Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239080 | XP_013444953.1 | 92.841 | 433 | 27 | 2 | 1 | 432 | 1 | 430 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239080 | A0A072TQ72 | 92.841 | 433 | 27 | 2 | 1 | 432 | 1 | 430 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032370 | Msa1239080 | 0.835371 | 1.744822e-56 | -8.615850e-47 |
| Msa0642720 | Msa1239080 | 0.827261 | 1.724969e-54 | -8.615850e-47 |
| Msa0681800 | Msa1239080 | 0.807284 | 5.448695e-50 | -8.615850e-47 |
| Msa0219190 | Msa1239080 | 0.803901 | 2.793840e-49 | -8.615850e-47 |
| Msa1228890 | Msa1239080 | 0.812862 | 3.423628e-51 | -8.615850e-47 |
| Msa1239080 | Msa1254710 | 0.821472 | 3.964364e-53 | -8.615850e-47 |
| Msa1239080 | Msa1267840 | 0.802907 | 4.489403e-49 | -8.615850e-47 |
| Msa1239080 | Msa1280560 | 0.902719 | 7.273438e-79 | -8.615850e-47 |
| Msa1239080 | Msa1295630 | 0.807161 | 5.786973e-50 | -8.615850e-47 |
| Msa1239080 | Msa1319770 | 0.870986 | 9.633638e-67 | -8.615850e-47 |
| Msa1239080 | Msa1340020 | 0.801510 | 8.702485e-49 | -8.615850e-47 |
| Msa1239080 | Msa1348360 | 0.811767 | 5.938788e-51 | -8.615850e-47 |
| Msa1239080 | Msa1373330 | 0.808563 | 2.912121e-50 | -8.615850e-47 |
| Msa1239080 | Msa1466460 | 0.815391 | 9.469444e-52 | -8.615850e-47 |
| Msa0426330 | Msa1239080 | 0.810696 | 1.013816e-50 | -8.615850e-47 |
| Msa0986920 | Msa1239080 | 0.830525 | 2.796421e-55 | -8.615850e-47 |
| Msa1037920 | Msa1239080 | 0.815703 | 8.069353e-52 | -8.615850e-47 |
| Msa0281360 | Msa1239080 | 0.801929 | 7.139391e-49 | -8.615850e-47 |
| Msa1185540 | Msa1239080 | 0.840287 | 9.521407e-58 | -8.615850e-47 |
| Msa0546300 | Msa1239080 | 0.827421 | 1.579374e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239080 | MtrunA17_Chr8g0350771 | 92.841 | 433 | 27 | 2 | 1 | 432 | 1 | 430 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1239080 | AT4G00770.1 | 33.113 | 453 | 235 | 21 | 11 | 432 | 1 | 416 | 6.51e-36 | 137 |
Find 78 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCATCGTTCCTCTTT+TGG | 0.190394 | 8_2:-20194542 | None:intergenic |
| TTAAAATATTCACATGATTC+TGG | 0.219032 | 8_2:-20194842 | None:intergenic |
| CATGAGTTTGAGTTTGAGTT+TGG | 0.226769 | 8_2:-20192474 | None:intergenic |
| TCTTGGTGACCAATTTAAAA+TGG | 0.239183 | 8_2:-20192206 | None:intergenic |
| AGGAAATCTTTCAACATTCT+TGG | 0.268176 | 8_2:-20192441 | None:intergenic |
| GAGAAACTTACTTTCAATAT+TGG | 0.270486 | 8_2:-20193795 | None:intergenic |
| CTCTTTCACCTTTGCATCGT+TGG | 0.295512 | 8_2:-20192722 | None:intergenic |
| TTGGATGAAAATTTATACTA+TGG | 0.316942 | 8_2:+20194330 | Msa1239080:CDS |
| TTTCACCCCTAAAAGTATTT+CGG | 0.330567 | 8_2:+20194765 | Msa1239080:exon |
| ATTCGGTGGCATCGTTCGTT+GGG | 0.334833 | 8_2:+20193039 | Msa1239080:CDS |
| ATTTGAATGGAGTTTGTAAT+TGG | 0.346951 | 8_2:-20192537 | None:intergenic |
