCGTGGTAGTGAGAGGATGG+TGG | 0.542013 | 8_4:-23652602 | None:intergenic |
| TACTCATAAGTGGTGAATTG+CGG | 0.542143 | 8_4:+23652290 | Msa1319770:five_prime_UTR |
| TAATAAAGATGCTTATATCA+AGG | 0.544634 | 8_4:+23654569 | Msa1319770:CDS |
| AACCAAAAGAGGGACGATGA+AGG | 0.545300 | 8_4:+23654468 | Msa1319770:CDS |
| GAATGAAATGATAGAGTTGG+TGG | 0.554740 | 8_4:-23652128 | None:intergenic |
| ATGTGTGTGGTGGATTTGAA+TGG | 0.561044 | 8_4:-23652503 | None:intergenic |
| GTGGTGGATTTGAATGGAGT+TGG | 0.563939 | 8_4:-23652497 | None:intergenic |
| TAAAGACGACGATAAGGAAG+AGG | 0.567208 | 8_4:+23654290 | Msa1319770:CDS |
| AACTTGCGTGATAAGGTTCG+TGG | 0.577209 | 8_4:-23652619 | None:intergenic |
| TGGTTGTTGTATATCTCGAA+AGG | 0.580810 | 8_4:-23652743 | None:intergenic |
| AAGTGATTTGAATCCACTTG+AGG | 0.581121 | 8_4:-23652452 | None:intergenic |
| GTGGTAATAGAAACCAAAAG+AGG | 0.581169 | 8_4:+23654457 | Msa1319770:CDS |
| TGGGTGGAGTAGGTTTGATG+AGG | 0.582244 | 8_4:+23654608 | Msa1319770:CDS |
| CTTATATCAAGGAAATGGAT+AGG | 0.583522 | 8_4:+23654580 | Msa1319770:CDS |
| AACGACGACGTTGAAGAGAG+TGG | 0.586326 | 8_4:+23652925 | Msa1319770:CDS |
| GGAGATAATGAAAATTGCTG+AGG | 0.596531 | 8_4:+23654500 | Msa1319770:CDS |
| TGGTAATAGAAACCAAAAGA+GGG | 0.596867 | 8_4:+23654458 | Msa1319770:CDS |
| AGAACAAGCCAACGATGCAA+AGG | 0.601818 | 8_4:+23652658 | Msa1319770:CDS |
| TTCGGTGGCATCGTTCGTTG+GGG | 0.603222 | 8_4:+23652984 | Msa1319770:CDS |
| GGTAGTGAGAGGATGGTGGA+GGG | 0.606737 | 8_4:-23652598 | None:intergenic |
| AATGAATGAAATGATAGAGT+TGG | 0.610196 | 8_4:-23652131 | None:intergenic |
| ACTACTGCGACGACATGTTG+TGG | 0.619648 | 8_4:+23652835 | Msa1319770:CDS |
| GGCGGTGATGGAATCGTCGA+TGG | 0.622472 | 8_4:-23652763 | None:intergenic |
| ATAAGGTTCGTGGTAGTGAG+AGG | 0.628338 | 8_4:-23652609 | None:intergenic |
| AATCGAAATCGAAACCAGCA+CGG | 0.630644 | 8_4:+23652690 | Msa1319770:CDS |
| AGACGACGATAAGGAAGAGG+AGG | 0.638078 | 8_4:+23654293 | Msa1319770:CDS |
| TTGATGATGAATGTGTGTGG+TGG | 0.639119 | 8_4:-23652513 | None:intergenic |
| AAATGGATAGGAGAGATGGG+TGG | 0.646442 | 8_4:+23654592 | Msa1319770:CDS |
| AAATCAAAGACATCATACGT+TGG | 0.656713 | 8_4:+23652716 | Msa1319770:CDS |
| TGTTGTGGCAGTAGTAGCGA+CGG | 0.667464 | 8_4:+23652850 | Msa1319770:CDS |
| GGTGATTCTAGTTGGAGTGA+CGG | 0.678139 | 8_4:+23652871 | Msa1319770:CDS |
| ACAAAGAAGATTCAACACCA+TGG | 0.680203 | 8_4:+23652369 | Msa1319770:CDS |
| AAATCAAAAGGTGATAATGG+CGG | 0.694984 | 8_4:-23652781 | None:intergenic |
