Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281360 | XP_013463251.1 | 90.663 | 332 | 10 | 1 | 1 | 311 | 1 | 332 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281360 | sp|A3KPF2|ANM14_ARATH | 76.285 | 253 | 59 | 1 | 60 | 311 | 87 | 339 | 1.11e-140 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281360 | A0A072V7D9 | 90.663 | 332 | 10 | 1 | 1 | 311 | 1 | 332 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0281360 | 0.811321 | 7.423529e-51 | -8.615850e-47 |
| Msa0005000 | Msa0281360 | -0.806433 | 8.246617e-50 | -8.615850e-47 |
| Msa0008340 | Msa0281360 | 0.800610 | 1.329423e-48 | -8.615850e-47 |
| Msa0026430 | Msa0281360 | 0.800274 | 1.556307e-48 | -8.615850e-47 |
| Msa0032370 | Msa0281360 | 0.841747 | 3.939133e-58 | -8.615850e-47 |
| Msa0041690 | Msa0281360 | 0.810230 | 1.278097e-50 | -8.615850e-47 |
| Msa0047980 | Msa0281360 | 0.834655 | 2.644026e-56 | -8.615850e-47 |
| Msa0054530 | Msa0281360 | 0.821803 | 3.324203e-53 | -8.615850e-47 |
| Msa0068430 | Msa0281360 | 0.803585 | 3.249470e-49 | -8.615850e-47 |
| Msa0069330 | Msa0281360 | 0.826478 | 2.653950e-54 | -8.615850e-47 |
| Msa0074750 | Msa0281360 | 0.802365 | 5.808429e-49 | -8.615850e-47 |
| Msa0089360 | Msa0281360 | 0.804675 | 1.928127e-49 | -8.615850e-47 |
| Msa0092170 | Msa0281360 | 0.803079 | 4.136470e-49 | -8.615850e-47 |
| Msa0094130 | Msa0281360 | 0.826471 | 2.664438e-54 | -8.615850e-47 |
| Msa0096670 | Msa0281360 | 0.808780 | 2.617987e-50 | -8.615850e-47 |
| Msa0098390 | Msa0281360 | -0.808516 | 2.980691e-50 | -8.615850e-47 |
| Msa0104550 | Msa0281360 | 0.820219 | 7.700432e-53 | -8.615850e-47 |
| Msa0122590 | Msa0281360 | 0.804118 | 2.518088e-49 | -8.615850e-47 |
| Msa0126230 | Msa0281360 | 0.808633 | 2.814216e-50 | -8.615850e-47 |
| Msa0131700 | Msa0281360 | 0.815665 | 8.230599e-52 | -8.615850e-47 |
| Msa0138210 | Msa0281360 | 0.819095 | 1.390010e-52 | -8.615850e-47 |
| Msa0140300 | Msa0281360 | 0.816171 | 6.345393e-52 | -8.615850e-47 |
| Msa0142480 | Msa0281360 | 0.820255 | 7.553204e-53 | -8.615850e-47 |
| Msa0148100 | Msa0281360 | 0.811881 | 5.608051e-51 | -8.615850e-47 |
| Msa0152400 | Msa0281360 | 0.804699 | 1.906078e-49 | -8.615850e-47 |
| Msa0183420 | Msa0281360 | 0.801880 | 7.307872e-49 | -8.615850e-47 |
| Msa0205850 | Msa0281360 | 0.804471 | 2.126627e-49 | -8.615850e-47 |
| Msa0212930 | Msa0281360 | 0.818815 | 1.610146e-52 | -8.615850e-47 |
| Msa0225750 | Msa0281360 | 0.814314 | 1.640587e-51 | -8.615850e-47 |
| Msa0228480 | Msa0281360 | 0.825705 | 4.051389e-54 | -8.615850e-47 |
| Msa0236770 | Msa0281360 | 0.818706 | 1.703956e-52 | -8.615850e-47 |
| Msa0241800 | Msa0281360 | 0.806043 | 9.963769e-50 | -8.615850e-47 |
| Msa0245940 | Msa0281360 | 0.811467 | 6.900620e-51 | -8.615850e-47 |
| Msa0249100 | Msa0281360 | 0.806598 | 7.608864e-50 | -8.615850e-47 |
| Msa0253200 | Msa0281360 | 0.809760 | 1.613327e-50 | -8.615850e-47 |
| Msa0260830 | Msa0281360 | 0.822066 | 2.888996e-53 | -8.615850e-47 |
| Msa0279390 | Msa0281360 | 0.818097 | 2.341859e-52 | -8.615850e-47 |
| Msa0281360 | Msa0284520 | 0.813767 | 2.167017e-51 | -8.615850e-47 |
| Msa0281360 | Msa0292030 | 0.806942 | 6.439049e-50 | -8.615850e-47 |
| Msa0281360 | Msa0307860 | 0.805710 | 1.170572e-49 | -8.615850e-47 |
| Msa0281360 | Msa0311700 | 0.814583 | 1.431106e-51 | -8.615850e-47 |
| Msa0281360 | Msa0318880 | 0.839978 | 1.146237e-57 | -8.615850e-47 |
| Msa0281360 | Msa0333920 | 0.811123 | 8.195213e-51 | -8.615850e-47 |
| Msa0281360 | Msa0334040 | 0.813247 | 2.819412e-51 | -8.615850e-47 |
| Msa0281360 | Msa0381080 | 0.800617 | 1.325314e-48 | -8.615850e-47 |
| Msa0281360 | Msa0387250 | 0.826021 | 3.408842e-54 | -8.615850e-47 |
| Msa0281360 | Msa0387950 | 0.817453 | 3.271760e-52 | -8.615850e-47 |
| Msa0281360 | Msa0390960 | 0.801779 | 7.664429e-49 | -8.615850e-47 |
| Msa0281360 | Msa0426330 | 0.802952 | 4.393950e-49 | -8.615850e-47 |
| Msa0281360 | Msa0427220 | 0.819817 | 9.515313e-53 | -8.615850e-47 |
| Msa0281360 | Msa0430870 | 0.810592 | 1.067914e-50 | -8.615850e-47 |
| Msa0281360 | Msa0431410 | 0.832611 | 8.564979e-56 | -8.615850e-47 |
| Msa0281360 | Msa0432070 | 0.871875 | 4.894332e-67 | -8.615850e-47 |
| Msa0281360 | Msa0433610 | 0.835536 | 1.584626e-56 | -8.615850e-47 |
| Msa0281360 | Msa0448750 | 0.806336 | 8.643416e-50 | -8.615850e-47 |
| Msa0281360 | Msa0449820 | 0.816100 | 6.579864e-52 | -8.615850e-47 |
| Msa0281360 | Msa0449830 | 0.811273 | 7.604618e-51 | -8.615850e-47 |
| Msa0281360 | Msa0485420 | 0.814390 | 1.578584e-51 | -8.615850e-47 |
| Msa0281360 | Msa0489100 | 0.818370 | 2.031365e-52 | -8.615850e-47 |
| Msa0281360 | Msa0497420 | 0.812186 | 4.813135e-51 | -8.615850e-47 |
| Msa0281360 | Msa0518960 | 0.810789 | 9.681011e-51 | -8.615850e-47 |
| Msa0281360 | Msa0546300 | 0.846633 | 1.921650e-59 | -8.615850e-47 |
| Msa0281360 | Msa0555400 | 0.807803 | 4.228279e-50 | -8.615850e-47 |
| Msa0281360 | Msa0560470 | 0.844021 | 9.781764e-59 | -8.615850e-47 |
| Msa0281360 | Msa0585900 | 0.827675 | 1.372544e-54 | -8.615850e-47 |
| Msa0281360 | Msa0591540 | 0.830024 | 3.705581e-55 | -8.615850e-47 |
| Msa0281360 | Msa0625790 | 0.821487 | 3.933527e-53 | -8.615850e-47 |
| Msa0281360 | Msa0628500 | 0.804040 | 2.614474e-49 | -8.615850e-47 |
| Msa0281360 | Msa0638610 | 0.805939 | 1.047692e-49 | -8.615850e-47 |
| Msa0281360 | Msa0639120 | 0.825040 | 5.821697e-54 | -8.615850e-47 |
| Msa0281360 | Msa0642720 | 0.847422 | 1.168349e-59 | -8.615850e-47 |
| Msa0281360 | Msa0650070 | 0.801530 | 8.623188e-49 | -8.615850e-47 |