| GTATTTCGGATGTACATATA+TGG | 0.348219 | 8_2:+20194779 | Msa1239080:three_prime_UTR |
| CTATAAATGATGATTGTTCT+TGG | 0.350469 | 8_2:-20192223 | None:intergenic |
| CTGGACTTTGTTGTTCATCT+TGG | 0.351202 | 8_2:-20193718 | None:intergenic |
| GCAACTCGAAGAACTGAAAC+TGG | 0.364596 | 8_2:-20193737 | None:intergenic |
| GGAGCTAGATGAGATGGTTA+TGG | 0.368563 | 8_2:+20194701 | Msa1239080:CDS |
| CGAAAATCAAAAGGTGATAA+TGG | 0.400296 | 8_2:-20192840 | None:intergenic |
| TTTCAATATTGGCAAGGCTT+TGG | 0.404934 | 8_2:-20193784 | None:intergenic |
| AGATGCTTATATCAAGGAAA+TGG | 0.417722 | 8_2:+20194647 | Msa1239080:CDS |
| CAATGAGAGACATTCATCTA+AGG | 0.425187 | 8_2:-20194310 | None:intergenic |
| TGATGATAACTTGCGTGATA+AGG | 0.429555 | 8_2:-20192682 | None:intergenic |
| GAACGATGAAGGATTTGAGT+TGG | 0.441325 | 8_2:+20194551 | Msa1239080:CDS |
| GATTCGGTGGCATCGTTCGT+TGG | 0.446796 | 8_2:+20193038 | Msa1239080:CDS |
| CATTCTTGGTCTTCTCTCCA+TGG | 0.454188 | 8_2:-20192427 | None:intergenic |
| TAATGAAAATTGCTGAGGAT+TGG | 0.457153 | 8_2:+20194577 | Msa1239080:CDS |
| CTTAGATGAATGTCTCTCAT+TGG | 0.457276 | 8_2:+20194311 | Msa1239080:CDS |
| CTTGGTGACCAATTTAAAAT+GGG | 0.458170 | 8_2:-20192205 | None:intergenic |
| TGAGATGGTTATGGAGATTG+AGG | 0.463953 | 8_2:+20194710 | Msa1239080:CDS |
| TTGAGTTTGGATTCTCACTT+AGG | 0.467775 | 8_2:-20192461 | None:intergenic |
| TGATGAGGAGCTAGATGAGA+TGG | 0.470146 | 8_2:+20194695 | Msa1239080:CDS |
| AAGGAAATGGATAGGAGAGA+TGG | 0.470909 | 8_2:+20194660 | Msa1239080:CDS |
| GGCATCGTTCGTTGGGGACA+AGG | 0.488211 | 8_2:+20193046 | Msa1239080:CDS |
| TGGTAGTGAGAGGATGGTGG+AGG | 0.494083 | 8_2:-20192655 | None:intergenic |
| AAAGGTGATAATGGCGGTGA+TGG | 0.497649 | 8_2:-20192831 | None:intergenic |
| AGAACATAAAGACGACGATA+AGG | 0.510127 | 8_2:+20194356 | Msa1239080:CDS |
| ATAGGAGAGATGGGTGGAGT+AGG | 0.513651 | 8_2:+20194670 | Msa1239080:CDS |
| TGAAGAAGAAGTTTGGATTG+AGG | 0.513683 | 8_2:+20194398 | Msa1239080:CDS |
| AGGAAATGGATAGGAGAGAT+GGG | 0.519654 | 8_2:+20194661 | Msa1239080:CDS |
| GTAGTGACGGTGATTCTAGT+TGG | 0.528108 | 8_2:+20192919 | Msa1239080:CDS |
| GGTTCGTGGTAGTGAGAGGA+TGG | 0.528255 | 8_2:-20192661 | None:intergenic |
| TCAAACTCATGTTCCTCAAG+TGG | 0.530393 | 8_2:+20192486 | Msa1239080:CDS |
| AAACTTCACATACTCATAAG+TGG | 0.535066 | 8_2:+20192320 | Msa1239080:five_prime_UTR |
| AACCAAAAGAGGAACGATGA+AGG | 0.540411 | 8_2:+20194540 | Msa1239080:CDS |
| ACAAAACGCCGAAAATCAAA+AGG | 0.540830 | 8_2:-20192849 | None:intergenic |
| TCGTGGTAGTGAGAGGATGG+TGG | 0.542013 | 8_2:-20192658 | None:intergenic |
| TAATAAAGATGCTTATATCA+AGG | 0.544634 | 8_2:+20194641 | Msa1239080:CDS |
| GAATGAAATGATAGAGTTGG+TGG | 0.554740 | 8_2:-20192168 | None:intergenic |
| ATGTGTGTGGTGGATTTGAA+TGG | 0.561044 | 8_2:-20192550 | None:intergenic |
| GACATTCATCTAAGGTTACC+AGG | 0.562283 | 8_2:-20194302 | None:intergenic |