| ACTTTGATGATGAATGTGTG+TGG | 0.735624 | 8_4:-23652516 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTAAAGAAATAATGA+TGG | + | chr8_4:23653262-23653281 | Msa1319770:intron | 10.0% |
| !! | TCATAAAACAAAATAATTTA+TGG | + | chr8_4:23653403-23653422 | Msa1319770:intron | 10.0% |
| !!! | GTTTTTTATGGTTTTTATTA+GGG | - | chr8_4:23652548-23652567 | None:intergenic | 15.0% |
| !!! | TGTTTTTTATGGTTTTTATT+AGG | - | chr8_4:23652549-23652568 | None:intergenic | 15.0% |
| !! | TTCTTTATAGAAAAAAACAA+TGG | + | chr8_4:23653065-23653084 | Msa1319770:intron | 15.0% |
| !! | AATATTCTATCATATTCTAT+TGG | - | chr8_4:23653127-23653146 | None:intergenic | 15.0% |
| !! | TAGAATATGATAGAATATTA+TGG | + | chr8_4:23653128-23653147 | Msa1319770:intron | 15.0% |
| !!! | ACTTATTTTATTTTTTCTGT+CGG | + | chr8_4:23653303-23653322 | Msa1319770:intron | 15.0% |
| !! | ATTTGTGTTCTAATAATTTA+TGG | + | chr8_4:23653373-23653392 | Msa1319770:intron | 15.0% |
| !! | AAAAAATAACATTGTTAGTT+TGG | - | chr8_4:23653565-23653584 | None:intergenic | 15.0% |
| !!! | ATACTAATATGTTTGATTTT+TGG | + | chr8_4:23654144-23654163 | Msa1319770:intron | 15.0% |
| !!! | TGTCTAGATTTATTTTTGTA+AGG | - | chr8_4:23652323-23652342 | None:intergenic | 20.0% |
| !!! | TTGTTTTCTTCTTTTTTTGT+CGG | + | chr8_4:23652955-23652974 | Msa1319770:CDS | 20.0% |
| !! | AACTATAGTGCATAAAATAT+AGG | - | chr8_4:23653093-23653112 | None:intergenic | 20.0% |
| !!! | CATTGGTTAATTTAATTGAA+AGG | - | chr8_4:23653774-23653793 | None:intergenic | 20.0% |
| !! | TACAAAATTACTAATTGTGT+TGG | - | chr8_4:23653818-23653837 | None:intergenic | 20.0% |
| !! | AAATTGTTAAATGTCTTGAT+TGG | - | chr8_4:23654022-23654041 | None:intergenic | 20.0% |
| !! | TTGGATGAAAATTTATACTA+TGG | + | chr8_4:23654258-23654277 | Msa1319770:CDS | 20.0% |
| !! | TAATAAAGATGCTTATATCA+AGG | + | chr8_4:23654569-23654588 | Msa1319770:CDS | 20.0% |
| !! | TTAAAATATTCACATGATTC+TGG | - | chr8_4:23654772-23654791 | None:intergenic | 20.0% |
| ! | AATGAATGAAATGATAGAGT+TGG | - | chr8_4:23652134-23652153 | None:intergenic | 25.0% |
| ! | CTATAAATGATGATTGTTCT+TGG | - | chr8_4:23652186-23652205 | None:intergenic | 25.0% |
| !! | CGATTCTTTTGTAATAACAA+TGG | - | chr8_4:23652221-23652240 | None:intergenic | 25.0% |
| !!! | CATTATCACCTTTTGATTTT+CGG | + | chr8_4:23652785-23652804 | Msa1319770:CDS | 25.0% |
| !!! | TATTTTATTTTTTCTGTCGG+TGG | + | chr8_4:23653306-23653325 | Msa1319770:intron | 25.0% |
| !!! | ATTTTATTTTTTCTGTCGGT+GGG | + | chr8_4:23653307-23653326 | Msa1319770:intron | 25.0% |
| !! | AAATAACATTGTTAGTTTGG+TGG | - | chr8_4:23653562-23653581 | None:intergenic | 25.0% |