| Msa0281360 | Msa0650190 | 0.807930 | 3.972958e-50 | -8.615850e-47 |
| Msa0281360 | Msa0657750 | 0.834636 | 2.673104e-56 | -8.615850e-47 |
| Msa0281360 | Msa0663120 | 0.823435 | 1.386985e-53 | -8.615850e-47 |
| Msa0281360 | Msa0681800 | 0.809543 | 1.796136e-50 | -8.615850e-47 |
| Msa0281360 | Msa0689760 | 0.807091 | 5.985628e-50 | -8.615850e-47 |
| Msa0281360 | Msa0697400 | 0.815772 | 7.790640e-52 | -8.615850e-47 |
| Msa0281360 | Msa0697690 | 0.813932 | 1.992101e-51 | -8.615850e-47 |
| Msa0281360 | Msa0711130 | 0.803207 | 3.891317e-49 | -8.615850e-47 |
| Msa0281360 | Msa0711490 | 0.810689 | 1.017591e-50 | -8.615850e-47 |
| Msa0281360 | Msa0713820 | 0.811728 | 6.056357e-51 | -8.615850e-47 |
| Msa0281360 | Msa0716860 | 0.809741 | 1.628488e-50 | -8.615850e-47 |
| Msa0281360 | Msa0730900 | 0.808318 | 3.284739e-50 | -8.615850e-47 |
| Msa0281360 | Msa0734960 | 0.809328 | 1.998303e-50 | -8.615850e-47 |
| Msa0281360 | Msa0740640 | 0.833336 | 5.653726e-56 | -8.615850e-47 |
| Msa0281360 | Msa0752510 | 0.801406 | 9.139555e-49 | -8.615850e-47 |
| Msa0281360 | Msa0756060 | 0.811085 | 8.350083e-51 | -8.615850e-47 |
| Msa0281360 | Msa0767100 | 0.827959 | 1.172998e-54 | -8.615850e-47 |
| Msa0281360 | Msa0767220 | 0.824193 | 9.214085e-54 | -8.615850e-47 |
| Msa0281360 | Msa0784060 | 0.817182 | 3.766271e-52 | -8.615850e-47 |
| Msa0281360 | Msa0789560 | 0.803390 | 3.566751e-49 | -8.615850e-47 |
| Msa0281360 | Msa0794320 | 0.815748 | 7.885427e-52 | -8.615850e-47 |
| Msa0281360 | Msa0820890 | 0.823355 | 1.448189e-53 | -8.615850e-47 |
| Msa0281360 | Msa0828920 | 0.846837 | 1.689445e-59 | -8.615850e-47 |
| Msa0281360 | Msa0830210 | 0.803112 | 4.072879e-49 | -8.615850e-47 |
| Msa0281360 | Msa0835280 | 0.812691 | 3.732381e-51 | -8.615850e-47 |
| Msa0281360 | Msa0882510 | 0.813445 | 2.550216e-51 | -8.615850e-47 |
| Msa0281360 | Msa0893810 | 0.805735 | 1.156612e-49 | -8.615850e-47 |
| Msa0281360 | Msa0908050 | 0.815190 | 1.049415e-51 | -8.615850e-47 |
| Msa0281360 | Msa0930780 | 0.825317 | 5.006728e-54 | -8.615850e-47 |
| Msa0281360 | Msa0931950 | 0.812886 | 3.382182e-51 | -8.615850e-47 |
| Msa0281360 | Msa0933450 | 0.811404 | 7.122491e-51 | -8.615850e-47 |
| Msa0281360 | Msa0959010 | 0.804297 | 2.311605e-49 | -8.615850e-47 |
| Msa0281360 | Msa0960160 | 0.818495 | 1.903084e-52 | -8.615850e-47 |
| Msa0281360 | Msa0981310 | 0.806565 | 7.733554e-50 | -8.615850e-47 |
| Msa0281360 | Msa0993530 | 0.823556 | 1.299556e-53 | -8.615850e-47 |
| Msa0281360 | Msa1020940 | 0.809168 | 2.161602e-50 | -8.615850e-47 |
| Msa0281360 | Msa1060220 | 0.833125 | 6.383267e-56 | -8.615850e-47 |
| Msa0281360 | Msa1091560 | 0.809685 | 1.674821e-50 | -8.615850e-47 |
| Msa0281360 | Msa1095790 | 0.832002 | 1.211617e-55 | -8.615850e-47 |
| Msa0281360 | Msa1116690 | 0.807118 | 5.908953e-50 | -8.615850e-47 |
| Msa0281360 | Msa1122780 | 0.808778 | 2.620320e-50 | -8.615850e-47 |
| Msa0281360 | Msa1140590 | 0.819490 | 1.130172e-52 | -8.615850e-47 |
| Msa0281360 | Msa1175330 | 0.836623 | 8.395529e-57 | -8.615850e-47 |
| Msa0281360 | Msa1179940 | 0.821657 | 3.593322e-53 | -8.615850e-47 |
| Msa0281360 | Msa1179970 | 0.822816 | 1.934867e-53 | -8.615850e-47 |
| Msa0281360 | Msa1185130 | 0.806069 | 9.836737e-50 | -8.615850e-47 |
| Msa0281360 | Msa1185540 | 0.818495 | 1.903065e-52 | -8.615850e-47 |
| Msa0281360 | Msa1201120 | 0.804632 | 1.968323e-49 | -8.615850e-47 |
| Msa0281360 | Msa1205480 | 0.822742 | 2.013497e-53 | -8.615850e-47 |
| Msa0281360 | Msa1205590 | 0.804309 | 2.297685e-49 | -8.615850e-47 |
| Msa0281360 | Msa1206100 | 0.810798 | 9.635489e-51 | -8.615850e-47 |
| Msa0281360 | Msa1211340 | 0.804044 | 2.609748e-49 | -8.615850e-47 |
| Msa0281360 | Msa1228890 | 0.835966 | 1.233498e-56 | -8.615850e-47 |
| Msa0281360 | Msa1235010 | 0.815166 | 1.062327e-51 | -8.615850e-47 |
| Msa0281360 | Msa1235630 | 0.843185 | 1.637157e-58 | -8.615850e-47 |
| Msa0281360 | Msa1239080 | 0.801929 | 7.139391e-49 | -8.615850e-47 |
| Msa0281360 | Msa1255190 | 0.836000 | 1.209237e-56 | -8.615850e-47 |
| Msa0281360 | Msa1259640 | 0.805804 | 1.118299e-49 | -8.615850e-47 |
| Msa0281360 | Msa1263060 | 0.803295 | 3.731174e-49 | -8.615850e-47 |
| Msa0281360 | Msa1280560 | 0.848551 | 5.703720e-60 | -8.615850e-47 |
| Msa0281360 | Msa1283990 | 0.821170 | 4.654460e-53 | -8.615850e-47 |
| Msa0281360 | Msa1295630 | 0.856563 | 2.956420e-62 | -8.615850e-47 |
| Msa0281360 | Msa1299360 | 0.855989 | 4.355302e-62 | -8.615850e-47 |
| Msa0281360 | Msa1309130 | 0.801881 | 7.303521e-49 | -8.615850e-47 |
| Msa0281360 | Msa1315870 | 0.824467 | 7.947453e-54 | -8.615850e-47 |
| Msa0281360 | Msa1318120 | 0.808736 | 2.674477e-50 | -8.615850e-47 |
| Msa0281360 | Msa1319770 | 0.805667 | 1.195201e-49 | -8.615850e-47 |
| Msa0281360 | Msa1327760 | 0.828557 | 8.412770e-55 | -8.615850e-47 |
| Msa0281360 | Msa1329550 | 0.809967 | 1.456397e-50 | -8.615850e-47 |
| Msa0281360 | Msa1329790 | 0.804656 | 1.945713e-49 | -8.615850e-47 |
| Msa0281360 | Msa1338250 | 0.807612 | 4.643129e-50 | -8.615850e-47 |
| Msa0281360 | Msa1340020 | 0.803531 | 3.334599e-49 | -8.615850e-47 |
| Msa0281360 | Msa1346740 | 0.803778 | 2.963616e-49 | -8.615850e-47 |
| Msa0281360 | Msa1348360 | 0.828049 | 1.115656e-54 | -8.615850e-47 |
| Msa0281360 | Msa1365150 | 0.806578 | 7.685437e-50 | -8.615850e-47 |
| Msa0281360 | Msa1367880 | 0.808307 | 3.303387e-50 | -8.615850e-47 |
| Msa0281360 | Msa1393800 | 0.813872 | 2.053782e-51 | -8.615850e-47 |