| ACTTACTTTCAATATTGGCA+AGG | 0.563334 | 8_2:-20193790 | None:intergenic |
| TAAAGACGACGATAAGGAAG+AGG | 0.567208 | 8_2:+20194362 | Msa1239080:CDS |
| AACTTGCGTGATAAGGTTCG+TGG | 0.577209 | 8_2:-20192675 | None:intergenic |
| TGGTTGTTGTATATCTCGAA+AGG | 0.580810 | 8_2:-20192799 | None:intergenic |
| AAGTGATTTGAATCCACTTG+AGG | 0.581121 | 8_2:-20192499 | None:intergenic |
| TGGGTGGAGTAGGTTTGATG+AGG | 0.582244 | 8_2:+20194680 | Msa1239080:CDS |
| CTTATATCAAGGAAATGGAT+AGG | 0.583522 | 8_2:+20194652 | Msa1239080:CDS |
| TACTCATAAGTGGTGAATTG+CGG | 0.591051 | 8_2:+20192330 | Msa1239080:five_prime_UTR |
| AACGACGACGTTGAAGAGAG+TGG | 0.596261 | 8_2:+20192981 | Msa1239080:CDS |
| GGAGATAATGAAAATTGCTG+AGG | 0.596531 | 8_2:+20194572 | Msa1239080:CDS |
| AGAACAAGCCAACGATGCAA+AGG | 0.601818 | 8_2:+20192714 | Msa1239080:CDS |
| TTCGGTGGCATCGTTCGTTG+GGG | 0.603222 | 8_2:+20193040 | Msa1239080:CDS |
| GGTAGTGAGAGGATGGTGGA+GGG | 0.606737 | 8_2:-20192654 | None:intergenic |
| AATGAATGAAATGATAGAGT+TGG | 0.610196 | 8_2:-20192171 | None:intergenic |
| GTGGTAATAGAAACCAAAAG+AGG | 0.617558 | 8_2:+20194529 | Msa1239080:CDS |
| ATGATGATGAATGTGTGTGG+TGG | 0.618975 | 8_2:-20192560 | None:intergenic |
| GGCGGTGATGGAATCGTCGA+TGG | 0.622472 | 8_2:-20192819 | None:intergenic |
| ACGACGACGTTGAAGAGAGT+GGG | 0.622525 | 8_2:+20192982 | Msa1239080:CDS |
| GAGTCATGCAAAATTTGACC+TGG | 0.623513 | 8_2:+20194284 | Msa1239080:CDS |
| ATAAGGTTCGTGGTAGTGAG+AGG | 0.628338 | 8_2:-20192665 | None:intergenic |
| AGACGACGATAAGGAAGAGG+AGG | 0.638078 | 8_2:+20194365 | Msa1239080:CDS |
| ACTACTGCAACGACTTGTTG+TGG | 0.645608 | 8_2:+20192891 | Msa1239080:CDS |
| AAATGGATAGGAGAGATGGG+TGG | 0.646442 | 8_2:+20194664 | Msa1239080:CDS |
| AAATCAAAGACATCATACGT+TGG | 0.656713 | 8_2:+20192772 | Msa1239080:CDS |
| ACAAAGAAGATTCAACACCA+TGG | 0.680203 | 8_2:+20192410 | Msa1239080:CDS |
| ATGATGATGATGAATGTGTG+TGG | 0.684930 | 8_2:-20192563 | None:intergenic |
| GGTGATTCTAGTTGGAGTGA+CGG | 0.694849 | 8_2:+20192927 | Msa1239080:CDS |
| AAATCAAAAGGTGATAATGG+CGG | 0.694984 | 8_2:-20192837 | None:intergenic |
| TGTTGTGGTAGTAGTAGTGA+CGG | 0.703793 | 8_2:+20192906 | Msa1239080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAAACAAAATAATTTA+TGG | + | chr8_2:20193454-20193473 | Msa1239080:intron | 10.0% |
| !!! | AAAAAAAAAATTTGTTAGTT+TGG | - | chr8_2:20193613-20193632 | None:intergenic | 10.0% |
| !!! | ACATATTTTCTATTTGAAAA+TGG | + | chr8_2:20192380-20192399 | Msa1239080:exon | 15.0% |
| !!! | GTTTTTTATGGTTTTTATTA+GGG | - | chr8_2:20192604-20192623 | None:intergenic | 15.0% |
| !!! | TGTTTTTTATGGTTTTTATT+AGG | - | chr8_2:20192605-20192624 | None:intergenic | 15.0% |
| !! | CTTTATAGAAAAAAAACTAT+GGG | + | chr8_2:20193124-20193143 | Msa1239080:intron | 15.0% |
| !! | TATATTCTATCATATTCTAT+TGG | - | chr8_2:20193187-20193206 | None:intergenic | 15.0% |