| ! | GAGAAACTTACTTTCAATAT+TGG | - | chr8_4:23653752-23653771 | None:intergenic | 25.0% |
| ! | TCTAATAATGCATAACACAT+TGG | - | chr8_4:23653791-23653810 | None:intergenic | 25.0% |
| !! | AAATTACTAATTGTGTTGGT+TGG | - | chr8_4:23653814-23653833 | None:intergenic | 25.0% |
| !!! | AATTTGTTTTCTTTGAAGCA+CGG | - | chr8_4:23653972-23653991 | None:intergenic | 25.0% |
| ! | AGACATTTAACAATTTCAGT+TGG | + | chr8_4:23654026-23654045 | Msa1319770:intron | 25.0% |
| !!! | ATATGTTTGATTTTTGGAAC+AGG | + | chr8_4:23654150-23654169 | Msa1319770:intron | 25.0% |
| !!! | TATGTTTGATTTTTGGAACA+GGG | + | chr8_4:23654151-23654170 | Msa1319770:intron | 25.0% |
| !!! | AAACTTCTTCTTCAGTTTTT+TGG | - | chr8_4:23654320-23654339 | None:intergenic | 25.0% |
| ! | AAAAAACTGAAGAAGAAGTT+TGG | + | chr8_4:23654319-23654338 | Msa1319770:CDS | 25.0% |
| ! | TTTCGTCACCCATTTTAAAT+TGG | + | chr8_4:23652157-23652176 | Msa1319770:five_prime_UTR | 30.0% |
| ! | CTTGGTGACCAATTTAAAAT+GGG | - | chr8_4:23652168-23652187 | None:intergenic | 30.0% |
| ! | TCTTGGTGACCAATTTAAAA+TGG | - | chr8_4:23652169-23652188 | None:intergenic | 30.0% |
| CTAGACTCTTGTATAGTAAA+AGG | - | chr8_4:23652255-23652274 | None:intergenic | 30.0% | |
| !!! | GACATTCCACTTTTTGAAAA+TGG | + | chr8_4:23652339-23652358 | Msa1319770:exon | 30.0% |
| !!! | ATTCCACTTTTTGAAAATGG+AGG | + | chr8_4:23652342-23652361 | Msa1319770:exon | 30.0% |
| !!! | GTAATTGGTTTTGTTGTTCT+TGG | - | chr8_4:23652478-23652497 | None:intergenic | 30.0% |
| !! | ATTTGAATGGAGTTGGTAAT+TGG | - | chr8_4:23652493-23652512 | None:intergenic | 30.0% |
| !!! | GAATGTGACGTTGTTTTTTA+TGG | - | chr8_4:23652560-23652579 | None:intergenic | 30.0% |
| AAATCAAAGACATCATACGT+TGG | + | chr8_4:23652716-23652735 | Msa1319770:CDS | 30.0% | |
| !! | AAATCAAAAGGTGATAATGG+CGG | - | chr8_4:23652784-23652803 | None:intergenic | 30.0% |
| CGAAAATCAAAAGGTGATAA+TGG | - | chr8_4:23652787-23652806 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTTAGTGAGCTGT+GGG | + | chr8_4:23652894-23652913 | Msa1319770:CDS | 30.0% |
| ! | TAACATCTAACGTTGCTATT+GGG | + | chr8_4:23653593-23653612 | Msa1319770:intron | 30.0% |
| ! | ACTTACTTTCAATATTGGCT+AGG | - | chr8_4:23653747-23653766 | None:intergenic | 30.0% |
| ACATTAGATACGATATGTGT+CGG | - | chr8_4:23653937-23653956 | None:intergenic | 30.0% | |
| TGGTAATAGAAACCAAAAGA+GGG | + | chr8_4:23654458-23654477 | Msa1319770:CDS | 30.0% | |
| TAATGAAAATTGCTGAGGAT+TGG | + | chr8_4:23654505-23654524 | Msa1319770:CDS | 30.0% | |
| AGATGCTTATATCAAGGAAA+TGG | + | chr8_4:23654575-23654594 | Msa1319770:CDS | 30.0% | |