| Msa0281360 | Msa1404560 | 0.821548 | 3.809067e-53 | -8.615850e-47 |
| Msa0281360 | Msa1416390 | 0.811317 | 7.437560e-51 | -8.615850e-47 |
| Msa0281360 | Msa1420250 | 0.808211 | 3.461933e-50 | -8.615850e-47 |
| Msa0281360 | Msa1426910 | 0.844560 | 7.008198e-59 | -8.615850e-47 |
| Msa0281360 | Msa1431040 | 0.830123 | 3.505632e-55 | -8.615850e-47 |
| Msa0281360 | Msa1435260 | 0.855178 | 7.507338e-62 | -8.615850e-47 |
| Msa0281360 | Msa1438450 | 0.809857 | 1.538125e-50 | -8.615850e-47 |
| Msa0281360 | Msa1459180 | 0.805998 | 1.018133e-49 | -8.615850e-47 |
| Msa0281360 | Msa1465300 | 0.806601 | 7.598795e-50 | -8.615850e-47 |
| Msa0281360 | Msa1466460 | 0.850467 | 1.666598e-60 | -8.615850e-47 |
| Msa0281360 | Msa1466590 | 0.846074 | 2.728926e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281360 | MtrunA17_Chr2g0295951 | 90.663 | 332 | 10 | 1 | 1 | 311 | 1 | 332 | 0.0 | 612 |
| Msa0281360 | MtrunA17_Chr4g0067351 | 71.687 | 332 | 71 | 3 | 1 | 311 | 1 | 330 | 1.70e-161 | 461 |
| Msa0281360 | MtrunA17_Chr2g0306801 | 46.316 | 190 | 93 | 3 | 123 | 304 | 26 | 214 | 5.60e-48 | 164 |
| Msa0281360 | MtrunA17_Chr1g0165131 | 42.932 | 191 | 99 | 4 | 123 | 311 | 79 | 261 | 4.32e-44 | 155 |
| Msa0281360 | MtrunA17_Chr6g0488051 | 40.704 | 199 | 109 | 5 | 111 | 307 | 53 | 244 | 2.16e-40 | 145 |
| Msa0281360 | MtrunA17_Chr1g0211591 | 39.665 | 179 | 88 | 5 | 147 | 311 | 4 | 176 | 5.86e-33 | 122 |
| Msa0281360 | MtrunA17_Chr3g0082021 | 40.828 | 169 | 82 | 4 | 123 | 273 | 256 | 424 | 7.92e-27 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281360 | AT5G49020.1 | 76.285 | 253 | 59 | 1 | 60 | 311 | 87 | 339 | 1.13e-141 | 410 |
| Msa0281360 | AT5G49020.2 | 75.794 | 252 | 60 | 1 | 60 | 311 | 87 | 337 | 3.21e-140 | 406 |
| Msa0281360 | AT3G06930.2 | 77.236 | 246 | 55 | 1 | 66 | 311 | 92 | 336 | 7.29e-139 | 403 |
| Msa0281360 | AT3G06930.1 | 77.236 | 246 | 55 | 1 | 66 | 311 | 92 | 336 | 8.23e-139 | 403 |
| Msa0281360 | AT1G04870.2 | 49.007 | 151 | 76 | 1 | 123 | 273 | 35 | 184 | 2.60e-45 | 158 |
| Msa0281360 | AT3G20020.1 | 41.885 | 191 | 101 | 4 | 123 | 311 | 83 | 265 | 1.68e-43 | 154 |
| Msa0281360 | AT3G20020.3 | 41.885 | 191 | 101 | 4 | 123 | 311 | 83 | 265 | 2.22e-43 | 154 |
| Msa0281360 | AT4G29510.1 | 39.691 | 194 | 108 | 5 | 116 | 307 | 65 | 251 | 1.99e-39 | 143 |
| Msa0281360 | AT2G19670.1 | 37.696 | 191 | 112 | 4 | 118 | 307 | 43 | 227 | 8.45e-37 | 135 |
| Msa0281360 | AT3G20020.2 | 38.220 | 191 | 86 | 4 | 123 | 311 | 83 | 243 | 3.57e-35 | 132 |
| Msa0281360 | AT3G12270.1 | 37.688 | 199 | 105 | 5 | 123 | 310 | 245 | 435 | 2.90e-29 | 117 |
| Msa0281360 | AT1G04870.1 | 46.341 | 82 | 43 | 1 | 192 | 273 | 1 | 81 | 1.37e-17 | 81.6 |
Find 72 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAGCAACAAAACTATTT+TGG | 0.213327 | 2_3:-16749420 | Msa0281360:CDS |
| TATCTACTCAGGGGCTGTTC+TGG | 0.287988 | 2_3:-16749440 | Msa0281360:intron |
| TGTTCATCTTCCACTTCTTC+AGG | 0.304412 | 2_3:-16753644 | Msa0281360:intron |
| GAGAATCGCACTGATTTCTT+TGG | 0.333818 | 2_3:-16751274 | Msa0281360:CDS |
| TGAATTCCTTCTTCCATTGT+TGG | 0.342206 | 2_3:+16752254 | None:intergenic |
| CTTACACAAGACTGCTTTCA+AGG | 0.356479 | 2_3:-16749382 | Msa0281360:CDS |
| ATCATATTATGCTGCTGTTA+TGG | 0.361691 | 2_3:-16751296 | Msa0281360:CDS |
| ATCTCCATCTTCTGCTTCGC+CGG | 0.368253 | 2_3:-16753731 | Msa0281360:CDS |
| GCCATTACATTAGCTCCATT+TGG | 0.378102 | 2_3:+16751525 | None:intergenic |
| TCATCAACAAAACATGTTGC+AGG | 0.382602 | 2_3:-16751427 | Msa0281360:CDS |
| TTTGTCGTTATTTGCTGCTC+AGG | 0.389146 | 2_3:-16751215 | Msa0281360:intron |
| GTTTGTCGAAATTGCTAGTA+AGG | 0.390099 | 2_3:-16750058 | Msa0281360:intron |
| GGCAAAATGTTTCCAACATC+GGG | 0.402548 | 2_3:-16750549 | Msa0281360:CDS |
| TGAACCAGACATCTTATTCC+AGG | 0.407021 | 2_3:-16752333 | Msa0281360:intron |
| AGTGTTTCTGCTACTGAGTT+CGG | 0.421318 | 2_3:-16753834 | Msa0281360:five_prime_UTR |
| TATAGCTGGGAACCCACTAC+TGG | 0.429302 | 2_3:-16751039 | Msa0281360:CDS |
| CTTATGTTATTGCCAGAGAT+AGG | 0.431170 | 2_3:-16750587 | Msa0281360:CDS |
| TGCAATAGAAGCATCTGAAA+TGG | 0.453461 | 2_3:-16751081 | Msa0281360:CDS |
| GGGCTCAGATATCAGAATAT+CGG | 0.456942 | 2_3:+16750861 | None:intergenic |
| ATCAGAATATCGGCTTTCTC+TGG | 0.464533 | 2_3:+16750871 | None:intergenic |
| CTTGAAAGCAGTCTTGTGTA+AGG | 0.467662 | 2_3:+16749383 | None:intergenic |
| AAGAAGGAATTCAATGTTCA+AGG | 0.470542 | 2_3:-16752244 | Msa0281360:intron |
| GTTGATGTTGGTGCTGGTAG+TGG | 0.478713 | 2_3:-16751241 | Msa0281360:CDS |
| TATGCACACAAACTTATAGC+TGG | 0.479561 | 2_3:-16751053 | Msa0281360:CDS |
| TTCTATTCAGTTTAGAAATG+AGG | 0.487369 | 2_3:-16752305 | Msa0281360:CDS |
| GCTCATTGACGGATGCTAAA+GGG | 0.487569 | 2_3:+16753761 | None:intergenic |
| GTCGGAGACAATGGAGGAAT+CGG | 0.494836 | 2_3:-16753812 | Msa0281360:exon |
| TCTCCATCTTCTGCTTCGCC+GGG | 0.510682 | 2_3:-16753730 | Msa0281360:CDS |
| CAACCAAACCTTCCCGATGT+TGG | 0.511707 | 2_3:+16750537 | None:intergenic |
| AGCTCATTGACGGATGCTAA+AGG | 0.515079 | 2_3:+16753760 | None:intergenic |
| CTGAGTTCGGTCGGAGACAA+TGG | 0.516325 | 2_3:-16753821 | Msa0281360:exon |
| TAGAATCGAACCTGAAGAAG+TGG | 0.523074 | 2_3:+16753634 | None:intergenic |
| GTTAGTCAATGAAAGAATGC+TGG | 0.528531 | 2_3:-16750613 | Msa0281360:CDS |
| ACTCCCGGCGAAGCAGAAGA+TGG | 0.533903 | 2_3:+16753727 | None:intergenic |
| TATTCTGATATCTGAGCCCA+TGG | 0.536020 | 2_3:-16750857 | Msa0281360:CDS |
| TGTATTCCAACAATGGAAGA+AGG | 0.538629 | 2_3:-16752260 | Msa0281360:CDS |