| !! | TAGAATATGATAGAATATAT+TGG | + | chr8_2:20193188-20193207 | Msa1239080:intron | 15.0% |
| !! | GGTATTATTTAATGAAATAT+AGG | + | chr8_2:20193209-20193228 | Msa1239080:intron | 15.0% |
| !!! | ACTTATTTTATTTTTTCTGT+CGG | + | chr8_2:20193354-20193373 | Msa1239080:intron | 15.0% |
| !! | ATTTGTGTTCTAATAATTTA+TGG | + | chr8_2:20193424-20193443 | Msa1239080:intron | 15.0% |
| !! | TAACACATTAGTTAATTAAA+AGG | - | chr8_2:20193825-20193844 | None:intergenic | 15.0% |
| !! | TATTCAACTATTTAATTCTT+AGG | + | chr8_2:20194042-20194061 | Msa1239080:intron | 15.0% |
| !!! | TACTAATAATGTTTGATTTT+TGG | + | chr8_2:20194216-20194235 | Msa1239080:intron | 15.0% |
| !!! | TATTTTCTATTTGAAAATGG+AGG | + | chr8_2:20192383-20192402 | Msa1239080:exon | 20.0% |
| !!! | TTGTTTTCATCTTTTTTTGT+CGG | + | chr8_2:20193011-20193030 | Msa1239080:CDS | 20.0% |
| !!! | CCATAGTTTTTTTTCTATAA+AGG | - | chr8_2:20193126-20193145 | None:intergenic | 20.0% |
| !! | CCTTTATAGAAAAAAAACTA+TGG | + | chr8_2:20193123-20193142 | Msa1239080:intron | 20.0% |
| !! | GTATAGTGCATAAAAAATAT+AGG | - | chr8_2:20193151-20193170 | None:intergenic | 20.0% |
| !!! | AAAAAAATTTGTTAGTTTGG+TGG | - | chr8_2:20193610-20193629 | None:intergenic | 20.0% |
| !! | CATTAGTTAATTAAAAGGAA+AGG | - | chr8_2:20193820-20193839 | None:intergenic | 20.0% |
| !! | TAGAAAATTACTAATTGTGT+TGG | - | chr8_2:20193864-20193883 | None:intergenic | 20.0% |
| !! | TTGGATGAAAATTTATACTA+TGG | + | chr8_2:20194330-20194349 | Msa1239080:CDS | 20.0% |
| !! | TAATAAAGATGCTTATATCA+AGG | + | chr8_2:20194641-20194660 | Msa1239080:CDS | 20.0% |
| !! | TTAAAATATTCACATGATTC+TGG | - | chr8_2:20194845-20194864 | None:intergenic | 20.0% |
| ! | AATGAATGAAATGATAGAGT+TGG | - | chr8_2:20192174-20192193 | None:intergenic | 25.0% |
| !! | TTTCATCACCCATTTTAAAT+TGG | + | chr8_2:20192197-20192216 | Msa1239080:five_prime_UTR | 25.0% |
| ! | CTATAAATGATGATTGTTCT+TGG | - | chr8_2:20192226-20192245 | None:intergenic | 25.0% |
| !! | CGATTCTTTTGTAATAACAA+TGG | - | chr8_2:20192261-20192280 | None:intergenic | 25.0% |
| ! | ATTTGAATGGAGTTTGTAAT+TGG | - | chr8_2:20192540-20192559 | None:intergenic | 25.0% |
| !!! | CATTATCACCTTTTGATTTT+CGG | + | chr8_2:20192841-20192860 | Msa1239080:CDS | 25.0% |
| !!! | TGATTTTTTTAGTGAGTTGT+GGG | + | chr8_2:20192950-20192969 | Msa1239080:CDS | 25.0% |
| !!! | TATTTTATTTTTTCTGTCGG+TGG | + | chr8_2:20193357-20193376 | Msa1239080:intron | 25.0% |
| !!! | ATTTTATTTTTTCTGTCGGT+GGG | + | chr8_2:20193358-20193377 | Msa1239080:intron | 25.0% |
| ! | GAATTATCTAACATAAACAC+AGG | + | chr8_2:20193530-20193549 | Msa1239080:intron | 25.0% |
| ! | GAGAAACTTACTTTCAATAT+TGG | - | chr8_2:20193798-20193817 | None:intergenic | 25.0% |
| !! | AAATTACTAATTGTGTTGGT+TGG | - | chr8_2:20193860-20193879 | None:intergenic | 25.0% |
| !!! | AATTTGTTTTCTTTGAAGCA+CGG | - | chr8_2:20194018-20194037 | None:intergenic | 25.0% |