| CTTATATCAAGGAAATGGAT+AGG | + | chr8_4:23654580-23654599 | Msa1319770:CDS | 30.0% | |
| !! | TTTCACCCCTAAAAGTATTT+CGG | + | chr8_4:23654693-23654712 | Msa1319770:exon | 30.0% |
| ! | TACATCCGAAATACTTTTAG+GGG | - | chr8_4:23654701-23654720 | None:intergenic | 30.0% |
| ! | GTACATCCGAAATACTTTTA+GGG | - | chr8_4:23654702-23654721 | None:intergenic | 30.0% |
| ! | TGTACATCCGAAATACTTTT+AGG | - | chr8_4:23654703-23654722 | None:intergenic | 30.0% |
| GTATTTCGGATGTACATATT+TGG | + | chr8_4:23654707-23654726 | Msa1319770:three_prime_UTR | 30.0% | |
| GAATGAAATGATAGAGTTGG+TGG | - | chr8_4:23652131-23652150 | None:intergenic | 35.0% | |
| AAACTTCACGTACTCATAAG+TGG | + | chr8_4:23652280-23652299 | Msa1319770:five_prime_UTR | 35.0% | |
| TACTCATAAGTGGTGAATTG+CGG | + | chr8_4:23652290-23652309 | Msa1319770:five_prime_UTR | 35.0% | |
| ACAAAGAAGATTCAACACCA+TGG | + | chr8_4:23652369-23652388 | Msa1319770:CDS | 35.0% | |
| AGGAAATCCTTCAACATTCT+TGG | - | chr8_4:23652403-23652422 | None:intergenic | 35.0% | |
| TTGAGTTTGGATTATCGCTT+AGG | - | chr8_4:23652423-23652442 | None:intergenic | 35.0% | |
| AAGTGATTTGAATCCACTTG+AGG | - | chr8_4:23652455-23652474 | None:intergenic | 35.0% | |
| !! | ACTTTGATGATGAATGTGTG+TGG | - | chr8_4:23652519-23652538 | None:intergenic | 35.0% |
| ! | TGATGATAACTTGCGTGATA+AGG | - | chr8_4:23652629-23652648 | None:intergenic | 35.0% |
| TGGTTGTTGTATATCTCGAA+AGG | - | chr8_4:23652746-23652765 | None:intergenic | 35.0% | |
| ACAAAACGCCGAAAATCAAA+AGG | - | chr8_4:23652796-23652815 | None:intergenic | 35.0% | |
| !!! | GTGATTTTTTTAGTGAGCTG+TGG | + | chr8_4:23652893-23652912 | Msa1319770:CDS | 35.0% |
| !!! | TTCTTCTTTTTTTGTCGGCA+AGG | + | chr8_4:23652960-23652979 | Msa1319770:CDS | 35.0% |
| !!! | TTTTTTTGTCGGCAAGGATT+CGG | + | chr8_4:23652966-23652985 | Msa1319770:CDS | 35.0% |
| GTAACATCTAACGTTGCTAT+TGG | + | chr8_4:23653592-23653611 | Msa1319770:intron | 35.0% | |
| AACCTGTATGTAATCTTGAC+AGG | + | chr8_4:23653636-23653655 | Msa1319770:intron | 35.0% | |
| ATCCTGTCAAGATTACATAC+AGG | - | chr8_4:23653641-23653660 | None:intergenic | 35.0% | |
| ! | TTTCAATATTGGCTAGGCTT+TGG | - | chr8_4:23653741-23653760 | None:intergenic | 35.0% |
| !!! | TTTTCTTTGAAGCACGGATA+CGG | - | chr8_4:23653966-23653985 | None:intergenic | 35.0% |
| ! | GACATTCATCTAAGGTTATC+AGG | - | chr8_4:23654233-23654252 | None:intergenic | 35.0% |
| CAATGAGAGACATTCATCTA+AGG | - | chr8_4:23654241-23654260 | None:intergenic | 35.0% | |