| GCGGTGAGGCGAAGAACTCC+CGG | 0.539359 | 2_3:+16753712 | None:intergenic |
| TCAGGAGGGAACATACCAAA+TGG | 0.542588 | 2_3:-16751540 | Msa0281360:intron |
| ACCAAATGGAGCTAATGTAA+TGG | 0.542790 | 2_3:-16751526 | Msa0281360:CDS |
| AACAAATATTCGTCACTGAA+AGG | 0.543394 | 2_3:+16750078 | None:intergenic |
| CATTCTTTCATTGACTAACA+AGG | 0.545010 | 2_3:+16750617 | None:intergenic |
| GAACCAGACATCTTATTCCA+GGG | 0.551770 | 2_3:-16752332 | Msa0281360:intron |
| TCCATTGTGTATTCCAACAA+TGG | 0.552129 | 2_3:-16752267 | Msa0281360:CDS |
| GGTCGTGTAGTAGTTGATGT+TGG | 0.555296 | 2_3:-16751253 | Msa0281360:CDS |
| TGGCAAAATGTTTCCAACAT+CGG | 0.556248 | 2_3:-16750550 | Msa0281360:CDS |
| TTGCAGGACTACGTGAGGAC+AGG | 0.564349 | 2_3:-16751411 | Msa0281360:intron |
| TTGTTGGAATACACAATGGA+AGG | 0.564370 | 2_3:+16752270 | None:intergenic |
| GGAACCCACTACTGGGTCAA+CGG | 0.572675 | 2_3:-16751031 | Msa0281360:CDS |
| GTAGTAGTTGATGTTGGTGC+TGG | 0.580478 | 2_3:-16751247 | Msa0281360:CDS |
| ATGCACACAAACTTATAGCT+GGG | 0.580939 | 2_3:-16751052 | Msa0281360:CDS |
| GTGGTGAATTTGAAGAGTAT+CGG | 0.582479 | 2_3:+16753690 | None:intergenic |
| TCCATTGTTGGAATACACAA+TGG | 0.591389 | 2_3:+16752266 | None:intergenic |
| AAACTGAATAGAAACTCCCC+TGG | 0.597537 | 2_3:+16752315 | None:intergenic |
| AAATGTTTCCAACATCGGGA+AGG | 0.598804 | 2_3:-16750545 | Msa0281360:intron |
| TTATATATACAGGTTATCAA+AGG | 0.599821 | 2_3:-16750916 | Msa0281360:intron |
| AGATGATGACAGCTCATTGA+CGG | 0.599958 | 2_3:+16753750 | None:intergenic |
| AACCAGACATCTTATTCCAG+GGG | 0.603239 | 2_3:-16752331 | Msa0281360:intron |
| TTTCTGCTACTGAGTTCGGT+CGG | 0.613165 | 2_3:-16753830 | Msa0281360:five_prime_UTR |
| TTTGAAGAGTATCGGCGGTG+AGG | 0.613780 | 2_3:+16753698 | None:intergenic |
| TTGAAAGCAGTCTTGTGTAA+GGG | 0.617355 | 2_3:+16749384 | None:intergenic |
| ATAGCTGGGAACCCACTACT+GGG | 0.619031 | 2_3:-16751038 | Msa0281360:CDS |
| AGGAATCGGCGGCGATAAAG+CGG | 0.627858 | 2_3:-16753798 | Msa0281360:CDS |
| GTAATCCGTTGACCCAGTAG+TGG | 0.628556 | 2_3:+16751026 | None:intergenic |
| TTACTTCTGTAGGATTCACA+TGG | 0.636542 | 2_3:-16750103 | Msa0281360:intron |
| TAATCCGTTGACCCAGTAGT+GGG | 0.647291 | 2_3:+16751027 | None:intergenic |
| ACATGTTGCAGGACTACGTG+AGG | 0.662367 | 2_3:-16751416 | Msa0281360:CDS |
| GGTTATCAAAGGCAGAGTCG+AGG | 0.667136 | 2_3:-16750905 | Msa0281360:CDS |
| GGAGACAATGGAGGAATCGG+CGG | 0.672177 | 2_3:-16753809 | Msa0281360:exon |
| AGTTCGGTCGGAGACAATGG+AGG | 0.680790 | 2_3:-16753818 | Msa0281360:exon |
| GTGAATTTGAAGAGTATCGG+CGG | 0.682974 | 2_3:+16753693 | None:intergenic |
| ATTCTGATATCTGAGCCCAT+GGG | 0.685772 | 2_3:-16750856 | Msa0281360:intron |
| AAGCAATCTGATGAGAATCG+TGG | 0.706879 | 2_3:+16753671 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTAATAATAAATATGT+TGG | - | chr2_3:16749951-16749970 | Msa0281360:intron | 10.0% |
| !! | ATGAATATAAATTAATATCA+TGG | - | chr2_3:16750713-16750732 | Msa0281360:intron | 10.0% |
| !! | CATATATTTATAAAATCATA+TGG | - | chr2_3:16751223-16751242 | Msa0281360:CDS | 10.0% |
| !!! | TATAGTTACTTTTATTTTAA+AGG | + | chr2_3:16751507-16751526 | None:intergenic | 10.0% |
| !! | TAAAATAAAAGTAACTATAT+TGG | - | chr2_3:16751508-16751527 | Msa0281360:CDS | 10.0% |
| !!! | AAAATGTATTTTCATTATTA+TGG | - | chr2_3:16751760-16751779 | Msa0281360:intron | 10.0% |
| !!! | TTTTATTTGGATATCAATTT+AGG | - | chr2_3:16749714-16749733 | Msa0281360:intron | 15.0% |
| !!! | TATATCAACCTTTTTTTAAA+AGG | + | chr2_3:16750830-16750849 | None:intergenic | 15.0% |
| !! | ACCAATAAAGTTATTAAATA+GGG | + | chr2_3:16751481-16751500 | None:intergenic | 15.0% |
| !! | AACCAATAAAGTTATTAAAT+AGG | + | chr2_3:16751482-16751501 | None:intergenic | 15.0% |
| !! | AGAAATTAAAAACAAAATCT+AGG | + | chr2_3:16752841-16752860 | None:intergenic | 15.0% |
| !! | GTTAATGAATGTTCAATATA+TGG | + | chr2_3:16749993-16750012 | None:intergenic | 20.0% |
| !! | AAATTCGATAACACTTTAAA+TGG | + | chr2_3:16750213-16750232 | None:intergenic | 20.0% |
| !!! | TTTAAAGTGTTATCGAATTT+AGG | - | chr2_3:16750213-16750232 | Msa0281360:intron | 20.0% |
| !!! | CATTGTTTCCTTTTAAAAAA+AGG | - | chr2_3:16750819-16750838 | Msa0281360:intron | 20.0% |
| !! | ATGAGATACATAAAAATCAA+AGG | - | chr2_3:16751134-16751153 | Msa0281360:intron | 20.0% |
| !! | AATATATGTTGAATGATAAC+AGG | + | chr2_3:16751211-16751230 | None:intergenic | 20.0% |
| !!! | CATTGTAATTCTTATTTTCT+AGG | - | chr2_3:16751369-16751388 | Msa0281360:intron | 20.0% |
| !! | TCCCTATTTAATAACTTTAT+TGG | - | chr2_3:16751477-16751496 | Msa0281360:CDS | 20.0% |
| !! | TATAATTTATGTGTCTAGTT+TGG | - | chr2_3:16751586-16751605 | Msa0281360:intron | 20.0% |
| !! | TGGAAAAAAAAAAAATCTCA+CGG | + | chr2_3:16752218-16752237 | None:intergenic | 20.0% |
| !! | TTATATATACAGGTTATCAA+AGG | - | chr2_3:16752303-16752322 | Msa0281360:CDS | 20.0% |
| !! | ATATATTTCAGTACACTATA+CGG | - | chr2_3:16753241-16753260 | Msa0281360:intron | 20.0% |
| !! | GTTCTTTGATATATCTTTAA+TGG | - | chr2_3:16753439-16753458 | Msa0281360:intron | 20.0% |
| !!! | ACTTTAATTTTCTAGTTAAC+TGG | - | chr2_3:16753632-16753651 | Msa0281360:intron | 20.0% |
| !! | TATAAAGAACAGTCAAAAAT+AGG | + | chr2_3:16753700-16753719 | None:intergenic | 20.0% |
| !!! | AAAAAAGTATATGTAGAGAA+AGG | + | chr2_3:16753725-16753744 | None:intergenic | 20.0% |
| !! | ATAATTGCATTAAAGAAAGA+GGG | + | chr2_3:16753748-16753767 | None:intergenic | 20.0% |
| !! | TGTGATTAACCTTAATTTGA+AGG | - | chr2_3:16750025-16750044 | Msa0281360:intron | 25.0% |
| !!! | AGTTGGAACATTTGAAATTT+TGG | - | chr2_3:16750066-16750085 | Msa0281360:CDS | 25.0% |