| ! | AGACATTTAACAATTTCAGT+TGG | + | chr8_2:20194072-20194091 | Msa1239080:intron | 25.0% |
| !!! | TAATGTTTGATTTTTGGAAC+AGG | + | chr8_2:20194222-20194241 | Msa1239080:intron | 25.0% |
| !!! | AATGTTTGATTTTTGGAACA+GGG | + | chr8_2:20194223-20194242 | Msa1239080:intron | 25.0% |
| !!! | AAACTTCTTCTTCAGTTTTT+TGG | - | chr8_2:20194392-20194411 | None:intergenic | 25.0% |
| ! | AAAAAACTGAAGAAGAAGTT+TGG | + | chr8_2:20194391-20194410 | Msa1239080:CDS | 25.0% |
| ! | CTTGGTGACCAATTTAAAAT+GGG | - | chr8_2:20192208-20192227 | None:intergenic | 30.0% |
| ! | TCTTGGTGACCAATTTAAAA+TGG | - | chr8_2:20192209-20192228 | None:intergenic | 30.0% |
| AAACTTCACATACTCATAAG+TGG | + | chr8_2:20192320-20192339 | Msa1239080:five_prime_UTR | 30.0% | |
| AGGAAATCTTTCAACATTCT+TGG | - | chr8_2:20192444-20192463 | None:intergenic | 30.0% | |
| !!! | GTAATTGGTTTTGTTGTTCT+TGG | - | chr8_2:20192525-20192544 | None:intergenic | 30.0% |
| !!! | GAATGTGACGTTGTTTTTTA+TGG | - | chr8_2:20192616-20192635 | None:intergenic | 30.0% |
| AAATCAAAGACATCATACGT+TGG | + | chr8_2:20192772-20192791 | Msa1239080:CDS | 30.0% | |
| !! | AAATCAAAAGGTGATAATGG+CGG | - | chr8_2:20192840-20192859 | None:intergenic | 30.0% |
| CGAAAATCAAAAGGTGATAA+TGG | - | chr8_2:20192843-20192862 | None:intergenic | 30.0% | |
| !!! | GTGATTTTTTTAGTGAGTTG+TGG | + | chr8_2:20192949-20192968 | Msa1239080:CDS | 30.0% |
| ! | ATTTGTTAGTTTGGTGGTAA+TGG | - | chr8_2:20193604-20193623 | None:intergenic | 30.0% |
| ACTTACTTTCAATATTGGCA+AGG | - | chr8_2:20193793-20193812 | None:intergenic | 30.0% | |
| ACATTAGATACGATATGTGT+CGG | - | chr8_2:20193983-20194002 | None:intergenic | 30.0% | |
| TAATGAAAATTGCTGAGGAT+TGG | + | chr8_2:20194577-20194596 | Msa1239080:CDS | 30.0% | |
| AGATGCTTATATCAAGGAAA+TGG | + | chr8_2:20194647-20194666 | Msa1239080:CDS | 30.0% | |
| CTTATATCAAGGAAATGGAT+AGG | + | chr8_2:20194652-20194671 | Msa1239080:CDS | 30.0% | |
| !! | TTTCACCCCTAAAAGTATTT+CGG | + | chr8_2:20194765-20194784 | Msa1239080:exon | 30.0% |
| ! | TACATCCGAAATACTTTTAG+GGG | - | chr8_2:20194773-20194792 | None:intergenic | 30.0% |
| ! | GTACATCCGAAATACTTTTA+GGG | - | chr8_2:20194774-20194793 | None:intergenic | 30.0% |
| ! | TGTACATCCGAAATACTTTT+AGG | - | chr8_2:20194775-20194794 | None:intergenic | 30.0% |
| GTATTTCGGATGTACATATA+TGG | + | chr8_2:20194779-20194798 | Msa1239080:three_prime_UTR | 30.0% | |
| GAATGAAATGATAGAGTTGG+TGG | - | chr8_2:20192171-20192190 | None:intergenic | 35.0% | |
| TACTCATAAGTGGTGAATTG+CGG | + | chr8_2:20192330-20192349 | Msa1239080:five_prime_UTR | 35.0% | |
| ACAAAGAAGATTCAACACCA+TGG | + | chr8_2:20192410-20192429 | Msa1239080:CDS | 35.0% | |
| TTGAGTTTGGATTCTCACTT+AGG | - | chr8_2:20192464-20192483 | None:intergenic | 35.0% | |
| ! | CATGAGTTTGAGTTTGAGTT+TGG | - | chr8_2:20192477-20192496 | None:intergenic | 35.0% |