| CTTAGATGAATGTCTCTCAT+TGG | + | chr8_4:23654239-23654258 | Msa1319770:CDS | 35.0% | |
| AGAACATAAAGACGACGATA+AGG | + | chr8_4:23654284-23654303 | Msa1319770:CDS | 35.0% | |
| TGAAGAAGAAGTTTGGATTG+AGG | + | chr8_4:23654326-23654345 | Msa1319770:CDS | 35.0% | |
| !! | CAATTTTGATACAGTTCTGC+TGG | + | chr8_4:23654413-23654432 | Msa1319770:CDS | 35.0% |
| ! | AGTTCTGCTGGAATTTTTCA+AGG | + | chr8_4:23654425-23654444 | Msa1319770:CDS | 35.0% |
| !!! | TTTTTCAAGGAAGAGCTAAG+TGG | + | chr8_4:23654438-23654457 | Msa1319770:CDS | 35.0% |
| GTGGTAATAGAAACCAAAAG+AGG | + | chr8_4:23654457-23654476 | Msa1319770:CDS | 35.0% | |
| GGAGATAATGAAAATTGCTG+AGG | + | chr8_4:23654500-23654519 | Msa1319770:CDS | 35.0% | |
| TATGAGTACGTGAAGTTTCG+TGG | - | chr8_4:23652278-23652297 | None:intergenic | 40.0% | |
| ACTCATAAGTGGTGAATTGC+GGG | + | chr8_4:23652291-23652310 | Msa1319770:five_prime_UTR | 40.0% | |
| GAGAAGACCAAGAATGTTGA+AGG | + | chr8_4:23652393-23652412 | Msa1319770:CDS | 40.0% | |
| ! | GAGGAACATGAGTTTGAGTT+TGG | - | chr8_4:23652436-23652455 | None:intergenic | 40.0% |
| TCAAACTCATGTTCCTCAAG+TGG | + | chr8_4:23652439-23652458 | Msa1319770:CDS | 40.0% | |
| !! | ATGTGTGTGGTGGATTTGAA+TGG | - | chr8_4:23652506-23652525 | None:intergenic | 40.0% |
| !! | TTGATGATGAATGTGTGTGG+TGG | - | chr8_4:23652516-23652535 | None:intergenic | 40.0% |
| AATCGAAATCGAAACCAGCA+CGG | + | chr8_4:23652690-23652709 | Msa1319770:CDS | 40.0% | |
| ! | TGATTTTCGGCGTTTTGTGA+CGG | + | chr8_4:23652798-23652817 | Msa1319770:CDS | 40.0% |
| !!! | TTATTTTTTCTGTCGGTGGG+AGG | + | chr8_4:23653310-23653329 | Msa1319770:intron | 40.0% |
| ! | CATTGTTAGTTTGGTGGCAA+AGG | - | chr8_4:23653556-23653575 | None:intergenic | 40.0% |
| ACAGTCCAGTTTCAGTTCTT+CGG | + | chr8_4:23653686-23653705 | Msa1319770:CDS | 40.0% | |
| GCACGAACACTTCTCAAATT+AGG | + | chr8_4:23653866-23653885 | Msa1319770:intron | 40.0% | |
| AATTAGGCATGTCCCAGTAT+AGG | + | chr8_4:23653882-23653901 | Msa1319770:intron | 40.0% | |
| TAAAGACGACGATAAGGAAG+AGG | + | chr8_4:23654290-23654309 | Msa1319770:CDS | 40.0% | |
| AAGGAAATGGATAGGAGAGA+TGG | + | chr8_4:23654588-23654607 | Msa1319770:CDS | 40.0% | |
| AGGAAATGGATAGGAGAGAT+GGG | + | chr8_4:23654589-23654608 | Msa1319770:CDS | 40.0% | |
| TGAGATGGTTATGGAGATTG+AGG | + | chr8_4:23654638-23654657 | Msa1319770:CDS | 40.0% | |
| !! | AACGCAGTTTTTGTGCTGTT+TGG | + | chr8_4:23654736-23654755 | Msa1319770:three_prime_UTR | 40.0% |
| ! | GCGCCTCCATTTTCAAAAAG+TGG | - | chr8_4:23652348-23652367 | None:intergenic | 45.0% |