| ! | CTTTATTAACGTGAATTTGA+AGG | + | chr2_3:16750099-16750118 | None:intergenic | 25.0% |
| ! | CGTTAATAAAGTTTAGTTGA+TGG | - | chr2_3:16750108-16750127 | Msa0281360:intron | 25.0% |
| !! | ATTTTTGTGACTGAAAAGAT+TGG | - | chr2_3:16750261-16750280 | Msa0281360:intron | 25.0% |
| !! | GTTTTGCAGATATTTAGATT+AGG | - | chr2_3:16750295-16750314 | Msa0281360:intron | 25.0% |
| ! | ATAAAACAATACTAACTGAG+GGG | + | chr2_3:16750575-16750594 | None:intergenic | 25.0% |
| ! | CATAAAACAATACTAACTGA+GGG | + | chr2_3:16750576-16750595 | None:intergenic | 25.0% |
| ! | TCATAAAACAATACTAACTG+AGG | + | chr2_3:16750577-16750596 | None:intergenic | 25.0% |
| ! | AATGTGACATTATTTGATGT+CGG | + | chr2_3:16750648-16750667 | None:intergenic | 25.0% |
| ! | TTCTATTCAGTTTAGAAATG+AGG | - | chr2_3:16750914-16750933 | Msa0281360:intron | 25.0% |
| ! | TCTAAAAATTAACACTCACT+AGG | + | chr2_3:16751110-16751129 | None:intergenic | 25.0% |
| ! | TGTCAAGTATATCTTAAACA+CGG | + | chr2_3:16751254-16751273 | None:intergenic | 25.0% |
| !! | ACATTACTTTCATGTTTTAC+TGG | - | chr2_3:16751342-16751361 | Msa0281360:intron | 25.0% |
| !!! | TCTTATTTTCTAGGCATAAT+TGG | - | chr2_3:16751378-16751397 | Msa0281360:intron | 25.0% |
| !!! | CTTATTTTCTAGGCATAATT+GGG | - | chr2_3:16751379-16751398 | Msa0281360:intron | 25.0% |
| !! | TGTTTGTTTGTTAGTAAGAT+AGG | - | chr2_3:16751623-16751642 | Msa0281360:intron | 25.0% |
| !! | AAATACATTTTTGCAGAAGA+TGG | + | chr2_3:16751751-16751770 | None:intergenic | 25.0% |
| ! | TTAGTCTGTTCATTAGTTAT+TGG | - | chr2_3:16752247-16752266 | Msa0281360:CDS | 25.0% |
| !! | ACAATTCTAAACGTATTTTG+TGG | - | chr2_3:16752513-16752532 | Msa0281360:intron | 25.0% |
| !! | CAATTCTAAACGTATTTTGT+GGG | - | chr2_3:16752514-16752533 | Msa0281360:intron | 25.0% |
| !!! | ACATATTTTTTACCCTTTTG+TGG | - | chr2_3:16752542-16752561 | Msa0281360:intron | 25.0% |
| !!! | ACAGTGTAGCTTTTTTTTAT+TGG | + | chr2_3:16753002-16753021 | None:intergenic | 25.0% |
| ! | TTCCAAATCCAAAACATTTA+GGG | + | chr2_3:16753028-16753047 | None:intergenic | 25.0% |
| ! | GATATATCTTTAATGGAGTA+AGG | - | chr2_3:16753446-16753465 | Msa0281360:intron | 25.0% |
| ! | TAGCATCAAGATAACATAAA+AGG | - | chr2_3:16753520-16753539 | Msa0281360:intron | 25.0% |
| !!! | TTATTTTTTGTGGTCTGTTT+GGG | + | chr2_3:16753667-16753686 | None:intergenic | 25.0% |
| ! | GATAATTGCATTAAAGAAAG+AGG | + | chr2_3:16753749-16753768 | None:intergenic | 25.0% |
| ! | AATATTGTTCTATCTACTCA+GGG | - | chr2_3:16753769-16753788 | Msa0281360:CDS | 25.0% |
| TTAATGTAGTTATAGTGTCG+TGG | - | chr2_3:16749772-16749791 | Msa0281360:intron | 30.0% | |
| TTCTAACAAATCTGCAATAG+CGG | - | chr2_3:16749819-16749838 | Msa0281360:intron | 30.0% | |
| TCACTATTACAACCTCAATT+AGG | - | chr2_3:16750384-16750403 | Msa0281360:intron | 30.0% | |
| CACTATTACAACCTCAATTA+GGG | - | chr2_3:16750385-16750404 | Msa0281360:intron | 30.0% | |
| TTAGATTTGACGAGTTTGAA+CGG | - | chr2_3:16750495-16750514 | Msa0281360:intron | 30.0% | |
| TCTTACAAGGAAACAACTTT+AGG | + | chr2_3:16750684-16750703 | None:intergenic | 30.0% | |
| GTTTCCTTGTAAGATATGAT+TGG | - | chr2_3:16750690-16750709 | Msa0281360:intron | 30.0% | |
| TCATCCAATCATATCTTACA+AGG | + | chr2_3:16750697-16750716 | None:intergenic | 30.0% | |
| AAGAAGGAATTCAATGTTCA+AGG | - | chr2_3:16750975-16750994 | Msa0281360:intron | 30.0% | |
| GCATCAAGAAACATAAAAGA+GGG | + | chr2_3:16751424-16751443 | None:intergenic | 30.0% | |
| TGCATCAAGAAACATAAAAG+AGG | + | chr2_3:16751425-16751444 | None:intergenic | 30.0% | |
| ! | ACAAGTTCGTGATTATCTTT+TGG | - | chr2_3:16751896-16751915 | Msa0281360:intron | 30.0% |
| ATCATATTATGCTGCTGTTA+TGG | - | chr2_3:16751923-16751942 | Msa0281360:intron | 30.0% | |
| TACAATTAGACTTAGCCAAA+AGG | + | chr2_3:16752040-16752059 | None:intergenic | 30.0% | |
| GAACAGACTAAAGAAAAAAC+TGG | + | chr2_3:16752238-16752257 | None:intergenic | 30.0% | |
| ATTAGTTATTGGATCAGTCA+GGG | - | chr2_3:16752258-16752277 | Msa0281360:CDS | 30.0% | |
| AATGCAACTCAACTAATGAA+TGG | + | chr2_3:16752438-16752457 | None:intergenic | 30.0% | |
| !! | GTTATAGAAGTACCACAAAA+GGG | + | chr2_3:16752557-16752576 | None:intergenic | 30.0% |
| ! | CATTCTTTCATTGACTAACA+AGG | + | chr2_3:16752605-16752624 | None:intergenic | 30.0% |
| ! | AGGCATGCATAACTTTTAAA+TGG | + | chr2_3:16752821-16752840 | None:intergenic | 30.0% |
| CATCTACACATGAAAAAAGT+GGG | + | chr2_3:16752931-16752950 | None:intergenic | 30.0% | |
| CTTCCAAATCCAAAACATTT+AGG | + | chr2_3:16753029-16753048 | None:intergenic | 30.0% | |
| TTAGACAACTGTAACAAGTT+GGG | + | chr2_3:16753065-16753084 | None:intergenic | 30.0% | |
| AACAAATATTCGTCACTGAA+AGG | + | chr2_3:16753144-16753163 | None:intergenic | 30.0% | |
| !!! | CTTATTTTTTGTGGTCTGTT+TGG | + | chr2_3:16753668-16753687 | None:intergenic | 30.0% |
| AACAGACCACAAAAAATAAG+AGG | - | chr2_3:16753668-16753687 | Msa0281360:CDS | 30.0% | |
| !!! | ATGGTTCCTCTTATTTTTTG+TGG | + | chr2_3:16753677-16753696 | None:intergenic | 30.0% |
| AAGAACAGTCAAAAATAGGA+TGG | + | chr2_3:16753696-16753715 | None:intergenic | 30.0% | |
| CAATATTGTTCTATCTACTC+AGG | - | chr2_3:16753768-16753787 | Msa0281360:CDS | 30.0% | |
| ATATTGTTCTATCTACTCAG+GGG | - | chr2_3:16753770-16753789 | Msa0281360:CDS | 30.0% | |
| ! | GTAGCAGAAACACTGTTTTA+CGG | + | chr2_3:16749379-16749398 | None:intergenic | 35.0% |
| ! | GTGGTGAATTTGAAGAGTAT+CGG | + | chr2_3:16749532-16749551 | None:intergenic | 35.0% |
| GAAAAGTAGCTATAGCATAG+CGG | - | chr2_3:16749794-16749813 | Msa0281360:intron | 35.0% | |