| AAGTGATTTGAATCCACTTG+AGG | - | chr8_2:20192502-20192521 | None:intergenic | 35.0% | |
| ! | ATGATGATGATGAATGTGTG+TGG | - | chr8_2:20192566-20192585 | None:intergenic | 35.0% |
| ! | TGATGATAACTTGCGTGATA+AGG | - | chr8_2:20192685-20192704 | None:intergenic | 35.0% |
| TGGTTGTTGTATATCTCGAA+AGG | - | chr8_2:20192802-20192821 | None:intergenic | 35.0% | |
| ACAAAACGCCGAAAATCAAA+AGG | - | chr8_2:20192852-20192871 | None:intergenic | 35.0% | |
| !!! | TTCATCTTTTTTTGTCGGCA+AGG | + | chr8_2:20193016-20193035 | Msa1239080:CDS | 35.0% |
| !!! | TTTTTTTGTCGGCAAGGATT+CGG | + | chr8_2:20193022-20193041 | Msa1239080:CDS | 35.0% |
| AACATCTAACGTTTAGCCAT+TGG | + | chr8_2:20193638-20193657 | Msa1239080:intron | 35.0% | |
| ACATCTAACGTTTAGCCATT+GGG | + | chr8_2:20193639-20193658 | Msa1239080:intron | 35.0% | |
| CAGCAAAACAATAATCCCAA+TGG | - | chr8_2:20193657-20193676 | None:intergenic | 35.0% | |
| AACCTGTTTGTAATCTTGAC+AGG | + | chr8_2:20193682-20193701 | Msa1239080:intron | 35.0% | |
| ATCCTGTCAAGATTACAAAC+AGG | - | chr8_2:20193687-20193706 | None:intergenic | 35.0% | |
| TTTCAATATTGGCAAGGCTT+TGG | - | chr8_2:20193787-20193806 | None:intergenic | 35.0% | |
| !! | GTTCTAAAACCTTTGAAGCA+TGG | + | chr8_2:20193895-20193914 | Msa1239080:intron | 35.0% |
| AATTAAGCATGTCCCAGTAT+CGG | + | chr8_2:20193928-20193947 | Msa1239080:intron | 35.0% | |
| !!! | TTTTCTTTGAAGCACGGATA+CGG | - | chr8_2:20194012-20194031 | None:intergenic | 35.0% |
| CAATGAGAGACATTCATCTA+AGG | - | chr8_2:20194313-20194332 | None:intergenic | 35.0% | |
| CTTAGATGAATGTCTCTCAT+TGG | + | chr8_2:20194311-20194330 | Msa1239080:CDS | 35.0% | |
| AGAACATAAAGACGACGATA+AGG | + | chr8_2:20194356-20194375 | Msa1239080:CDS | 35.0% | |
| TGAAGAAGAAGTTTGGATTG+AGG | + | chr8_2:20194398-20194417 | Msa1239080:CDS | 35.0% | |
| !! | CAATTTTGATACAGTTCTGC+TGG | + | chr8_2:20194485-20194504 | Msa1239080:CDS | 35.0% |
| ! | AGTTCTGCTGGAATTTTTCA+AGG | + | chr8_2:20194497-20194516 | Msa1239080:CDS | 35.0% |
| !!! | TTTTTCAAGGAAGAGCTAAG+TGG | + | chr8_2:20194510-20194529 | Msa1239080:CDS | 35.0% |
| GTGGTAATAGAAACCAAAAG+AGG | + | chr8_2:20194529-20194548 | Msa1239080:CDS | 35.0% | |
| GGAGATAATGAAAATTGCTG+AGG | + | chr8_2:20194572-20194591 | Msa1239080:CDS | 35.0% | |
| TCAAACTCATGTTCCTCAAG+TGG | + | chr8_2:20192486-20192505 | Msa1239080:CDS | 40.0% | |
| !! | ATGTGTGTGGTGGATTTGAA+TGG | - | chr8_2:20192553-20192572 | None:intergenic | 40.0% |
| ! | ATGATGATGAATGTGTGTGG+TGG | - | chr8_2:20192563-20192582 | None:intergenic | 40.0% |
| !! | GTCTTTGATTTTCACAGTGC+TGG | - | chr8_2:20192763-20192782 | None:intergenic | 40.0% |
| ! | TGATTTTCGGCGTTTTGTGA+CGG | + | chr8_2:20192854-20192873 | Msa1239080:CDS | 40.0% |
| TGTTGTGGTAGTAGTAGTGA+CGG | + | chr8_2:20192906-20192925 | Msa1239080:CDS | 40.0% | |