| ! | CATTCTTGGTCTTCTCTCCA+TGG | - | chr8_4:23652389-23652408 | None:intergenic | 45.0% |
| !! | GTGGTGGATTTGAATGGAGT+TGG | - | chr8_4:23652500-23652519 | None:intergenic | 45.0% |
| ! | ATAAGGTTCGTGGTAGTGAG+AGG | - | chr8_4:23652612-23652631 | None:intergenic | 45.0% |
| AACTTGCGTGATAAGGTTCG+TGG | - | chr8_4:23652622-23652641 | None:intergenic | 45.0% | |
| AGAACAAGCCAACGATGCAA+AGG | + | chr8_4:23652658-23652677 | Msa1319770:CDS | 45.0% | |
| CTCTTTCACCTTTGCATCGT+TGG | - | chr8_4:23652669-23652688 | None:intergenic | 45.0% | |
| !! | GTCTTTGATTTTCACCGTGC+TGG | - | chr8_4:23652707-23652726 | None:intergenic | 45.0% |
| !! | AAAGGTGATAATGGCGGTGA+TGG | - | chr8_4:23652778-23652797 | None:intergenic | 45.0% |
| !! | TTTTGTGACGGAATCGTCGA+CGG | + | chr8_4:23652810-23652829 | Msa1319770:CDS | 45.0% |
| ! | GGTGATTCTAGTTGGAGTGA+CGG | + | chr8_4:23652871-23652890 | Msa1319770:CDS | 45.0% |
| ! | CTGGACTGTGTTGTTCATCT+TGG | - | chr8_4:23653675-23653694 | None:intergenic | 45.0% |
| CAGTCCAGTTTCAGTTCTTC+GGG | + | chr8_4:23653687-23653706 | Msa1319770:CDS | 45.0% | |
| CAAGACACGTGTCCTATACT+GGG | - | chr8_4:23653897-23653916 | None:intergenic | 45.0% | |
| ACAAGACACGTGTCCTATAC+TGG | - | chr8_4:23653898-23653917 | None:intergenic | 45.0% | |
| AACCAAAAGAGGGACGATGA+AGG | + | chr8_4:23654468-23654487 | Msa1319770:CDS | 45.0% | |
| ! | ATCCTTCATCGTCCCTCTTT+TGG | - | chr8_4:23654473-23654492 | None:intergenic | 45.0% |
| GGACGATGAAGGATTTGAGT+TGG | + | chr8_4:23654479-23654498 | Msa1319770:CDS | 45.0% | |
| AAATGGATAGGAGAGATGGG+TGG | + | chr8_4:23654592-23654611 | Msa1319770:CDS | 45.0% | |
| TGATGAGGAGCTAGATGAGA+TGG | + | chr8_4:23654623-23654642 | Msa1319770:CDS | 45.0% | |
| GGAGCTAGATGAGATGGTTA+TGG | + | chr8_4:23654629-23654648 | Msa1319770:CDS | 45.0% | |
| !! | TATTTAATTAAATTAAGTAT+AGG | + | chr8_4:23653154-23653173 | Msa1319770:intron | 5.0% |
| ACTACTGCGACGACATGTTG+TGG | + | chr8_4:23652835-23652854 | Msa1319770:CDS | 50.0% | |
| TGTTGTGGCAGTAGTAGCGA+CGG | + | chr8_4:23652850-23652869 | Msa1319770:CDS | 50.0% | |
| GTAGCGACGGTGATTCTAGT+TGG | + | chr8_4:23652863-23652882 | Msa1319770:CDS | 50.0% | |
| AACGACGACGTTGAAGAGAG+TGG | + | chr8_4:23652925-23652944 | Msa1319770:CDS | 50.0% | |
| ! | TTTTGTCGGCAAGGATTCGG+TGG | + | chr8_4:23652969-23652988 | Msa1319770:CDS | 50.0% |
| ! | ATTCGGTGGCATCGTTCGTT+GGG | + | chr8_4:23652983-23653002 | Msa1319770:CDS | 50.0% |
| GCAACCCGAAGAACTGAAAC+TGG | - | chr8_4:23653694-23653713 | None:intergenic | 50.0% | |