| ATTGACAAACTGTGTGTTAG+CGG | - | chr2_3:16749905-16749924 | Msa0281360:intron | 35.0% | |
| TTACGCACACCTTCAAATTA+AGG | + | chr2_3:16750037-16750056 | None:intergenic | 35.0% | |
| GTGCGTAATTGAATGTTAGT+TGG | - | chr2_3:16750049-16750068 | Msa0281360:intron | 35.0% | |
| TAGATTAGGTCCTGTTCAAT+CGG | - | chr2_3:16750309-16750328 | Msa0281360:intron | 35.0% | |
| TTACAACCTCAATTAGGGAA+TGG | - | chr2_3:16750390-16750409 | Msa0281360:intron | 35.0% | |
| ! | TGTTTCTCTCTCCTTTTGAA+TGG | + | chr2_3:16750465-16750484 | None:intergenic | 35.0% |
| TTGTTGGAATACACAATGGA+AGG | + | chr2_3:16750952-16750971 | None:intergenic | 35.0% | |
| TCCATTGTGTATTCCAACAA+TGG | - | chr2_3:16750952-16750971 | Msa0281360:intron | 35.0% | |
| TCCATTGTTGGAATACACAA+TGG | + | chr2_3:16750956-16750975 | None:intergenic | 35.0% | |
| TGTATTCCAACAATGGAAGA+AGG | - | chr2_3:16750959-16750978 | Msa0281360:intron | 35.0% | |
| TGAATTCCTTCTTCCATTGT+TGG | + | chr2_3:16750968-16750987 | None:intergenic | 35.0% | |
| GCAAAAGTCATTCTACAACA+AGG | + | chr2_3:16751026-16751045 | None:intergenic | 35.0% | |
| TGATTACTTCAGCTCATCTT+TGG | - | chr2_3:16751062-16751081 | Msa0281360:CDS | 35.0% | |
| AGGGTATAAGACAAATGACA+CGG | + | chr2_3:16751405-16751424 | None:intergenic | 35.0% | |
| CGTATTTGATCGTTCAATTC+AGG | - | chr2_3:16751661-16751680 | Msa0281360:intron | 35.0% | |
| ATTTGATCGTTCAATTCAGG+AGG | - | chr2_3:16751664-16751683 | Msa0281360:intron | 35.0% | |
| TTTGATCGTTCAATTCAGGA+GGG | - | chr2_3:16751665-16751684 | Msa0281360:intron | 35.0% | |
| ACCAAATGGAGCTAATGTAA+TGG | - | chr2_3:16751693-16751712 | Msa0281360:intron | 35.0% | |
| TCATCAACAAAACATGTTGC+AGG | - | chr2_3:16751792-16751811 | Msa0281360:intron | 35.0% | |
| AAGACTGCTAGCATACAATT+AGG | + | chr2_3:16751839-16751858 | None:intergenic | 35.0% | |
| ! | GTTCGTGATTATCTTTTGGT+AGG | - | chr2_3:16751900-16751919 | Msa0281360:intron | 35.0% |
| TACCATATGCAAACTGTTGT+TGG | - | chr2_3:16752058-16752077 | Msa0281360:intron | 35.0% | |
| AACCAACAACAGTTTGCATA+TGG | + | chr2_3:16752063-16752082 | None:intergenic | 35.0% | |
| !! | TGCAATAGAAGCATCTGAAA+TGG | - | chr2_3:16752138-16752157 | Msa0281360:intron | 35.0% |
| TATGCACACAAACTTATAGC+TGG | - | chr2_3:16752166-16752185 | Msa0281360:intron | 35.0% | |
| ATGCACACAAACTTATAGCT+GGG | - | chr2_3:16752167-16752186 | Msa0281360:intron | 35.0% | |
| CATTAGTTATTGGATCAGTC+AGG | - | chr2_3:16752257-16752276 | Msa0281360:CDS | 35.0% | |
| CAGAATATGAACTTACCCAT+GGG | + | chr2_3:16752381-16752400 | None:intergenic | 35.0% | |
| CACAATGTATCTTGACAACA+CGG | + | chr2_3:16752488-16752507 | None:intergenic | 35.0% | |
| !! | GGTTATAGAAGTACCACAAA+AGG | + | chr2_3:16752558-16752577 | None:intergenic | 35.0% |
| TTTGTGGTACTTCTATAACC+TGG | - | chr2_3:16752558-16752577 | Msa0281360:intron | 35.0% | |
| GTTAGTCAATGAAAGAATGC+TGG | - | chr2_3:16752606-16752625 | Msa0281360:intron | 35.0% | |
| CTTATGTTATTGCCAGAGAT+AGG | - | chr2_3:16752632-16752651 | Msa0281360:intron | 35.0% | |
| ! | TTGGAAACATTTTGCCATTG+GGG | + | chr2_3:16752666-16752685 | None:intergenic | 35.0% |
| ! | GTTGGAAACATTTTGCCATT+GGG | + | chr2_3:16752667-16752686 | None:intergenic | 35.0% |
| ! | TGTTGGAAACATTTTGCCAT+TGG | + | chr2_3:16752668-16752687 | None:intergenic | 35.0% |
| TGGCAAAATGTTTCCAACAT+CGG | - | chr2_3:16752669-16752688 | Msa0281360:intron | 35.0% | |
| GCATCTACACATGAAAAAAG+TGG | + | chr2_3:16752932-16752951 | None:intergenic | 35.0% | |
| ! | ACTGTTAGCCCTAAATGTTT+TGG | - | chr2_3:16753017-16753036 | Msa0281360:intron | 35.0% |
| !! | AGCCCTAAATGTTTTGGATT+TGG | - | chr2_3:16753023-16753042 | Msa0281360:intron | 35.0% |
| CTTAGACAACTGTAACAAGT+TGG | + | chr2_3:16753066-16753085 | None:intergenic | 35.0% | |
| CCTACAGAAGTAAAAGTTCA+AGG | + | chr2_3:16753109-16753128 | None:intergenic | 35.0% | |
| ! | CCTTGAACTTTTACTTCTGT+AGG | - | chr2_3:16753106-16753125 | Msa0281360:intron | 35.0% |
| TTACTTCTGTAGGATTCACA+TGG | - | chr2_3:16753116-16753135 | Msa0281360:intron | 35.0% | |
| GTTTGTCGAAATTGCTAGTA+AGG | - | chr2_3:16753161-16753180 | Msa0281360:intron | 35.0% | |
| CGTGCAGAATAAATATGTCA+GGG | + | chr2_3:16753211-16753230 | None:intergenic | 35.0% | |
| ACGTGCAGAATAAATATGTC+AGG | + | chr2_3:16753212-16753231 | None:intergenic | 35.0% | |
| ATTTGTGTGTATGTTCACAC+AGG | - | chr2_3:16753379-16753398 | Msa0281360:intron | 35.0% | |
| GGCATGTGATAATCTTTAAG+AGG | + | chr2_3:16753566-16753585 | None:intergenic | 35.0% | |
| TGACTAGATGTACCATTCAT+TGG | + | chr2_3:16753590-16753609 | None:intergenic | 35.0% | |
| TAGTCAGATGTATCTCTTAC+TGG | - | chr2_3:16753604-16753623 | Msa0281360:intron | 35.0% | |
| AGTCAGATGTATCTCTTACT+GGG | - | chr2_3:16753605-16753624 | Msa0281360:intron | 35.0% | |
| ! | TGGCAGCAACAAAACTATTT+TGG | - | chr2_3:16753799-16753818 | Msa0281360:CDS | 35.0% |
| ! | TTGAAAGCAGTCTTGTGTAA+GGG | + | chr2_3:16753838-16753857 | None:intergenic | 35.0% |
| ! | AGTGTTTCTGCTACTGAGTT+CGG | - | chr2_3:16749385-16749404 | Msa0281360:CDS | 40.0% |
| AGATGATGACAGCTCATTGA+CGG | + | chr2_3:16749472-16749491 | None:intergenic | 40.0% | |
| !! | GTGAATTTGAAGAGTATCGG+CGG | + | chr2_3:16749529-16749548 | None:intergenic | 40.0% |
| AAGCAATCTGATGAGAATCG+TGG | + | chr2_3:16749551-16749570 | None:intergenic | 40.0% | |
| TGTTCATCTTCCACTTCTTC+AGG | - | chr2_3:16749575-16749594 | Msa0281360:intron | 40.0% | |
| TAGAATCGAACCTGAAGAAG+TGG | + | chr2_3:16749588-16749607 | None:intergenic | 40.0% | |
| ATCTGCAATAGCGGTTATAG+TGG | - | chr2_3:16749828-16749847 | Msa0281360:intron | 40.0% | |