| !!! | TTATTTTTTCTGTCGGTGGG+AGG | + | chr8_2:20193361-20193380 | Msa1239080:intron | 40.0% |
| !! | CTGGACTTTGTTGTTCATCT+TGG | - | chr8_2:20193721-20193740 | None:intergenic | 40.0% |
| GAGTCATGCAAAATTTGACC+TGG | + | chr8_2:20194284-20194303 | Msa1239080:CDS | 40.0% | |
| ! | GACATTCATCTAAGGTTACC+AGG | - | chr8_2:20194305-20194324 | None:intergenic | 40.0% |
| TAAAGACGACGATAAGGAAG+AGG | + | chr8_2:20194362-20194381 | Msa1239080:CDS | 40.0% | |
| AACCAAAAGAGGAACGATGA+AGG | + | chr8_2:20194540-20194559 | Msa1239080:CDS | 40.0% | |
| ! | ATCCTTCATCGTTCCTCTTT+TGG | - | chr8_2:20194545-20194564 | None:intergenic | 40.0% |
| GAACGATGAAGGATTTGAGT+TGG | + | chr8_2:20194551-20194570 | Msa1239080:CDS | 40.0% | |
| AAGGAAATGGATAGGAGAGA+TGG | + | chr8_2:20194660-20194679 | Msa1239080:CDS | 40.0% | |
| AGGAAATGGATAGGAGAGAT+GGG | + | chr8_2:20194661-20194680 | Msa1239080:CDS | 40.0% | |
| TGAGATGGTTATGGAGATTG+AGG | + | chr8_2:20194710-20194729 | Msa1239080:CDS | 40.0% | |
| !! | AACGCAGTTTTTGTGCTGTT+TGG | + | chr8_2:20194809-20194828 | Msa1239080:three_prime_UTR | 40.0% |
| ! | CATTCTTGGTCTTCTCTCCA+TGG | - | chr8_2:20192430-20192449 | None:intergenic | 45.0% |
| ! | ATAAGGTTCGTGGTAGTGAG+AGG | - | chr8_2:20192668-20192687 | None:intergenic | 45.0% |
| AACTTGCGTGATAAGGTTCG+TGG | - | chr8_2:20192678-20192697 | None:intergenic | 45.0% | |
| AGAACAAGCCAACGATGCAA+AGG | + | chr8_2:20192714-20192733 | Msa1239080:CDS | 45.0% | |
| CTCTTTCACCTTTGCATCGT+TGG | - | chr8_2:20192725-20192744 | None:intergenic | 45.0% | |
| !! | AAAGGTGATAATGGCGGTGA+TGG | - | chr8_2:20192834-20192853 | None:intergenic | 45.0% |
| !! | TTTTGTGACGGAATCGTCGA+CGG | + | chr8_2:20192866-20192885 | Msa1239080:CDS | 45.0% |
| !! | ACTACTGCAACGACTTGTTG+TGG | + | chr8_2:20192891-20192910 | Msa1239080:CDS | 45.0% |
| GTAGTGACGGTGATTCTAGT+TGG | + | chr8_2:20192919-20192938 | Msa1239080:CDS | 45.0% | |
| ! | GGTGATTCTAGTTGGAGTGA+CGG | + | chr8_2:20192927-20192946 | Msa1239080:CDS | 45.0% |
| GCAACTCGAAGAACTGAAAC+TGG | - | chr8_2:20193740-20193759 | None:intergenic | 45.0% | |
| !! | GAGAAGTGTCCATGCTTCAA+AGG | - | chr8_2:20193907-20193926 | None:intergenic | 45.0% |
| AAATGGATAGGAGAGATGGG+TGG | + | chr8_2:20194664-20194683 | Msa1239080:CDS | 45.0% | |
| TGATGAGGAGCTAGATGAGA+TGG | + | chr8_2:20194695-20194714 | Msa1239080:CDS | 45.0% | |
| GGAGCTAGATGAGATGGTTA+TGG | + | chr8_2:20194701-20194720 | Msa1239080:CDS | 45.0% | |
| !! | ATATATTAAAAAAATAATGA+TGG | + | chr8_2:20193312-20193331 | Msa1239080:intron | 5.0% |
| AACGACGACGTTGAAGAGAG+TGG | + | chr8_2:20192981-20193000 | Msa1239080:CDS | 50.0% | |
| ACGACGACGTTGAAGAGAGT+GGG | + | chr8_2:20192982-20193001 | Msa1239080:CDS | 50.0% | |
| ! | TTTTGTCGGCAAGGATTCGG+TGG | + | chr8_2:20193025-20193044 | Msa1239080:CDS | 50.0% |
| ! | ATTCGGTGGCATCGTTCGTT+GGG | + | chr8_2:20193039-20193058 | Msa1239080:CDS | 50.0% |