| AGACGACGATAAGGAAGAGG+AGG | + | chr8_4:23654293-23654312 | Msa1319770:CDS | 50.0% | |
| ATAGGAGAGATGGGTGGAGT+AGG | + | chr8_4:23654598-23654617 | Msa1319770:CDS | 50.0% | |
| TGGGTGGAGTAGGTTTGATG+AGG | + | chr8_4:23654608-23654627 | Msa1319770:CDS | 50.0% | |
| !! | GGTAGTGAGAGGATGGTGGA+GGG | - | chr8_4:23652601-23652620 | None:intergenic | 55.0% |
| ! | TGGTAGTGAGAGGATGGTGG+AGG | - | chr8_4:23652602-23652621 | None:intergenic | 55.0% |
| ! | TCGTGGTAGTGAGAGGATGG+TGG | - | chr8_4:23652605-23652624 | None:intergenic | 55.0% |
| ! | GGTTCGTGGTAGTGAGAGGA+TGG | - | chr8_4:23652608-23652627 | None:intergenic | 55.0% |
| !! | GATTCGGTGGCATCGTTCGT+TGG | + | chr8_4:23652982-23653001 | Msa1319770:CDS | 55.0% |
| TTCGGTGGCATCGTTCGTTG+GGG | + | chr8_4:23652984-23653003 | Msa1319770:CDS | 55.0% | |
| CTCTATACAACTGCCCCAGC+AGG | - | chr8_4:23653342-23653361 | None:intergenic | 55.0% | |
| !! | GGCGGTGATGGAATCGTCGA+TGG | - | chr8_4:23652766-23652785 | None:intergenic | 60.0% |
| GGCATCGTTCGTTGGGGACA+AGG | + | chr8_4:23652990-23653009 | Msa1319770:CDS | 60.0% | |
| GTGGGAGGCTGCTGCCTGCT+GGG | + | chr8_4:23653325-23653344 | Msa1319770:intron | 70.0% | |
| TGGGAGGCTGCTGCCTGCTG+GGG | + | chr8_4:23653326-23653345 | Msa1319770:intron | 70.0% | |
| GGTGGGAGGCTGCTGCCTGC+TGG | + | chr8_4:23653324-23653343 | Msa1319770:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 23652119 | 23654797 | 23652119 | ID=Msa1319770;Name=Msa1319770 |
| chr8_4 | mRNA | 23652119 | 23654797 | 23652119 | ID=Msa1319770-mRNA-1;Parent=Msa1319770;Name=Msa1319770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=239|1|1|1|1|1|3|93|429 |
| chr8_4 | exon | 23652119 | 23653011 | 23652119 | ID=Msa1319770-mRNA-1:exon:8179;Parent=Msa1319770-mRNA-1 |
| chr8_4 | exon | 23653658 | 23653760 | 23653658 | ID=Msa1319770-mRNA-1:exon:8180;Parent=Msa1319770-mRNA-1 |
| chr8_4 | exon | 23654172 | 23654797 | 23654172 | ID=Msa1319770-mRNA-1:exon:8181;Parent=Msa1319770-mRNA-1 |
| chr8_4 | five_prime_UTR | 23652119 | 23652357 | 23652119 | ID=Msa1319770-mRNA-1:five_prime_utr;Parent=Msa1319770-mRNA-1 |
| chr8_4 | CDS | 23652358 | 23653011 | 23652358 | ID=Msa1319770-mRNA-1:cds;Parent=Msa1319770-mRNA-1 |
| chr8_4 | CDS | 23653658 | 23653760 | 23653658 | ID=Msa1319770-mRNA-1:cds;Parent=Msa1319770-mRNA-1 |
| chr8_4 | CDS | 23654172 | 23654704 | 23654172 | ID=Msa1319770-mRNA-1:cds;Parent=Msa1319770-mRNA-1 |
| chr8_4 | three_prime_UTR | 23654705 | 23654797 | 23654705 | ID=Msa1319770-mRNA-1:three_prime_utr;Parent=Msa1319770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