| GGACACAGTTCATGAAATGT+TGG | - | chr2_3:16749926-16749945 | Msa0281360:intron | 40.0% | |
| TCACACATTACTCTCTCATG+TGG | + | chr2_3:16750435-16750454 | None:intergenic | 40.0% | |
| GTGATCTCTCACCATTCAAA+AGG | - | chr2_3:16750451-16750470 | Msa0281360:intron | 40.0% | |
| ACAATACTAACTGAGGGGAA+TGG | + | chr2_3:16750570-16750589 | None:intergenic | 40.0% | |
| TGAACCAGACATCTTATTCC+AGG | - | chr2_3:16750886-16750905 | Msa0281360:CDS | 40.0% | |
| GAACCAGACATCTTATTCCA+GGG | - | chr2_3:16750887-16750906 | Msa0281360:CDS | 40.0% | |
| AACCAGACATCTTATTCCAG+GGG | - | chr2_3:16750888-16750907 | Msa0281360:CDS | 40.0% | |
| AAACTGAATAGAAACTCCCC+TGG | + | chr2_3:16750907-16750926 | None:intergenic | 40.0% | |
| !! | CAATGTTCAAGGTGCTACTT+TGG | - | chr2_3:16750986-16751005 | Msa0281360:intron | 40.0% |
| GCCATTACATTAGCTCCATT+TGG | + | chr2_3:16751697-16751716 | None:intergenic | 40.0% | |
| !! | GAGAATCGCACTGATTTCTT+TGG | - | chr2_3:16751945-16751964 | Msa0281360:intron | 40.0% |
| ! | TTTGTCGTTATTTGCTGCTC+AGG | - | chr2_3:16752004-16752023 | Msa0281360:intron | 40.0% |
| ! | TATTTGCTGCTCAGGTAACT+TGG | - | chr2_3:16752012-16752031 | Msa0281360:intron | 40.0% |
| ! | CAGATGTGTTATTCCTTTGC+AGG | - | chr2_3:16752096-16752115 | Msa0281360:intron | 40.0% |
| !! | ATCAGAATATCGGCTTTCTC+TGG | + | chr2_3:16752351-16752370 | None:intergenic | 40.0% |
| GGGCTCAGATATCAGAATAT+CGG | + | chr2_3:16752361-16752380 | None:intergenic | 40.0% | |
| TATTCTGATATCTGAGCCCA+TGG | - | chr2_3:16752362-16752381 | Msa0281360:intron | 40.0% | |
| ATTCTGATATCTGAGCCCAT+GGG | - | chr2_3:16752363-16752382 | Msa0281360:intron | 40.0% | |
| GCAGAATATGAACTTACCCA+TGG | + | chr2_3:16752382-16752401 | None:intergenic | 40.0% | |
| CTGCACAAACAGAAAATTCC+AGG | + | chr2_3:16752579-16752598 | None:intergenic | 40.0% | |
| ! | CTGGAATTTTCTGTTTGTGC+AGG | - | chr2_3:16752577-16752596 | Msa0281360:intron | 40.0% |
| ! | TGGAAACATTTTGCCATTGG+GGG | + | chr2_3:16752665-16752684 | None:intergenic | 40.0% |
| GGCAAAATGTTTCCAACATC+GGG | - | chr2_3:16752670-16752689 | Msa0281360:intron | 40.0% | |
| AAATGTTTCCAACATCGGGA+AGG | - | chr2_3:16752674-16752693 | Msa0281360:intron | 40.0% | |
| GGGTCGGCAAAAAAAAAAGT+GGG | + | chr2_3:16752867-16752886 | None:intergenic | 40.0% | |
| GTAAGGTGCGCAATTATATG+TGG | - | chr2_3:16753178-16753197 | Msa0281360:intron | 40.0% | |
| TAATGGAGTAAGGATCCTCA+CGG | - | chr2_3:16753456-16753475 | Msa0281360:intron | 40.0% | |
| TATCACATGCCACCAATGAA+TGG | - | chr2_3:16753575-16753594 | Msa0281360:intron | 40.0% | |
| CTAGATGTACCATTCATTGG+TGG | + | chr2_3:16753587-16753606 | None:intergenic | 40.0% | |
| ! | CTTGAAAGCAGTCTTGTGTA+AGG | + | chr2_3:16753839-16753858 | None:intergenic | 40.0% |
| CTTACACAAGACTGCTTTCA+AGG | - | chr2_3:16753837-16753856 | Msa0281360:five_prime_UTR | 40.0% | |
| TTTCTGCTACTGAGTTCGGT+CGG | - | chr2_3:16749389-16749408 | Msa0281360:CDS | 45.0% | |
| ! | GCTCATTGACGGATGCTAAA+GGG | + | chr2_3:16749461-16749480 | None:intergenic | 45.0% |
| ! | AGCTCATTGACGGATGCTAA+AGG | + | chr2_3:16749462-16749481 | None:intergenic | 45.0% |
| !! | TCCTGTTCAATCGGTTTGCA+CGG | - | chr2_3:16750318-16750337 | Msa0281360:intron | 45.0% |
| GAGGATCCATTCCCTAATTG+AGG | + | chr2_3:16750399-16750418 | None:intergenic | 45.0% | |
| GAAACGACGTTAAATGCTGC+AGG | + | chr2_3:16750740-16750759 | None:intergenic | 45.0% | |
| TCAGGAGGGAACATACCAAA+TGG | - | chr2_3:16751679-16751698 | Msa0281360:intron | 45.0% | |
| ! | GGTCGTGTAGTAGTTGATGT+TGG | - | chr2_3:16751966-16751985 | Msa0281360:intron | 45.0% |
| ! | GTAGTAGTTGATGTTGGTGC+TGG | - | chr2_3:16751972-16751991 | Msa0281360:intron | 45.0% |
| ! | TCAGGTAACTTGGCACCTTT+TGG | - | chr2_3:16752022-16752041 | Msa0281360:intron | 45.0% |
| ! | TGTGTTATTCCTTTGCAGGC+AGG | - | chr2_3:16752100-16752119 | Msa0281360:intron | 45.0% |
| TAATCCGTTGACCCAGTAGT+GGG | + | chr2_3:16752195-16752214 | None:intergenic | 45.0% | |
| GATAGGTTTCTTACCCCCAA+TGG | - | chr2_3:16752649-16752668 | Msa0281360:intron | 45.0% | |
| TTTCCAACATCGGGAAGGTT+TGG | - | chr2_3:16752679-16752698 | Msa0281360:intron | 45.0% | |
| GGGGTCGGCAAAAAAAAAAG+TGG | + | chr2_3:16752868-16752887 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr2_3:16752887-16752906 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr2_3:16752888-16752907 | None:intergenic | 45.0% |
| !!! | TAATTAAATGAAATTTTATT+TGG | - | chr2_3:16749701-16749720 | Msa0281360:intron | 5.0% |
| !! | TAATAAATATATATCAAAAT+TGG | + | chr2_3:16750146-16750165 | None:intergenic | 5.0% |
| !! | TATTAATTATTTATATATAC+AGG | - | chr2_3:16752293-16752312 | Msa0281360:CDS | 5.0% |
| !! | AAATAAAAAGATAAAAATAA+AGG | + | chr2_3:16752721-16752740 | None:intergenic | 5.0% |
| GTCGGAGACAATGGAGGAAT+CGG | - | chr2_3:16749407-16749426 | Msa0281360:CDS | 50.0% | |
| ATCTCCATCTTCTGCTTCGC+CGG | - | chr2_3:16749488-16749507 | Msa0281360:intron | 50.0% | |
| !! | TTTGAAGAGTATCGGCGGTG+AGG | + | chr2_3:16749524-16749543 | None:intergenic | 50.0% |
| GTCACTGCAGTTCAGACAAG+TGG | + | chr2_3:16750191-16750210 | None:intergenic | 50.0% | |
| ACCGTGCAAACCGATTGAAC+AGG | + | chr2_3:16750322-16750341 | None:intergenic | 50.0% | |
| !! | TGTTCAATCGGTTTGCACGG+TGG | - | chr2_3:16750321-16750340 | Msa0281360:intron | 50.0% |
| ! | AGGTTCTGATGCAGGCAAAC+AGG | - | chr2_3:16750345-16750364 | Msa0281360:intron | 50.0% |
| ATGTGGAAATCCCACGTGAG+AGG | + | chr2_3:16750418-16750437 | None:intergenic | 50.0% | |