| ! | CGATATGTGTCGGTGCGTAT+TGG | - | chr8_2:20193973-20193992 | None:intergenic | 50.0% |
| AGACGACGATAAGGAAGAGG+AGG | + | chr8_2:20194365-20194384 | Msa1239080:CDS | 50.0% | |
| ATAGGAGAGATGGGTGGAGT+AGG | + | chr8_2:20194670-20194689 | Msa1239080:CDS | 50.0% | |
| TGGGTGGAGTAGGTTTGATG+AGG | + | chr8_2:20194680-20194699 | Msa1239080:CDS | 50.0% | |
| !! | GGTAGTGAGAGGATGGTGGA+GGG | - | chr8_2:20192657-20192676 | None:intergenic | 55.0% |
| ! | TGGTAGTGAGAGGATGGTGG+AGG | - | chr8_2:20192658-20192677 | None:intergenic | 55.0% |
| ! | TCGTGGTAGTGAGAGGATGG+TGG | - | chr8_2:20192661-20192680 | None:intergenic | 55.0% |
| ! | GGTTCGTGGTAGTGAGAGGA+TGG | - | chr8_2:20192664-20192683 | None:intergenic | 55.0% |
| !! | GATTCGGTGGCATCGTTCGT+TGG | + | chr8_2:20193038-20193057 | Msa1239080:CDS | 55.0% |
| TTCGGTGGCATCGTTCGTTG+GGG | + | chr8_2:20193040-20193059 | Msa1239080:CDS | 55.0% | |
| CTCTATACAACTGCCCCAGC+AGG | - | chr8_2:20193393-20193412 | None:intergenic | 55.0% | |
| CACGACACGTGTCCGATACT+GGG | - | chr8_2:20193943-20193962 | None:intergenic | 55.0% | |
| ACACGACACGTGTCCGATAC+TGG | - | chr8_2:20193944-20193963 | None:intergenic | 55.0% | |
| !! | GGCGGTGATGGAATCGTCGA+TGG | - | chr8_2:20192822-20192841 | None:intergenic | 60.0% |
| GGCATCGTTCGTTGGGGACA+AGG | + | chr8_2:20193046-20193065 | Msa1239080:CDS | 60.0% | |
| GTGGGAGGCTACTGCCTGCT+GGG | + | chr8_2:20193376-20193395 | Msa1239080:intron | 65.0% | |
| TGGGAGGCTACTGCCTGCTG+GGG | + | chr8_2:20193377-20193396 | Msa1239080:intron | 65.0% | |
| GGTGGGAGGCTACTGCCTGC+TGG | + | chr8_2:20193375-20193394 | Msa1239080:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 20192159 | 20194870 | 20192159 | ID=Msa1239080;Name=Msa1239080 |
| chr8_2 | mRNA | 20192159 | 20194870 | 20192159 | ID=Msa1239080-mRNA-1;Parent=Msa1239080;Name=Msa1239080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=240|1|1|1|1|1|3|94|434 |
| chr8_2 | exon | 20192159 | 20193067 | 20192159 | ID=Msa1239080-mRNA-1:exon:7389;Parent=Msa1239080-mRNA-1 |
| chr8_2 | exon | 20193704 | 20193806 | 20193704 | ID=Msa1239080-mRNA-1:exon:7390;Parent=Msa1239080-mRNA-1 |
| chr8_2 | exon | 20194244 | 20194870 | 20194244 | ID=Msa1239080-mRNA-1:exon:7391;Parent=Msa1239080-mRNA-1 |
| chr8_2 | five_prime_UTR | 20192159 | 20192398 | 20192159 | ID=Msa1239080-mRNA-1:five_prime_utr;Parent=Msa1239080-mRNA-1 |
| chr8_2 | CDS | 20192399 | 20193067 | 20192399 | ID=Msa1239080-mRNA-1:cds;Parent=Msa1239080-mRNA-1 |
| chr8_2 | CDS | 20193704 | 20193806 | 20193704 | ID=Msa1239080-mRNA-1:cds;Parent=Msa1239080-mRNA-1 |
| chr8_2 | CDS | 20194244 | 20194776 | 20194244 | ID=Msa1239080-mRNA-1:cds;Parent=Msa1239080-mRNA-1 |
| chr8_2 | three_prime_UTR | 20194777 | 20194870 | 20194777 | ID=Msa1239080-mRNA-1:three_prime_utr;Parent=Msa1239080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