| ACTGATCCTGTGCTCTTGTG+CGG | - | chr2_3:16750785-16750804 | Msa0281360:intron | 50.0% | |
| CTCCCCTGGAATAAGATGTC+TGG | + | chr2_3:16750893-16750912 | None:intergenic | 50.0% | |
| ACATGTTGCAGGACTACGTG+AGG | - | chr2_3:16751803-16751822 | Msa0281360:intron | 50.0% | |
| !! | GTTGATGTTGGTGCTGGTAG+TGG | - | chr2_3:16751978-16751997 | Msa0281360:intron | 50.0% |
| ! | TGTTTTGCACCTGCCTGCAA+AGG | + | chr2_3:16752112-16752131 | None:intergenic | 50.0% |
| TATAGCTGGGAACCCACTAC+TGG | - | chr2_3:16752180-16752199 | Msa0281360:intron | 50.0% | |
| ATAGCTGGGAACCCACTACT+GGG | - | chr2_3:16752181-16752200 | Msa0281360:intron | 50.0% | |
| GTAATCCGTTGACCCAGTAG+TGG | + | chr2_3:16752196-16752215 | None:intergenic | 50.0% | |
| GGTTATCAAAGGCAGAGTCG+AGG | - | chr2_3:16752314-16752333 | Msa0281360:CDS | 50.0% | |
| GGGGGTAAGAAACCTATCTC+TGG | + | chr2_3:16752647-16752666 | None:intergenic | 50.0% | |
| CAACCAAACCTTCCCGATGT+TGG | + | chr2_3:16752685-16752704 | None:intergenic | 50.0% | |
| ! | TTTTTGCCGACCCCACTTAG+TGG | - | chr2_3:16752874-16752893 | Msa0281360:intron | 50.0% |
| ! | TTTTGCCGACCCCACTTAGT+GGG | - | chr2_3:16752875-16752894 | Msa0281360:intron | 50.0% |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr2_3:16752883-16752902 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr2_3:16752889-16752908 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr2_3:16752886-16752905 | Msa0281360:intron | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | - | chr2_3:16752889-16752908 | Msa0281360:intron | 50.0% | |
| TAGTGAGAATCCTCTCCGTG+AGG | + | chr2_3:16753474-16753493 | None:intergenic | 50.0% | |
| TATCTACTCAGGGGCTGTTC+TGG | - | chr2_3:16753779-16753798 | Msa0281360:CDS | 50.0% | |
| CTGAGTTCGGTCGGAGACAA+TGG | - | chr2_3:16749398-16749417 | Msa0281360:CDS | 55.0% | |
| AGTTCGGTCGGAGACAATGG+AGG | - | chr2_3:16749401-16749420 | Msa0281360:CDS | 55.0% | |
| GGAGACAATGGAGGAATCGG+CGG | - | chr2_3:16749410-16749429 | Msa0281360:CDS | 55.0% | |
| AGGAATCGGCGGCGATAAAG+CGG | - | chr2_3:16749421-16749440 | Msa0281360:CDS | 55.0% | |
| TCTCCATCTTCTGCTTCGCC+GGG | - | chr2_3:16749489-16749508 | Msa0281360:intron | 55.0% | |
| !! | CAATCGGTTTGCACGGTGGA+AGG | - | chr2_3:16750325-16750344 | Msa0281360:intron | 55.0% |
| ! | ACGGTGGAAGGTTCTGATGC+AGG | - | chr2_3:16750337-16750356 | Msa0281360:intron | 55.0% |
| AGGGAATGGATCCTCTCACG+TGG | - | chr2_3:16750404-16750423 | Msa0281360:intron | 55.0% | |
| GGGAATGGATCCTCTCACGT+GGG | - | chr2_3:16750405-16750424 | Msa0281360:intron | 55.0% | |
| TTGCAGGACTACGTGAGGAC+AGG | - | chr2_3:16751808-16751827 | Msa0281360:intron | 55.0% | |
| GGAACCCACTACTGGGTCAA+CGG | - | chr2_3:16752188-16752207 | Msa0281360:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr2_3:16752881-16752900 | Msa0281360:intron | 55.0% | |
| GAGTAAGGATCCTCACGGAG+AGG | - | chr2_3:16753461-16753480 | Msa0281360:intron | 55.0% | |
| ACTCCCGGCGAAGCAGAAGA+TGG | + | chr2_3:16749495-16749514 | None:intergenic | 60.0% | |
| GCGGTGAGGCGAAGAACTCC+CGG | + | chr2_3:16749510-16749529 | None:intergenic | 65.0% | |
| ! | CACACGCCGCACAAGAGCAC+AGG | + | chr2_3:16750794-16750813 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 16749371 | 16753870 | 16749371 | ID=Msa0281360;Name=Msa0281360 |
| chr2_3 | mRNA | 16749371 | 16753870 | 16749371 | ID=Msa0281360-mRNA-1;Parent=Msa0281360;Name=Msa0281360-mRNA-1;_AED=0.13;_eAED=0.13;_QI=46|0.62|0.66|1|1|0.88|9|0|312 |
| chr2_3 | exon | 16749371 | 16749451 | 16749371 | ID=Msa0281360-mRNA-1:exon:6906;Parent=Msa0281360-mRNA-1 |
| chr2_3 | exon | 16750059 | 16750113 | 16750059 | ID=Msa0281360-mRNA-1:exon:6905;Parent=Msa0281360-mRNA-1 |
| chr2_3 | exon | 16750546 | 16750642 | 16750546 | ID=Msa0281360-mRNA-1:exon:6904;Parent=Msa0281360-mRNA-1 |
| chr2_3 | exon | 16750857 | 16750926 | 16750857 | ID=Msa0281360-mRNA-1:exon:6903;Parent=Msa0281360-mRNA-1 |
| chr2_3 | exon | 16751025 | 16751123 | 16751025 | ID=Msa0281360-mRNA-1:exon:6902;Parent=Msa0281360-mRNA-1 |
| chr2_3 | exon | 16751216 | 16751319 | 16751216 | ID=Msa0281360-mRNA-1:exon:6901;Parent=Msa0281360-mRNA-1 |
| chr2_3 | exon | 16751412 | 16751558 | 16751412 | ID=Msa0281360-mRNA-1:exon:6900;Parent=Msa0281360-mRNA-1 |
| chr2_3 | exon | 16752245 | 16752347 | 16752245 | ID=Msa0281360-mRNA-1:exon:6899;Parent=Msa0281360-mRNA-1 |
| chr2_3 | exon | 16753645 | 16753870 | 16753645 | ID=Msa0281360-mRNA-1:exon:6898;Parent=Msa0281360-mRNA-1 |
| chr2_3 | five_prime_UTR | 16753825 | 16753870 | 16753825 | ID=Msa0281360-mRNA-1:five_prime_utr;Parent=Msa0281360-mRNA-1 |
| chr2_3 | CDS | 16753645 | 16753824 | 16753645 | ID=Msa0281360-mRNA-1:cds;Parent=Msa0281360-mRNA-1 |
| chr2_3 | CDS | 16752245 | 16752347 | 16752245 | ID=Msa0281360-mRNA-1:cds;Parent=Msa0281360-mRNA-1 |
| chr2_3 | CDS | 16751412 | 16751558 | 16751412 | ID=Msa0281360-mRNA-1:cds;Parent=Msa0281360-mRNA-1 |
| chr2_3 | CDS | 16751216 | 16751319 | 16751216 | ID=Msa0281360-mRNA-1:cds;Parent=Msa0281360-mRNA-1 |
| chr2_3 | CDS | 16751025 | 16751123 | 16751025 | ID=Msa0281360-mRNA-1:cds;Parent=Msa0281360-mRNA-1 |
| chr2_3 | CDS | 16750857 | 16750926 | 16750857 | ID=Msa0281360-mRNA-1:cds;Parent=Msa0281360-mRNA-1 |
| chr2_3 | CDS | 16750546 | 16750642 | 16750546 | ID=Msa0281360-mRNA-1:cds;Parent=Msa0281360-mRNA-1 |
| chr2_3 | CDS | 16750059 | 16750113 | 16750059 | ID=Msa0281360-mRNA-1:cds;Parent=Msa0281360-mRNA-1 |
| chr2_3 | CDS | 16749371 | 16749451 | 16749371 | ID=Msa0281360-mRNA-1:cds;Parent=Msa0281360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
